AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0063580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063580 MtrunA17_Chr1g0165441 96.509 401 11 1 1 401 1 398 0.0 790
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063580 AT3G28760.2 65.974 385 117 2 18 400 71 443 0.0 523
Msa0063580 AT3G28760.1 65.974 385 117 2 18 400 49 421 0.0 522

Find 84 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAGTGAGAAGGATATTT+TGG 0.180793 1_2:-24179455 Msa0063580:CDS
GGAAAGGAGCAGCTTATATT+TGG 0.262534 1_2:-24175302 Msa0063580:three_prime_UTR
TTTGGATGCACAAAATAAAA+AGG 0.273689 1_2:-24179437 Msa0063580:CDS
GGCAAAAGATGCTTCACTTT+AGG 0.292968 1_2:-24175178 Msa0063580:three_prime_UTR
AATCAAAGAAAGTGTGGATA+TGG 0.301157 1_2:-24180684 Msa0063580:CDS
CACGCCTACATTGCTGTTCC+AGG 0.323371 1_2:-24177444 Msa0063580:CDS
GCAAGATGAGGAAGATTAGA+TGG 0.324251 1_2:+24180601 None:intergenic
AAGACTTGGTCTGATATCTT+TGG 0.346536 1_2:+24175276 None:intergenic
CATTGCTTTCTTCTGTTCTT+CGG 0.350670 1_2:+24178168 None:intergenic
AGTGATTGTGGTTGATCAAC+AGG 0.351036 1_2:-24177379 Msa0063580:CDS
TTCTTCTTCTTGGACACCAT+TGG 0.354356 1_2:-24180725 Msa0063580:CDS
ATGTCTTTACTGTCGCAAAT+TGG 0.354779 1_2:-24180832 Msa0063580:CDS
TTCCTCATCTTGCCAATGAT+TGG 0.355275 1_2:-24180591 Msa0063580:CDS
AGATGGCAAATACAGTCTTT+TGG 0.378386 1_2:+24178473 None:intergenic
TGAGCCTATTCTTGAGCTTA+AGG 0.383726 1_2:-24178273 Msa0063580:intron
ATGTATGTAAACAGATATAA+TGG 0.383937 1_2:-24175138 Msa0063580:three_prime_UTR
AAATTCTTGAATCTCTATTC+CGG 0.391166 1_2:+24175458 None:intergenic
CAAATTCAAGTTGCTGGAAT+GGG 0.397178 1_2:-24178116 Msa0063580:CDS
GCACTTGAACATGGCTTAGA+TGG 0.408508 1_2:-24178320 Msa0063580:CDS
TGGACACCATTGGAGGATAC+TGG 0.409798 1_2:-24180715 Msa0063580:CDS
AATTTGTGTCACAGTGGCTT+TGG 0.410779 1_2:+24178133 None:intergenic
GTGACACAAATTCAAGTTGC+TGG 0.412213 1_2:-24178122 Msa0063580:CDS
TTTGCCTCCACAAGGATTAG+TGG 0.415111 1_2:+24177309 None:intergenic
TCGTAGTTAATTTACTTGAT+TGG 0.428062 1_2:-24179339 Msa0063580:CDS
AGTTAATTTACTTGATTGGC+AGG 0.443340 1_2:-24179335 Msa0063580:intron
CGGCAAAGAATTGCAATTGT+TGG 0.452724 1_2:-24177354 Msa0063580:CDS
ACAAATTGAATTACCTTGTA+CGG 0.452777 1_2:+24175628 None:intergenic
TCTTGTTCATTCAGAATGCT+TGG 0.454670 1_2:-24177938 Msa0063580:CDS
AAACGTGTGTTGGAAGTAGA+AGG 0.460018 1_2:+24180787 None:intergenic
CTCAAGAAATGTCTGAGCTT+CGG 0.461769 1_2:+24178438 None:intergenic
CCAGTGACATCACTAAAAGT+TGG 0.464939 1_2:-24175522 Msa0063580:CDS
TACCTGTCAGAATTAAAATC+AGG 0.467479 1_2:-24177408 Msa0063580:CDS
CAAAATACATGACCAATCAT+TGG 0.467598 1_2:+24180579 None:intergenic
ACAGCAATGTAGGCGTGAAC+TGG 0.479131 1_2:+24177450 None:intergenic
TTCTTCTTGGACACCATTGG+AGG 0.485849 1_2:-24180722 Msa0063580:CDS
GCTTTAGTTTGTCCCGTACA+AGG 0.485966 1_2:-24175641 Msa0063580:intron
