AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336040 MtrunA17_Chr7g0270131 97.943 778 12 2 1 777 1 775 0.0 1553
Msa1336040 MtrunA17_Chr2g0277821 44.920 561 275 8 70 613 341 884 2.43e-140 442
Msa1336040 MtrunA17_Chr2g0330401 50.239 418 205 3 193 609 55 470 2.86e-137 415
Msa1336040 MtrunA17_Chr4g0058591 49.315 365 183 2 192 555 160 523 1.29e-113 354
Msa1336040 MtrunA17_Chr6g0449911 42.956 433 229 7 215 644 146 563 1.08e-107 345
Msa1336040 MtrunA17_Chr2g0293631 43.961 414 218 7 211 615 467 875 3.00e-104 346
Msa1336040 MtrunA17_Chr3g0107851 41.687 403 220 5 198 587 77 477 1.89e-102 327
Msa1336040 MtrunA17_Chr4g0076491 40.498 442 238 7 190 609 241 679 2.73e-101 328
Msa1336040 MtrunA17_Chr6g0449741 40.498 442 236 8 190 609 203 639 3.26e-99 321
Msa1336040 MtrunA17_Chr1g0176041 40.084 474 248 9 192 646 114 570 3.39e-97 314
Msa1336040 MtrunA17_Chr3g0121351 39.783 460 248 10 172 615 94 540 1.65e-94 307
Msa1336040 MtrunA17_Chr1g0200181 42.163 453 239 10 204 643 115 557 3.46e-93 303
Msa1336040 MtrunA17_Chr1g0157691 40.166 483 246 11 204 667 117 575 3.88e-92 300
Msa1336040 MtrunA17_Chr5g0409981 43.401 394 212 7 224 610 94 483 1.74e-91 296
Msa1336040 MtrunA17_Chr4g0063551 40.723 415 226 6 217 613 123 535 9.95e-91 299
Msa1336040 MtrunA17_Chr7g0236841 37.190 363 219 6 230 590 6 361 1.22e-69 235
Msa1336040 MtrunA17_Chr6g0483491 36.464 362 223 5 230 590 6 361 1.57e-69 235
Msa1336040 MtrunA17_Chr7g0263771 34.975 406 251 6 215 615 110 507 1.52e-68 238
Msa1336040 MtrunA17_Chr4g0040761 37.017 362 221 6 235 594 20 376 6.65e-66 234
Msa1336040 MtrunA17_Chr3g0095031 36.512 367 220 6 225 589 88 443 1.22e-64 225
Msa1336040 MtrunA17_Chr3g0098121 36.111 396 234 7 225 605 138 529 5.15e-64 228
Msa1336040 MtrunA17_Chr2g0310581 36.512 367 219 7 234 594 53 411 1.56e-62 218
Msa1336040 MtrunA17_Chr2g0300291 36.292 383 229 7 234 605 141 519 1.37e-61 221
Msa1336040 MtrunA17_Chr5g0442191 35.556 360 226 5 232 589 79 434 2.53e-61 217
Msa1336040 MtrunA17_Chr2g0297261 33.803 355 218 6 234 583 34 376 3.30e-61 212
Msa1336040 MtrunA17_Chr2g0329931 34.530 362 230 4 233 594 40 394 4.61e-61 211
Msa1336040 MtrunA17_Chr1g0193491 38.547 358 207 7 239 589 119 470 5.97e-61 217
Msa1336040 MtrunA17_Chr7g0271121 38.375 357 207 8 240 589 111 461 8.27e-61 219
Msa1336040 MtrunA17_Chr8g0342861 34.072 361 231 4 234 594 41 394 1.08e-59 207
Msa1336040 MtrunA17_Chr4g0070981 34.930 355 222 6 234 587 41 387 1.05e-58 205
Msa1336040 MtrunA17_Chr2g0299681 33.795 361 232 4 234 594 41 394 1.11e-58 205
Msa1336040 MtrunA17_Chr6g0461751 30.310 419 275 8 201 611 109 518 1.02e-56 203
Msa1336040 MtrunA17_Chr8g0347151 36.119 371 219 11 235 590 202 569 8.35e-53 194
Msa1336040 MtrunA17_Chr6g0475251 34.819 359 208 10 248 591 117 464 2.88e-52 193
Msa1336040 MtrunA17_Chr7g0247221 31.389 360 235 7 232 590 141 489 6.59e-52 189
Msa1336040 MtrunA17_Chr8g0347161 35.135 370 224 11 235 590 103 470 8.53e-52 190
Msa1336040 MtrunA17_Chr7g0247181 31.389 360 235 7 232 590 138 486 1.14e-51 188
Msa1336040 MtrunA17_Chr7g0247191 31.111 360 236 7 232 590 148 496 4.28e-51 187
Msa1336040 MtrunA17_Chr8g0347171 34.595 370 226 12 235 590 161 528 1.46e-50 187
Msa1336040 MtrunA17_Chr1g0192021 30.216 417 242 8 233 604 25 437 2.64e-50 186
Msa1336040 MtrunA17_Chr4g0062301 34.181 354 224 6 247 594 110 460 4.35e-50 185
Msa1336040 MtrunA17_Chr8g0386451 34.225 374 230 10 235 594 289 660 1.49e-49 186
Msa1336040 MtrunA17_Chr7g0236831 32.564 433 210 14 235 592 164 589 2.68e-48 183
Msa1336040 MtrunA17_Chr3g0114081 32.609 368 227 7 244 591 26 392 5.42e-48 179
Msa1336040 MtrunA17_Chr4g0003441 31.564 358 225 10 235 584 109 454 1.15e-47 176
Msa1336040 MtrunA17_Chr6g0466611 30.585 376 244 7 234 594 142 515 2.52e-47 179
Msa1336040 MtrunA17_Chr5g0443991 37.578 322 190 8 257 571 99 416 8.43e-47 178
Msa1336040 MtrunA17_Chr2g0307471 31.680 363 240 5 233 590 90 449 1.03e-46 175
Msa1336040 MtrunA17_Chr1g0204391 32.329 365 207 10 248 582 58 412 2.99e-46 174
Msa1336040 MtrunA17_Chr4g0034411 36.137 321 195 8 257 571 99 415 4.87e-45 173
Msa1336040 MtrunA17_Chr4g0029191 29.567 416 218 13 234 575 44 458 5.11e-45 171
Msa1336040 MtrunA17_Chr2g0301281 29.087 416 220 13 234 575 41 455 7.48e-44 167
Msa1336040 MtrunA17_Chr2g0309551 28.873 426 243 8 229 598 104 525 1.27e-40 157
Msa1336040 MtrunA17_Chr1g0149251 30.503 318 207 8 272 584 2 310 3.64e-40 151
Msa1336040 MtrunA17_Chr1g0179761 29.630 378 232 12 234 584 80 450 3.62e-39 152
Msa1336040 MtrunA17_Chr5g0429221 26.573 429 285 12 233 648 2 413 5.51e-38 147
Msa1336040 MtrunA17_Chr3g0145781 26.667 390 258 8 233 595 131 519 7.04e-36 143
Msa1336040 MtrunA17_Chr4g0039471 36.683 199 118 3 234 429 223 416 1.27e-29 122
Msa1336040 MtrunA17_Chr4g0039471 31.500 200 84 4 234 428 2 153 1.94e-19 91.7
Msa1336040 MtrunA17_Chr1g0169331 25.995 377 229 8 251 588 8 373 7.36e-28 116
Msa1336040 MtrunA17_Chr8g0349951 37.013 154 92 2 233 385 9 158 9.22e-28 109
Msa1336040 MtrunA17_Chr4g0062321 31.646 237 151 6 315 547 4 233 2.37e-24 102
Msa1336040 MtrunA17_Chr5g0434301 23.604 394 221 8 271 595 70 452 7.16e-24 106
Msa1336040 MtrunA17_Chr4g0004301 23.350 394 222 8 271 595 70 452 4.64e-23 103
Msa1336040 MtrunA17_Chr8g0342851 26.023 342 200 13 263 594 2 300 4.42e-22 98.2
Msa1336040 MtrunA17_Chr4g0074521 28.753 393 226 18 243 594 91 470 8.87e-21 96.7
Msa1336040 MtrunA17_Chr3g0137891 34.503 171 100 6 272 437 2 165 2.05e-19 88.2
Msa1336040 MtrunA17_Chr2g0300871 25.150 334 219 9 252 571 39 355 4.11e-18 89.4
Msa1336040 MtrunA17_Chr4g0025131 32.370 173 109 4 224 393 46 213 1.52e-16 80.9
Msa1336040 MtrunA17_Chr3g0137901 31.034 116 79 1 469 584 32 146 1.03e-14 73.2
Msa1336040 MtrunA17_Chr4g0025141 27.273 187 122 4 413 586 15 200 1.15e-13 71.6
Msa1336040 MtrunA17_Chr4g0058601 48.000 75 38 1 543 617 9 82 2.23e-13 67.4
Msa1336040 MtrunA17_Chr1g0171481 23.380 355 252 12 269 612 175 520 5.91e-13 72.0
Msa1336040 MtrunA17_Chr0c30g0494091 32.124 193 114 7 243 423 91 278 9.77e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336040 AT2G47330.1 77.378 778 155 10 1 776 1 759 0.0 1134
Msa1336040 AT1G20920.2 44.178 584 298 11 69 642 30 595 2.59e-143 442
Msa1336040 AT5G63120.2 51.659 422 201 3 193 613 125 544 5.56e-142 431
Msa1336040 AT1G20920.4 44.685 555 285 8 69 613 368 910 8.67e-141 444
Msa1336040 AT1G20920.6 44.685 555 285 8 69 613 368 910 8.67e-141 444
Msa1336040 AT1G20920.3 44.685 555 285 8 69 613 368 910 8.67e-141 444
Msa1336040 AT1G20920.7 44.685 555 285 8 69 613 368 910 8.67e-141 444
Msa1336040 AT1G20920.5 44.685 555 285 8 69 613 368 910 8.67e-141 444
Msa1336040 AT1G20920.1 44.685 555 285 8 69 613 368 910 8.67e-141 444
Msa1336040 AT1G55150.1 49.289 422 211 3 192 612 58 477 7.28e-137 414
Msa1336040 AT1G55150.2 49.289 422 211 3 192 612 83 502 8.39e-136 412
Msa1336040 AT3G09620.1 43.920 551 262 9 69 613 239 748 4.25e-128 406
Msa1336040 AT3G09620.2 43.920 551 262 9 69 613 240 749 4.35e-128 406
Msa1336040 AT5G63120.1 51.852 351 167 2 193 542 125 474 2.35e-118 366
Msa1336040 AT5G63120.3 51.852 351 167 2 193 542 125 474 3.00e-118 365
Msa1336040 AT5G63120.4 51.852 351 167 2 193 542 125 474 3.00e-118 365
Msa1336040 AT5G63120.5 51.852 351 167 2 193 542 125 474 3.00e-118 365
