AlfalfaGEDB | Msa0196130

M. sativa cultivar zhongmu-4 / Msa0196130

KEGG: K10604
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF13920.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196130	XP_013462733.1	97.150	386	5	3	1	380	1	386	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196130	sp\|Q84ME1\|LUL3_ARATH	59.283	307	97	8	91	379	79	375	1.70e-116	346

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196130	A0A072V5Z5	97.150	386	5	3	1	380	1	386	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0196130	0.800418	1.455038e-48	-8.615850e-47
Msa0000550	Msa0196130	0.822553	2.227909e-53	-8.615850e-47
Msa0001590	Msa0196130	-0.801007	1.103097e-48	-8.615850e-47
Msa0001950	Msa0196130	-0.801886	7.286140e-49	-8.615850e-47
Msa0008340	Msa0196130	-0.829558	4.812731e-55	-8.615850e-47
Msa0008850	Msa0196130	-0.800138	1.658747e-48	-8.615850e-47
Msa0011720	Msa0196130	-0.827094	1.891478e-54	-8.615850e-47
Msa0011850	Msa0196130	-0.826816	2.204177e-54	-8.615850e-47
Msa0013050	Msa0196130	0.816918	4.316892e-52	-8.615850e-47
Msa0014920	Msa0196130	-0.816948	4.250756e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196130	MtrunA17_Chr2g0287731	97.150	386	5	3	1	380	1	386	0.0	754
Msa0196130	MtrunA17_Chr4g0065661	72.868	258	65	3	124	379	103	357	1.15e-136	394
Msa0196130	MtrunA17_Chr1g0181351	43.567	342	163	7	40	375	25	342	1.46e-84	261
Msa0196130	MtrunA17_Chr7g0264071	47.656	256	104	4	124	379	103	328	4.95e-78	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196130	AT5G19080.1	59.283	307	97	8	91	379	79	375	1.73e-117	346
Msa0196130	AT3G06140.1	53.693	352	132	8	34	379	30	356	4.11e-106	317
Msa0196130	AT3G09770.1	49.455	275	128	5	106	375	101	369	1.39e-86	268
Msa0196130	AT3G53410.1	46.290	283	140	5	98	379	26	297	9.89e-81	249
Msa0196130	AT5G03200.1	48.289	263	120	4	111	373	87	333	1.37e-74	235
Msa0196130	AT3G09770.2	46.721	244	119	5	106	344	101	338	4.64e-66	213

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Find 167 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGTTAATGTTCATA+AGG	0.399525	2_1:+13170638	Msa0196130:CDS
AAACAGAAAAGAGTACGACT+CGG	0.729013	2_1:-13170076	None:intergenic
AAACGGTGCAAATAACAAGA+TGG	0.554009	2_1:-13170181	None:intergenic
AAAGAAACAAGGTAATGATC+AGG	0.424687	2_1:-13170693	None:intergenic
AAATAACAAGATGGGAGTGG+TGG	0.701409	2_1:-13170172	None:intergenic
AAATATAATGACACCTGGCT+TGG	0.510867	2_1:+13177147	Msa0196130:three_prime_UTR
AACAACAACCGCAATATGCA+TGG	0.563639	2_1:+13170526	Msa0196130:CDS
AACATGTTTGGAAACTCCCT+CGG	0.570776	2_1:+13175638	Msa0196130:CDS
AACCACTGCAAAAGTGTACA+TGG	0.563738	2_1:-13177016	None:intergenic
AACGGTGCAAATAACAAGAT+GGG	0.566574	2_1:-13170180	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATAAGGTTGAAGAAGAAA+CGG	-	chr2_1:13170201-13170220	None:intergenic	30.0%
TGTTCTGTTGAGTAATAGTA+AGG	-	chr2_1:13170324-13170343	None:intergenic	30.0%
AGGATGATATTGAATACGAT+TGG	-	chr2_1:13170487-13170506	None:intergenic	30.0%
AAGAAACAAGGTAATGATCA+GGG	-	chr2_1:13170695-13170714	None:intergenic	30.0%
AAAGAAACAAGGTAATGATC+AGG	-	chr2_1:13170696-13170715	None:intergenic	30.0%
CATCGAAAACAAAAGAAACA+AGG	-	chr2_1:13170707-13170726	None:intergenic	30.0%
AAGGTAAAGGGATTTATGTA+TGG	+	chr2_1:13170921-13170940	Msa0196130:intron	30.0%
GTTGTAATCAATTATACACC+TGG	+	chr2_1:13171058-13171077	Msa0196130:intron	30.0%
GATCTTGAGTTAATTTCTTG+AGG	+	chr2_1:13171386-13171405	Msa0196130:intron	30.0%
AGAGTTGTTAACTAATTTGG+TGG	+	chr2_1:13171452-13171471	Msa0196130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	13170068	13177216	13170068	ID=Msa0196130;Name=Msa0196130
chr2_1	mRNA	13170068	13177216	13170068	ID=Msa0196130-mRNA-1;Parent=Msa0196130;Name=Msa0196130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=160\|1\|1\|1\|1\|1\|3\|389\|380
chr2_1	exon	13170068	13170742	13170068	ID=Msa0196130-mRNA-1:exon:5704;Parent=Msa0196130-mRNA-1
chr2_1	exon	13175419	13175932	13175419	ID=Msa0196130-mRNA-1:exon:5705;Parent=Msa0196130-mRNA-1
chr2_1	exon	13176714	13177216	13176714	ID=Msa0196130-mRNA-1:exon:5706;Parent=Msa0196130-mRNA-1
chr2_1	five_prime_UTR	13170068	13170227	13170068	ID=Msa0196130-mRNA-1:five_prime_utr;Parent=Msa0196130-mRNA-1
chr2_1	CDS	13170228	13170742	13170228	ID=Msa0196130-mRNA-1:cds;Parent=Msa0196130-mRNA-1
chr2_1	CDS	13175419	13175932	13175419	ID=Msa0196130-mRNA-1:cds;Parent=Msa0196130-mRNA-1
chr2_1	CDS	13176714	13176827	13176714	ID=Msa0196130-mRNA-1:cds;Parent=Msa0196130-mRNA-1
chr2_1	three_prime_UTR	13176828	13177216	13176828	ID=Msa0196130-mRNA-1:three_prime_utr;Parent=Msa0196130-mRNA-1