ACAAATTCAAGTTGCTGGAA+TGG 0.489970 1_2:-24178117 Msa0063580:CDS
TTGTTACCAGTATCCTCCAA+TGG 0.499727 1_2:+24180709 None:intergenic
CAAATTGAATTACCTTGTAC+GGG 0.507264 1_2:+24175629 None:intergenic
TTTGAGGCGCAAACGTGTGT+TGG 0.510108 1_2:+24180777 None:intergenic
AGGTAGGATGTTCTACCGCC+TGG 0.514003 1_2:+24177426 None:intergenic
TAGGTTGGATCCTTTGCTAG+AGG 0.519842 1_2:-24177967 Msa0063580:CDS
CTAAGTCGTTCTAGTTCCTC+CGG 0.524065 1_2:+24179388 None:intergenic
CTCTGCAGTCTTATGAGACC+TGG 0.525874 1_2:-24178074 Msa0063580:CDS
ACTAATCCTTGTGGAGGCAA+AGG 0.534041 1_2:-24177307 Msa0063580:intron
GTAAACAGATATAATGGAGT+TGG 0.537288 1_2:-24175132 Msa0063580:three_prime_UTR
CTTACCGCATTCACCCGAAA+AGG 0.538390 1_2:+24177892 None:intergenic
GGAATTGTGTAAAGTCCAGT+TGG 0.544052 1_2:-24175199 Msa0063580:three_prime_UTR
CAAGATGAGGAAGATTAGAT+GGG 0.546175 1_2:+24180602 None:intergenic
ATGACTGCAGCCGTTGAAAG+AGG 0.551230 1_2:-24180643 Msa0063580:CDS
ATCAGGAAAAGAAGTGATTG+TGG 0.556374 1_2:-24177391 Msa0063580:CDS
CTGCAGCCGTTGAAAGAGGA+TGG 0.557200 1_2:-24180639 Msa0063580:CDS
CAAGGAGGGGCTCGACATAC+CGG 0.557488 1_2:-24175477 Msa0063580:CDS
AAGAAATAATCCTCTAGCAA+AGG 0.559960 1_2:+24177957 None:intergenic
TTGTAGAAGAACAAGGTTTG+AGG 0.561848 1_2:+24180761 None:intergenic
CACAAACCTTTGCCTCCACA+AGG 0.562034 1_2:+24177301 None:intergenic
ATCACCTTAAGCTCAAGAAT+AGG 0.564561 1_2:+24178269 None:intergenic
TTCGGATGCATTATCAGAGA+TGG 0.570257 1_2:+24178456 None:intergenic
AAATTCAAGTTGCTGGAATG+GGG 0.571305 1_2:-24178115 Msa0063580:CDS
GAAGGCATTGTAGAAGAACA+AGG 0.582626 1_2:+24180754 None:intergenic
TTCTATTGAGAATACAAGGA+GGG 0.587874 1_2:-24175491 Msa0063580:CDS
AGTATTCCATCCTCTTTCAA+CGG 0.589963 1_2:+24180633 None:intergenic
GTCTACTTTCTATCTTTACA+CGG 0.590915 1_2:+24177331 None:intergenic
CGAAGCTCAGACATTTCTTG+AGG 0.591185 1_2:-24178437 Msa0063580:intron
ATGAAAATAATGCAAAGACT+TGG 0.605754 1_2:+24175262 None:intergenic
GACCAATCATTGGCAAGATG+AGG 0.606847 1_2:+24180589 None:intergenic
GAAGTTCTATTGAGAATACA+AGG 0.609646 1_2:-24175495 Msa0063580:CDS
ACCGCCTGGAACAGCAATGT+AGG 0.611914 1_2:+24177440 None:intergenic
TCTATTGAGAATACAAGGAG+GGG 0.613333 1_2:-24175490 Msa0063580:CDS
AAGTAGACCACTAATCCTTG+TGG 0.623475 1_2:-24177316 Msa0063580:CDS
AATTCAAGTTGCTGGAATGG+GGG 0.626295 1_2:-24178114 Msa0063580:CDS
GTGTTGGAAGTAGAAGGTGG+TGG 0.630075 1_2:+24180793 None:intergenic
AAGAGGACAGATGACTGCAA+TGG 0.637867 1_2:+24179480 None:intergenic
TTGTGGTTGATCAACAGGGT+CGG 0.642420 1_2:-24177374 Msa0063580:CDS
AGTCTTATGAGACCTGGTGA+AGG 0.644139 1_2:-24178068 Msa0063580:CDS
CATACGAGAAGTCCTTCACC+AGG 0.653315 1_2:+24178056 None:intergenic
GATATGGACAAAGAACAAGC+AGG 0.656378 1_2:-24180668 Msa0063580:CDS
GTGATTGTGGTTGATCAACA+GGG 0.670264 1_2:-24177378 Msa0063580:CDS