Msa1336040 AT5G14610.2 42.344 418 235 5 202 617 130 543 4.23e-105 336
Msa1336040 AT5G14610.6 42.344 418 235 5 202 617 130 543 4.34e-105 336
Msa1336040 AT5G14610.5 42.344 418 235 5 202 617 138 551 7.75e-105 336
Msa1336040 AT3G06480.1 42.689 424 233 7 195 615 399 815 4.09e-104 345
Msa1336040 AT3G01540.1 42.143 420 233 7 202 617 127 540 5.07e-104 333
Msa1336040 AT3G01540.4 42.143 420 233 7 202 617 127 540 5.43e-104 333
Msa1336040 AT3G01540.2 42.143 420 233 7 202 617 127 540 5.43e-104 333
Msa1336040 AT3G01540.3 42.143 420 233 7 202 617 127 540 5.43e-104 333
Msa1336040 AT2G33730.1 41.784 426 225 6 204 609 284 706 1.65e-101 329
Msa1336040 AT2G42520.2 42.257 452 237 7 183 615 108 554 1.11e-100 324
Msa1336040 AT2G42520.1 42.257 452 237 7 183 615 108 554 1.11e-100 324
Msa1336040 AT2G42520.3 42.257 452 237 7 183 615 108 554 1.11e-100 324
Msa1336040 AT3G58510.1 41.111 450 242 8 183 615 101 544 1.09e-97 316
Msa1336040 AT3G58510.3 41.111 450 242 8 183 615 101 544 1.09e-97 316
Msa1336040 AT3G58510.2 41.111 450 242 8 183 615 101 544 1.09e-97 316
Msa1336040 AT5G14610.7 43.817 372 203 5 248 617 45 412 1.08e-96 310
Msa1336040 AT5G14610.3 43.817 372 203 5 248 617 45 412 1.08e-96 310
Msa1336040 AT5G14610.1 43.817 372 203 5 248 617 244 611 1.43e-96 316
Msa1336040 AT3G58570.1 40.000 450 249 9 183 615 96 541 5.67e-95 310
Msa1336040 AT5G51280.1 40.798 451 248 8 204 643 117 559 2.52e-92 301
Msa1336040 AT4G33370.1 38.115 488 284 8 173 650 38 517 1.96e-91 297
Msa1336040 AT1G31970.1 41.709 398 220 7 233 622 116 509 1.70e-87 286
Msa1336040 AT5G14610.4 42.693 349 195 4 202 548 138 483 2.07e-86 283
Msa1336040 AT3G06480.2 43.213 361 194 7 195 551 399 752 1.19e-85 288
Msa1336040 AT1G28180.1 44.785 326 171 5 263 584 3 323 3.65e-81 264
Msa1336040 AT3G09720.2 34.615 416 258 8 216 625 120 527 1.37e-70 241
Msa1336040 AT3G09720.1 34.615 416 258 8 216 625 120 527 1.37e-70 241
Msa1336040 AT5G60990.1 34.511 368 226 6 233 590 9 371 5.78e-66 226
Msa1336040 AT1G16280.1 36.885 366 217 7 235 594 60 417 4.89e-65 225
Msa1336040 AT1G77030.1 36.957 368 213 8 235 594 30 386 5.08e-64 230
Msa1336040 AT3G22330.1 35.556 360 226 5 232 589 103 458 2.68e-63 223
Msa1336040 AT3G13920.1 35.278 360 220 5 233 589 39 388 4.94e-62 214
Msa1336040 AT3G13920.3 35.278 360 220 5 233 589 29 378 5.54e-62 214
Msa1336040 AT3G13920.5 35.278 360 220 5 233 589 43 392 6.23e-62 214
Msa1336040 AT3G13920.2 35.278 360 220 5 233 589 39 388 6.61e-62 214
Msa1336040 AT4G16630.1 36.544 353 219 4 234 584 168 517 7.47e-62 223
Msa1336040 AT3G02065.3 31.207 439 279 9 197 623 75 502 2.94e-61 215
Msa1336040 AT3G02065.2 31.207 439 279 9 197 623 75 502 2.94e-61 215
Msa1336040 AT1G54270.1 35.278 360 220 5 233 589 39 388 3.93e-61 212
Msa1336040 AT3G22310.2 36.415 357 217 7 237 589 120 470 1.02e-60 216
Msa1336040 AT3G22310.1 36.415 357 217 7 237 589 120 470 1.36e-60 216
Msa1336040 AT3G13920.4 36.257 342 205 5 251 589 52 383 1.58e-60 210
Msa1336040 AT3G19760.1 32.213 357 229 5 230 583 32 378 2.54e-60 209
Msa1336040 AT1G54270.2 36.257 342 205 5 251 589 52 383 1.53e-59 207
Msa1336040 AT5G26742.1 38.462 351 202 7 247 589 116 460 1.63e-59 215
Msa1336040 AT5G26742.2 38.462 351 202 7 247 589 116 460 1.65e-59 215
Msa1336040 AT1G51380.1 33.148 359 223 6 230 583 19 365 1.79e-58 204
Msa1336040 AT1G72730.1 33.241 361 234 4 234 594 42 395 2.64e-58 204
Msa1336040 AT5G26742.3 39.394 330 186 7 268 589 44 367 7.43e-58 209
Msa1336040 AT4G00660.1 31.667 360 234 7 232 590 130 478 1.53e-54 196
Msa1336040 AT4G00660.2 31.667 360 234 7 232 590 130 478 1.53e-54 196
Msa1336040 AT5G65900.1 34.254 362 231 6 233 590 154 512 1.16e-52 194
Msa1336040 AT3G18600.1 33.889 360 232 5 234 590 90 446 2.49e-52 192
Msa1336040 AT5G62190.1 36.103 349 199 9 248 582 111 449 4.81e-50 187
Msa1336040 AT5G08610.1 33.693 371 228 11 235 590 384 751 9.28e-50 188
Msa1336040 AT2G45810.1 30.362 359 240 7 232 590 153 501 1.45e-49 183
Msa1336040 AT3G61240.2 29.526 359 243 6 232 590 123 471 1.72e-49 182
Msa1336040 AT3G61240.1 29.526 359 243 6 232 590 123 471 1.72e-49 182
Msa1336040 AT5G63630.2 33.155 374 234 8 235 594 250 621 4.71e-49 185
Msa1336040 AT5G63630.1 33.155 374 234 8 235 594 56 427 1.02e-48 180
Msa1336040 AT3G02065.1 30.108 372 242 7 262 623 2 365 7.61e-48 174
Msa1336040 AT3G53110.1 31.507 365 229 8 235 583 93 452 1.62e-47 176
Msa1336040 AT5G11170.1 31.268 355 228 9 235 583 48 392 2.73e-47 174
Msa1336040 AT5G11200.1 31.268 355 228 9 235 583 48 392 2.73e-47 174
Msa1336040 AT4G34910.1 33.248 391 204 8 233 572 46 430 3.24e-47 178
Msa1336040 AT4G09730.1 32.105 380 231 10 235 594 114 486 3.93e-46 175
Msa1336040 AT1G63250.1 32.540 378 238 9 232 594 327 702 8.00e-46 176
Msa1336040 AT5G08620.1 33.243 370 231 10 235 590 82 449 1.10e-45 172
Msa1336040 AT2G07750.1 32.540 378 238 9 232 594 374 749 1.13e-45 176
Msa1336040 AT5G54910.1 36.364 330 200 8 248 571 86 411 2.46e-44 171
Msa1336040 AT2G40700.1 30.159 441 222 15 234 594 31 465 1.13e-43 167
Msa1336040 AT1G71370.1 33.241 361 222 7 244 591 27 381 2.09e-43 166
Msa1336040 AT5G05450.1 33.151 365 221 9 244 588 27 388 2.39e-43 166
Msa1336040 AT5G11200.3 28.499 393 230 10 235 583 48 433 1.46e-42 161
Msa1336040 AT1G12770.2 28.856 402 230 8 232 579 109 508 6.87e-42 161
Msa1336040 AT1G12770.1 28.856 402 230 8 232 579 109 508 6.87e-42 161
Msa1336040 AT3G16840.1 30.807 409 215 11 242 583 199 606 3.81e-41 162
Msa1336040 AT3G16840.2 30.900 411 212 12 242 583 200 607 4.07e-41 162
Msa1336040 AT5G11200.2 27.737 411 228 12 235 583 48 451 1.19e-39 154
Msa1336040 AT5G11170.2 31.447 318 202 9 272 583 2 309 7.16e-39 148
Msa1336040 AT3G06980.1 27.229 415 269 10 210 595 351 761 9.00e-38 151
Msa1336040 AT1G71280.2 33.225 307 173 7 244 544 28 308 8.26e-35 136
Msa1336040 AT1G71280.1 32.704 318 182 7 244 555 28 319 2.23e-34 137
Msa1336040 AT1G51380.2 31.855 248 156 4 230 475 19 255 1.09e-30 122
Msa1336040 AT1G28180.2 49.138 116 56 1 263 375 3 118 2.48e-29 113
Msa1336040 AT1G51380.4 33.645 214 133 3 230 441 19 225 2.60e-29 119
Msa1336040 AT1G51380.3 33.645 214 133 3 230 441 19 225 4.58e-29 118
Msa1336040 AT4G15850.1 27.062 388 214 10 271 595 73 454 8.34e-26 112
Msa1336040 AT5G19210.2 28.218 404 227 16 239 597 81 466 5.67e-24 106
Msa1336040 AT1G59990.2 26.383 235 139 8 234 450 81 299 8.02e-17 85.1
Msa1336040 AT1G59990.1 26.383 235 139 8 234 450 81 299 1.05e-16 84.7
Msa1336040 AT2G28600.1 26.235 324 209 12 306 616 196 502 5.99e-15 79.0

Find 212 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTACCGGTTGTGCTTTC+TGG 0.101108 tig0000790:-13915 Msa1336040:CDS
TTGAGGGCGAAGAAGGATTT+AGG 0.143289 tig0000790:-14804 Msa1336040:CDS
TATTACTGAATCCTTCATTT+TGG 0.152380 tig0000790:+11467 None:intergenic
CAACGAAGCTACTCCTAAAT+TGG 0.189044 tig0000790:+11506 None:intergenic
TGAGAAATTGCCGTGGCTTC+TGG 0.210686 tig0000790:-13316 Msa1336040:CDS
CGAGTTTCTGGTTAAATTAA+AGG 0.217247 tig0000790:+15406 None:intergenic
ACCGCGTATGGTCGAGTTTC+TGG 0.230165 tig0000790:+15394 None:intergenic
TGAGGGAGATAATGGAATTT+AGG 0.250084 tig0000790:+15282 None:intergenic
AGTTTGGCTATTCGGGTATC+AGG 0.250256 tig0000790:-14050 Msa1336040:CDS
CTTTGATATTGCTAAAGATA+TGG 0.286650 tig0000790:-13046 Msa1336040:CDS