Gene Sequence

>Msa0196130

ATGGGTATTACGTGGAGTAACAGAAGAAGAAACAATTTCATTCAAAACCCACCTCCACAACCACCACAACTTCCACCACCACCGCCACCACCACCTTACTATTACTCAACAGAACAACACCCTCCACCTCCACCACCACCTCAACAAAGTTACTACTATCCCCCCTCAACTACTCCTTACACCCCCCAACCTCAACCACAGCCCCATTCATTCTACTTCTCCAACCCTAACAATAACTATCCTCCCAATTCTACTACCAATCGTATTCAATATCATCCTTCATATCATCTCAATCAACAACAACAACCGCAATATGCATGGCCTCCACCTCCTCCCCCTTTTTACGCTCCTGCTGCTGCTTCTTCCACTCCACCTCCTTATGTTGATCATCAAACTGCTAAAAAGATTAGAAACAATGTTAATGTTCATAAGGATACGCTTCGCCTTGAGATTGATCAGCTTAACCCTGATCATTACCTTGTTTCTTTTGTTTTCGATGCCGTCTTTGATGGAAGCATTACTGTCTTTTACTTTGCGAAGGAAGAAGATAAATGTAGGTTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTAAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTAGATGATCTTTCAAAGCCTTCACCCGGGGAAGATGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCGGAAAACGAAACTCCTGATGATTCCGTGCTAGATGCATCCCCTCACATGCAAATTACTCAAGCTGTCTTGGAGAAAAGTAATGGTGGTGGTGCTTTCCAGATAAAAGTAGTTAGACAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTAAGAGAACTATATGGAATAGGAAGCTCAGAAGCTGCAGGCTTTGATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGTGAGTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCAATTGAGGAACTTATGGAGATCAGGGTGAAGAGTAGCGATCCATGA

Protein sequence

>Msa0196130

MGITWSNRRRNNFIQNPPPQPPQLPPPPPPPPYYYSTEQHPPPPPPPQQSYYYPPSTTPYTPQPQPQPHSFYFSNPNNNYPPNSTTNRIQYHPSYHLNQQQQPQYAWPPPPPPFYAPAAASSTPPPYVDHQTAKKIRNNVNVHKDTLRLEIDQLNPDHYLVSFVFDAVFDGSITVFYFAKEEDKCRFVPLFPDAFVPVKVPFKKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSENETPDDSVLDASPHMQITQAVLEKSNGGGAFQIKVVRQILWIDGVRYELRELYGIGSSEAAGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIRVKSSDP*