AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937430 MtrunA17_Chr6g0453421 98.327 538 9 0 1 538 1 538 0.0 1069
Msa0937430 MtrunA17_Chr7g0217681 68.182 550 157 10 1 536 1 546 0.0 656
Msa0937430 MtrunA17_Chr2g0285771 33.910 578 291 22 11 530 5 549 1.77e-84 274
Msa0937430 MtrunA17_Chr2g0285771 28.875 329 179 9 45 341 311 616 1.55e-26 114
Msa0937430 MtrunA17_Chr3g0140741 37.473 459 217 11 47 451 32 474 5.12e-73 245
Msa0937430 MtrunA17_Chr3g0140741 32.906 234 125 6 45 277 310 512 3.73e-32 130
Msa0937430 MtrunA17_Chr8g0376551 31.694 549 295 15 25 514 22 549 1.43e-66 227
Msa0937430 MtrunA17_Chr8g0376551 30.128 312 173 10 45 330 313 605 1.20e-25 111
Msa0937430 MtrunA17_Chr4g0049801 35.698 437 242 12 40 451 13 435 6.80e-62 214
Msa0937430 MtrunA17_Chr4g0049801 30.462 325 169 9 44 322 263 576 1.51e-33 134
Msa0937430 MtrunA17_Chr4g0002241 33.023 430 251 9 32 460 3 396 3.16e-57 201
Msa0937430 MtrunA17_Chr4g0002241 33.333 207 123 4 10 216 191 382 7.47e-28 117
Msa0937430 MtrunA17_Chr7g0250921 64.671 167 26 2 350 516 12 145 3.06e-53 179
Msa0937430 MtrunA17_Chr3g0127051 31.166 446 246 12 47 451 63 488 2.12e-49 180
Msa0937430 MtrunA17_Chr3g0127051 39.459 185 93 6 290 455 64 248 5.02e-22 100
Msa0937430 MtrunA17_Chr3g0127051 26.752 314 189 10 45 338 329 621 3.02e-17 85.1
Msa0937430 MtrunA17_Chr5g0412061 30.485 433 279 11 33 454 25 446 2.87e-45 168
Msa0937430 MtrunA17_Chr5g0412061 25.589 297 199 7 48 330 276 564 3.73e-19 90.9
Msa0937430 MtrunA17_Chr2g0279641 43.023 172 91 3 287 451 329 500 7.24e-32 130
Msa0937430 MtrunA17_Chr2g0279641 36.872 179 104 2 43 219 327 498 2.65e-30 125
Msa0937430 MtrunA17_Chr2g0279641 26.087 414 229 13 49 445 50 403 1.15e-26 114
Msa0937430 MtrunA17_Chr2g0279641 28.033 239 141 7 238 456 2 229 8.61e-14 74.3
Msa0937430 MtrunA17_Chr7g0249721 33.184 223 126 7 45 256 98 308 3.85e-25 105
Msa0937430 MtrunA17_Chr7g0249721 31.507 219 122 8 255 449 56 270 8.99e-14 72.4
Msa0937430 MtrunA17_Chr1g0184511 36.416 173 100 3 46 216 164 328 8.32e-25 108
Msa0937430 MtrunA17_Chr1g0184511 32.558 172 110 3 288 453 164 335 1.41e-15 79.7
Msa0937430 MtrunA17_Chr7g0274301 36.842 171 98 4 46 216 114 274 9.41e-25 107
Msa0937430 MtrunA17_Chr7g0274301 25.871 201 128 4 255 453 100 281 7.13e-15 77.4
Msa0937430 MtrunA17_Chr2g0298721 32.386 176 106 3 46 217 69 235 1.03e-19 92.0
Msa0937430 MtrunA17_Chr2g0298721 31.844 179 110 3 292 463 73 246 5.91e-17 83.6
Msa0937430 MtrunA17_Chr4g0071791 31.977 172 108 2 48 217 45 209 3.30e-18 87.0
Msa0937430 MtrunA17_Chr4g0071791 31.633 196 119 4 279 460 27 221 4.93e-15 77.4
Msa0937430 MtrunA17_Chr1g0197441 24.915 293 180 11 47 331 36 296 6.25e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937430 AT5G15270.3 62.127 536 183 11 6 536 11 531 0.0 642
Msa0937430 AT5G15270.2 62.357 526 181 10 6 529 11 521 0.0 636
Msa0937430 AT5G15270.1 62.357 526 181 10 6 529 11 521 0.0 636
Msa0937430 AT1G14170.3 51.335 487 198 11 7 483 6 463 8.36e-143 421
Msa0937430 AT1G14170.1 51.648 455 185 9 38 483 10 438 2.30e-135 400
Msa0937430 AT1G14170.2 51.556 450 183 9 43 483 7 430 9.97e-134 396
Msa0937430 AT5G46190.1 34.698 464 240 15 38 454 33 480 1.48e-68 233
Msa0937430 AT5G46190.4 34.698 464 240 15 38 454 33 480 1.48e-68 233
Msa0937430 AT5G46190.3 34.698 464 240 15 38 454 33 480 1.48e-68 233
Msa0937430 AT5G46190.2 34.698 464 240 15 38 454 33 480 6.06e-68 232
Msa0937430 AT4G18375.3 30.616 552 296 19 27 534 11 519 3.84e-62 213
Msa0937430 AT4G18375.2 30.978 552 294 20 27 534 11 519 2.14e-61 213
Msa0937430 AT4G18375.2 30.667 300 156 8 45 327 310 574 8.03e-22 99.8
Msa0937430 AT5G53060.3 34.642 433 240 14 47 451 68 485 3.82e-58 203
Msa0937430 AT1G51580.1 30.599 451 239 11 45 451 17 437 1.42e-57 202
Msa0937430 AT1G51580.1 34.286 175 102 2 42 216 271 432 4.56e-25 109
Msa0937430 AT5G53060.1 34.642 433 240 14 47 451 68 485 4.11e-57 202
Msa0937430 AT2G03110.2 49.020 153 67 4 80 222 1 152 4.06e-39 140
Msa0937430 AT2G03110.1 49.020 153 67 4 80 222 1 152 4.06e-39 140
Msa0937430 AT2G03110.3 49.020 153 67 4 80 222 1 152 4.06e-39 140
Msa0937430 AT5G64390.2 38.983 177 97 3 42 216 447 614 1.62e-31 130
Msa0937430 AT5G64390.2 34.595 185 112 4 274 451 437 619 1.21e-24 108
Msa0937430 AT5G64390.2 34.466 206 112 4 22 213 22 218 1.65e-24 108
Msa0937430 AT5G64390.2 33.714 175 89 5 290 442 48 217 8.02e-14 75.1
Msa0937430 AT5G64390.3 38.983 177 97 3 42 216 447 614 1.67e-31 130
Msa0937430 AT5G64390.3 34.595 185 112 4 274 451 437 619 1.26e-24 108
Msa0937430 AT5G64390.3 34.466 206 112 4 22 213 22 218 1.70e-24 108
Msa0937430 AT5G64390.3 33.714 175 89 5 290 442 48 217 8.23e-14 75.1
Msa0937430 AT5G64390.1 38.983 177 97 3 42 216 447 614 1.75e-31 130
Msa0937430 AT5G64390.1 34.595 185 112 4 274 451 437 619 1.17e-24 108
Msa0937430 AT5G64390.1 34.123 211 116 4 22 218 22 223 1.70e-24 108
Msa0937430 AT5G64390.1 32.370 173 94 5 290 442 48 217 8.33e-14 75.1
Msa0937430 AT2G22600.1 27.253 455 255 14 45 454 23 446 2.38e-27 116
Msa0937430 AT4G18375.1 31.429 315 162 9 233 534 33 306 3.37e-27 114
Msa0937430 AT4G18375.1 29.747 316 168 9 45 341 97 377 2.25e-22 99.8
Msa0937430 AT5G09560.1 25.885 537 296 18 45 517 28 526 2.38e-25 110
Msa0937430 AT3G04610.3 27.660 329 173 11 46 327 162 472 6.64e-25 108
Msa0937430 AT3G04610.3 28.090 178 122 3 288 460 162 338 9.26e-16 80.5
Msa0937430 AT3G04610.4 27.660 329 173 11 46 327 162 472 6.64e-25 108
Msa0937430 AT3G04610.4 28.090 178 122 3 288 460 162 338 9.26e-16 80.5
Msa0937430 AT3G04610.2 27.660 329 173 11 46 327 186 496 8.56e-25 108
Msa0937430 AT3G04610.2 28.090 178 122 3 288 460 186 362 1.07e-15 80.5
Msa0937430 AT3G04610.1 27.660 329 173 11 46 327 186 496 8.56e-25 108
Msa0937430 AT3G04610.1 28.090 178 122 3 288 460 186 362 1.07e-15 80.5
Msa0937430 AT4G26000.1 25.532 329 196 8 46 337 73 389 5.07e-19 90.5
Msa0937430 AT4G26000.1 31.250 176 113 3 292 460 77 251 1.81e-14 76.3
Msa0937430 AT5G04430.2 27.835 291 174 10 47 331 35 295 6.06e-17 82.8
Msa0937430 AT5G04430.1 27.083 288 159 10 47 331 35 274 5.91e-13 70.5
Msa0937430 AT5G53060.2 37.209 129 60 5 47 159 68 191 1.59e-12 67.0
Msa0937430 AT1G33680.1 28.922 204 102 8 25 211 214 391 6.54e-11 65.5

Find 169 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTCTTGTTGGTCCTTA+TGG 0.120314 6_3:-8762253 Msa0937430:CDS
TGCTTTCTTGATTAGATTTC+GGG 0.149531 6_3:-8761444 Msa0937430:intron
CCTTTGTAATGTCACAATTT+AGG 0.172808 6_3:+8764615 None:intergenic
CTCCTCTTGTTGGTCCTTAT+GGG 0.178377 6_3:-8762252 Msa0937430:CDS
GCACGAATTGGCTGCCTTAT+TGG 0.195380 6_3:-8761677 Msa0937430:CDS
CTTTGACAGTATGCGAATAT+TGG 0.223025 6_3:+8761610 None:intergenic
AGAAAGATTGGTAGTATTAT+TGG 0.242270 6_3:-8763411 Msa0937430:CDS
CAGAATTTACGTAGTGAAAC+TGG 0.258753 6_3:-8763078 Msa0937430:CDS
GGACTATGAAAGTTATTCTT+TGG 0.260439 6_3:-8761016 Msa0937430:CDS
GGAGCAGTTTGTGATTAATA+AGG 0.280124 6_3:-8763466 Msa0937430:CDS
AACTTGCACAAGAGCATCTT+TGG 0.282982 6_3:+8761407 None:intergenic
TCCGTTTATCTGTAGCTTGC+TGG 0.283131 6_3:-8761054 Msa0937430:intron
AATCAAATAAGGCAGGATTC+TGG 0.284752 6_3:-8762079 Msa0937430:CDS
GGAAACCTTGGCGGCGTGAT+AGG 0.286167 6_3:-8762121 Msa0937430:CDS
TTAGGTCCTGGTGACACTTA+TGG 0.290203 6_3:-8761204 Msa0937430:CDS
TATGGAGGCTCAAGTGATTT+AGG 0.291524 6_3:-8761222 Msa0937430:CDS
GATCAGATAGGTTGTGTTCT+TGG 0.294583 6_3:-8763120 Msa0937430:CDS
GTTCGATTGGTTTGTCCAAC+TGG 0.320110 6_3:-8762142 Msa0937430:CDS
CTTGCTGGAGGCAGTGGCTA+TGG 0.340659 6_3:-8761039 Msa0937430:CDS
GTTCACCTCTTTAGTTGAAA+TGG 0.342169 6_3:+8762006 None:intergenic
GACTATGAAAGTTATTCTTT+GGG 0.351252 6_3:-8761015 Msa0937430:CDS
TGCAGAACTATCAACTTTGA+TGG 0.352192 6_3:+8762051 None:intergenic
TTGCTGGAGGCAGTGGCTAT+GGG 0.353927 6_3:-8761038 Msa0937430:CDS
GGATGCTGCAGTTGTGAAAA+AGG 0.356643 6_3:-8762413 Msa0937430:CDS
GTGGGGATGGCTCCTCTTGT+TGG 0.359180 6_3:-8762262 Msa0937430:CDS
GAGGCATAATAAATCAAATA+AGG 0.359602 6_3:-8762090 Msa0937430:CDS
TCTACTGGAGCAGGAATATA+TGG 0.362425 6_3:+8761318 None:intergenic
ATCAAATAAGGCAGGATTCT+GGG 0.366431 6_3:-8762078 Msa0937430:CDS
TAGATCCTCCTTTACCAATA+AGG 0.367203 6_3:+8761663 None:intergenic
CATTGTTTAAGATTCATGAT+AGG 0.377502 6_3:-8763221 Msa0937430:CDS
CAAAGAGAAAGAAATAATTA+TGG 0.378615 6_3:-8763567 Msa0937430:CDS
GTGAGATAGTTAAGCAATTG+AGG 0.389238 6_3:-8763380 Msa0937430:CDS
GATAGAGAGGGTGCTGTCCC+TGG 0.396068 6_3:-8761357 Msa0937430:CDS
GGCTCAGATTCGTATTCTTA+AGG 0.398785 6_3:-8763055 Msa0937430:CDS
CTGTCATAGTTAAGAACATC+TGG 0.412089 6_3:+8761291 None:intergenic
CTCCGCCGTCATAGTCAGAC+TGG 0.412114 6_3:+8763529 None:intergenic
CTGTAGCTTGCTGGAGGCAG+TGG 0.416710 6_3:-8761045 Msa0937430:intron
AATAACCATTTCAACTAAAG+AGG 0.425835 6_3:-8762011 Msa0937430:intron
ATGACGGCGGAGGAAATAAA+AGG 0.433275 6_3:-8763518 Msa0937430:CDS
TCCCAGTGGTGGTTCACTCA+TGG 0.435069 6_3:-8762308 Msa0937430:CDS
AGGATCGGTGAGACTGTGCC+GGG 0.437873 6_3:-8763336 Msa0937430:CDS
GCAGGAATATATGGTAGAAC+TGG 0.442280 6_3:+8761327 None:intergenic
TTGTGTCCGGGGAGAAAGAT+TGG 0.447867 6_3:-8763423 Msa0937430:CDS
TATATTCCTGCTCCAGTAGA+TGG 0.449132 6_3:-8761315 Msa0937430:CDS
TCTCGAACTCAGCATTTACT+TGG 0.450339 6_3:-8762352 Msa0937430:CDS
TGAGATAGTTAAGCAATTGA+GGG 0.451341 6_3:-8763379 Msa0937430:CDS
TGGGACGGAATAGTACTGTT+TGG 0.451826 6_3:-8760996 Msa0937430:CDS
TCCTCTTGTTGGTCCTTATG+GGG 0.452392 6_3:-8762251 Msa0937430:CDS
AGAACATCTGGACCATCTAC+TGG 0.453048 6_3:+8761303 None:intergenic
TTGGTATCATCAGCACGAAT+TGG 0.454187 6_3:-8761689 Msa0937430:CDS
CCCAGTGGTGGTTCACTCAT+GGG 0.456030 6_3:-8762307 Msa0937430:CDS
GGTAGAACTGGAAGGAATCC+AGG 0.467927 6_3:+8761339 None:intergenic
ACCCATGAGTGAACCACCAC+TGG 0.471238 6_3:+8762306 None:intergenic
CCAACAGCTTAGCATTCACT+TGG 0.476223 6_3:+8763151 None:intergenic
TGCTTCTGATGATGATGAAA+TGG 0.478394 6_3:-8761570 Msa0937430:CDS
GATTGGTAGTATTATTGGTA+GGG 0.478480 6_3:-8763406 Msa0937430:CDS
AAAGTTGATAGTTCTGCAAA+AGG 0.479021 6_3:-8762046 Msa0937430:CDS
GCAATTGAGGGTAGAAACTA+AGG 0.479035 6_3:-8763367 Msa0937430:CDS
TAAAAGCACGGCTGCCTCTA+CGG 0.480414 6_3:+8761775 None:intergenic
ATTGTTTAAGATTCATGATA+GGG 0.480776 6_3:-8763220 Msa0937430:CDS
ATAGGTTGTGTTCTTGGAAA+AGG 0.484775 6_3:-8763114 Msa0937430:CDS
GGAATGGAGGTGATCATGAC+AGG 0.484928 6_3:-8763494 Msa0937430:CDS
AGGACCTCCGATTGTGGGGA+TGG 0.487016 6_3:-8762275 Msa0937430:CDS
TGAAGATTTACAGAGTGATC+AGG 0.487322 6_3:-8763190 Msa0937430:CDS
AACTGCAGGACCTCCGATTG+TGG 0.487570 6_3:-8762281 Msa0937430:CDS