CAGGAATGATGTCCCAATTT+AGG 0.287222 tig0000790:-11519 Msa1336040:CDS
ATAAAATTTGAGGGAGATAA+TGG 0.287590 tig0000790:+15274 None:intergenic
ATATGCTTTAGCAAATTTCT+TGG 0.299619 tig0000790:+13725 None:intergenic
TGGGTTTGCTCCACAAATTA+TGG 0.309744 tig0000790:-13988 Msa1336040:CDS
CCTTCCTCCTTCTGAAGTTC+AGG 0.311889 tig0000790:+13807 None:intergenic
TTCCGCAGGACGGGAGATTC+AGG 0.312404 tig0000790:-11888 Msa1336040:intron
GTTGTTTGATTGTTCTTCTC+TGG 0.315342 tig0000790:+15004 None:intergenic
TAGATATAAAGATGATTTAG+AGG 0.320038 tig0000790:-14847 Msa1336040:CDS
ATAGGAAGAGTTTGGCTATT+CGG 0.322771 tig0000790:-14058 Msa1336040:CDS
TCCACTTTCTCCTTCGGCTT+CGG 0.327604 tig0000790:+14873 None:intergenic
ATCACCTTGATCAATCATTT+CGG 0.328986 tig0000790:+13284 None:intergenic
TATACAATGCCAAGCTTTAC+CGG 0.334510 tig0000790:-13928 Msa1336040:CDS
AATTCCACTAGTCAAAATTC+TGG 0.335286 tig0000790:-11322 Msa1336040:CDS
TAGGAAGAGTTTGGCTATTC+GGG 0.336769 tig0000790:-14057 Msa1336040:CDS
ACACTAGCTGGCTTTGTATC+TGG 0.337129 tig0000790:-11415 Msa1336040:CDS
GGTGAAGTCTTGATTTGATT+TGG 0.344841 tig0000790:-11072 Msa1336040:three_prime_UTR
TCACCTTGATCAATCATTTC+GGG 0.344876 tig0000790:+13285 None:intergenic
AAGAAATTTGCTAAAGCATA+TGG 0.357035 tig0000790:-13723 Msa1336040:CDS
CTATCTTCCACTTTCTCCTT+CGG 0.357308 tig0000790:+14867 None:intergenic
TGAGGGCGAAGAAGGATTTA+GGG 0.361115 tig0000790:-14803 Msa1336040:CDS
CGATCCATTAGATGCATTCA+TGG 0.362487 tig0000790:-14931 Msa1336040:CDS
CCTTCCATGAATGCATCTAA+TGG 0.370763 tig0000790:+14927 None:intergenic
GAGGAGTCACCTTCAATATC+AGG 0.374150 tig0000790:-14579 Msa1336040:intron
AGCACGGTTTGCTGGTGAAT+TGG 0.382223 tig0000790:-12941 Msa1336040:CDS
GGTGTGCGCGGAGTGGATTT+TGG 0.383444 tig0000790:-11628 Msa1336040:CDS
TTCTTCTTGTCAAGAACAAT+AGG 0.387443 tig0000790:+14669 None:intergenic
ATACGTGTCTCTGCTGTCTA+TGG 0.389174 tig0000790:-13699 Msa1336040:CDS
TTTATAGCACCCATAATTTG+TGG 0.390337 tig0000790:+13978 None:intergenic
AGCATGTCTATCAATCTTCC+AGG 0.392561 tig0000790:+13612 None:intergenic
ATTGTATTGAGTACTGAAAA+AGG 0.392866 tig0000790:-10995 Msa1336040:three_prime_UTR
AGCAAGATGTAACTGATTAT+AGG 0.393214 tig0000790:-14076 Msa1336040:CDS
CTAGTGGAATTTACAGTTGA+AGG 0.393513 tig0000790:+11334 None:intergenic
ATCGTGTGCAAGCTCAAGTT+AGG 0.394769 tig0000790:-15249 Msa1336040:five_prime_UTR
AAGAGCAAGGTTTGGCGGTC+CGG 0.397692 tig0000790:+13474 None:intergenic
GCATCATCTAACGCAGTTCC+AGG 0.398257 tig0000790:-11571 Msa1336040:CDS
GGCATAGCGAAAACTGGTTC+TGG 0.399093 tig0000790:-13879 Msa1336040:CDS
GCTTCGAAATTTCACTAAGA+AGG 0.405131 tig0000790:+15219 None:intergenic
GAATGTGTCCACGGAGTTGA+TGG 0.406543 tig0000790:-12893 Msa1336040:CDS
CTGGTTAAATTAAAGGATGA+AGG 0.407853 tig0000790:+15413 None:intergenic
GGATGAAATTGAAGCACAAT+TGG 0.408212 tig0000790:-13229 Msa1336040:CDS
GCTGATCGAATGTTTGATCT+TGG 0.409409 tig0000790:-13537 Msa1336040:CDS
ATCATTGGCATAGCGAAAAC+TGG 0.412683 tig0000790:-13885 Msa1336040:CDS
AAGTTCGGATTCGAAGGTTT+CGG 0.413016 tig0000790:-15161 Msa1336040:CDS
TCTCCCACTGTCACTCTGAT+AGG 0.413022 tig0000790:+13396 None:intergenic
GGGTTTGCTCCACAAATTAT+GGG 0.419490 tig0000790:-13987 Msa1336040:CDS
GATGGCCTTCGCCTTTCTCT+AGG 0.422928 tig0000790:+11170 None:intergenic
AACTGATTATAGGAAGAGTT+TGG 0.423334 tig0000790:-14066 Msa1336040:CDS
CAGAAGGAGGAAGGTCCTAT+AGG 0.424404 tig0000790:-13798 Msa1336040:CDS
AGAAAAGGCAAAGGCAGAGG+TGG 0.426446 tig0000790:-11667 Msa1336040:CDS
GTTCATCGCATTGGAAGAAC+AGG 0.434588 tig0000790:-13015 Msa1336040:CDS
TTTGTATCTGGTGGATCAAT+TGG 0.445406 tig0000790:-11403 Msa1336040:CDS
TCCTATGATCGTGCATATCA+TGG 0.445806 tig0000790:-13835 Msa1336040:CDS
AAATGTTTGAGCCTTGGCTC+TGG 0.447230 tig0000790:+10950 None:intergenic
ATGAAGGTGAAGGCGAGTAT+AGG 0.448263 tig0000790:+15429 None:intergenic
GCTGTAAATTCTCTGCGAAC+AGG 0.449877 tig0000790:-11538 Msa1336040:CDS
TTGCAGAAAAGAGCAAGGTT+TGG 0.450948 tig0000790:+13466 None:intergenic
GTATGATCAAGAGGAGCAAT+AGG 0.454941 tig0000790:+14639 None:intergenic
GCTGCTAAAGCCGTGGATGC+TGG 0.457028 tig0000790:-14720 Msa1336040:CDS
TCCATGATATGCACGATCAT+AGG 0.458040 tig0000790:+13834 None:intergenic
GTTAATAGCTTAGTTGCTGC+TGG 0.458763 tig0000790:-12919 Msa1336040:CDS
TATCTGATGTGCCAATTCTC+TGG 0.460585 tig0000790:+13758 None:intergenic
TTCTCCTTCGGCTTCGGTGG+CGG 0.461021 tig0000790:+14879 None:intergenic
GAGAGAAAATGTTTGAGCCT+TGG 0.462374 tig0000790:+10944 None:intergenic
ATGTGCACCTACCAGAGAAT+TGG 0.464889 tig0000790:-13769 Msa1336040:CDS
AGAGAAAGGCGAAGGCCATC+AGG 0.465859 tig0000790:-11167 Msa1336040:CDS
CTGGTCAGAACAACACGAAC+AGG 0.473022 tig0000790:-11291 Msa1336040:intron
AACGAAGCTACTCCTAAATT+GGG 0.473246 tig0000790:+11507 None:intergenic
GTTAAATTACCTGATATTGA+AGG 0.475683 tig0000790:+14570 None:intergenic
GGTGCACATATCACTCCTAT+AGG 0.477608 tig0000790:+13783 None:intergenic
CACACGATAAATAAAATTTG+AGG 0.479547 tig0000790:+15264 None:intergenic
CTGTTCGTGTTGTTCTGACC+AGG 0.479959 tig0000790:+11292 None:intergenic
AAGGCGAAGGCCATCAGGTT+GGG 0.481451 tig0000790:-11162 Msa1336040:CDS
TGCTGCCCTGCATGGTGATA+AGG 0.489958 tig0000790:-13187 Msa1336040:CDS
ATTGGAAGAACAGGCCGTGC+TGG 0.490716 tig0000790:-13006 Msa1336040:CDS
GAGATGTCGAAGAGAAAGTT+CGG 0.490965 tig0000790:-15176 Msa1336040:CDS
GGGAGAAAAGGCAAAGGCAG+AGG 0.492204 tig0000790:-11670 Msa1336040:CDS
CAAAATTCTGGAGTAAATCC+TGG 0.496585 tig0000790:-11310 Msa1336040:CDS
ACACGATAAATAAAATTTGA+GGG 0.499452 tig0000790:+15265 None:intergenic
TTGGATTTGAGCCGCAAGTA+AGG 0.501136 tig0000790:-13518 Msa1336040:CDS
GTTGATGGATCTTGCTATGA+AGG 0.502001 tig0000790:-12878 Msa1336040:intron
AATAAGAGACCAACACTAGC+TGG 0.504667 tig0000790:-11427 Msa1336040:CDS
GTATCTGGTGGATCAATTGG+CGG 0.505944 tig0000790:-11400 Msa1336040:CDS
CTCTTCACAACCACCACCAC+CGG 0.506306 tig0000790:+14962 None:intergenic
TTGAGATCGTTCGAAACTAT+AGG 0.506823 tig0000790:+15121 None:intergenic
GAATTTACAGTTGAAGGAGC+AGG 0.508575 tig0000790:+11340 None:intergenic
TCTCTACCAGAAAGCACAAC+CGG 0.508638 tig0000790:+13909 None:intergenic
AAAGGCAAAGGCAGAGGTGG+GGG 0.509419 tig0000790:-11664 Msa1336040:CDS
TTTAGGGTTGACGTTGGCGT+CGG 0.513585 tig0000790:-14787 Msa1336040:CDS
GCGTCGGATGCGTTGCATGC+TGG 0.516063 tig0000790:-14771 Msa1336040:CDS
GAGATAGTTGTTGCTACGCC+TGG 0.517266 tig0000790:-13630 Msa1336040:CDS
CTTTCTGGTAGAGATATCAT+TGG 0.519087 tig0000790:-13900 Msa1336040:CDS
CATCGTACTCGATGTTATCA+AGG 0.519589 tig0000790:+15033 None:intergenic
GAAAAGGCAAAGGCAGAGGT+GGG 0.521254 tig0000790:-11666 Msa1336040:CDS
GACAGTGGGAGAGGTGGGGA+TGG 0.524042 tig0000790:-13385 Msa1336040:CDS
GGGTTTGAAGTTCCTAAGCC+AGG 0.524991 tig0000790:-14029 Msa1336040:CDS
AACGATGATAACGCCGGTGG+TGG 0.525263 tig0000790:-14975 Msa1336040:CDS
GACATGCATGTTCATCGCAT+TGG 0.527240 tig0000790:-13024 Msa1336040:CDS
AATACACGAGGAGATGAAAT+CGG 0.527640 tig0000790:-14904 Msa1336040:CDS
GTATGAATGCTCATATTTGT+AGG 0.528399 tig0000790:-11093 Msa1336040:three_prime_UTR
GCAAAGTCGAAAAGTTAGCC+AGG 0.529230 tig0000790:-13434 Msa1336040:CDS
TCAAAACGAGATGCAAGAAA+AGG 0.529472 tig0000790:-11865 Msa1336040:CDS
ATTGATCCTTATCACCATGC+AGG 0.531053 tig0000790:+13181 None:intergenic
TTTGGAGCTATGGGTAGTAG+TGG 0.533197 tig0000790:+15341 None:intergenic
TATCAGAGTGACAGTGGGAG+AGG 0.534863 tig0000790:-13394 Msa1336040:CDS