TAGACCACTAATCCTTGTGG+AGG 0.673279 1_2:-24177313 Msa0063580:CDS
GCCTACATTGCTGTTCCAGG+CGG 0.679259 1_2:-24177441 Msa0063580:CDS
AACTTGAATTTGTGTCACAG+TGG 0.683036 1_2:+24178127 None:intergenic
GTTCTATTGAGAATACAAGG+AGG 0.709797 1_2:-24175492 Msa0063580:CDS
ACTAGAACGACTTAGACCTG+AGG 0.735230 1_2:-24179380 Msa0063580:CDS
CGTGTGTTGGAAGTAGAAGG+TGG 0.751214 1_2:+24180790 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAGTCTTTAAAATTTT+AGG - chr1_2:24176012-24176031 Msa0063580:intron 10.0%
!!! TTAGTTTTTAAAAATGTTAA+TGG - chr1_2:24179493-24179512 Msa0063580:intron 10.0%
!! TGTTAAAATAGTTAAAAATA+TGG + chr1_2:24179820-24179839 None:intergenic 10.0%
!!! GATTTAAAATATAATGGAAA+GGG + chr1_2:24175441-24175460 None:intergenic 15.0%
!!! CAATTGGATTTAAAATATAA+TGG + chr1_2:24175447-24175466 None:intergenic 15.0%
!! ATTAAAATGAAAAACAAAAG+GGG + chr1_2:24176180-24176199 None:intergenic 15.0%
!! GATTAAAATGAAAAACAAAA+GGG + chr1_2:24176181-24176200 None:intergenic 15.0%
!! AGATTAAAATGAAAAACAAA+AGG + chr1_2:24176182-24176201 None:intergenic 15.0%
!!! TTTTATGATATTTGGAATTT+TGG - chr1_2:24176457-24176476 Msa0063580:intron 15.0%
!! TACATTATTGAAATTGAAAA+TGG + chr1_2:24177403-24177422 None:intergenic 15.0%
!! AACTTAAAAAAACTTATTCA+AGG - chr1_2:24178131-24178150 Msa0063580:CDS 15.0%
!!! AAATATTTTCCAATAACTAA+TGG + chr1_2:24178704-24178723 None:intergenic 15.0%
!!! CAAAAAAACAAATTCTAAAA+AGG + chr1_2:24178755-24178774 None:intergenic 15.0%
!!! CTTTTGCTTATATTTTATAA+TGG + chr1_2:24179159-24179178 None:intergenic 15.0%
!! AAACGATGTAAAAAATTATA+CGG + chr1_2:24179625-24179644 None:intergenic 15.0%
!! AATTATCTGAATTTGAAAAT+AGG - chr1_2:24179952-24179971 Msa0063580:intron 15.0%
!!! GGATTTAAAATATAATGGAA+AGG + chr1_2:24175442-24175461 None:intergenic 20.0%
!! TAATGTGATACTAAAACAAT+TGG + chr1_2:24175463-24175482 None:intergenic 20.0%
!! AATGGAAACAAATAACAAAA+GGG + chr1_2:24175486-24175505 None:intergenic 20.0%
!! AAATGGAAACAAATAACAAA+AGG + chr1_2:24175487-24175506 None:intergenic 20.0%
!! GATGAAATTTAAACACAAAA+TGG + chr1_2:24175504-24175523 None:intergenic 20.0%
!! AAATTAACCAAATACTTAAG+TGG - chr1_2:24176058-24176077 Msa0063580:intron 20.0%
!!! TTAATTTGTTGATACATGAT+TGG - chr1_2:24176278-24176297 Msa0063580:intron 20.0%
!!! ACTTTTATTTTAATGAACTC+CGG + chr1_2:24176378-24176397 None:intergenic 20.0%
!! TGAGGTATATAAATATTAGT+AGG - chr1_2:24177557-24177576 Msa0063580:intron 20.0%
!! GAGGTATATAAATATTAGTA+GGG - chr1_2:24177558-24177577 Msa0063580:intron 20.0%
!! AGGTATATAAATATTAGTAG+GGG - chr1_2:24177559-24177578 Msa0063580:intron 20.0%
!! ATTATAAATAATGAGACAGA+GGG + chr1_2:24178960-24178979 None:intergenic 20.0%
!! TATTATAAATAATGAGACAG+AGG + chr1_2:24178961-24178980 None:intergenic 20.0%
!! TCTTGAGATACAATTAATAA+GGG + chr1_2:24179026-24179045 None:intergenic 20.0%
