AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1088090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1088090 MtrunA17_Chr2g0303331 78.873 71 15 0 63 133 211 281 8.56e-30 112
Msa1088090 MtrunA17_Chr2g0303331 90.625 64 5 1 1 63 1 64 2.69e-28 108
Msa1088090 MtrunA17_Chr4g0018601 65.217 69 24 0 63 131 189 257 2.36e-19 82.8
Msa1088090 MtrunA17_Chr2g0281961 70.588 51 15 0 28 78 22 72 3.34e-15 67.8
Msa1088090 MtrunA17_Chr1g0170751 65.385 52 18 0 74 125 195 246 1.12e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 116 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAAGAATTTCAAAATATT+TGG 0.152880 7_3:-1086544 Msa1088090:three_prime_UTR
CTTTGATTATTTAAATTTCT+AGG 0.188454 7_3:+1087555 None:intergenic
AACAAAATGTTTAGGCGTTT+TGG 0.218255 7_3:-1086664 Msa1088090:three_prime_UTR
AGCAGCCTTCCCATGATAAT+TGG 0.226511 7_3:+1086443 None:intergenic
AGTTGATCAAATGGGAAAAT+TGG 0.247196 7_3:-1086301 Msa1088090:three_prime_UTR
TATACAAATCTTAGACTTGA+TGG 0.274286 7_3:-1086205 Msa1088090:three_prime_UTR
CATCCAGCAAAGAAGGAAAA+AGG 0.274469 7_3:-1087489 Msa1088090:three_prime_UTR
TTCTGTTGGTGCAGGATTGC+TGG 0.295279 7_3:-1087832 Msa1088090:intron
TGGACTATGGAGGATGCTGC+TGG 0.325838 7_3:-1088415 Msa1088090:CDS
GAGGATTTGAGTGGAGAAGC+TGG 0.330533 7_3:-1088520 Msa1088090:CDS
ATATAACCAGGAGGTTTGTT+AGG 0.333419 7_3:+1086760 None:intergenic
TGGCACTGACTCTTGGACTA+TGG 0.357408 7_3:-1088428 Msa1088090:CDS
TTCAGCAATGGTTGTTGCAC+TGG 0.366606 7_3:+1086868 None:intergenic
CTGTTCTGTAGTTGATCAAA+TGG 0.376474 7_3:-1086310 Msa1088090:three_prime_UTR
TTGTTGGACTCCAGTTCATC+TGG 0.392081 7_3:-1087421 Msa1088090:three_prime_UTR
AAAAGTAATAGAATAATAAC+TGG 0.393104 7_3:+1086230 None:intergenic
GATGACTTCAAAATGCAAAC+TGG 0.393363 7_3:-1087351 Msa1088090:three_prime_UTR
ACAAATTCATCGTTTACAAT+TGG 0.408584 7_3:-1087291 Msa1088090:three_prime_UTR
CTCAAAGCTTTGAACACGCT+TGG 0.409796 7_3:+1086487 None:intergenic
GGGTGGTTTCTTCTTCCTCA+TGG 0.413199 7_3:+1086978 None:intergenic
AAAACGATATGAATATTTCA+TGG 0.414656 7_3:+1086181 None:intergenic
TAAGTTGGATAAAGTGGTTT+CGG 0.415304 7_3:-1088479 Msa1088090:CDS
CGCAGTTAAGTTGGATAAAG+TGG 0.421460 7_3:-1088485 Msa1088090:CDS
CAATAGTTGGCACTGACTCT+TGG 0.426514 7_3:-1088435 Msa1088090:CDS
GATTAAAGATCCAATTATCA+TGG 0.426616 7_3:-1086453 Msa1088090:three_prime_UTR
AGTATTTATACTAACATAGT+TGG 0.431144 7_3:-1086258 Msa1088090:three_prime_UTR
CAAACCTTAACAAAATGTTT+AGG 0.433748 7_3:-1086672 Msa1088090:three_prime_UTR
AATTGTAAACGATGAATTTG+TGG 0.437999 7_3:+1087293 None:intergenic
GGACTATGGAGGATGCTGCT+GGG 0.446764 7_3:-1088414 Msa1088090:CDS
GAATCCAGAGAACCATTCAT+TGG 0.447830 7_3:+1087456 None:intergenic
ATTCTCCAGACGGTGATTGT+TGG 0.448044 7_3:-1087437 Msa1088090:three_prime_UTR
TCAGGTGAAACCAGATGAAC+TGG 0.448957 7_3:+1087411 None:intergenic
GAGGATGCTGCTGGGGCCGC+AGG 0.453197 7_3:-1088406 Msa1088090:intron
CACCTGAACATTCCAAGAAA+AGG 0.455137 7_3:-1087395 Msa1088090:three_prime_UTR
TGACGAGGAACAAGATTTGT+TGG 0.456916 7_3:-1087628 Msa1088090:three_prime_UTR
TACTATGCATCCAGCAAAGA+AGG 0.457588 7_3:-1087496 Msa1088090:three_prime_UTR
AGGATTTGAGTGGAGAAGCT+GGG 0.462030 7_3:-1088519 Msa1088090:CDS
GGATAAAGTGGTTTCGGAAA+GGG 0.463296 7_3:-1088473 Msa1088090:CDS
AAAGCGTAAATATAATTTCA+AGG 0.466648 7_3:-1087520 Msa1088090:three_prime_UTR
AGACCCAATGAATGGTTCTC+TGG 0.468093 7_3:-1087460 Msa1088090:three_prime_UTR
AAACCACCCATAGCTGGAAC+TGG 0.469133 7_3:-1086964 Msa1088090:three_prime_UTR
TGATCAACTGTATTAACAAC+AGG 0.474218 7_3:+1087585 None:intergenic
TGAGAATGCCGCAGTTAAGT+TGG 0.474499 7_3:-1088494 Msa1088090:CDS
GAAACATCCAATCTATTCTC+AGG 0.477155 7_3:+1087204 None:intergenic
AAAGCTTACCCATCAAAAGT+TGG 0.482340 7_3:+1086382 None:intergenic
TTTGTTAAGGTTTGTTTCTG+AGG 0.484036 7_3:+1086681 None:intergenic
CTGTAATTGCGAGTGCCGAT+TGG 0.491432 7_3:-1087032 Msa1088090:three_prime_UTR
AAGAAGAAACCACCCATAGC+TGG 0.497809 7_3:-1086970 Msa1088090:three_prime_UTR
GCTAATGCAATTGTAGAAGA+AGG 0.499053 7_3:-1087780 Msa1088090:CDS
TGTTCTGTAGTTGATCAAAT+GGG 0.502643 7_3:-1086309 Msa1088090:three_prime_UTR
CATTACTTGCTTTACAAACA+AGG 0.503682 7_3:+1086411 None:intergenic
AGGATTGCTGGTATCTATTG+AGG 0.504951 7_3:-1087820 Msa1088090:CDS
AACAAATCCAGTTCCAGCTA+TGG 0.506353 7_3:+1086957 None:intergenic
ATTTCACGTACGGATGAACT+TGG 0.508981 7_3:-1087003 Msa1088090:three_prime_UTR
GAGAAAAGTATGTTCTCCAT+GGG 0.509518 7_3:+1087092 None:intergenic
GGCACTCAAATTACTGAGCA+AGG 0.511862 7_3:-1087759 Msa1088090:CDS
GTTAATACAGTTGATCAAGC+TGG 0.520536 7_3:-1087579 Msa1088090:three_prime_UTR
TTGTTAAGGTTTGTTTCTGA+GGG 0.523108 7_3:+1086682 None:intergenic
CGCTTGGAGTGTAATTAAGC+TGG 0.523239 7_3:+1086503 None:intergenic
GGAGTCAAATATGAGGCAAA+AGG 0.528193 7_3:-1087694 Msa1088090:CDS
AATCCAGAGAACCATTCATT+GGG 0.530099 7_3:+1087457 None:intergenic
GCGAGGTATCAATCAATAGT+TGG 0.532321 7_3:-1088448 Msa1088090:CDS
AAGTTCATAACAAGCTCAGC+AGG 0.539791 7_3:+1086724 None:intergenic
TGAGAAAAGTATGTTCTCCA+TGG 0.541750 7_3:+1087091 None:intergenic
TGGATAAAGTGGTTTCGGAA+AGG 0.542858 7_3:-1088474 Msa1088090:CDS
ACGTGAAATCTCTTTCCAAT+CGG 0.545841 7_3:+1087017 None:intergenic
CTTGTTTGTAAAGCAAGTAA+TGG 0.548303 7_3:-1086410 Msa1088090:three_prime_UTR
TCTTAAAGACCACTCTTGCA+CGG 0.549177 7_3:+1086599 None:intergenic
AGGTATATGTCCACAGTTGT+TGG 0.550284 7_3:-1088586 Msa1088090:CDS
GGAGTCCAACAATCACCGTC+TGG 0.550831 7_3:+1087432 None:intergenic
GACTATGGAGGATGCTGCTG+GGG 0.550868 7_3:-1088413 Msa1088090:CDS
GGATTGCTGGTATCTATTGA+GGG 0.552143 7_3:-1087819 Msa1088090:CDS
CAGATAGTTGAGGATTTGAG+TGG 0.552151 7_3:-1088529 Msa1088090:CDS
CAATTGGTGACTGTATTCGT+AGG 0.553764 7_3:-1087275 Msa1088090:three_prime_UTR
TCATGGAAGAAGTAGAAAAG+AGG 0.555897 7_3:-1088606 Msa1088090:CDS
GCATTCTCATTTATATAACC+AGG 0.556106 7_3:+1086748 None:intergenic
GCTGGTATCTATTGAGGGCG+AGG 0.558742 7_3:-1087814 Msa1088090:CDS
GTCATCATCAAAGTGATCAA+AGG 0.562624 7_3:+1087368 None:intergenic
GGGATGTCAGACCCAATGAA+TGG 0.563115 7_3:-1087468 Msa1088090:three_prime_UTR