GAGGTGATCATGACAGGGAT+AGG 0.494577 6_3:-8763488 Msa0937430:CDS
CATAATAAATCAAATAAGGC+AGG 0.496498 6_3:-8762086 Msa0937430:CDS
GGCTCAAGTGATTTAGGTCC+TGG 0.497025 6_3:-8761216 Msa0937430:CDS
GAAGAAGATATTTCATCCCT+CGG 0.499062 6_3:+8762178 None:intergenic
TTAAACAATGCATCCTCAGC+AGG 0.501300 6_3:+8763234 None:intergenic
CAATATTCGCATACTGTCAA+AGG 0.501644 6_3:-8761609 Msa0937430:CDS
AGAATTTACGTAGTGAAACT+GGG 0.506241 6_3:-8763077 Msa0937430:CDS
TCACTCATGGGTCCAACTGC+AGG 0.507662 6_3:-8762295 Msa0937430:CDS
TAGAAACTAAGGCTAAGATT+AGG 0.513118 6_3:-8763356 Msa0937430:CDS
GAAACCTTGGCGGCGTGATA+GGG 0.514629 6_3:-8762120 Msa0937430:CDS
AGAGGAGCCATCCCCACAAT+CGG 0.517053 6_3:+8762268 None:intergenic
CATTCATATTCAAGTGGCTA+TGG 0.517078 6_3:-8761240 Msa0937430:CDS
ATTGGCTGCCTTATTGGTAA+AGG 0.517590 6_3:-8761671 Msa0937430:CDS
ATTGGTAGTATTATTGGTAG+GGG 0.520404 6_3:-8763405 Msa0937430:CDS
CAGCACCCTCTCTATCGAAA+AGG 0.521846 6_3:+8761364 None:intergenic
AGCACGGCTGCCTCTACGGT+TGG 0.522327 6_3:+8761779 None:intergenic
ACTGCAGGACCTCCGATTGT+GGG 0.525961 6_3:-8762280 Msa0937430:CDS
ATAAAGGTGACACTGGTGAC+TGG 0.529820 6_3:-8762225 Msa0937430:CDS
GTTTGTCCAACTGGAAACCT+TGG 0.534021 6_3:-8762133 Msa0937430:CDS
AGATTGGTAGTATTATTGGT+AGG 0.534949 6_3:-8763407 Msa0937430:CDS
TGTCCAACTGGAAACCTTGG+CGG 0.534979 6_3:-8762130 Msa0937430:CDS
TAGGATCGGTGAGACTGTGC+CGG 0.535129 6_3:-8763337 Msa0937430:CDS
CAGAGTGATCAGGAGGAAGA+AGG 0.537264 6_3:-8763180 Msa0937430:CDS
TCTGGACCATCTACTGGAGC+AGG 0.538662 6_3:+8761309 None:intergenic
CCTCTTGTTGGTCCTTATGG+GGG 0.538953 6_3:-8762250 Msa0937430:CDS
GTCTATGTACTCGGCTCCGA+GGG 0.539900 6_3:-8762194 Msa0937430:CDS
GGTTGTGTTCTTGGAAAAGG+TGG 0.543414 6_3:-8763111 Msa0937430:CDS
TGCTGGAGGCAGTGGCTATG+GGG 0.543670 6_3:-8761037 Msa0937430:CDS
GGTAGTATTATTGGTAGGGG+AGG 0.545293 6_3:-8763402 Msa0937430:CDS
ATGTTCTTAACTATGACAGT+AGG 0.545503 6_3:-8761287 Msa0937430:CDS
AAAAGCAAATTACTCTGCAA+AGG 0.545852 6_3:+8763641 None:intergenic
CACAAGCTCATCAGATCTCA+AGG 0.546895 6_3:+8763011 None:intergenic
ATGAAAGTTATTCTTTGGGA+CGG 0.554070 6_3:-8761011 Msa0937430:CDS
GGCTGCCTTATTGGTAAAGG+AGG 0.555181 6_3:-8761668 Msa0937430:CDS
ACAATCGGAGGTCCTGCAGT+TGG 0.556185 6_3:+8762283 None:intergenic
TCAAATAAGGCAGGATTCTG+GGG 0.561605 6_3:-8762077 Msa0937430:CDS
CTATTATAACTGAGATGAGA+AGG 0.563633 6_3:-8761643 Msa0937430:CDS
CAACAGCTTAGCATTCACTT+GGG 0.570262 6_3:+8763152 None:intergenic
TCATATTCAAGTGGCTATGG+AGG 0.574440 6_3:-8761237 Msa0937430:CDS
GGAAATAAAAGGAGGAATGG+AGG 0.578539 6_3:-8763507 Msa0937430:CDS
GAGCATCTTTGGCAACATCA+AGG 0.578808 6_3:+8761418 None:intergenic
AGGTGATCATGACAGGGATA+GGG 0.581436 6_3:-8763487 Msa0937430:CDS
GAGATCTGATGAGCTTGTGC+AGG 0.581694 6_3:-8763007 Msa0937430:intron
TGTTCTTAACTATGACAGTA+GGG 0.584516 6_3:-8761286 Msa0937430:CDS
ACGCTTGTCACCGTCATCAA+CGG 0.584883 6_3:+8763263 None:intergenic
GCCACCACGGTCTATGTACT+CGG 0.588324 6_3:-8762203 Msa0937430:CDS
TCGTCGGCAGAAGAGAAAGA+AGG 0.589967 6_3:+8764589 None:intergenic
TGGAAGCTATGCAAGTTCAC+AGG 0.592262 6_3:-8761184 Msa0937430:intron
TGATGATGATGAAATGGTGC+AGG 0.592383 6_3:-8761564 Msa0937430:intron
CCTAAATTGTGACATTACAA+AGG 0.593952 6_3:-8764615 Msa0937430:five_prime_UTR
CTTTCCCTATCACGCCGCCA+AGG 0.595068 6_3:+8762116 None:intergenic
GGCGTGATAGGGAAAGGTGG+AGG 0.595333 6_3:-8762109 Msa0937430:CDS
CCTTCTGTATATCCCAGTGG+TGG 0.597909 6_3:-8762319 Msa0937430:CDS
ACGCCGCCAAGGTTTCCAGT+TGG 0.598483 6_3:+8762127 None:intergenic
CTGCAGGACCTCCGATTGTG+GGG 0.600727 6_3:-8762279 Msa0937430:CDS
TGCTGATGATACCAACAGAC+GGG 0.600814 6_3:+8761697 None:intergenic
ATACTACCAATCTTTCTCCC+CGG 0.602117 6_3:+8763417 None:intergenic
CGCGGACATTCATATTCAAG+TGG 0.603264 6_3:-8761246 Msa0937430:CDS
ACTAAGGCTAAGATTAGGAT+CGG 0.603797 6_3:-8763351 Msa0937430:CDS
GTTTAAGATTCATGATAGGG+TGG 0.605100 6_3:-8763217 Msa0937430:CDS
CAGTCTGACTATGACGGCGG+AGG 0.605462 6_3:-8763528 Msa0937430:CDS
CTTGGCGGCGTGATAGGGAA+AGG 0.608891 6_3:-8762115 Msa0937430:CDS
CCAAGTGAATGCTAAGCTGT+TGG 0.609071 6_3:-8763151 Msa0937430:CDS
ACACAACCTATCTGATCAGA+CGG 0.614388 6_3:+8763126 None:intergenic
TTGGTGCCGTCTGATCAGAT+AGG 0.616736 6_3:-8763132 Msa0937430:CDS
CAAGCGTGTGTCACCTGCTG+AGG 0.619017 6_3:-8763247 Msa0937430:CDS
TCCGCCGTCATAGTCAGACT+GGG 0.620527 6_3:+8763530 None:intergenic
AAGAAGCTTACAGTAGAGAG+AGG 0.621099 6_3:+8764545 None:intergenic
GTTTATCTGTAGCTTGCTGG+AGG 0.621253 6_3:-8761051 Msa0937430:intron
CCCATGAGTGAACCACCACT+GGG 0.622023 6_3:+8762307 None:intergenic
TTTGAAATTCCAGATTTCTG+GGG 0.622285 6_3:-8762434 Msa0937430:intron
TAGCTTCCATAAGTGTCACC+AGG 0.622851 6_3:+8761198 None:intergenic
GTAGAACTGGAAGGAATCCA+GGG 0.623782 6_3:+8761340 None:intergenic
CCACCACTGGGATATACAGA+AGG 0.625832 6_3:+8762319 None:intergenic
AGATTTACAGAGTGATCAGG+AGG 0.626003 6_3:-8763187 Msa0937430:CDS
GAATATATGGTAGAACTGGA+AGG 0.628048 6_3:+8761331 None:intergenic
ACACTGGTGACTGGCCACCA+CGG 0.629129 6_3:-8762216 Msa0937430:CDS
AACTTTCTCTCCAACCGTAG+AGG 0.630582 6_3:-8761789 Msa0937430:CDS
GCATCGGGGTTGTAAAAGCA+CGG 0.631796 6_3:+8761763 None:intergenic
AGTAGGGATGTCAAAAGACA+TGG 0.639502 6_3:-8761270 Msa0937430:CDS