!! ATCTTGAGATACAATTAATA+AGG + chr1_2:24179027-24179046 None:intergenic 20.0%
!! AAATAATGAATTCAAAACCA+TGG - chr1_2:24179898-24179917 Msa0063580:intron 20.0%
!! AATAATGAATTCAAAACCAT+GGG - chr1_2:24179899-24179918 Msa0063580:intron 20.0%
!!! ATTTTTCTTTTCCATTGATT+TGG + chr1_2:24179935-24179954 None:intergenic 20.0%
!! ATGTATGTAAACAGATATAA+TGG - chr1_2:24180838-24180857 Msa0063580:exon 20.0%
! ACAAAAAATCAAAGAAAGTG+TGG - chr1_2:24175286-24175305 Msa0063580:three_prime_UTR 25.0%
!!! AGTCTTTAAAATTTTAGGAG+AGG - chr1_2:24176017-24176036 Msa0063580:intron 25.0%
! ATTGAAGTCTTCAATTACAT+TGG - chr1_2:24176089-24176108 Msa0063580:intron 25.0%
!! CATTCATAAGGAAGATATTT+TGG - chr1_2:24176236-24176255 Msa0063580:intron 25.0%
!! TGGAAATGTTTTTCACATTT+AGG - chr1_2:24176298-24176317 Msa0063580:intron 25.0%
!! AAATAGAGTTTGAGTTATGT+TGG - chr1_2:24176337-24176356 Msa0063580:intron 25.0%
! GGAGTTCATTAAAATAAAAG+TGG - chr1_2:24176377-24176396 Msa0063580:intron 25.0%
! TTTGGATGCACAAAATAAAA+AGG - chr1_2:24176539-24176558 Msa0063580:intron 25.0%
! TCGTAGTTAATTTACTTGAT+TGG - chr1_2:24176637-24176656 Msa0063580:intron 25.0%
! AAACAAGGAAAACTAATATC+AGG + chr1_2:24176897-24176916 None:intergenic 25.0%
!!! ATATTGATTCAGCAAAAACA+AGG + chr1_2:24176912-24176931 None:intergenic 25.0%
!!! TTTGAGCAATTTTCAAGTAT+CGG - chr1_2:24177016-24177035 Msa0063580:intron 25.0%
!! TTATTACTACCAATTTTCTG+AGG - chr1_2:24177293-24177312 Msa0063580:intron 25.0%
!! TATTACTACCAATTTTCTGA+GGG - chr1_2:24177294-24177313 Msa0063580:intron 25.0%
! AGATTTAAACTGAAAGTAAG+AGG + chr1_2:24177772-24177791 None:intergenic 25.0%
! ACTTTCAGTTTAAATCTTTC+AGG - chr1_2:24177775-24177794 Msa0063580:intron 25.0%
!!! AAGTTTTTGACTGTTAAGAA+TGG + chr1_2:24177985-24178004 None:intergenic 25.0%
! AACAGTCAAAAACTTTCTTT+AGG - chr1_2:24177990-24178009 Msa0063580:intron 25.0%
! AAGATGAATGTTTGATGTTA+TGG - chr1_2:24178441-24178460 Msa0063580:CDS 25.0%
! TTTGTGTATCCATTAGTTAT+TGG - chr1_2:24178692-24178711 Msa0063580:intron 25.0%
! GAATTTGAACAAATCACTAT+TGG - chr1_2:24178907-24178926 Msa0063580:intron 25.0%
! AAACAGTAAGATGAATAGTT+AGG + chr1_2:24179051-24179070 None:intergenic 25.0%
!!! TTACTGTTTTTGTCAAATAG+CGG - chr1_2:24179062-24179081 Msa0063580:intron 25.0%
!!! TCAAAGAAAGTTGATGTATT+TGG - chr1_2:24179183-24179202 Msa0063580:intron 25.0%
!! GATGTACTTGGTTTAAAATT+TGG + chr1_2:24179210-24179229 None:intergenic 25.0%
! TCAAACAAAATTGATGTACT+TGG + chr1_2:24179222-24179241 None:intergenic 25.0%
!! CTTTTGCTTATGTTTTGTAA+TGG - chr1_2:24179246-24179265 Msa0063580:intron 25.0%
!! AATCATCTTTTCCACTAATT+AGG + chr1_2:24179590-24179609 None:intergenic 25.0%
! TAATTAGTGGAAAAGATGAT+TGG - chr1_2:24179589-24179608 Msa0063580:intron 25.0%
! AGAGTGAAAATAAGGAAATA+TGG + chr1_2:24179680-24179699 None:intergenic 25.0%