TTGGAAAGAGATTTCACGTA+CGG 0.566404 7_3:-1087013 Msa1088090:three_prime_UTR
ACAAATCCAGTTCCAGCTAT+GGG 0.567218 7_3:+1086958 None:intergenic
GCAGATGCAGAGGTAGCTCT+AGG 0.568515 7_3:-1086571 Msa1088090:three_prime_UTR
ATTAAAGATCCAATTATCAT+GGG 0.573083 7_3:-1086452 Msa1088090:three_prime_UTR
TCAACGAGGAGTCAAATATG+AGG 0.576367 7_3:-1087701 Msa1088090:CDS
TAAGAAGCGTGCAGATGCAG+AGG 0.578058 7_3:-1086581 Msa1088090:three_prime_UTR
AGTAAACAGCCGTGCAAGAG+TGG 0.578769 7_3:-1086608 Msa1088090:three_prime_UTR
ATGACTTCAAAATGCAAACT+GGG 0.578797 7_3:-1087350 Msa1088090:three_prime_UTR
GTGACTTGCATTGTACAGAC+TGG 0.580130 7_3:-1086918 Msa1088090:three_prime_UTR
CGTACTGTTGCATGATGGAA+AGG 0.584553 7_3:-1087730 Msa1088090:CDS
ACATTCCACAGACTCGTCTA+CGG 0.587754 7_3:+1088558 None:intergenic
AATTGGTGACTGTATTCGTA+GGG 0.592472 7_3:-1087274 Msa1088090:three_prime_UTR
AAGATCCAATTATCATGGGA+AGG 0.597025 7_3:-1086448 Msa1088090:three_prime_UTR
TGCTAAGCCACCAAAGCCAG+CGG 0.601153 7_3:-1086815 Msa1088090:three_prime_UTR
GAGACTCCTAACAAACCTCC+TGG 0.609889 7_3:-1086766 Msa1088090:three_prime_UTR
AGCCACGTACTGTTGCATGA+TGG 0.612675 7_3:-1087735 Msa1088090:CDS
AGAGCAAGAATGCGTTGACA+AGG 0.619110 7_3:-1087667 Msa1088090:CDS
CAGAAGACAGATGTAGACAT+TGG 0.619725 7_3:-1087234 Msa1088090:three_prime_UTR
GGTTCTCTGGATTCTCCAGA+CGG 0.624667 7_3:-1087447 Msa1088090:three_prime_UTR
TGAGGGAACAGATTTGAACT+CGG 0.624710 7_3:+1086699 None:intergenic
GCTATCTTCACTTCAGTGTG+TGG 0.627339 7_3:-1087124 Msa1088090:three_prime_UTR
TTCCATCATGCAACAGTACG+TGG 0.628345 7_3:+1087733 None:intergenic
CACTTTATCCAACTTAACTG+CGG 0.629486 7_3:+1088486 None:intergenic
TACGGTTTCACCAACAACTG+TGG 0.637008 7_3:+1088576 None:intergenic
GCACTCAAATTACTGAGCAA+GGG 0.637759 7_3:-1087758 Msa1088090:CDS
CACTGACTCTTGGACTATGG+AGG 0.645014 7_3:-1088425 Msa1088090:CDS
ATGTGGTGGTCAGATAGTTG+AGG 0.654622 7_3:-1088539 Msa1088090:CDS
AATCCAGTTCCAGCTATGGG+TGG 0.659024 7_3:+1086961 None:intergenic
TTCTCATTTATATAACCAGG+AGG 0.660172 7_3:+1086751 None:intergenic
TGAAACCGTAGACGAGTCTG+TGG 0.661034 7_3:-1088563 Msa1088090:CDS
ACAGACTGGGTCATTGACAA+TGG 0.673767 7_3:-1086904 Msa1088090:three_prime_UTR
AGAAAAGTATGTTCTCCATG+GGG 0.678685 7_3:+1087093 None:intergenic
CGGATGAACTTGGCACCATG+AGG 0.680302 7_3:-1086993 Msa1088090:three_prime_UTR
GACGAGTCTGTGGAATGTGG+TGG 0.693871 7_3:-1088553 Msa1088090:CDS
TGACTTGCATTGTACAGACT+GGG 0.698935 7_3:-1086917 Msa1088090:three_prime_UTR
TGGTTTCGGAAAGGGAAGCG+AGG 0.703535 7_3:-1088465 Msa1088090:CDS
GTAGACGAGTCTGTGGAATG+TGG 0.748050 7_3:-1088556 Msa1088090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTTTAAATAA+AGG - chr7_3:1088601-1088620 Msa1088090:CDS 0.0%
!! CTTTGATTATTTAAATTTCT+AGG + chr7_3:1087204-1087223 None:intergenic 15.0%
!! AAAAGTAATAGAATAATAAC+TGG + chr7_3:1088529-1088548 None:intergenic 15.0%
!!! TAATATTGTTGTTGATATCA+TGG - chr7_3:1086526-1086545 Msa1088090:three_prime_UTR 20.0%
!! AAAGCGTAAATATAATTTCA+AGG - chr7_3:1087236-1087255 Msa1088090:three_prime_UTR 20.0%
!! GCTAAGAATTTCAAAATATT+TGG - chr7_3:1088212-1088231 Msa1088090:intron 20.0%
!! ATTAAAGATCCAATTATCAT+GGG - chr7_3:1088304-1088323 Msa1088090:intron 20.0%
!! AGTATTTATACTAACATAGT+TGG - chr7_3:1088498-1088517 Msa1088090:CDS 20.0%
!! AAAACGATATGAATATTTCA+TGG + chr7_3:1088578-1088597 None:intergenic 20.0%
! ATTCAATACTATACACGAAT+TGG - chr7_3:1086417-1086436 Msa1088090:three_prime_UTR 25.0%
!! TTGAGGAAATGTCAAATTTT+AGG - chr7_3:1086480-1086499 Msa1088090:three_prime_UTR 25.0%
! ATCAACAACAATATTAGAGT+TGG + chr7_3:1086522-1086541 None:intergenic 25.0%
! ATTTCAACTACTAATTAAGC+TGG + chr7_3:1086850-1086869 None:intergenic 25.0%
!!! CAATTAATTTTTTGTTGACG+AGG - chr7_3:1087113-1087132 Msa1088090:three_prime_UTR 25.0%
! AATTGTAAACGATGAATTTG+TGG + chr7_3:1087466-1087485 None:intergenic 25.0%
! ACAAATTCATCGTTTACAAT+TGG - chr7_3:1087465-1087484 Msa1088090:three_prime_UTR 25.0%
! CAAACCTTAACAAAATGTTT+AGG - chr7_3:1088084-1088103 Msa1088090:intron 25.0%
! GATTAAAGATCCAATTATCA+TGG - chr7_3:1088303-1088322 Msa1088090:intron 25.0%
!!! ACCTTTTTTGCAAATTTCTT+TGG - chr7_3:1088403-1088422 Msa1088090:intron 25.0%
! ACCAAAGAAATTTGCAAAAA+AGG + chr7_3:1088407-1088426 None:intergenic 25.0%
!! TTTTGCAAATTTCTTTGGTA+AGG - chr7_3:1088408-1088427 Msa1088090:CDS 25.0%
! TATACAAATCTTAGACTTGA+TGG - chr7_3:1088551-1088570 Msa1088090:CDS 25.0%
! TAAGTTGGATAAAGTGGTTT+CGG - chr7_3:1086277-1086296 Msa1088090:three_prime_UTR 30.0%
TATCAACAATACTAGAGTTG+CGG + chr7_3:1086460-1086479 None:intergenic 30.0%
CTCTAGTATTGTTGATATTG+AGG - chr7_3:1086463-1086482 Msa1088090:three_prime_UTR 30.0%
TCAACTTTATCGTTCACAAT+TGG + chr7_3:1086578-1086597 None:intergenic 30.0%
ATTGTGAACGATAAAGTTGA+TGG - chr7_3:1086578-1086597 Msa1088090:three_prime_UTR 30.0%
! AGTTGAAAAGTGTAATGCAA+TGG - chr7_3:1086640-1086659 Msa1088090:three_prime_UTR 30.0%
ATTGATGTTGAAGATCAACA+AGG - chr7_3:1086744-1086763 Msa1088090:three_prime_UTR 30.0%
TGATCAACTGTATTAACAAC+AGG + chr7_3:1087174-1087193 None:intergenic 30.0%
ATGACTTCAAAATGCAAACT+GGG - chr7_3:1087406-1087425 Msa1088090:three_prime_UTR 30.0%
! TGTTTTTCCTGAGAATAGAT+TGG - chr7_3:1087545-1087564 Msa1088090:three_prime_UTR 30.0%
!!! TTTTTCTGGTTTTTCAGCAA+TGG + chr7_3:1087903-1087922 None:intergenic 30.0%
ATTGCTGAAAAACCAGAAAA+AGG - chr7_3:1087902-1087921 Msa1088090:intron 30.0%
!!! CTTTTAGAATTTTATTCCGC+TGG + chr7_3:1087960-1087979 None:intergenic 30.0%
TTCTCATTTATATAACCAGG+AGG + chr7_3:1088008-1088027 None:intergenic 30.0%
GCATTCTCATTTATATAACC+AGG + chr7_3:1088011-1088030 None:intergenic 30.0%
!! TTGTTAAGGTTTGTTTCTGA+GGG + chr7_3:1088077-1088096 None:intergenic 30.0%
!! TTTGTTAAGGTTTGTTTCTG+AGG + chr7_3:1088078-1088097 None:intergenic 30.0%
! AACGCCTAAACATTTTGTTA+AGG + chr7_3:1088091-1088110 None:intergenic 30.0%
! AACAAAATGTTTAGGCGTTT+TGG - chr7_3:1088092-1088111 Msa1088090:intron 30.0%
CATTACTTGCTTTACAAACA+AGG + chr7_3:1088348-1088367 None:intergenic 30.0%