AGTAAATGCTGAGTTCGAGA+AGG 0.640016 6_3:+8762355 None:intergenic
TCATAGTCAGACTGGGATCG+AGG 0.646653 6_3:+8763537 None:intergenic
GGAGGAAATAAAAGGAGGAA+TGG 0.646980 6_3:-8763510 Msa0937430:CDS
AACAGCTTAGCATTCACTTG+GGG 0.647144 6_3:+8763153 None:intergenic
AGTGATCAGGAGGAAGAAGG+TGG 0.649638 6_3:-8763177 Msa0937430:CDS
GTGCTGATGATACCAACAGA+CGG 0.649949 6_3:+8761696 None:intergenic
GTTGTGTTCTTGGAAAAGGT+GGG 0.650534 6_3:-8763110 Msa0937430:CDS
GGCGGCGTGATAGGGAAAGG+TGG 0.656757 6_3:-8762112 Msa0937430:CDS
AGCGCGGAAGTAAAAGTCGT+CGG 0.660065 6_3:+8764573 None:intergenic
GGAGCCATCCCCACAATCGG+AGG 0.661378 6_3:+8762271 None:intergenic
GGTCTATGTACTCGGCTCCG+AGG 0.667191 6_3:-8762195 Msa0937430:CDS
GAATGGAGGTGATCATGACA+GGG 0.670403 6_3:-8763493 Msa0937430:CDS
TCAGATCTCAAGGCACACGC+AGG 0.670810 6_3:+8763021 None:intergenic
TCCCAGTCTGACTATGACGG+CGG 0.676497 6_3:-8763531 Msa0937430:CDS
GTTCCTTCTGTATATCCCAG+TGG 0.681069 6_3:-8762322 Msa0937430:CDS
GTAGAGAGAGGATTGAAGCG+CGG 0.684929 6_3:+8764557 None:intergenic
GAGACTAATACCGTTGATGA+CGG 0.687011 6_3:-8763273 Msa0937430:CDS
CGATCCCAGTCTGACTATGA+CGG 0.688162 6_3:-8763534 Msa0937430:CDS
ACAACACGCTCATCGCACCC+CGG 0.688306 6_3:+8763318 None:intergenic
GAATTTACGTAGTGAAACTG+GGG 0.692457 6_3:-8763076 Msa0937430:CDS
ACGGCGGAGGAAATAAAAGG+AGG 0.710850 6_3:-8763515 Msa0937430:CDS
GGATCGGTGAGACTGTGCCG+GGG 0.718334 6_3:-8763335 Msa0937430:CDS
GATGTCAAAAGACATGGACG+CGG 0.735664 6_3:-8761264 Msa0937430:CDS
GCCGAGTACATAGACCGTGG+TGG 0.741429 6_3:+8762202 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATTTTATAATGTTAG+CGG - chr6_3:8762705-8762724 Msa0937430:intron 10.0%
!! ATTGGAAATTGAAAAAATTA+GGG + chr6_3:8761202-8761221 None:intergenic 15.0%
!! AATTGGAAATTGAAAAAATT+AGG + chr6_3:8761203-8761222 None:intergenic 15.0%
!!! TCAATGGAAAAATTTAAAAT+TGG + chr6_3:8761220-8761239 None:intergenic 15.0%
!!! AAAATTTGCTTAATTTCTTA+TGG - chr6_3:8761281-8761300 Msa0937430:CDS 15.0%
!!! AAATTTGCTTAATTTCTTAT+GGG - chr6_3:8761282-8761301 Msa0937430:CDS 15.0%
!!! TTTTTGTTGAAATTGTAATT+TGG - chr6_3:8761334-8761353 Msa0937430:CDS 15.0%
!!! ATTTTTTAAATTTTTGGACA+TGG - chr6_3:8761376-8761395 Msa0937430:CDS 15.0%
!!! ATCCTTTTTATTATCTTTTA+AGG - chr6_3:8761402-8761421 Msa0937430:CDS 15.0%
!! AACCTTAAAAGATAATAAAA+AGG + chr6_3:8761407-8761426 None:intergenic 15.0%
!!! AAAAGTTTTGAATTTGATTA+AGG - chr6_3:8761546-8761565 Msa0937430:intron 15.0%
!! TGAATATATTATGTATGATT+TGG - chr6_3:8761620-8761639 Msa0937430:CDS 15.0%
!! AAGAAAGAAAAAAAATCTAA+AGG + chr6_3:8761724-8761743 None:intergenic 15.0%
!!! TTTTTTCAAATATATCCATA+AGG - chr6_3:8762843-8762862 Msa0937430:intron 15.0%
!!! TTTTTCAAATATATCCATAA+GGG - chr6_3:8762844-8762863 Msa0937430:intron 15.0%
!! TTTCACATATTAAGAAAAAT+AGG + chr6_3:8762951-8762970 None:intergenic 15.0%
!! TGATGAATGAAATGAAAAAT+TGG + chr6_3:8761118-8761137 None:intergenic 20.0%
!! TAACTTAACACTAAAATCAA+TGG + chr6_3:8761236-8761255 None:intergenic 20.0%
!!! ATCTTTTAAGGTTTATGAAT+TGG - chr6_3:8761414-8761433 Msa0937430:CDS 20.0%
!!! TCTTTTAAGGTTTATGAATT+GGG - chr6_3:8761415-8761434 Msa0937430:CDS 20.0%
!!! ACAGCTTTTTTAATGAAAAA+AGG + chr6_3:8761823-8761842 None:intergenic 20.0%
!! CGAATATATTATGTAAGATT+TGG - chr6_3:8761885-8761904 Msa0937430:intron 20.0%
!!! TTTTCATCTTTTTTGACTTT+AGG - chr6_3:8761934-8761953 Msa0937430:intron 20.0%
!! CAAAGAGAAAGAAATAATTA+TGG - chr6_3:8762046-8762065 Msa0937430:CDS 20.0%
!!! ATTGTTTAAGATTCATGATA+GGG - chr6_3:8762393-8762412 Msa0937430:CDS 20.0%
!!! AAATCAAACTTTTACATTCA+GGG + chr6_3:8762783-8762802 None:intergenic 20.0%
!!! TTATAATGAGTTTTCCTTAT+TGG - chr6_3:8763155-8763174 Msa0937430:CDS 20.0%
!!! TTTTTGTTCTATTACAATTG+TGG - chr6_3:8763657-8763676 Msa0937430:five_prime_UTR 20.0%
!! AAATAACATTTCCATTTCAT+TGG + chr6_3:8763718-8763737 None:intergenic 20.0%
! ATGAAATGAAAAATTGGTGA+TGG + chr6_3:8761112-8761131 None:intergenic 25.0%
! AGACTAATAATTTAGTGTGA+TGG - chr6_3:8761574-8761593 Msa0937430:CDS 25.0%
! GACTAATAATTTAGTGTGAT+GGG - chr6_3:8761575-8761594 Msa0937430:CDS 25.0%
!! AGAAAGATTGGTAGTATTAT+TGG - chr6_3:8762202-8762221 Msa0937430:CDS 25.0%
!! CATTGTTTAAGATTCATGAT+AGG - chr6_3:8762392-8762411 Msa0937430:CDS 25.0%
!! GAAATCAAACTTTTACATTC+AGG + chr6_3:8762784-8762803 None:intergenic 25.0%
! TAGGTTATTCATACACAAAA+TGG - chr6_3:8762902-8762921 Msa0937430:intron 25.0%
! ATATGTGAAAATTGCAAAAG+AGG - chr6_3:8762961-8762980 Msa0937430:intron 25.0%
!!! TTTTGAAATTCCAGATTTCT+GGG - chr6_3:8763178-8763197 Msa0937430:CDS 25.0%
!! AAAAGAATTTTCAGTTCGAT+TGG - chr6_3:8763458-8763477 Msa0937430:CDS 25.0%
! GAGGCATAATAAATCAAATA+AGG - chr6_3:8763523-8763542 Msa0937430:CDS 25.0%
! CATAATAAATCAAATAAGGC+AGG - chr6_3:8763527-8763546 Msa0937430:CDS 25.0%
! AATAACCATTTCAACTAAAG+AGG - chr6_3:8763602-8763621 Msa0937430:five_prime_UTR 25.0%
! AAAAATGAAAAATTGTCCAC+GGG + chr6_3:8763642-8763661 None:intergenic 25.0%
! CAAAAATGAAAAATTGTCCA+CGG + chr6_3:8763643-8763662 None:intergenic 25.0%
!!! ACTTTTTTTCTCACTTTGTT+TGG - chr6_3:8764079-8764098 Msa0937430:intron 25.0%
!! AAAATTTTGTCCTATAATGC+TGG - chr6_3:8764133-8764152 Msa0937430:intron 25.0%
! TGTTCTTCAAAAATCAGATT+TGG + chr6_3:8764468-8764487 None:intergenic 25.0%