TAAGGATCAATCTTCTCGTA+TGG 0.538960 tig0000790:-13169 Msa1336040:CDS
CAGAAAAGAGCAAGGTTTGG+CGG 0.539484 tig0000790:+13469 None:intergenic
CGAAACTATAGGTAGATTGA+CGG 0.541969 tig0000790:+15132 None:intergenic
AGAGTGACAGTGGGAGAGGT+GGG 0.542580 tig0000790:-13390 Msa1336040:CDS
AAAGCACAACCGGTAAAGCT+TGG 0.543465 tig0000790:+13919 None:intergenic
GATGAAATTGAAGCACAATT+GGG 0.543605 tig0000790:-13228 Msa1336040:CDS
AAGAGAAAGTTCGGATTCGA+AGG 0.543644 tig0000790:-15167 Msa1336040:CDS
TGGGGTCGTACTCATGATAG+AGG 0.543749 tig0000790:+10915 None:intergenic
TCATCAACCTCCCAAAATGA+AGG 0.545123 tig0000790:-11478 Msa1336040:CDS
ACTTTCTCCTTCGGCTTCGG+TGG 0.546367 tig0000790:+14876 None:intergenic
ACCGAAGCCGAAGGAGAAAG+TGG 0.547284 tig0000790:-14874 Msa1336040:CDS
ATCAATCAAACCAGCATCCA+CGG 0.550510 tig0000790:+14710 None:intergenic
TCGTGTGCAAGCTCAAGTTA+GGG 0.551061 tig0000790:-15248 Msa1336040:five_prime_UTR
TTACCCGAAATGATTGATCA+AGG 0.552029 tig0000790:-13288 Msa1336040:CDS
GATGATAACGCCGGTGGTGG+TGG 0.552916 tig0000790:-14972 Msa1336040:CDS
CGTTGTCTTCGAAATTGTCG+TGG 0.555230 tig0000790:+15057 None:intergenic
CACTGTCACTCTGATAGGAT+CGG 0.557327 tig0000790:+13401 None:intergenic
AATGCTCAGAGCAACTTACC+TGG 0.557941 tig0000790:-13571 Msa1336040:CDS
GCTACTGATGTTGCCGCTCG+TGG 0.558152 tig0000790:-13102 Msa1336040:CDS
AAAGGCGAAGGCCATCAGGT+TGG 0.560748 tig0000790:-11163 Msa1336040:CDS
CAGAGTGACAGTGGGAGAGG+TGG 0.564403 tig0000790:-13391 Msa1336040:CDS
AACAGGCCGTGCTGGTGACA+AGG 0.564433 tig0000790:-12998 Msa1336040:CDS
AAAAGGCAAAGGCAGAGGTG+GGG 0.567265 tig0000790:-11665 Msa1336040:CDS
GTTGTTGTTCCCACCGCGTA+TGG 0.569328 tig0000790:+15382 None:intergenic
TGGCAAAGGTGTGCGCGGAG+TGG 0.570105 tig0000790:-11635 Msa1336040:CDS
CATTGTTGCAGAAAAGAGCA+AGG 0.570141 tig0000790:+13461 None:intergenic
TGATGTGCCAATTCTCTGGT+AGG 0.570886 tig0000790:+13762 None:intergenic
TCAATCTCAGTATGATCAAG+AGG 0.572016 tig0000790:+14630 None:intergenic
TATTATCAATTGATAGAGCA+TGG 0.572994 tig0000790:-11045 Msa1336040:three_prime_UTR
CGTGTCTCTGCTGTCTATGG+TGG 0.576322 tig0000790:-13696 Msa1336040:CDS
TTTAAAGTTGCTGCCCTGCA+TGG 0.578481 tig0000790:-13195 Msa1336040:CDS
GGTAATTTCTCCAGAAGCCA+CGG 0.578486 tig0000790:+13306 None:intergenic
GGTCCATCGTTGGTCAGATT+AGG 0.580274 tig0000790:-13497 Msa1336040:CDS
CCATTAGATGCATTCATGGA+AGG 0.582173 tig0000790:-14927 Msa1336040:CDS
GTTTGGCTATTCGGGTATCA+GGG 0.582805 tig0000790:-14049 Msa1336040:CDS
GGATCAGCCTGAACTTCAGA+AGG 0.585907 tig0000790:-13814 Msa1336040:CDS
TGATTTAGAGGATGATCCAA+TGG 0.586529 tig0000790:-14835 Msa1336040:CDS
GGCGCCGCCACCGAAGCCGA+AGG 0.588262 tig0000790:-14883 Msa1336040:CDS
AACTTACCTGGTGCTTGATG+AGG 0.590884 tig0000790:-13559 Msa1336040:CDS
TGTTGTGTAGGTGGGAGAAA+AGG 0.593082 tig0000790:-11682 Msa1336040:intron
CAGTTCAAAGAACTCAAGGC+AGG 0.593420 tig0000790:-13657 Msa1336040:CDS
GCAGGTGGCAAAGGTGTGCG+CGG 0.596293 tig0000790:-11640 Msa1336040:CDS
CATCGTTGGTCAGATTAGGC+CGG 0.596590 tig0000790:-13493 Msa1336040:CDS
CGGTGGTGGTGGTTGTGAAG+AGG 0.599336 tig0000790:-14961 Msa1336040:CDS
ACCAGAAACTCGACCATACG+CGG 0.600091 tig0000790:-15395 Msa1336040:five_prime_UTR
AGGATCGGAAAGGATTTCCC+TGG 0.600410 tig0000790:+13416 None:intergenic
TTTACAGCAGCAGACCGACC+TGG 0.602830 tig0000790:+11553 None:intergenic
GCAGTTCTAAACCTAGAGAA+AGG 0.605177 tig0000790:-11181 Msa1336040:intron
GTCGTACTCATGATAGAGGT+AGG 0.605754 tig0000790:+10919 None:intergenic
ATTCAGTAATAATACAAGCA+TGG 0.605916 tig0000790:-11455 Msa1336040:CDS
GGCCGTGCTGGTGACAAGGA+CGG 0.606801 tig0000790:-12994 Msa1336040:CDS
CTAGCTGGCTTTGTATCTGG+TGG 0.609199 tig0000790:-11412 Msa1336040:CDS
AGCAATATCAAAGTTTACCA+CGG 0.609796 tig0000790:+13056 None:intergenic
GATCAGCCTCATCAAGCACC+AGG 0.611022 tig0000790:+13553 None:intergenic
GGCAATTTCTCAGAATCAGA+AGG 0.613201 tig0000790:+13327 None:intergenic
AGTAGCAATAAGCACATGGT+AGG 0.613217 tig0000790:+13119 None:intergenic
CCTGAACTTCAGAAGGAGGA+AGG 0.614956 tig0000790:-13807 Msa1336040:CDS
TTGATCCTTATCACCATGCA+GGG 0.615126 tig0000790:+13182 None:intergenic
TGAACAGTTCAAAGAACTCA+AGG 0.617345 tig0000790:-13661 Msa1336040:CDS
CTGATTCTGAGAAATTGCCG+TGG 0.618831 tig0000790:-13323 Msa1336040:CDS
AACTATCTATCCCAACCTGA+TGG 0.619017 tig0000790:+11152 None:intergenic
CGATCCTATCAGAGTGACAG+TGG 0.622612 tig0000790:-13400 Msa1336040:CDS
GAAGGATTTAGGGTTGACGT+TGG 0.628406 tig0000790:-14793 Msa1336040:CDS
CGGCCTAATCTGACCAACGA+TGG 0.632293 tig0000790:+13494 None:intergenic
CATCTAACGCAGTTCCAGGT+CGG 0.632676 tig0000790:-11567 Msa1336040:CDS
CATCAGTAGCAATAAGCACA+TGG 0.632724 tig0000790:+13115 None:intergenic
CTTGATGTCAAGACCACGAG+CGG 0.633460 tig0000790:+13089 None:intergenic
GGAGGAACGTAAAGACGTTG+AGG 0.634079 tig0000790:+15095 None:intergenic
TTATGCTGCTGCTAAAGCCG+TGG 0.635330 tig0000790:-14727 Msa1336040:CDS
CTCCGTCCTTGTCACCAGCA+CGG 0.638268 tig0000790:+12992 None:intergenic
AAACGAGATGCAAGAAAAGG+AGG 0.638810 tig0000790:-11862 Msa1336040:intron
CAAAGTCGAAAAGTTAGCCA+GGG 0.638925 tig0000790:-13433 Msa1336040:CDS
GTATAGATATTCCAGAGCCA+AGG 0.641050 tig0000790:-10961 Msa1336040:three_prime_UTR
GATACAAAGCCAGCTAGTGT+TGG 0.641121 tig0000790:+11418 None:intergenic
AAATTAAAGGATGAAGGTGA+AGG 0.641369 tig0000790:+15419 None:intergenic
TGCTGGTCAGAATGTGTCCA+CGG 0.644595 tig0000790:-12902 Msa1336040:CDS
TCAGCCTGAACTTCAGAAGG+AGG 0.650481 tig0000790:-13811 Msa1336040:CDS
TCACTCTGATAGGATCGGAA+AGG 0.651428 tig0000790:+13406 None:intergenic
CTAAACCTAGAGAAAGGCGA+AGG 0.655176 tig0000790:-11175 Msa1336040:CDS
TGGATATGATTCTGATGAGG+AGG 0.658341 tig0000790:-14751 Msa1336040:CDS
TGCTTCAATTTCATCCACAG+TGG 0.658468 tig0000790:+13236 None:intergenic
CCGCAAGTAAGGTCCATCGT+TGG 0.658844 tig0000790:-13507 Msa1336040:CDS
CATCAAGTCAATTAAAACCG+TGG 0.659638 tig0000790:-13073 Msa1336040:CDS
GGCACATCAGATATATCTCG+AGG 0.663704 tig0000790:-13748 Msa1336040:CDS
GCTTGGCATTGTATAGACGT+CGG 0.665885 tig0000790:+13936 None:intergenic
GAGTGACAGTGGGAGAGGTG+GGG 0.667890 tig0000790:-13389 Msa1336040:CDS
ATGGGTGCTATAAAGAAACA+AGG 0.668755 tig0000790:-13969 Msa1336040:CDS
AGCAAGATCCATCAACTCCG+TGG 0.674249 tig0000790:+12885 None:intergenic
CATACACTTGAGTTTGACAG+CGG 0.680583 tig0000790:+11111 None:intergenic
GATCCTATCAGAGTGACAGT+GGG 0.686740 tig0000790:-13399 Msa1336040:CDS
GAAGCACAATTGGGTCAGAG+AGG 0.693962 tig0000790:-13219 Msa1336040:CDS
GGAACGTAAAGACGTTGAGG+AGG 0.696141 tig0000790:+15098 None:intergenic
AACAACAACGATGATAACGC+CGG 0.697728 tig0000790:-14981 Msa1336040:CDS
TGCTGGATATGATTCTGATG+AGG 0.699809 tig0000790:-14754 Msa1336040:CDS
CCAACGATGGACCTTACTTG+CGG 0.706917 tig0000790:+13507 None:intergenic
AACAACGATGATAACGCCGG+TGG 0.714203 tig0000790:-14978 Msa1336040:CDS
GTAGGTGGGAGAAAAGGCAA+AGG 0.721472 tig0000790:-11676 Msa1336040:intron
ATTCATGGAAGGAATACACG+AGG 0.768621 tig0000790:-14916 Msa1336040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATTAATGTATTCAA+TGG - tig0000790:13705-13724 Msa1336040:CDS 10.0%
!! AACATAAAAATAGAATTTCA+TGG + tig0000790:11814-11833 None:intergenic 15.0%
!!! ATTTTACAGAAATTTAAATC+TGG - tig0000790:13210-13229 Msa1336040:CDS 15.0%
!!! TTAGTACATATTTTTTGAAA+TGG - tig0000790:13682-13701 Msa1336040:CDS 15.0%
!! TAAAGAAGTAAAGATTATTA+GGG + tig0000790:14211-14230 None:intergenic 15.0%