CTTGTTTGTAAAGCAAGTAA+TGG - chr7_3:1088346-1088365 Msa1088090:intron 30.0%
TGTTCTGTAGTTGATCAAAT+GGG - chr7_3:1088447-1088466 Msa1088090:CDS 30.0%
AGTTGATCAAATGGGAAAAT+TGG - chr7_3:1088455-1088474 Msa1088090:CDS 30.0%
CACTTTATCCAACTTAACTG+CGG + chr7_3:1086273-1086292 None:intergenic 35.0%
CTATACACGAATTGGAATGA+CGG - chr7_3:1086425-1086444 Msa1088090:three_prime_UTR 35.0%
ATTGTACATGAAGTTGTCTG+TGG - chr7_3:1086611-1086630 Msa1088090:three_prime_UTR 35.0%
AAGATATCTGCTGATCTCAT+TGG - chr7_3:1086813-1086832 Msa1088090:three_prime_UTR 35.0%
GCTAATGCAATTGTAGAAGA+AGG - chr7_3:1086976-1086995 Msa1088090:three_prime_UTR 35.0%
GTTAATACAGTTGATCAAGC+TGG - chr7_3:1087177-1087196 Msa1088090:three_prime_UTR 35.0%
ATCCAGCAAAGAAGGAAAAA+GGG - chr7_3:1087268-1087287 Msa1088090:three_prime_UTR 35.0%
AATCCAGAGAACCATTCATT+GGG + chr7_3:1087302-1087321 None:intergenic 35.0%
GTCATCATCAAAGTGATCAA+AGG + chr7_3:1087391-1087410 None:intergenic 35.0%
GATGACTTCAAAATGCAAAC+TGG - chr7_3:1087405-1087424 Msa1088090:three_prime_UTR 35.0%
! AATTGGTGACTGTATTCGTA+GGG - chr7_3:1087482-1087501 Msa1088090:three_prime_UTR 35.0%
GAAACATCCAATCTATTCTC+AGG + chr7_3:1087555-1087574 None:intergenic 35.0%
! AGAAAAGTATGTTCTCCATG+GGG + chr7_3:1087666-1087685 None:intergenic 35.0%
! GAGAAAAGTATGTTCTCCAT+GGG + chr7_3:1087667-1087686 None:intergenic 35.0%
! TGAGAAAAGTATGTTCTCCA+TGG + chr7_3:1087668-1087687 None:intergenic 35.0%
! GGAGAACATACTTTTCTCAA+TGG - chr7_3:1087669-1087688 Msa1088090:CDS 35.0%
! CATACTTTTCTCAATGGCAT+AGG - chr7_3:1087675-1087694 Msa1088090:CDS 35.0%
ACGTGAAATCTCTTTCCAAT+CGG + chr7_3:1087742-1087761 None:intergenic 35.0%
TTGGAAAGAGATTTCACGTA+CGG - chr7_3:1087743-1087762 Msa1088090:CDS 35.0%
! ATATAACCAGGAGGTTTGTT+AGG + chr7_3:1087999-1088018 None:intergenic 35.0%
! AAAATGTTTAGGCGTTTTGG+AGG - chr7_3:1088095-1088114 Msa1088090:intron 35.0%
AAGATCCAATTATCATGGGA+AGG - chr7_3:1088308-1088327 Msa1088090:intron 35.0%
! ATGGTGTATCCAACTTTTGA+TGG - chr7_3:1088365-1088384 Msa1088090:intron 35.0%
! TGGTGTATCCAACTTTTGAT+GGG - chr7_3:1088366-1088385 Msa1088090:intron 35.0%
AAAGCTTACCCATCAAAAGT+TGG + chr7_3:1088377-1088396 None:intergenic 35.0%
CTGTTCTGTAGTTGATCAAA+TGG - chr7_3:1088446-1088465 Msa1088090:CDS 35.0%
AGGTATATGTCCACAGTTGT+TGG - chr7_3:1086170-1086189 Msa1088090:three_prime_UTR 40.0%
CAGATAGTTGAGGATTTGAG+TGG - chr7_3:1086227-1086246 Msa1088090:three_prime_UTR 40.0%
!! CGCAGTTAAGTTGGATAAAG+TGG - chr7_3:1086271-1086290 Msa1088090:three_prime_UTR 40.0%
TGGATAAAGTGGTTTCGGAA+AGG - chr7_3:1086282-1086301 Msa1088090:three_prime_UTR 40.0%
GGATAAAGTGGTTTCGGAAA+GGG - chr7_3:1086283-1086302 Msa1088090:three_prime_UTR 40.0%
! GCGAGGTATCAATCAATAGT+TGG - chr7_3:1086308-1086327 Msa1088090:three_prime_UTR 40.0%
ACTGAACAATCTGATGTACG+TGG - chr7_3:1086710-1086729 Msa1088090:three_prime_UTR 40.0%
CTGAACAATCTGATGTACGT+GGG - chr7_3:1086711-1086730 Msa1088090:three_prime_UTR 40.0%
TGAACAATCTGATGTACGTG+GGG - chr7_3:1086712-1086731 Msa1088090:three_prime_UTR 40.0%