! GACTATGAAAGTTATTCTTT+GGG - chr6_3:8764598-8764617 Msa0937430:five_prime_UTR 25.0%
CCTTTGTAATGTCACAATTT+AGG + chr6_3:8761001-8761020 None:intergenic 30.0%
CCTAAATTGTGACATTACAA+AGG - chr6_3:8760998-8761017 Msa0937430:CDS 30.0%
! TAATAATTTAGTGTGATGGG+TGG - chr6_3:8761578-8761597 Msa0937430:CDS 30.0%
! TCTTTCAGATTCTCAGTTTT+TGG - chr6_3:8761740-8761759 Msa0937430:CDS 30.0%
AAAAGCAAATTACTCTGCAA+AGG + chr6_3:8761975-8761994 None:intergenic 30.0%
! ACACTAAGAATTTTCTGTGA+TGG - chr6_3:8762018-8762037 Msa0937430:CDS 30.0%
! CACTAAGAATTTTCTGTGAT+GGG - chr6_3:8762019-8762038 Msa0937430:CDS 30.0%
! AGATTGGTAGTATTATTGGT+AGG - chr6_3:8762206-8762225 Msa0937430:CDS 30.0%
! GATTGGTAGTATTATTGGTA+GGG - chr6_3:8762207-8762226 Msa0937430:CDS 30.0%
! ATTGGTAGTATTATTGGTAG+GGG - chr6_3:8762208-8762227 Msa0937430:CDS 30.0%
TGAGATAGTTAAGCAATTGA+GGG - chr6_3:8762234-8762253 Msa0937430:CDS 30.0%
TAGAAACTAAGGCTAAGATT+AGG - chr6_3:8762257-8762276 Msa0937430:CDS 30.0%
AGAATTTACGTAGTGAAACT+GGG - chr6_3:8762536-8762555 Msa0937430:intron 30.0%
TTCAAAAGGGGCTATATTTA+GGG + chr6_3:8762749-8762768 None:intergenic 30.0%
TTTCAAAAGGGGCTATATTT+AGG + chr6_3:8762750-8762769 None:intergenic 30.0%
!! GACAAATTGCTTTTCAAAAG+GGG + chr6_3:8762761-8762780 None:intergenic 30.0%
!! GGACAAATTGCTTTTCAAAA+GGG + chr6_3:8762762-8762781 None:intergenic 30.0%
AAATATATCCATAAGGGTCT+TGG - chr6_3:8762850-8762869 Msa0937430:intron 30.0%
TAAGCTCATTCATACACATT+AGG - chr6_3:8762883-8762902 Msa0937430:intron 30.0%
TGCAAAAGAGGCTTATAATA+AGG - chr6_3:8762973-8762992 Msa0937430:intron 30.0%
GCAAAAGAGGCTTATAATAA+GGG - chr6_3:8762974-8762993 Msa0937430:intron 30.0%
CAAAAGTAGTAATTGCTATC+TGG - chr6_3:8763006-8763025 Msa0937430:intron 30.0%
! TGATTTTGTCCAACAATTGT+AGG - chr6_3:8763035-8763054 Msa0937430:CDS 30.0%
CTGGAATTTCAAAACCAATA+AGG + chr6_3:8763172-8763191 None:intergenic 30.0%
!!! GTTTTGAAATTCCAGATTTC+TGG - chr6_3:8763177-8763196 Msa0937430:CDS 30.0%
! TTTGAAATTCCAGATTTCTG+GGG - chr6_3:8763179-8763198 Msa0937430:CDS 30.0%
!! AAAGTTGATAGTTCTGCAAA+AGG - chr6_3:8763567-8763586 Msa0937430:CDS 30.0%
ACATTTCCATTTCATTGGAA+CGG + chr6_3:8763713-8763732 None:intergenic 30.0%
!! GAAATGGAAATGTTATTTCC+TGG - chr6_3:8763720-8763739 Msa0937430:intron 30.0%
!!! TTTCACTTTTTTCACTGCAT+CGG + chr6_3:8763869-8763888 None:intergenic 30.0%
GAAAAAAGTGAAAGAGATTC+TGG - chr6_3:8763876-8763895 Msa0937430:intron 30.0%
CTATTATAACTGAGATGAGA+AGG - chr6_3:8763970-8763989 Msa0937430:intron 30.0%
! TCATCATCAGAAGCAATTTT+AGG + chr6_3:8764038-8764057 None:intergenic 30.0%
!! AGTACTTTTTATCACACAGA+AGG + chr6_3:8764113-8764132 None:intergenic 30.0%
TCTAATCAAGAAAGCAGATA+CGG + chr6_3:8764165-8764184 None:intergenic 30.0%
CTGCTTTCTTGATTAGATTT+CGG - chr6_3:8764168-8764187 Msa0937430:intron 30.0%
TGCTTTCTTGATTAGATTTC+GGG - chr6_3:8764169-8764188 Msa0937430:intron 30.0%
ATGTTCTTAACTATGACAGT+AGG - chr6_3:8764326-8764345 Msa0937430:intron 30.0%
TGTTCTTAACTATGACAGTA+GGG - chr6_3:8764327-8764346 Msa0937430:intron 30.0%
CGGAACAATATTACAAACAA+CGG + chr6_3:8764543-8764562 None:intergenic 30.0%
GGACTATGAAAGTTATTCTT+TGG - chr6_3:8764597-8764616 Msa0937430:five_prime_UTR 30.0%
! ATGAAAGTTATTCTTTGGGA+CGG - chr6_3:8764602-8764621 Msa0937430:five_prime_UTR 30.0%
! AGTTCGCATATGTTTGTTAC+AGG + chr6_3:8761769-8761788 None:intergenic 35.0%
!! TAAGAATTTTCTGTGATGGG+TGG - chr6_3:8762022-8762041 Msa0937430:CDS 35.0%
GGAGCAGTTTGTGATTAATA+AGG - chr6_3:8762147-8762166 Msa0937430:CDS 35.0%
! TGTTTTTCGCTATTTGTGTC+CGG - chr6_3:8762177-8762196 Msa0937430:CDS 35.0%
GTGAGATAGTTAAGCAATTG+AGG - chr6_3:8762233-8762252 Msa0937430:CDS 35.0%
ACTAAGGCTAAGATTAGGAT+CGG - chr6_3:8762262-8762281 Msa0937430:CDS 35.0%
! GTTTAAGATTCATGATAGGG+TGG - chr6_3:8762396-8762415 Msa0937430:CDS 35.0%
TGAAGATTTACAGAGTGATC+AGG - chr6_3:8762423-8762442 Msa0937430:CDS 35.0%
ATAGGTTGTGTTCTTGGAAA+AGG - chr6_3:8762499-8762518 Msa0937430:intron 35.0%
CAGAATTTACGTAGTGAAAC+TGG - chr6_3:8762535-8762554 Msa0937430:intron 35.0%
GAATTTACGTAGTGAAACTG+GGG - chr6_3:8762537-8762556 Msa0937430:intron 35.0%
!! GGGACAAATTGCTTTTCAAA+AGG + chr6_3:8762763-8762782 None:intergenic 35.0%
AAGAGGCTTATAATAAGGGA+TGG - chr6_3:8762978-8762997 Msa0937430:intron 35.0%
GAAGAAGATATTTCATCCCT+CGG + chr6_3:8763438-8763457 None:intergenic 35.0%
AATCAAATAAGGCAGGATTC+TGG - chr6_3:8763534-8763553 Msa0937430:CDS 35.0%
ATCAAATAAGGCAGGATTCT+GGG - chr6_3:8763535-8763554 Msa0937430:CDS 35.0%
TGCAGAACTATCAACTTTGA+TGG + chr6_3:8763565-8763584 None:intergenic 35.0%
GTTCACCTCTTTAGTTGAAA+TGG + chr6_3:8763610-8763629 None:intergenic 35.0%
CTATTACAATTGTGGTTGTG+AGG - chr6_3:8763665-8763684 Msa0937430:intron 35.0%
AATTTGCCGTTCCAATGAAA+TGG - chr6_3:8763704-8763723 Msa0937430:intron 35.0%
ACAAACAAAAATTGCAAGCC+AGG + chr6_3:8763741-8763760 None:intergenic 35.0%
!!! TTCACTTTTTTCACTGCATC+GGG + chr6_3:8763868-8763887 None:intergenic 35.0%
TAGATCCTCCTTTACCAATA+AGG + chr6_3:8763953-8763972 None:intergenic 35.0%
CTTTGACAGTATGCGAATAT+TGG + chr6_3:8764006-8764025 None:intergenic 35.0%
CAATATTCGCATACTGTCAA+AGG - chr6_3:8764004-8764023 Msa0937430:intron 35.0%
! TGCTTCTGATGATGATGAAA+TGG - chr6_3:8764043-8764062 Msa0937430:intron 35.0%