!!! AAAAAGAAGGGTTTTAATTT+TGG + tig0000790:11034-11053 None:intergenic 20.0%
!! TTGAGTTTGAATAAAAAGAA+GGG + tig0000790:11046-11065 None:intergenic 20.0%
!! ACACGATAAATAAAATTTGA+GGG + tig0000790:11092-11111 None:intergenic 20.0%
!! TAGATATAAAGATGATTTAG+AGG - tig0000790:11507-11526 Msa1336040:CDS 20.0%
!! TCATAAAAATCCTTGTTAAA+AGG + tig0000790:11757-11776 None:intergenic 20.0%
!!! TTTTAACAAGGATTTTTATG+AGG - tig0000790:11756-11775 Msa1336040:intron 20.0%
!!! TTAAGTTGATTATTCAAACA+GGG + tig0000790:11926-11945 None:intergenic 20.0%
!!! ATTAAGTTGATTATTCAAAC+AGG + tig0000790:11927-11946 None:intergenic 20.0%
!! TGAAGAAAAAATACTGTATA+GGG + tig0000790:13510-13529 None:intergenic 20.0%
!! ATGAAGAAAAAATACTGTAT+AGG + tig0000790:13511-13530 None:intergenic 20.0%
!! TATATTAATGTATTCAATGG+TGG - tig0000790:13708-13727 Msa1336040:CDS 20.0%
!! GATAGAAGTTATATATCTAT+AGG - tig0000790:13773-13792 Msa1336040:CDS 20.0%
!!! ATCTATTTGATTGAACATTT+TGG - tig0000790:13956-13975 Msa1336040:CDS 20.0%
!!! TGAACATTTTGGTAAAATTA+TGG - tig0000790:13967-13986 Msa1336040:CDS 20.0%
!! CTAAAGAAGTAAAGATTATT+AGG + tig0000790:14212-14231 None:intergenic 20.0%
!! TATAAGATTTAGATATCTCT+TGG - tig0000790:14408-14427 Msa1336040:intron 20.0%
!! ATAAGATTTAGATATCTCTT+GGG - tig0000790:14409-14428 Msa1336040:intron 20.0%
! GTTGAGTTTGAATAAAAAGA+AGG + tig0000790:11047-11066 None:intergenic 25.0%
! ATAAAATTTGAGGGAGATAA+TGG + tig0000790:11083-11102 None:intergenic 25.0%
! CACACGATAAATAAAATTTG+AGG + tig0000790:11093-11112 None:intergenic 25.0%
! GTTAAATTACCTGATATTGA+AGG + tig0000790:11787-11806 None:intergenic 25.0%
!!! TAAGTTGATTATTCAAACAG+GGG + tig0000790:11925-11944 None:intergenic 25.0%
! ATATGCTTTAGCAAATTTCT+TGG + tig0000790:12632-12651 None:intergenic 25.0%
!!! AAGAAATTTGCTAAAGCATA+TGG - tig0000790:12631-12650 Msa1336040:intron 25.0%
!!! ATTAGTTTTTGCTTCCAAAA+AGG - tig0000790:13095-13114 Msa1336040:CDS 25.0%
! CTTTGATATTGCTAAAGATA+TGG - tig0000790:13308-13327 Msa1336040:CDS 25.0%
! TTATAACTCAAAAAGAAGCA+CGG - tig0000790:13397-13416 Msa1336040:CDS 25.0%
! CAAAACCAACAATAATCAAA+GGG + tig0000790:13585-13604 None:intergenic 25.0%
!!! GCTTTTTTCAAAAGATGAAA+TGG - tig0000790:13854-13873 Msa1336040:CDS 25.0%
! TTGGTAAAATTATGGTAGAA+TGG - tig0000790:13975-13994 Msa1336040:CDS 25.0%
!!! TAGAATGGACTTGTTTTTTA+GGG - tig0000790:13990-14009 Msa1336040:CDS 25.0%
!! TCTAAAATATATTTGACTGC+TGG - tig0000790:14013-14032 Msa1336040:CDS 25.0%
! CTAAAATATATTTGACTGCT+GGG - tig0000790:14014-14033 Msa1336040:CDS 25.0%
! GTTTGGATGAGAATAAAATT+AGG - tig0000790:14057-14076 Msa1336040:CDS 25.0%
!! GGTCGAACTAATATATTTTT+CGG + tig0000790:14241-14260 None:intergenic 25.0%
! TATAGTCATAACAAGTCAAA+TGG + tig0000790:14262-14281 None:intergenic 25.0%
!! ATTACTGAATCCTTCATTTT+GGG + tig0000790:14889-14908 None:intergenic 25.0%
!! TATTACTGAATCCTTCATTT+TGG + tig0000790:14890-14909 None:intergenic 25.0%
! ATTCAGTAATAATACAAGCA+TGG - tig0000790:14899-14918 Msa1336040:CDS 25.0%
! TATTATCAATTGATAGAGCA+TGG - tig0000790:15309-15328 Msa1336040:five_prime_UTR 25.0%
!!! ATTGTATTGAGTACTGAAAA+AGG - tig0000790:15359-15378 Msa1336040:five_prime_UTR 25.0%
AAATTAAAGGATGAAGGTGA+AGG + tig0000790:10938-10957 None:intergenic 30.0%
CTGGTTAAATTAAAGGATGA+AGG + tig0000790:10944-10963 None:intergenic 30.0%
!! CGAGTTTCTGGTTAAATTAA+AGG + tig0000790:10951-10970 None:intergenic 30.0%
!!! GGTTTTAATTTTGGAGCTAT+GGG + tig0000790:11025-11044 None:intergenic 30.0%
TTCTTCTTGTCAAGAACAAT+AGG + tig0000790:11688-11707 None:intergenic 30.0%
! TGATTATGAGCCTTTTAACA+AGG - tig0000790:11744-11763 Msa1336040:intron 30.0%
! TGTGTGTTGATATTTCACAT+GGG - tig0000790:11883-11902 Msa1336040:CDS 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - tig0000790:12053-12072 Msa1336040:intron 30.0%
!! ATGTGGACATTAGTTGTTTT+CGG + tig0000790:12097-12116 None:intergenic 30.0%
TATTGAAAGAGCTAATGATG+TGG + tig0000790:12114-12133 None:intergenic 30.0%
AGCAAGATGTAACTGATTAT+AGG - tig0000790:12278-12297 Msa1336040:intron 30.0%
AACTGATTATAGGAAGAGTT+TGG - tig0000790:12288-12307 Msa1336040:intron 30.0%
TTTATAGCACCCATAATTTG+TGG + tig0000790:12379-12398 None:intergenic 30.0%
GATAGACATGCTAAAAATGA+AGG - tig0000790:12753-12772 Msa1336040:intron 30.0%
ATCACCTTGATCAATCATTT+CGG + tig0000790:13073-13092 None:intergenic 30.0%
GATGAAATTGAAGCACAATT+GGG - tig0000790:13126-13145 Msa1336040:CDS 30.0%
AGCAATATCAAAGTTTACCA+CGG + tig0000790:13301-13320 None:intergenic 30.0%
CCAAAACCAACAATAATCAA+AGG + tig0000790:13586-13605 None:intergenic 30.0%
!!! CCTTTGATTATTGTTGGTTT+TGG - tig0000790:13583-13602 Msa1336040:CDS 30.0%
! TTTTGCCTGTAAATAGCATA+GGG + tig0000790:13649-13668 None:intergenic 30.0%
! TTTTTGCCTGTAAATAGCAT+AGG + tig0000790:13650-13669 None:intergenic 30.0%
ATATCTATAGGTTTGACTGT+TGG - tig0000790:13785-13804 Msa1336040:CDS 30.0%
!!! GTAGAATGGACTTGTTTTTT+AGG - tig0000790:13989-14008 Msa1336040:CDS 30.0%
AAGTAAAGATTATTAGGGAG+AGG + tig0000790:14206-14225 None:intergenic 30.0%
GTAATATCAGTATGCTTGAT+TGG - tig0000790:14624-14643 Msa1336040:CDS 30.0%
TTACATTTCTTGTGTTGTGT+AGG - tig0000790:14660-14679 Msa1336040:CDS 30.0%
AATTCCACTAGTCAAAATTC+TGG - tig0000790:15032-15051 Msa1336040:CDS 30.0%
GTATGAATGCTCATATTTGT+AGG - tig0000790:15261-15280 Msa1336040:five_prime_UTR 30.0%
!!! GGGTTTTAATTTTGGAGCTA+TGG + tig0000790:11026-11045 None:intergenic 35.0%
!! TGAGGGAGATAATGGAATTT+AGG + tig0000790:11075-11094 None:intergenic 35.0%
GCTTCGAAATTTCACTAAGA+AGG + tig0000790:11138-11157 None:intergenic 35.0%
CGAAACTATAGGTAGATTGA+CGG + tig0000790:11225-11244 None:intergenic 35.0%
TTGAGATCGTTCGAAACTAT+AGG + tig0000790:11236-11255 None:intergenic 35.0%
GTTGTTTGATTGTTCTTCTC+TGG + tig0000790:11353-11372 None:intergenic 35.0%
AATACACGAGGAGATGAAAT+CGG - tig0000790:11450-11469 Msa1336040:CDS 35.0%
TGATTTAGAGGATGATCCAA+TGG - tig0000790:11519-11538 Msa1336040:CDS 35.0%
!!! ATCCAATGGAGAGTTTTTTG+AGG - tig0000790:11533-11552 Msa1336040:CDS 35.0%
!!! TCCAATGGAGAGTTTTTTGA+GGG - tig0000790:11534-11553 Msa1336040:CDS 35.0%
TCAATCTCAGTATGATCAAG+AGG + tig0000790:11727-11746 None:intergenic 35.0%
! GTGTGTGTTGATATTTCACA+TGG - tig0000790:11882-11901 Msa1336040:CDS 35.0%
! TTATTCAAACAGGGGTGTAA+TGG + tig0000790:11917-11936 None:intergenic 35.0%
TTTCAATAAGCTGTCCCTAA+CGG - tig0000790:12126-12145 Msa1336040:intron 35.0%
CAACTTATAACATAGAGGCT+AGG + tig0000790:12201-12220 None:intergenic 35.0%
GCACTCAACTTATAACATAG+AGG + tig0000790:12206-12225 None:intergenic 35.0%
ATAGGAAGAGTTTGGCTATT+CGG - tig0000790:12296-12315 Msa1336040:intron 35.0%
! TCAAATGTTTTTCCTGGCTT+AGG + tig0000790:12340-12359 None:intergenic 35.0%
TAAGCCAGGAAAAACATTTG+AGG - tig0000790:12339-12358 Msa1336040:intron 35.0%
GAAAAACATTTGAGGACTGT+GGG - tig0000790:12347-12366 Msa1336040:intron 35.0%
! ATGGGTGCTATAAAGAAACA+AGG - tig0000790:12385-12404 Msa1336040:intron 35.0%
TATACAATGCCAAGCTTTAC+CGG - tig0000790:12426-12445 Msa1336040:intron 35.0%
! CTTTCTGGTAGAGATATCAT+TGG - tig0000790:12454-12473 Msa1336040:intron 35.0%
TGAACAGTTCAAAGAACTCA+AGG - tig0000790:12693-12712 Msa1336040:intron 35.0%
TTACCCGAAATGATTGATCA+AGG - tig0000790:13066-13085 Msa1336040:CDS 35.0%
TCACCTTGATCAATCATTTC+GGG + tig0000790:13072-13091 None:intergenic 35.0%