AACAATGAATCGAACTGTCG+AGG - chr7_3:1086782-1086801 Msa1088090:three_prime_UTR 40.0%
AATCGAACTGTCGAGGTTAA+AGG - chr7_3:1086789-1086808 Msa1088090:three_prime_UTR 40.0%
! AGTGATGCTTGTAGTTCTGT+TGG - chr7_3:1086910-1086929 Msa1088090:three_prime_UTR 40.0%
AGGATTGCTGGTATCTATTG+AGG - chr7_3:1086936-1086955 Msa1088090:three_prime_UTR 40.0%
GGATTGCTGGTATCTATTGA+GGG - chr7_3:1086937-1086956 Msa1088090:three_prime_UTR 40.0%
GCACTCAAATTACTGAGCAA+GGG - chr7_3:1086998-1087017 Msa1088090:three_prime_UTR 40.0%
TGGAAAGGAAAAACTCAACG+AGG - chr7_3:1087041-1087060 Msa1088090:three_prime_UTR 40.0%
TCAACGAGGAGTCAAATATG+AGG - chr7_3:1087055-1087074 Msa1088090:three_prime_UTR 40.0%
GGAGTCAAATATGAGGCAAA+AGG - chr7_3:1087062-1087081 Msa1088090:three_prime_UTR 40.0%
TGACGAGGAACAAGATTTGT+TGG - chr7_3:1087128-1087147 Msa1088090:three_prime_UTR 40.0%
TACTATGCATCCAGCAAAGA+AGG - chr7_3:1087260-1087279 Msa1088090:three_prime_UTR 40.0%
CATCCAGCAAAGAAGGAAAA+AGG - chr7_3:1087267-1087286 Msa1088090:three_prime_UTR 40.0%
! ATCCCTTTTTCCTTCTTTGC+TGG + chr7_3:1087273-1087292 None:intergenic 40.0%
GAATCCAGAGAACCATTCAT+TGG + chr7_3:1087303-1087322 None:intergenic 40.0%
CACCTGAACATTCCAAGAAA+AGG - chr7_3:1087361-1087380 Msa1088090:three_prime_UTR 40.0%
! CTCCTTTTCTTGGAATGTTC+AGG + chr7_3:1087366-1087385 None:intergenic 40.0%
!!! ATCAAAGGTGCTCCTTTTCT+TGG + chr7_3:1087376-1087395 None:intergenic 40.0%
! CAATTGGTGACTGTATTCGT+AGG - chr7_3:1087481-1087500 Msa1088090:three_prime_UTR 40.0%
CAGAAGACAGATGTAGACAT+TGG - chr7_3:1087522-1087541 Msa1088090:three_prime_UTR 40.0%
! TCGTCATGCTCAACAGTTTT+AGG + chr7_3:1087579-1087598 None:intergenic 40.0%
ATTTCACGTACGGATGAACT+TGG - chr7_3:1087753-1087772 Msa1088090:CDS 40.0%
ACAAATCCAGTTCCAGCTAT+GGG + chr7_3:1087801-1087820 None:intergenic 40.0%
AACAAATCCAGTTCCAGCTA+TGG + chr7_3:1087802-1087821 None:intergenic 40.0%
! TGACTTGCATTGTACAGACT+GGG - chr7_3:1087839-1087858 Msa1088090:intron 40.0%
! CAAGTTGTTCGTCCTTTTTC+TGG + chr7_3:1087917-1087936 None:intergenic 40.0%
!!! GAATTTTATTCCGCTGGCTT+TGG + chr7_3:1087954-1087973 None:intergenic 40.0%
AAGTTCATAACAAGCTCAGC+AGG + chr7_3:1088035-1088054 None:intergenic 40.0%
TGAGGGAACAGATTTGAACT+CGG + chr7_3:1088060-1088079 None:intergenic 40.0%
TCTTAAAGACCACTCTTGCA+CGG + chr7_3:1088160-1088179 None:intergenic 40.0%
TACGGTTTCACCAACAACTG+TGG + chr7_3:1086183-1086202 None:intergenic 45.0%
ACATTCCACAGACTCGTCTA+CGG + chr7_3:1086201-1086220 None:intergenic 45.0%
ATGTGGTGGTCAGATAGTTG+AGG - chr7_3:1086217-1086236 Msa1088090:three_prime_UTR 45.0%
AGGATTTGAGTGGAGAAGCT+GGG - chr7_3:1086237-1086256 Msa1088090:three_prime_UTR 45.0%
TGAGAATGCCGCAGTTAAGT+TGG - chr7_3:1086262-1086281 Msa1088090:three_prime_UTR 45.0%
!! CAATAGTTGGCACTGACTCT+TGG - chr7_3:1086321-1086340 Msa1088090:three_prime_UTR 45.0%
GGAGCAAGTAATAGCTGACA+AGG - chr7_3:1086661-1086680 Msa1088090:three_prime_UTR 45.0%
ATAGCTGACAAGGATGTGAG+TGG - chr7_3:1086671-1086690 Msa1088090:three_prime_UTR 45.0%