CTAATCAAGAAAGCAGATAC+GGG + chr6_3:8764164-8764183 None:intergenic 35.0%
GAATATATGGTAGAACTGGA+AGG + chr6_3:8764285-8764304 None:intergenic 35.0%
CTGTCATAGTTAAGAACATC+TGG + chr6_3:8764325-8764344 None:intergenic 35.0%
CATTCATATTCAAGTGGCTA+TGG - chr6_3:8764373-8764392 Msa0937430:intron 35.0%
AAACAACGGATGAGAGATAA+TGG + chr6_3:8764529-8764548 None:intergenic 35.0%
AAGAAGCTTACAGTAGAGAG+AGG + chr6_3:8761071-8761090 None:intergenic 40.0%
TTGGGTTCAGAGATTTGTAG+TGG - chr6_3:8761433-8761452 Msa0937430:intron 40.0%
CTGTAACAAACGAGCTCATT+TGG - chr6_3:8761839-8761858 Msa0937430:intron 40.0%
GGAGGAAATAAAAGGAGGAA+TGG - chr6_3:8762103-8762122 Msa0937430:CDS 40.0%
GGAAATAAAAGGAGGAATGG+AGG - chr6_3:8762106-8762125 Msa0937430:CDS 40.0%
! GTTTTTCGCTATTTGTGTCC+GGG - chr6_3:8762178-8762197 Msa0937430:CDS 40.0%
! TTTTTCGCTATTTGTGTCCG+GGG - chr6_3:8762179-8762198 Msa0937430:CDS 40.0%
ATACTACCAATCTTTCTCCC+CGG + chr6_3:8762199-8762218 None:intergenic 40.0%
GCAATTGAGGGTAGAAACTA+AGG - chr6_3:8762246-8762265 Msa0937430:CDS 40.0%
! GAGACTAATACCGTTGATGA+CGG - chr6_3:8762340-8762359 Msa0937430:CDS 40.0%
TTAAACAATGCATCCTCAGC+AGG + chr6_3:8762382-8762401 None:intergenic 40.0%
AGATTTACAGAGTGATCAGG+AGG - chr6_3:8762426-8762445 Msa0937430:intron 40.0%
AACAGCTTAGCATTCACTTG+GGG + chr6_3:8762463-8762482 None:intergenic 40.0%
CAACAGCTTAGCATTCACTT+GGG + chr6_3:8762464-8762483 None:intergenic 40.0%
ACACAACCTATCTGATCAGA+CGG + chr6_3:8762490-8762509 None:intergenic 40.0%
GATCAGATAGGTTGTGTTCT+TGG - chr6_3:8762493-8762512 Msa0937430:intron 40.0%
GTTGTGTTCTTGGAAAAGGT+GGG - chr6_3:8762503-8762522 Msa0937430:intron 40.0%
GGCTCAGATTCGTATTCTTA+AGG - chr6_3:8762558-8762577 Msa0937430:intron 40.0%
GCTATATTTAGGGATAGAGG+TGG + chr6_3:8762739-8762758 None:intergenic 40.0%
TTCATCTTCCAAGACCCTTA+TGG + chr6_3:8762861-8762880 None:intergenic 40.0%
AGGCTTATAATAAGGGATGG+AGG - chr6_3:8762981-8763000 Msa0937430:intron 40.0%
GGCTTATAATAAGGGATGGA+GGG - chr6_3:8762982-8763001 Msa0937430:intron 40.0%
ACTACTGCACCTACAATTGT+TGG + chr6_3:8763047-8763066 None:intergenic 40.0%
AGTAAATGCTGAGTTCGAGA+AGG + chr6_3:8763261-8763280 None:intergenic 40.0%
TCTCGAACTCAGCATTTACT+TGG - chr6_3:8763261-8763280 Msa0937430:CDS 40.0%
TCACCTTTATATCCCCCATA+AGG + chr6_3:8763378-8763397 None:intergenic 40.0%
TCAAATAAGGCAGGATTCTG+GGG - chr6_3:8763536-8763555 Msa0937430:CDS 40.0%
!!! TCACTTTTTTCACTGCATCG+GGG + chr6_3:8763867-8763886 None:intergenic 40.0%
TTGGTATCATCAGCACGAAT+TGG - chr6_3:8763924-8763943 Msa0937430:intron 40.0%
! ATTGGCTGCCTTATTGGTAA+AGG - chr6_3:8763942-8763961 Msa0937430:intron 40.0%
! TGATGATGATGAAATGGTGC+AGG - chr6_3:8764049-8764068 Msa0937430:intron 40.0%
ATGATGAAATGGTGCAGGTA+AGG - chr6_3:8764054-8764073 Msa0937430:intron 40.0%
TGATGAAATGGTGCAGGTAA+GGG - chr6_3:8764055-8764074 Msa0937430:intron 40.0%
!! AACTTGCACAAGAGCATCTT+TGG + chr6_3:8764209-8764228 None:intergenic 40.0%
! AGCAAACCTTTTCGATAGAG+AGG - chr6_3:8764243-8764262 Msa0937430:intron 40.0%
! GCAAACCTTTTCGATAGAGA+GGG - chr6_3:8764244-8764263 Msa0937430:intron 40.0%
GCAGGAATATATGGTAGAAC+TGG + chr6_3:8764289-8764308 None:intergenic 40.0%
TCTACTGGAGCAGGAATATA+TGG + chr6_3:8764298-8764317 None:intergenic 40.0%
TATATTCCTGCTCCAGTAGA+TGG - chr6_3:8764298-8764317 Msa0937430:intron 40.0%
AGTAGGGATGTCAAAAGACA+TGG - chr6_3:8764343-8764362 Msa0937430:intron 40.0%
TCATATTCAAGTGGCTATGG+AGG - chr6_3:8764376-8764395 Msa0937430:intron 40.0%
TATGGAGGCTCAAGTGATTT+AGG - chr6_3:8764391-8764410 Msa0937430:intron 40.0%
TCCAGCAAGCTACAGATAAA+CGG + chr6_3:8764563-8764582 None:intergenic 40.0%
!! GGGTGGTCAAAGAGAGTATT+TGG - chr6_3:8761595-8761614 Msa0937430:CDS 45.0%
ATGACGGCGGAGGAAATAAA+AGG - chr6_3:8762095-8762114 Msa0937430:CDS 45.0%
GAATGGAGGTGATCATGACA+GGG - chr6_3:8762120-8762139 Msa0937430:CDS 45.0%
AGGTGATCATGACAGGGATA+GGG - chr6_3:8762126-8762145 Msa0937430:CDS 45.0%
GGTAGTATTATTGGTAGGGG+AGG - chr6_3:8762211-8762230 Msa0937430:CDS 45.0%
CCAACAGCTTAGCATTCACT+TGG + chr6_3:8762465-8762484 None:intergenic 45.0%
CCAAGTGAATGCTAAGCTGT+TGG - chr6_3:8762462-8762481 Msa0937430:intron 45.0%
GGTTGTGTTCTTGGAAAAGG+TGG - chr6_3:8762502-8762521 Msa0937430:intron 45.0%
CACAAGCTCATCAGATCTCA+AGG + chr6_3:8762605-8762624 None:intergenic 45.0%
GCTTGTGCAGGTAAGTTAGA+TGG - chr6_3:8762618-8762637 Msa0937430:intron 45.0%
GGGGCTATATTTAGGGATAG+AGG + chr6_3:8762742-8762761 None:intergenic 45.0%
GGATGCTGCAGTTGTGAAAA+AGG - chr6_3:8763200-8763219 Msa0937430:CDS 45.0%
GTTCCTTCTGTATATCCCAG+TGG - chr6_3:8763291-8763310 Msa0937430:CDS 45.0%
CTCCTCTTGTTGGTCCTTAT+GGG - chr6_3:8763361-8763380 Msa0937430:CDS 45.0%
TCCTCTTGTTGGTCCTTATG+GGG - chr6_3:8763362-8763381 Msa0937430:CDS 45.0%
GGTCCTTATGGGGGATATAA+AGG - chr6_3:8763372-8763391 Msa0937430:CDS 45.0%
ATAAAGGTGACACTGGTGAC+TGG - chr6_3:8763388-8763407 Msa0937430:CDS 45.0%
!! GTTCGATTGGTTTGTCCAAC+TGG - chr6_3:8763471-8763490 Msa0937430:CDS 45.0%
GTTTGTCCAACTGGAAACCT+TGG - chr6_3:8763480-8763499 Msa0937430:CDS 45.0%
GGTGAACTATTAATCACCCG+TGG - chr6_3:8763623-8763642 Msa0937430:five_prime_UTR 45.0%
AACTTTCTCTCCAACCGTAG+AGG - chr6_3:8763824-8763843 Msa0937430:intron 45.0%