GGATGAAATTGAAGCACAAT+TGG - tig0000790:13125-13144 Msa1336040:CDS 35.0%
TAAGGATCAATCTTCTCGTA+TGG - tig0000790:13185-13204 Msa1336040:CDS 35.0%
CATCAAGTCAATTAAAACCG+TGG - tig0000790:13281-13300 Msa1336040:CDS 35.0%
CGTATCCCTTTGATTATTGT+TGG - tig0000790:13577-13596 Msa1336040:CDS 35.0%
AATAGCATAGGGGGATAAAT+GGG + tig0000790:13638-13657 None:intergenic 35.0%
AAATAGCATAGGGGGATAAA+TGG + tig0000790:13639-13658 None:intergenic 35.0%
TTTGCCTGTAAATAGCATAG+GGG + tig0000790:13648-13667 None:intergenic 35.0%
!! AATGTATTCAATGGTGGACA+AGG - tig0000790:13714-13733 Msa1336040:CDS 35.0%
!! AAGGTTAGTTTCTAAGAAGC+TGG - tig0000790:13733-13752 Msa1336040:CDS 35.0%
! TTATTAGGGAGAGGTTTTTG+TGG + tig0000790:14197-14216 None:intergenic 35.0%
CGTCACAATTCATATGTCAT+TGG - tig0000790:14347-14366 Msa1336040:intron 35.0%
AATTTGTCTTCTAATTCCGC+AGG - tig0000790:14452-14471 Msa1336040:intron 35.0%
TCAAAACGAGATGCAAGAAA+AGG - tig0000790:14489-14508 Msa1336040:intron 35.0%
ATTTCTTGTGTTGTGTAGGT+GGG - tig0000790:14664-14683 Msa1336040:CDS 35.0%
AACGAAGCTACTCCTAAATT+GGG + tig0000790:14850-14869 None:intergenic 35.0%
! TTTGTATCTGGTGGATCAAT+TGG - tig0000790:14951-14970 Msa1336040:CDS 35.0%
CTAGTGGAATTTACAGTTGA+AGG + tig0000790:15023-15042 None:intergenic 35.0%
!!! TACTCCAGAATTTTGACTAG+TGG + tig0000790:15039-15058 None:intergenic 35.0%
!! CAAAATTCTGGAGTAAATCC+TGG - tig0000790:15044-15063 Msa1336040:CDS 35.0%
! GGTGAAGTCTTGATTTGATT+TGG - tig0000790:15282-15301 Msa1336040:five_prime_UTR 35.0%
GAGATGTCGAAGAGAAAGTT+CGG - tig0000790:11178-11197 Msa1336040:CDS 40.0%
AAGAGAAAGTTCGGATTCGA+AGG - tig0000790:11187-11206 Msa1336040:intron 40.0%
AAGTTCGGATTCGAAGGTTT+CGG - tig0000790:11193-11212 Msa1336040:intron 40.0%
CATCGTACTCGATGTTATCA+AGG + tig0000790:11324-11343 None:intergenic 40.0%
! AACAACAACGATGATAACGC+CGG - tig0000790:11373-11392 Msa1336040:CDS 40.0%
CGATCCATTAGATGCATTCA+TGG - tig0000790:11423-11442 Msa1336040:CDS 40.0%
CCTTCCATGAATGCATCTAA+TGG + tig0000790:11430-11449 None:intergenic 40.0%
CCATTAGATGCATTCATGGA+AGG - tig0000790:11427-11446 Msa1336040:CDS 40.0%
ATTCATGGAAGGAATACACG+AGG - tig0000790:11438-11457 Msa1336040:CDS 40.0%
CTATCTTCCACTTTCTCCTT+CGG + tig0000790:11490-11509 None:intergenic 40.0%
TGCTGGATATGATTCTGATG+AGG - tig0000790:11600-11619 Msa1336040:CDS 40.0%
TGGATATGATTCTGATGAGG+AGG - tig0000790:11603-11622 Msa1336040:CDS 40.0%
ATCAATCAAACCAGCATCCA+CGG + tig0000790:11647-11666 None:intergenic 40.0%
GTATGATCAAGAGGAGCAAT+AGG + tig0000790:11718-11737 None:intergenic 40.0%
AAGCTATCTTGGAGAGCTTA+TGG - tig0000790:12064-12083 Msa1336040:intron 40.0%
! GTGTTTTGTGTGCTTGATAC+AGG - tig0000790:12247-12266 Msa1336040:intron 40.0%
TAGGAAGAGTTTGGCTATTC+GGG - tig0000790:12297-12316 Msa1336040:intron 40.0%
! CAGTCCTCAAATGTTTTTCC+TGG + tig0000790:12346-12365 None:intergenic 40.0%
GGAAAAACATTTGAGGACTG+TGG - tig0000790:12346-12365 Msa1336040:intron 40.0%
! TGGGTTTGCTCCACAAATTA+TGG - tig0000790:12366-12385 Msa1336040:intron 40.0%
! GGGTTTGCTCCACAAATTAT+GGG - tig0000790:12367-12386 Msa1336040:intron 40.0%
ATCATTGGCATAGCGAAAAC+TGG - tig0000790:12469-12488 Msa1336040:intron 40.0%
TCCTATGATCGTGCATATCA+TGG - tig0000790:12519-12538 Msa1336040:intron 40.0%
TCCATGATATGCACGATCAT+AGG + tig0000790:12523-12542 None:intergenic 40.0%
TATCTGATGTGCCAATTCTC+TGG + tig0000790:12599-12618 None:intergenic 40.0%
AGCATGTCTATCAATCTTCC+AGG + tig0000790:12745-12764 None:intergenic 40.0%
GCTGATCGAATGTTTGATCT+TGG - tig0000790:12817-12836 Msa1336040:intron 40.0%
TTGCAGAAAAGAGCAAGGTT+TGG + tig0000790:12891-12910 None:intergenic 40.0%
CATTGTTGCAGAAAAGAGCA+AGG + tig0000790:12896-12915 None:intergenic 40.0%
CAAAGTCGAAAAGTTAGCCA+GGG - tig0000790:12921-12940 Msa1336040:CDS 40.0%
GGCAATTTCTCAGAATCAGA+AGG + tig0000790:13030-13049 None:intergenic 40.0%
TGCTTCAATTTCATCCACAG+TGG + tig0000790:13121-13140 None:intergenic 40.0%
TTGATCCTTATCACCATGCA+GGG + tig0000790:13175-13194 None:intergenic 40.0%
ATTGATCCTTATCACCATGC+AGG + tig0000790:13176-13195 None:intergenic 40.0%
AGTAGCAATAAGCACATGGT+AGG + tig0000790:13238-13257 None:intergenic 40.0%
CATCAGTAGCAATAAGCACA+TGG + tig0000790:13242-13261 None:intergenic 40.0%
GTTAATAGCTTAGTTGCTGC+TGG - tig0000790:13435-13454 Msa1336040:CDS 40.0%
! GTTGATGGATCTTGCTATGA+AGG - tig0000790:13476-13495 Msa1336040:CDS 40.0%
! TATCCCCCTATGCTATTTAC+AGG - tig0000790:13641-13660 Msa1336040:CDS 40.0%
TTGCCTGTAAATAGCATAGG+GGG + tig0000790:13647-13666 None:intergenic 40.0%
TGTCTTCCTGAACGACTAAA+TGG - tig0000790:13881-13900 Msa1336040:CDS 40.0%
GTCTTCCTGAACGACTAAAT+GGG - tig0000790:13882-13901 Msa1336040:CDS 40.0%
CGTGCTAACAGGAAATTGTT+TGG - tig0000790:14040-14059 Msa1336040:CDS 40.0%
ACAGCTCGATTAAAACCAGA+GGG + tig0000790:14117-14136 None:intergenic 40.0%
AACAGCTCGATTAAAACCAG+AGG + tig0000790:14118-14137 None:intergenic 40.0%
!! TTTTCTACAGTGCTGCTACT+TGG - tig0000790:14156-14175 Msa1336040:intron 40.0%
! TTTCTACAGTGCTGCTACTT+GGG - tig0000790:14157-14176 Msa1336040:intron 40.0%
! CTGACGATGTTTTATGATGC+TGG - tig0000790:14385-14404 Msa1336040:intron 40.0%
AAACGAGATGCAAGAAAAGG+AGG - tig0000790:14492-14511 Msa1336040:intron 40.0%
GAGATAAGGACACAGCTTAT+TGG + tig0000790:14590-14609 None:intergenic 40.0%
CATTTCTTGTGTTGTGTAGG+TGG - tig0000790:14663-14682 Msa1336040:CDS 40.0%
CAGGAATGATGTCCCAATTT+AGG - tig0000790:14835-14854 Msa1336040:CDS 40.0%
CAACGAAGCTACTCCTAAAT+TGG + tig0000790:14851-14870 None:intergenic 40.0%
TCATCAACCTCCCAAAATGA+AGG - tig0000790:14876-14895 Msa1336040:CDS 40.0%
! ACTGAATCCTTCATTTTGGG+AGG + tig0000790:14886-14905 None:intergenic 40.0%
AATAAGAGACCAACACTAGC+TGG - tig0000790:14927-14946 Msa1336040:CDS 40.0%
GAATTTACAGTTGAAGGAGC+AGG + tig0000790:15017-15036 None:intergenic 40.0%
!! GCAGTTCTAAACCTAGAGAA+AGG - tig0000790:15173-15192 Msa1336040:CDS 40.0%
AACTATCTATCCCAACCTGA+TGG + tig0000790:15205-15224 None:intergenic 40.0%
CATACACTTGAGTTTGACAG+CGG + tig0000790:15246-15265 None:intergenic 40.0%
GTATAGATATTCCAGAGCCA+AGG - tig0000790:15393-15412 Msa1336040:five_prime_UTR 40.0%
GAGAGAAAATGTTTGAGCCT+TGG + tig0000790:15413-15432 None:intergenic 40.0%
ATGAAGGTGAAGGCGAGTAT+AGG + tig0000790:10928-10947 None:intergenic 45.0%
! TTTGGAGCTATGGGTAGTAG+TGG + tig0000790:11016-11035 None:intergenic 45.0%
ATCGTGTGCAAGCTCAAGTT+AGG - tig0000790:11105-11124 Msa1336040:three_prime_UTR 45.0%
TCGTGTGCAAGCTCAAGTTA+GGG - tig0000790:11106-11125 Msa1336040:three_prime_UTR 45.0%
! TGGCTTTTACGAGATGAAGG+AGG + tig0000790:11280-11299 None:intergenic 45.0%
! TCGTGGCTTTTACGAGATGA+AGG + tig0000790:11283-11302 None:intergenic 45.0%
CGTTGTCTTCGAAATTGTCG+TGG + tig0000790:11300-11319 None:intergenic 45.0%
GCCCTCAAAAAACTCTCCAT+TGG + tig0000790:11538-11557 None:intergenic 45.0%
!!! GAGTTTTTTGAGGGCGAAGA+AGG - tig0000790:11543-11562 Msa1336040:CDS 45.0%
TTGAGGGCGAAGAAGGATTT+AGG - tig0000790:11550-11569 Msa1336040:CDS 45.0%
TGAGGGCGAAGAAGGATTTA+GGG - tig0000790:11551-11570 Msa1336040:CDS 45.0%
! GAAGGATTTAGGGTTGACGT+TGG - tig0000790:11561-11580 Msa1336040:CDS 45.0%
GAGGAGTCACCTTCAATATC+AGG - tig0000790:11775-11794 Msa1336040:intron 45.0%
AGCACACTTGTGAACCGTTA+GGG + tig0000790:12143-12162 None:intergenic 45.0%
AAGCACACTTGTGAACCGTT+AGG + tig0000790:12144-12163 None:intergenic 45.0%