GAACAATCTGATGTACGTGG+GGG - chr7_3:1086713-1086732 Msa1088090:three_prime_UTR 45.0%
AACAATCTGATGTACGTGGG+GGG - chr7_3:1086714-1086733 Msa1088090:three_prime_UTR 45.0%
GGCACTCAAATTACTGAGCA+AGG - chr7_3:1086997-1087016 Msa1088090:three_prime_UTR 45.0%
TTCCATCATGCAACAGTACG+TGG + chr7_3:1087026-1087045 None:intergenic 45.0%
! CGTACTGTTGCATGATGGAA+AGG - chr7_3:1087026-1087045 Msa1088090:three_prime_UTR 45.0%
! AGAGCAAGAATGCGTTGACA+AGG - chr7_3:1087089-1087108 Msa1088090:three_prime_UTR 45.0%
AGACCCAATGAATGGTTCTC+TGG - chr7_3:1087296-1087315 Msa1088090:three_prime_UTR 45.0%
ATTCTCCAGACGGTGATTGT+TGG - chr7_3:1087319-1087338 Msa1088090:three_prime_UTR 45.0%
TTGTTGGACTCCAGTTCATC+TGG - chr7_3:1087335-1087354 Msa1088090:three_prime_UTR 45.0%
TCAGGTGAAACCAGATGAAC+TGG + chr7_3:1087348-1087367 None:intergenic 45.0%
GCTATCTTCACTTCAGTGTG+TGG - chr7_3:1087632-1087651 Msa1088090:three_prime_UTR 45.0%
AAGAAGAAACCACCCATAGC+TGG - chr7_3:1087786-1087805 Msa1088090:CDS 45.0%
! GTGACTTGCATTGTACAGAC+TGG - chr7_3:1087838-1087857 Msa1088090:intron 45.0%
ACAGACTGGGTCATTGACAA+TGG - chr7_3:1087852-1087871 Msa1088090:intron 45.0%
TTCAGCAATGGTTGTTGCAC+TGG + chr7_3:1087891-1087910 None:intergenic 45.0%
!!! TTTTATTCCGCTGGCTTTGG+TGG + chr7_3:1087951-1087970 None:intergenic 45.0%
!!! TAGGCGTTTTGGAGGACTAA+AGG - chr7_3:1088103-1088122 Msa1088090:intron 45.0%
CGCTTGGAGTGTAATTAAGC+TGG + chr7_3:1088256-1088275 None:intergenic 45.0%
!! CTCAAAGCTTTGAACACGCT+TGG + chr7_3:1088272-1088291 None:intergenic 45.0%
AGCAGCCTTCCCATGATAAT+TGG + chr7_3:1088316-1088335 None:intergenic 45.0%
TGAAACCGTAGACGAGTCTG+TGG - chr7_3:1086193-1086212 Msa1088090:three_prime_UTR 50.0%
GTAGACGAGTCTGTGGAATG+TGG - chr7_3:1086200-1086219 Msa1088090:three_prime_UTR 50.0%
GAGGATTTGAGTGGAGAAGC+TGG - chr7_3:1086236-1086255 Msa1088090:three_prime_UTR 50.0%
!! TGGCACTGACTCTTGGACTA+TGG - chr7_3:1086328-1086347 Msa1088090:three_prime_UTR 50.0%
!! CACTGACTCTTGGACTATGG+AGG - chr7_3:1086331-1086350 Msa1088090:three_prime_UTR 50.0%
TCAGCAAACAGTGATGTCCC+CGG + chr7_3:1086380-1086399 None:intergenic 50.0%
ACAATCTGATGTACGTGGGG+GGG - chr7_3:1086715-1086734 Msa1088090:three_prime_UTR 50.0%
! GCTTGTAGTTCTGTTGGTGC+AGG - chr7_3:1086916-1086935 Msa1088090:three_prime_UTR 50.0%
TTCTGTTGGTGCAGGATTGC+TGG - chr7_3:1086924-1086943 Msa1088090:three_prime_UTR 50.0%
AGCCACGTACTGTTGCATGA+TGG - chr7_3:1087021-1087040 Msa1088090:three_prime_UTR 50.0%
GGGATGTCAGACCCAATGAA+TGG - chr7_3:1087288-1087307 Msa1088090:three_prime_UTR 50.0%
GGTTCTCTGGATTCTCCAGA+CGG - chr7_3:1087309-1087328 Msa1088090:three_prime_UTR 50.0%
TGTGTGGCACAAAAACCCCA+TGG - chr7_3:1087648-1087667 Msa1088090:exon 50.0%
!! CTGTAATTGCGAGTGCCGAT+TGG - chr7_3:1087724-1087743 Msa1088090:CDS 50.0%
GGGTGGTTTCTTCTTCCTCA+TGG + chr7_3:1087781-1087800 None:intergenic 50.0%
AAACCACCCATAGCTGGAAC+TGG - chr7_3:1087792-1087811 Msa1088090:CDS 50.0%
AATCCAGTTCCAGCTATGGG+TGG + chr7_3:1087798-1087817 None:intergenic 50.0%