! CTCTTTTACTACCCGTCTGT+TGG - chr6_3:8763905-8763924 Msa0937430:intron 45.0%
TGCTGATGATACCAACAGAC+GGG + chr6_3:8763919-8763938 None:intergenic 45.0%
! GTGCTGATGATACCAACAGA+CGG + chr6_3:8763920-8763939 None:intergenic 45.0%
GAGCATCTTTGGCAACATCA+AGG + chr6_3:8764198-8764217 None:intergenic 45.0%
GTAGAACTGGAAGGAATCCA+GGG + chr6_3:8764276-8764295 None:intergenic 45.0%
AGAACATCTGGACCATCTAC+TGG + chr6_3:8764313-8764332 None:intergenic 45.0%
GATGTCAAAAGACATGGACG+CGG - chr6_3:8764349-8764368 Msa0937430:intron 45.0%
CGCGGACATTCATATTCAAG+TGG - chr6_3:8764367-8764386 Msa0937430:intron 45.0%
TTAGGTCCTGGTGACACTTA+TGG - chr6_3:8764409-8764428 Msa0937430:intron 45.0%
TAGCTTCCATAAGTGTCACC+AGG + chr6_3:8764418-8764437 None:intergenic 45.0%
TGGAAGCTATGCAAGTTCAC+AGG - chr6_3:8764429-8764448 Msa0937430:intron 45.0%
! TCCGTTTATCTGTAGCTTGC+TGG - chr6_3:8764559-8764578 Msa0937430:five_prime_UTR 45.0%
!! GTTTATCTGTAGCTTGCTGG+AGG - chr6_3:8764562-8764581 Msa0937430:five_prime_UTR 45.0%
TGGGACGGAATAGTACTGTT+TGG - chr6_3:8764617-8764636 Msa0937430:five_prime_UTR 45.0%
!!! TTTTTTTTAATTTTTCAATT+TGG - chr6_3:8761173-8761192 Msa0937430:intron 5.0%
!!! ACTAATATTTTTTAAATTTT+TGG - chr6_3:8761370-8761389 Msa0937430:CDS 5.0%
!! TTATAAAATATTATTTAACA+AGG + chr6_3:8762699-8762718 None:intergenic 5.0%
TCGTCGGCAGAAGAGAAAGA+AGG + chr6_3:8761027-8761046 None:intergenic 50.0%
AGCGCGGAAGTAAAAGTCGT+CGG + chr6_3:8761043-8761062 None:intergenic 50.0%
GTAGAGAGAGGATTGAAGCG+CGG + chr6_3:8761059-8761078 None:intergenic 50.0%
TCATAGTCAGACTGGGATCG+AGG + chr6_3:8762079-8762098 None:intergenic 50.0%
CGATCCCAGTCTGACTATGA+CGG - chr6_3:8762079-8762098 Msa0937430:CDS 50.0%
ACGGCGGAGGAAATAAAAGG+AGG - chr6_3:8762098-8762117 Msa0937430:CDS 50.0%
GGAATGGAGGTGATCATGAC+AGG - chr6_3:8762119-8762138 Msa0937430:CDS 50.0%
GAGGTGATCATGACAGGGAT+AGG - chr6_3:8762125-8762144 Msa0937430:CDS 50.0%
TTGTGTCCGGGGAGAAAGAT+TGG - chr6_3:8762190-8762209 Msa0937430:CDS 50.0%
ACGCTTGTCACCGTCATCAA+CGG + chr6_3:8762353-8762372 None:intergenic 50.0%
CAGAGTGATCAGGAGGAAGA+AGG - chr6_3:8762433-8762452 Msa0937430:intron 50.0%
AGTGATCAGGAGGAAGAAGG+TGG - chr6_3:8762436-8762455 Msa0937430:intron 50.0%
!! TTGGTGCCGTCTGATCAGAT+AGG - chr6_3:8762481-8762500 Msa0937430:intron 50.0%
GAGATCTGATGAGCTTGTGC+AGG - chr6_3:8762606-8762625 Msa0937430:intron 50.0%
CCACCACTGGGATATACAGA+AGG + chr6_3:8763297-8763316 None:intergenic 50.0%
CCTTCTGTATATCCCAGTGG+TGG - chr6_3:8763294-8763313 Msa0937430:CDS 50.0%
GCTCCTCTTGTTGGTCCTTA+TGG - chr6_3:8763360-8763379 Msa0937430:CDS 50.0%
CCTCTTGTTGGTCCTTATGG+GGG - chr6_3:8763363-8763382 Msa0937430:CDS 50.0%
GGGGGATATAAAGGTGACAC+TGG - chr6_3:8763381-8763400 Msa0937430:CDS 50.0%
TGTCCAACTGGAAACCTTGG+CGG - chr6_3:8763483-8763502 Msa0937430:CDS 50.0%
! TAAAAGCACGGCTGCCTCTA+CGG + chr6_3:8763841-8763860 None:intergenic 50.0%
GCATCGGGGTTGTAAAAGCA+CGG + chr6_3:8763853-8763872 None:intergenic 50.0%
GCACGAATTGGCTGCCTTAT+TGG - chr6_3:8763936-8763955 Msa0937430:intron 50.0%
! GGCTGCCTTATTGGTAAAGG+AGG - chr6_3:8763945-8763964 Msa0937430:intron 50.0%
ACGGGCAAAGCCAGCATTAT+AGG + chr6_3:8764146-8764165 None:intergenic 50.0%
CAGCACCCTCTCTATCGAAA+AGG + chr6_3:8764252-8764271 None:intergenic 50.0%
GGTAGAACTGGAAGGAATCC+AGG + chr6_3:8764277-8764296 None:intergenic 50.0%
GGCTCAAGTGATTTAGGTCC+TGG - chr6_3:8764397-8764416 Msa0937430:intron 50.0%
TCCCAGTCTGACTATGACGG+CGG - chr6_3:8762082-8762101 Msa0937430:CDS 55.0%
TCCGCCGTCATAGTCAGACT+GGG + chr6_3:8762086-8762105 None:intergenic 55.0%
TAGGATCGGTGAGACTGTGC+CGG - chr6_3:8762276-8762295 Msa0937430:CDS 55.0%
TCAGATCTCAAGGCACACGC+AGG + chr6_3:8762595-8762614 None:intergenic 55.0%
CTGCAGCATCCCCAGAAATC+TGG + chr6_3:8763191-8763210 None:intergenic 55.0%
TCCCAGTGGTGGTTCACTCA+TGG - chr6_3:8763305-8763324 Msa0937430:CDS 55.0%
CCCATGAGTGAACCACCACT+GGG + chr6_3:8763309-8763328 None:intergenic 55.0%
CCCAGTGGTGGTTCACTCAT+GGG - chr6_3:8763306-8763325 Msa0937430:CDS 55.0%
ACCCATGAGTGAACCACCAC+TGG + chr6_3:8763310-8763329 None:intergenic 55.0%
TCACTCATGGGTCCAACTGC+AGG - chr6_3:8763318-8763337 Msa0937430:CDS 55.0%
ACAATCGGAGGTCCTGCAGT+TGG + chr6_3:8763333-8763352 None:intergenic 55.0%
AACTGCAGGACCTCCGATTG+TGG - chr6_3:8763332-8763351 Msa0937430:CDS 55.0%
ACTGCAGGACCTCCGATTGT+GGG - chr6_3:8763333-8763352 Msa0937430:CDS 55.0%
AGAGGAGCCATCCCCACAAT+CGG + chr6_3:8763348-8763367 None:intergenic 55.0%
CCCCCATAAGGACCAACAAG+AGG + chr6_3:8763366-8763385 None:intergenic 55.0%
GCCACCACGGTCTATGTACT+CGG - chr6_3:8763410-8763429 Msa0937430:CDS 55.0%
GTCTATGTACTCGGCTCCGA+GGG - chr6_3:8763419-8763438 Msa0937430:CDS 55.0%
GAAACCTTGGCGGCGTGATA+GGG - chr6_3:8763493-8763512 Msa0937430:CDS 55.0%
TCTGGACCATCTACTGGAGC+AGG + chr6_3:8764307-8764326 None:intergenic 55.0%
TTGCTGGAGGCAGTGGCTAT+GGG - chr6_3:8764575-8764594 Msa0937430:five_prime_UTR 55.0%
CTCCGCCGTCATAGTCAGAC+TGG + chr6_3:8762087-8762106 None:intergenic 60.0%
CAGTCTGACTATGACGGCGG+AGG - chr6_3:8762085-8762104 Msa0937430:CDS 60.0%
AGGATCGGTGAGACTGTGCC+GGG - chr6_3:8762277-8762296 Msa0937430:CDS 60.0%
ACAACACGCTCATCGCACCC+CGG + chr6_3:8762298-8762317 None:intergenic 60.0%