GTTCACAAGTGTGCTTGTGT+CGG - tig0000790:12148-12167 Msa1336040:intron 45.0%
GTTGAGTGCGATTGAACGTT+TGG - tig0000790:12217-12236 Msa1336040:intron 45.0%
AGTTTGGCTATTCGGGTATC+AGG - tig0000790:12304-12323 Msa1336040:intron 45.0%
GTTTGGCTATTCGGGTATCA+GGG - tig0000790:12305-12324 Msa1336040:intron 45.0%
GCTTGGCATTGTATAGACGT+CGG + tig0000790:12421-12440 None:intergenic 45.0%
AAAGCACAACCGGTAAAGCT+TGG + tig0000790:12438-12457 None:intergenic 45.0%
! TCTCTACCAGAAAGCACAAC+CGG + tig0000790:12448-12467 None:intergenic 45.0%
GGTGCACATATCACTCCTAT+AGG + tig0000790:12574-12593 None:intergenic 45.0%
ATGTGCACCTACCAGAGAAT+TGG - tig0000790:12585-12604 Msa1336040:intron 45.0%
TGATGTGCCAATTCTCTGGT+AGG + tig0000790:12595-12614 None:intergenic 45.0%
GGCACATCAGATATATCTCG+AGG - tig0000790:12606-12625 Msa1336040:intron 45.0%
ATACGTGTCTCTGCTGTCTA+TGG - tig0000790:12655-12674 Msa1336040:intron 45.0%
CAGTTCAAAGAACTCAAGGC+AGG - tig0000790:12697-12716 Msa1336040:intron 45.0%
! CATGCTAAAAATGAAGGCGC+TGG - tig0000790:12759-12778 Msa1336040:intron 45.0%
AATGCTCAGAGCAACTTACC+TGG - tig0000790:12783-12802 Msa1336040:intron 45.0%
AACTTACCTGGTGCTTGATG+AGG - tig0000790:12795-12814 Msa1336040:intron 45.0%
TTGGATTTGAGCCGCAAGTA+AGG - tig0000790:12836-12855 Msa1336040:intron 45.0%
CAGAAAAGAGCAAGGTTTGG+CGG + tig0000790:12888-12907 None:intergenic 45.0%
! GCTAACTTTTCGACTTTGCG+AGG + tig0000790:12919-12938 None:intergenic 45.0%
GCAAAGTCGAAAAGTTAGCC+AGG - tig0000790:12920-12939 Msa1336040:CDS 45.0%
TCACTCTGATAGGATCGGAA+AGG + tig0000790:12951-12970 None:intergenic 45.0%
CACTGTCACTCTGATAGGAT+CGG + tig0000790:12956-12975 None:intergenic 45.0%
GATCCTATCAGAGTGACAGT+GGG - tig0000790:12955-12974 Msa1336040:CDS 45.0%
! CTGATTCTGAGAAATTGCCG+TGG - tig0000790:13031-13050 Msa1336040:CDS 45.0%
GGTAATTTCTCCAGAAGCCA+CGG + tig0000790:13051-13070 None:intergenic 45.0%
! TTCATCCACAGTGGCCTTTT+TGG + tig0000790:13112-13131 None:intergenic 45.0%
! TTTAAAGTTGCTGCCCTGCA+TGG - tig0000790:13159-13178 Msa1336040:CDS 45.0%
GACATGCATGTTCATCGCAT+TGG - tig0000790:13330-13349 Msa1336040:CDS 45.0%
GTTCATCGCATTGGAAGAAC+AGG - tig0000790:13339-13358 Msa1336040:CDS 45.0%
! CAAAAAGAAGCACGGTTTGC+TGG - tig0000790:13405-13424 Msa1336040:CDS 45.0%
ATTAAAACCAGAGGGGAGAC+AGG + tig0000790:14109-14128 None:intergenic 45.0%
CAGCTCGATTAAAACCAGAG+GGG + tig0000790:14116-14135 None:intergenic 45.0%
!! AGCTGTTGACTCTGTCATTC+TGG - tig0000790:14131-14150 Msa1336040:intron 45.0%
TGTCTTCTAATTCCGCAGGA+CGG - tig0000790:14456-14475 Msa1336040:intron 45.0%
GAGATGCAAGAAAAGGAGGT+AGG - tig0000790:14496-14515 Msa1336040:intron 45.0%
GACTCTACTGTGCAGAGATA+AGG + tig0000790:14604-14623 None:intergenic 45.0%
TGTTGTGTAGGTGGGAGAAA+AGG - tig0000790:14672-14691 Msa1336040:CDS 45.0%
GCTGTAAATTCTCTGCGAAC+AGG - tig0000790:14816-14835 Msa1336040:CDS 45.0%
GATACAAAGCCAGCTAGTGT+TGG + tig0000790:14939-14958 None:intergenic 45.0%
!! ACACTAGCTGGCTTTGTATC+TGG - tig0000790:14939-14958 Msa1336040:CDS 45.0%
! GTATCTGGTGGATCAATTGG+CGG - tig0000790:14954-14973 Msa1336040:CDS 45.0%
CTAAACCTAGAGAAAGGCGA+AGG - tig0000790:15179-15198 Msa1336040:exon 45.0%
AAATGTTTGAGCCTTGGCTC+TGG + tig0000790:15407-15426 None:intergenic 45.0%
GTCGTACTCATGATAGAGGT+AGG + tig0000790:15438-15457 None:intergenic 45.0%
ACCAGAAACTCGACCATACG+CGG - tig0000790:10959-10978 Msa1336040:three_prime_UTR 50.0%
GGAACGTAAAGACGTTGAGG+AGG + tig0000790:11259-11278 None:intergenic 50.0%
GGAGGAACGTAAAGACGTTG+AGG + tig0000790:11262-11281 None:intergenic 50.0%
! AACAACGATGATAACGCCGG+TGG - tig0000790:11376-11395 Msa1336040:CDS 50.0%
TCCACTTTCTCCTTCGGCTT+CGG + tig0000790:11484-11503 None:intergenic 50.0%
! TTTAGGGTTGACGTTGGCGT+CGG - tig0000790:11567-11586 Msa1336040:CDS 50.0%
TTATGCTGCTGCTAAAGCCG+TGG - tig0000790:11627-11646 Msa1336040:CDS 50.0%
! GGGTTTGAAGTTCCTAAGCC+AGG - tig0000790:12325-12344 Msa1336040:intron 50.0%
! GCTTTACCGGTTGTGCTTTC+TGG - tig0000790:12439-12458 Msa1336040:intron 50.0%
! GGCATAGCGAAAACTGGTTC+TGG - tig0000790:12475-12494 Msa1336040:intron 50.0%
GGATCAGCCTGAACTTCAGA+AGG - tig0000790:12540-12559 Msa1336040:intron 50.0%
TCAGCCTGAACTTCAGAAGG+AGG - tig0000790:12543-12562 Msa1336040:intron 50.0%
!! CCTTCCTCCTTCTGAAGTTC+AGG + tig0000790:12550-12569 None:intergenic 50.0%
CCTGAACTTCAGAAGGAGGA+AGG - tig0000790:12547-12566 Msa1336040:intron 50.0%
CAGAAGGAGGAAGGTCCTAT+AGG - tig0000790:12556-12575 Msa1336040:intron 50.0%
GAGATAGTTGTTGCTACGCC+TGG - tig0000790:12724-12743 Msa1336040:intron 50.0%
CCAACGATGGACCTTACTTG+CGG + tig0000790:12850-12869 None:intergenic 50.0%
GGTCCATCGTTGGTCAGATT+AGG - tig0000790:12857-12876 Msa1336040:intron 50.0%
CATCGTTGGTCAGATTAGGC+CGG - tig0000790:12861-12880 Msa1336040:intron 50.0%
AGGATCGGAAAGGATTTCCC+TGG + tig0000790:12941-12960 None:intergenic 50.0%
CGATCCTATCAGAGTGACAG+TGG - tig0000790:12954-12973 Msa1336040:CDS 50.0%
TCTCCCACTGTCACTCTGAT+AGG + tig0000790:12961-12980 None:intergenic 50.0%
TATCAGAGTGACAGTGGGAG+AGG - tig0000790:12960-12979 Msa1336040:CDS 50.0%
TGAGAAATTGCCGTGGCTTC+TGG - tig0000790:13038-13057 Msa1336040:CDS 50.0%
TGCTTCCAAAAAGGCCACTG+TGG - tig0000790:13104-13123 Msa1336040:CDS 50.0%
GAAGCACAATTGGGTCAGAG+AGG - tig0000790:13135-13154 Msa1336040:CDS 50.0%
CTTGATGTCAAGACCACGAG+CGG + tig0000790:13268-13287 None:intergenic 50.0%
!! AGCACGGTTTGCTGGTGAAT+TGG - tig0000790:13413-13432 Msa1336040:CDS 50.0%
TGCTGGTCAGAATGTGTCCA+CGG - tig0000790:13452-13471 Msa1336040:CDS 50.0%
GAATGTGTCCACGGAGTTGA+TGG - tig0000790:13461-13480 Msa1336040:CDS 50.0%
AGCAAGATCCATCAACTCCG+TGG + tig0000790:13472-13491 None:intergenic 50.0%
CACAGCCCATTTAGTCGTTC+AGG + tig0000790:13890-13909 None:intergenic 50.0%
AATAAGTCCTGTCTCCCCTC+TGG - tig0000790:14099-14118 Msa1336040:intron 50.0%
GTCTTCTAATTCCGCAGGAC+GGG - tig0000790:14457-14476 Msa1336040:intron 50.0%
GTAGGTGGGAGAAAAGGCAA+AGG - tig0000790:14678-14697 Msa1336040:CDS 50.0%
AGAAAAGGCAAAGGCAGAGG+TGG - tig0000790:14687-14706 Msa1336040:CDS 50.0%
GAAAAGGCAAAGGCAGAGGT+GGG - tig0000790:14688-14707 Msa1336040:CDS 50.0%
AAAAGGCAAAGGCAGAGGTG+GGG - tig0000790:14689-14708 Msa1336040:CDS 50.0%
!!! GTGGATTTTGGCTTGGGCAT+TGG - tig0000790:14738-14757 Msa1336040:CDS 50.0%
GCATCATCTAACGCAGTTCC+AGG - tig0000790:14783-14802 Msa1336040:CDS 50.0%
CATCTAACGCAGTTCCAGGT+CGG - tig0000790:14787-14806 Msa1336040:CDS 50.0%
!! CTAGCTGGCTTTGTATCTGG+TGG - tig0000790:14942-14961 Msa1336040:CDS 50.0%
! CTGTTCGTGTTGTTCTGACC+AGG + tig0000790:15065-15084 None:intergenic 50.0%
CTGGTCAGAACAACACGAAC+AGG - tig0000790:15063-15082 Msa1336040:CDS 50.0%
ACCGCGTATGGTCGAGTTTC+TGG + tig0000790:10963-10982 None:intergenic 55.0%
AGAAACTCGACCATACGCGG+TGG - tig0000790:10962-10981 Msa1336040:three_prime_UTR 55.0%
GAAACTCGACCATACGCGGT+GGG - tig0000790:10963-10982 Msa1336040:three_prime_UTR 55.0%
! GTTGTTGTTCCCACCGCGTA+TGG + tig0000790:10975-10994 None:intergenic 55.0%
! AACGATGATAACGCCGGTGG+TGG - tig0000790:11379-11398 Msa1336040:CDS 55.0%
CTCTTCACAACCACCACCAC+CGG + tig0000790:11395-11414 None:intergenic 55.0%
ACTTTCTCCTTCGGCTTCGG+TGG + tig0000790:11481-11500 None:intergenic 55.0%
ACCGAAGCCGAAGGAGAAAG+TGG - tig0000790:11480-11499 Msa1336040:CDS 55.0%
CGTGTCTCTGCTGTCTATGG+TGG - tig0000790:12658-12677 Msa1336040:intron 55.0%