GAGACTCCTAACAAACCTCC+TGG - chr7_3:1087990-1088009 Msa1088090:intron 50.0%
AGTAAACAGCCGTGCAAGAG+TGG - chr7_3:1088148-1088167 Msa1088090:intron 50.0%
! TAAGAAGCGTGCAGATGCAG+AGG - chr7_3:1088175-1088194 Msa1088090:intron 50.0%
GACGAGTCTGTGGAATGTGG+TGG - chr7_3:1086203-1086222 Msa1088090:three_prime_UTR 55.0%
TGGTTTCGGAAAGGGAAGCG+AGG - chr7_3:1086291-1086310 Msa1088090:three_prime_UTR 55.0%
TGGACTATGGAGGATGCTGC+TGG - chr7_3:1086341-1086360 Msa1088090:three_prime_UTR 55.0%
GGACTATGGAGGATGCTGCT+GGG - chr7_3:1086342-1086361 Msa1088090:three_prime_UTR 55.0%
GACTATGGAGGATGCTGCTG+GGG - chr7_3:1086343-1086362 Msa1088090:three_prime_UTR 55.0%
CAGCAAACAGTGATGTCCCC+GGG + chr7_3:1086379-1086398 None:intergenic 55.0%
GCTGGTATCTATTGAGGGCG+AGG - chr7_3:1086942-1086961 Msa1088090:three_prime_UTR 55.0%
GGAGTCCAACAATCACCGTC+TGG + chr7_3:1087327-1087346 None:intergenic 55.0%
CGGATGAACTTGGCACCATG+AGG - chr7_3:1087763-1087782 Msa1088090:CDS 55.0%
TGCTAAGCCACCAAAGCCAG+CGG - chr7_3:1087941-1087960 Msa1088090:intron 55.0%
GCAGATGCAGAGGTAGCTCT+AGG - chr7_3:1088185-1088204 Msa1088090:intron 55.0%
TCTGATGTACGTGGGGGGGA+TGG - chr7_3:1086719-1086738 Msa1088090:three_prime_UTR 60.0%
TGATGTCCCCGGGTGACCTG+CGG + chr7_3:1086369-1086388 None:intergenic 65.0%
GAGGATGCTGCTGGGGCCGC+AGG - chr7_3:1086350-1086369 Msa1088090:three_prime_UTR 75.0%
TGCTGGGGCCGCAGGTCACC+CGG - chr7_3:1086358-1086377 Msa1088090:three_prime_UTR 75.0%
! GCTGGGGCCGCAGGTCACCC+GGG - chr7_3:1086359-1086378 Msa1088090:three_prime_UTR 80.0%
! CTGGGGCCGCAGGTCACCCG+GGG - chr7_3:1086360-1086379 Msa1088090:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 1086152 1088626 1086152 ID=Msa1088090;Name=Msa1088090
chr7_3 mRNA 1086152 1088626 1086152 ID=Msa1088090-mRNA-1;Parent=Msa1088090;Name=Msa1088090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0.5|1|1|1|2|1507|133
chr7_3 exon 1086152 1087840 1086152 ID=Msa1088090-mRNA-1:exon:445;Parent=Msa1088090-mRNA-1
chr7_3 exon 1088407 1088626 1088407 ID=Msa1088090-mRNA-1:exon:444;Parent=Msa1088090-mRNA-1
chr7_3 CDS 1088407 1088626 1088407 ID=Msa1088090-mRNA-1:cds;Parent=Msa1088090-mRNA-1
chr7_3 CDS 1087659 1087840 1087659 ID=Msa1088090-mRNA-1:cds;Parent=Msa1088090-mRNA-1
chr7_3 three_prime_UTR 1086152 1087658 1086152 ID=Msa1088090-mRNA-1:three_prime_utr;Parent=Msa1088090-mRNA-1
Gene Sequence

>Msa1088090

ATGGAAGAAGTAGAAAAGAGGTATATGTCCACAGTTGTTGGTGAAACCGTAGACGAGTCTGTGGAATGTGGTGGTCAGATAGTTGAGGATTTGAGTGGAGAAGCTGGGATTGAGAATGCCGCAGTTAAGTTGGATAAAGTGGTTTCGGAAAGGGAAGCGAGGTATCAATCAATAGTTGGCACTGACTCTTGGACTATGGAGGATGCTGCTGGGGCCGCAGGATTGCTGGTATCTATTGAGGGCGAGGAAAATTTTCATGCTAATGCAATTGTAGAAGAAGGCACTCAAATTACTGAGCAAGGGAGCCACGTACTGTTGCATGATGGAAAGGAAAAACTCAACGAGGAGTCAAATATGAGGCAAAAGGTTGAAGAGCAAGAATGCGTTGACAAGGACAATTAA
Protein sequence

>Msa1088090

MEEVEKRYMSTVVGETVDESVECGGQIVEDLSGEAGIENAAVKLDKVVSEREARYQSIVGTDSWTMEDAAGAAGLLVSIEGEENFHANAIVEEGTQITEQGSHVLLHDGKEKLNEESNMRQKVEEQECVDKDN*