CAAGCGTGTGTCACCTGCTG+AGG - chr6_3:8762366-8762385 Msa0937430:CDS 60.0%
CTGCAGGACCTCCGATTGTG+GGG - chr6_3:8763334-8763353 Msa0937430:CDS 60.0%
AGGACCTCCGATTGTGGGGA+TGG - chr6_3:8763338-8763357 Msa0937430:CDS 60.0%
GTGGGGATGGCTCCTCTTGT+TGG - chr6_3:8763351-8763370 Msa0937430:CDS 60.0%
! ACACTGGTGACTGGCCACCA+CGG - chr6_3:8763397-8763416 Msa0937430:CDS 60.0%
GCCGAGTACATAGACCGTGG+TGG + chr6_3:8763414-8763433 None:intergenic 60.0%
GGAGCCGAGTACATAGACCG+TGG + chr6_3:8763417-8763436 None:intergenic 60.0%
GGTCTATGTACTCGGCTCCG+AGG - chr6_3:8763418-8763437 Msa0937430:CDS 60.0%
ACGCCGCCAAGGTTTCCAGT+TGG + chr6_3:8763489-8763508 None:intergenic 60.0%
GGAAACCTTGGCGGCGTGAT+AGG - chr6_3:8763492-8763511 Msa0937430:CDS 60.0%
CTTTCCCTATCACGCCGCCA+AGG + chr6_3:8763500-8763519 None:intergenic 60.0%
CTTGGCGGCGTGATAGGGAA+AGG - chr6_3:8763498-8763517 Msa0937430:CDS 60.0%
GGCGTGATAGGGAAAGGTGG+AGG - chr6_3:8763504-8763523 Msa0937430:CDS 60.0%
!! GATAGAGAGGGTGCTGTCCC+TGG - chr6_3:8764256-8764275 Msa0937430:intron 60.0%
!! CTGTAGCTTGCTGGAGGCAG+TGG - chr6_3:8764568-8764587 Msa0937430:five_prime_UTR 60.0%
CTTGCTGGAGGCAGTGGCTA+TGG - chr6_3:8764574-8764593 Msa0937430:five_prime_UTR 60.0%
TGCTGGAGGCAGTGGCTATG+GGG - chr6_3:8764576-8764595 Msa0937430:five_prime_UTR 60.0%
GGATCGGTGAGACTGTGCCG+GGG - chr6_3:8762278-8762297 Msa0937430:CDS 65.0%
GGAGCCATCCCCACAATCGG+AGG + chr6_3:8763345-8763364 None:intergenic 65.0%
GGCGGCGTGATAGGGAAAGG+TGG - chr6_3:8763501-8763520 Msa0937430:CDS 65.0%
AGCACGGCTGCCTCTACGGT+TGG + chr6_3:8763837-8763856 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 8760993 8764642 8760993 ID=Msa0937430;Name=Msa0937430
chr6_3 mRNA 8760993 8764642 8760993 ID=Msa0937430-mRNA-1;Parent=Msa0937430;Name=Msa0937430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=168|1|0.83|1|0.8|0.66|6|0|538
chr6_3 exon 8760993 8761061 8760993 ID=Msa0937430-mRNA-1:exon:2791;Parent=Msa0937430-mRNA-1
chr6_3 exon 8761185 8761451 8761185 ID=Msa0937430-mRNA-1:exon:2790;Parent=Msa0937430-mRNA-1
chr6_3 exon 8761565 8761822 8761565 ID=Msa0937430-mRNA-1:exon:2789;Parent=Msa0937430-mRNA-1
chr6_3 exon 8762012 8762443 8762012 ID=Msa0937430-mRNA-1:exon:2788;Parent=Msa0937430-mRNA-1
chr6_3 exon 8763008 8763679 8763008 ID=Msa0937430-mRNA-1:exon:2787;Parent=Msa0937430-mRNA-1
chr6_3 exon 8764556 8764642 8764556 ID=Msa0937430-mRNA-1:exon:2786;Parent=Msa0937430-mRNA-1
chr6_3 five_prime_UTR 8764556 8764642 8764556 ID=Msa0937430-mRNA-1:five_prime_utr;Parent=Msa0937430-mRNA-1
chr6_3 five_prime_UTR 8763599 8763679 8763599 ID=Msa0937430-mRNA-1:five_prime_utr;Parent=Msa0937430-mRNA-1
chr6_3 CDS 8763008 8763598 8763008 ID=Msa0937430-mRNA-1:cds;Parent=Msa0937430-mRNA-1
chr6_3 CDS 8762012 8762443 8762012 ID=Msa0937430-mRNA-1:cds;Parent=Msa0937430-mRNA-1
chr6_3 CDS 8761565 8761822 8761565 ID=Msa0937430-mRNA-1:cds;Parent=Msa0937430-mRNA-1
chr6_3 CDS 8761185 8761451 8761185 ID=Msa0937430-mRNA-1:cds;Parent=Msa0937430-mRNA-1
chr6_3 CDS 8760993 8761061 8760993 ID=Msa0937430-mRNA-1:cds;Parent=Msa0937430-mRNA-1
Gene Sequence

>Msa0937430

ATGGGTGGTCAAAGAGAAAGAAATAATTATGGTAAGCGTCCTCGATCCCAGTCTGACTATGACGGCGGAGGAAATAAAAGGAGGAATGGAGGTGATCATGACAGGGATAGGGAGCAGTTTGTGATTAATAAGGAAGATACTGTTTTTCGCTATTTGTGTCCGGGGAGAAAGATTGGTAGTATTATTGGTAGGGGAGGTGAGATAGTTAAGCAATTGAGGGTAGAAACTAAGGCTAAGATTAGGATCGGTGAGACTGTGCCGGGGTGCGATGAGCGTGTTGTTACTGTCTACAGTTCAAGTGATGAGACTAATACCGTTGATGACGGTGACAAGCGTGTGTCACCTGCTGAGGATGCATTGTTTAAGATTCATGATAGGGTGGTTGCTGAAGATTTACAGAGTGATCAGGAGGAAGAAGGTGGTCCCCAAGTGAATGCTAAGCTGTTGGTGCCGTCTGATCAGATAGGTTGTGTTCTTGGAAAAGGTGGGCAGATAGTTCAGAATTTACGTAGTGAAACTGGGGCTCAGATTCGTATTCTTAAGGATGATCACGTGCCTGCGTGTGCCTTGAGATCTGATGAGCTTGTGCAGATTTCTGGGGATGCTGCAGTTGTGAAAAAGGCTTTGCATCAAATTGCATCTCGACTTCATCATAATCCTTCTCGAACTCAGCATTTACTTGGTTCTGCTGTTCCTTCTGTATATCCCAGTGGTGGTTCACTCATGGGTCCAACTGCAGGACCTCCGATTGTGGGGATGGCTCCTCTTGTTGGTCCTTATGGGGGATATAAAGGTGACACTGGTGACTGGCCACCACGGTCTATGTACTCGGCTCCGAGGGATGAAATATCTTCTTCAAAAGAATTTTCAGTTCGATTGGTTTGTCCAACTGGAAACCTTGGCGGCGTGATAGGGAAAGGTGGAGGCATAATAAATCAAATAAGGCAGGATTCTGGGGCAACCATCAAAGTTGATAGTTCTGCAAAAGGAGATGAGTGCTTAATAACCATTTCAACTAAAGAGTTCTTTGAAGAAACTTTCTCTCCAACCGTAGAGGCAGCCGTGCTTTTACAACCCCGATGCAGTGAAAAAAGTGAAAGAGATTCTGGAATCATCTCTTTTACTACCCGTCTGTTGGTATCATCAGCACGAATTGGCTGCCTTATTGGTAAAGGAGGATCTATTATAACTGAGATGAGAAGGCTTACAAAATCCAATATTCGCATACTGTCAAAGGAAAATCTTCCTAAAATTGCTTCTGATGATGATGAAATGGTGCAGATTTCGGGAGACCTTGATGTTGCCAAAGATGCTCTTGTGCAAGTTCTTACACGATTGAGAGCAAACCTTTTCGATAGAGAGGGTGCTGTCCCTGGATTCCTTCCAGTTCTACCATATATTCCTGCTCCAGTAGATGGTCCAGATGTTCTTAACTATGACAGTAGGGATGTCAAAAGACATGGACGCGGACATTCATATTCAAGTGGCTATGGAGGCTCAAGTGATTTAGGTCCTGGTGACACTTATGGAAGCTATGCAAGTTCACAGCTTGCTGGAGGCAGTGGCTATGGGGACTATGAAAGTTATTCTTTGGGACGGAATAGTACTGTTTGGTAA

Protein sequence

>Msa0937430

MGGQRERNNYGKRPRSQSDYDGGGNKRRNGGDHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDDGDKRVSPAEDALFKIHDRVVAEDLQSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKGDTGDWPPRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGDECLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSARIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGFLPVLPYIPAPVDGPDVLNYDSRDVKRHGRGHSYSSGYGGSSDLGPGDTYGSYASSQLAGGSGYGDYESYSLGRNSTVW*