GATCAGCCTCATCAAGCACC+AGG + tig0000790:12804-12823 None:intergenic 55.0%
CCGCAAGTAAGGTCCATCGT+TGG - tig0000790:12847-12866 Msa1336040:intron 55.0%
CGGCCTAATCTGACCAACGA+TGG + tig0000790:12863-12882 None:intergenic 55.0%
AAGAGCAAGGTTTGGCGGTC+CGG + tig0000790:12883-12902 None:intergenic 55.0%
AGAGTGACAGTGGGAGAGGT+GGG - tig0000790:12964-12983 Msa1336040:CDS 55.0%
TGCTGCCCTGCATGGTGATA+AGG - tig0000790:13167-13186 Msa1336040:CDS 55.0%
ATTGGAAGAACAGGCCGTGC+TGG - tig0000790:13348-13367 Msa1336040:CDS 55.0%
CTGCTGGGTTTCGTGCTAAC+AGG - tig0000790:14029-14048 Msa1336040:CDS 55.0%
GGGAGAAAAGGCAAAGGCAG+AGG - tig0000790:14684-14703 Msa1336040:CDS 55.0%
AAAGGCAAAGGCAGAGGTGG+GGG - tig0000790:14690-14709 Msa1336040:CDS 55.0%
!!! CGCGGAGTGGATTTTGGCTT+GGG - tig0000790:14732-14751 Msa1336040:CDS 55.0%
TTTACAGCAGCAGACCGACC+TGG + tig0000790:14804-14823 None:intergenic 55.0%
GATGGCCTTCGCCTTTCTCT+AGG + tig0000790:15187-15206 None:intergenic 55.0%
AGAGAAAGGCGAAGGCCATC+AGG - tig0000790:15187-15206 Msa1336040:exon 55.0%
AAAGGCGAAGGCCATCAGGT+TGG - tig0000790:15191-15210 Msa1336040:exon 55.0%
AAGGCGAAGGCCATCAGGTT+GGG - tig0000790:15192-15211 Msa1336040:exon 55.0%
! GATGATAACGCCGGTGGTGG+TGG - tig0000790:11382-11401 Msa1336040:CDS 60.0%
!! CGGTGGTGGTGGTTGTGAAG+AGG - tig0000790:11393-11412 Msa1336040:CDS 60.0%
TTCTCCTTCGGCTTCGGTGG+CGG + tig0000790:11478-11497 None:intergenic 60.0%
GCTGCTAAAGCCGTGGATGC+TGG - tig0000790:11634-11653 Msa1336040:CDS 60.0%
CAGAGTGACAGTGGGAGAGG+TGG - tig0000790:12963-12982 Msa1336040:CDS 60.0%
GAGTGACAGTGGGAGAGGTG+GGG - tig0000790:12965-12984 Msa1336040:CDS 60.0%
GCTACTGATGTTGCCGCTCG+TGG - tig0000790:13252-13271 Msa1336040:CDS 60.0%
! AACAGGCCGTGCTGGTGACA+AGG - tig0000790:13356-13375 Msa1336040:CDS 60.0%
CTCCGTCCTTGTCACCAGCA+CGG + tig0000790:13365-13384 None:intergenic 60.0%
TTCCGCAGGACGGGAGATTC+AGG - tig0000790:14466-14485 Msa1336040:intron 60.0%
GACCTGAATCTCCCGTCCTG+CGG + tig0000790:14471-14490 None:intergenic 60.0%
!! GGTGTGCGCGGAGTGGATTT+TGG - tig0000790:14726-14745 Msa1336040:CDS 60.0%
!!! GCGCGGAGTGGATTTTGGCT+TGG - tig0000790:14731-14750 Msa1336040:CDS 60.0%
GCGTCGGATGCGTTGCATGC+TGG - tig0000790:11583-11602 Msa1336040:CDS 65.0%
GACAGTGGGAGAGGTGGGGA+TGG - tig0000790:12969-12988 Msa1336040:CDS 65.0%
! GGCCGTGCTGGTGACAAGGA+CGG - tig0000790:13360-13379 Msa1336040:CDS 65.0%
! AAAGGCAGAGGTGGGGGTGC+AGG - tig0000790:14696-14715 Msa1336040:CDS 65.0%
! GCAGGTGGCAAAGGTGTGCG+CGG - tig0000790:14714-14733 Msa1336040:CDS 65.0%
! TGGCAAAGGTGTGCGCGGAG+TGG - tig0000790:14719-14738 Msa1336040:CDS 65.0%
! GGTGGGGGTGCAGGTGGCAA+AGG - tig0000790:14705-14724 Msa1336040:CDS 70.0%
! GGCAGAGGTGGGGGTGCAGG+TGG - tig0000790:14699-14718 Msa1336040:CDS 75.0%
! GGCGCCGCCACCGAAGCCGA+AGG - tig0000790:11471-11490 Msa1336040:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0000790 gene 10918 15458 10918 ID=Msa1336040;Name=Msa1336040
tig0000790 mRNA 10918 15458 10918 ID=Msa1336040-mRNA-1;Parent=Msa1336040;Name=Msa1336040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=263|1|1|1|1|1|5|236|777
tig0000790 exon 10918 11199 10918 ID=Msa1336040-mRNA-1:exon:533;Parent=Msa1336040-mRNA-1
tig0000790 exon 11292 11694 11292 ID=Msa1336040-mRNA-1:exon:532;Parent=Msa1336040-mRNA-1
tig0000790 exon 11863 11902 11863 ID=Msa1336040-mRNA-1:exon:531;Parent=Msa1336040-mRNA-1
tig0000790 exon 12879 14107 12879 ID=Msa1336040-mRNA-1:exon:530;Parent=Msa1336040-mRNA-1
tig0000790 exon 14580 15458 14580 ID=Msa1336040-mRNA-1:exon:529;Parent=Msa1336040-mRNA-1
tig0000790 five_prime_UTR 15196 15458 15196 ID=Msa1336040-mRNA-1:five_prime_utr;Parent=Msa1336040-mRNA-1
tig0000790 CDS 14580 15195 14580 ID=Msa1336040-mRNA-1:cds;Parent=Msa1336040-mRNA-1
tig0000790 CDS 12879 14107 12879 ID=Msa1336040-mRNA-1:cds;Parent=Msa1336040-mRNA-1
tig0000790 CDS 11863 11902 11863 ID=Msa1336040-mRNA-1:cds;Parent=Msa1336040-mRNA-1
tig0000790 CDS 11292 11694 11292 ID=Msa1336040-mRNA-1:cds;Parent=Msa1336040-mRNA-1
tig0000790 CDS 11154 11199 11154 ID=Msa1336040-mRNA-1:cds;Parent=Msa1336040-mRNA-1
tig0000790 three_prime_UTR 10918 11153 10918 ID=Msa1336040-mRNA-1:three_prime_utr;Parent=Msa1336040-mRNA-1
Gene Sequence

>Msa1336040

ATGTCGAAGAGAAAGTTCGGATTCGAAGGTTTCGGCATAAACCGTCAATCTACCTATAGTTTCGAACGATCTCAACCTCCTCAACGTCTTTACGTTCCTCCTTCATCTCGTAAAAGCCACGACAATTTCGAAGACAACGACCTTGATAACATCGAGTACGATGATGATTCCAGAGAAGAACAATCAAACAACAACAACAACGATGATAACGCCGGTGGTGGTGGTTGTGAAGAGGCTGAAATCGATCCATTAGATGCATTCATGGAAGGAATACACGAGGAGATGAAATCGGCGCCGCCACCGAAGCCGAAGGAGAAAGTGGAAGATAGATATAAAGATGATTTAGAGGATGATCCAATGGAGAGTTTTTTGAGGGCGAAGAAGGATTTAGGGTTGACGTTGGCGTCGGATGCGTTGCATGCTGGATATGATTCTGATGAGGAGGTTTATGCTGCTGCTAAAGCCGTGGATGCTGGTTTGATTGATTATGATTCTGATGATAATCCTATTGTTCTTGACAAGAAGAAAATCGAACCTATTGCTCCTCTTGATCATACTGAGATTGATTATGAGCCTTTTAACAAGGATTTTTATGAGGAGTCACCTTCAATATCAGGTATGAGTGAGCAAGATGTAACTGATTATAGGAAGAGTTTGGCTATTCGGGTATCAGGGTTTGAAGTTCCTAAGCCAGGAAAAACATTTGAGGACTGTGGGTTTGCTCCACAAATTATGGGTGCTATAAAGAAACAAGGTTATGAGAAGCCGACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGCATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATCGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATAGGAGTGATATGTGCACCTACCAGAGAATTGGCACATCAGATATATCTCGAGGCCAAGAAATTTGCTAAAGCATATGGAATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACGCCTGGAAGATTGATAGACATGCTAAAAATGAAGGCGCTGGCAATGCTCAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTTGATCTTGGATTTGAGCCGCAAGTAAGGTCCATCGTTGGTCAGATTAGGCCGGACCGCCAAACCTTGCTCTTTTCTGCAACAATGCCTCGCAAAGTCGAAAAGTTAGCCAGGGAAATCCTTTCCGATCCTATCAGAGTGACAGTGGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCTGATTCTGAGAAATTGCCGTGGCTTCTGGAGAAATTACCCGAAATGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAAGCACAATTGGGTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAATCTTCTCGTATGGATATTTTACAGAAATTTAAATCTGGCACCTACCATGTGCTTATTGCTACTGATGTTGCCGCTCGTGGTCTTGACATCAAGTCAATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTTCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGACGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCACGGAGTTGATGGATCTTGCTATGAAGGACGGGAGATTCAGGTCAAAACGAGATGCAAGAAAAGGAGGTGGGAGAAAAGGCAAAGGCAGAGGTGGGGGTGCAGGTGGCAAAGGTGTGCGCGGAGTGGATTTTGGCTTGGGCATTGGATATAGTACAGAGTCAAACAATGCATCATCTAACGCAGTTCCAGGTCGGTCTGCTGCTGTAAATTCTCTGCGAACAGGAATGATGTCCCAATTTAGGAGTAGCTTCGTTGCTGCATCATCAACCTCCCAAAATGAAGGATTCAGTAATAATACAAGCATGGCTGTTAATAAGAGACCAACACTAGCTGGCTTTGTATCTGGTGGATCAATTGGCGGCGATATAAATACTCATCAGCAAACTGCTTCATACAATCCTGCTCCTTCAACTGTAAATTCCACTAGTCAAAATTCTGGAGTAAATCCTGGTCAGAACAACACGAACAGTTCTAAACCTAGAGAAAGGCGAAGGCCATCAGGTTGGGATAGATAG
Protein sequence

>Msa1336040

MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRKSHDNFEDNDLDNIEYDDDSREEQSNNNNNDDNAGGGGCEEAEIDPLDAFMEGIHEEMKSAPPPKPKEKVEDRYKDDLEDDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYEPFNKDFYEESPSISGMSEQDVTDYRKSLAIRVSGFEVPKPGKTFEDCGFAPQIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALAMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIEAQLGQRGFKVAALHGDKDQSSRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSTESNNASSNAVPGRSAAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNNTSMAVNKRPTLAGFVSGGSIGGDINTHQQTASYNPAPSTVNSTSQNSGVNPGQNNTNSSKPRERRRPSGWDR*