! TGTAAAAAACACGGAAATAT+GGG + chr1_2:24179765-24179784 None:intergenic 25.0%
! GATTTATGGTGTAAAAAACA+CGG + chr1_2:24179774-24179793 None:intergenic 25.0%
! AACAAGGAAATATGGATTTA+TGG + chr1_2:24179788-24179807 None:intergenic 25.0%
!!! ATGAAATTTTTTAGTTGCTG+TGG + chr1_2:24179864-24179883 None:intergenic 25.0%
! ATAATGAATTCAAAACCATG+GGG - chr1_2:24179900-24179919 Msa0063580:intron 25.0%
!!! CAGGGTTTTTTTTTTGATAT+AGG + chr1_2:24179987-24180006 None:intergenic 25.0%
! TTTAACTCTGAATTTCATCA+GGG + chr1_2:24180005-24180024 None:intergenic 25.0%
! ATTTAACTCTGAATTTCATC+AGG + chr1_2:24180006-24180025 None:intergenic 25.0%
! TAAAGACAACTAGAAATAGA+TGG + chr1_2:24180149-24180168 None:intergenic 25.0%
!! TTAGCAATATTTTCATAGTG+TGG - chr1_2:24180166-24180185 Msa0063580:intron 25.0%
! ACAAATTGAATTACCTTGTA+CGG + chr1_2:24180351-24180370 None:intergenic 25.0%
! AAATTCTTGAATCTCTATTC+CGG + chr1_2:24180521-24180540 None:intergenic 25.0%
! ATGAAAATAATGCAAAGACT+TGG + chr1_2:24180717-24180736 None:intergenic 25.0%
!! ATTTAGCATCTCTTTCTTTT+AGG - chr1_2:24180756-24180775 Msa0063580:CDS 25.0%
!!! CATCTTATTTTGTTTGTCAG+CGG + chr1_2:24175127-24175146 None:intergenic 30.0%
! AATCAAAGAAAGTGTGGATA+TGG - chr1_2:24175292-24175311 Msa0063580:three_prime_UTR 30.0%
CAAAATACATGACCAATCAT+TGG + chr1_2:24175400-24175419 None:intergenic 30.0%
AACACTAAGTAGAAACACAA+TGG + chr1_2:24175526-24175545 None:intergenic 30.0%
! ATTGTGTTTCTACTTAGTGT+TGG - chr1_2:24175525-24175544 Msa0063580:CDS 30.0%
ACTACACATGTCATATCTAT+AGG + chr1_2:24175672-24175691 None:intergenic 30.0%
TGAAAATTCAGCTTTCATTG+TGG - chr1_2:24175854-24175873 Msa0063580:intron 30.0%
TTTCTATGACAACTATCCAA+GGG + chr1_2:24175962-24175981 None:intergenic 30.0%
ATTTCTATGACAACTATCCA+AGG + chr1_2:24175963-24175982 None:intergenic 30.0%
!!! CTTTAAAATTTTAGGAGAGG+AGG - chr1_2:24176020-24176039 Msa0063580:intron 30.0%
TCACAAACCACTTAAGTATT+TGG + chr1_2:24176068-24176087 None:intergenic 30.0%
ACAAATTTGATCCAATGTCT+TGG - chr1_2:24176208-24176227 Msa0063580:intron 30.0%
!! TTGGTGATTTTGAATTTTGC+CGG - chr1_2:24176356-24176375 Msa0063580:intron 30.0%
AGTTAATTTACTTGATTGGC+AGG - chr1_2:24176641-24176660 Msa0063580:intron 30.0%
TCTAGACACAGAATAATCAA+CGG + chr1_2:24177121-24177140 None:intergenic 30.0%
ATAAACAACCACATTTCTTC+AGG + chr1_2:24177344-24177363 None:intergenic 30.0%
ATGTGGTTGTTTATATTTGC+TGG - chr1_2:24177350-24177369 Msa0063580:CDS 30.0%
! TTGCAACCTTTGAATTTTGT+AGG - chr1_2:24177634-24177653 Msa0063580:intron 30.0%
AATACTCAAGAAGCTTCAAA+TGG + chr1_2:24177740-24177759 None:intergenic 30.0%
! CTCGTATGTATTCATTTTGA+TGG - chr1_2:24177935-24177954 Msa0063580:CDS 30.0%
GTCAAAAACTTTCTTTAGGT+TGG - chr1_2:24177994-24178013 Msa0063580:intron 30.0%
AAGAAATAATCCTCTAGCAA+AGG + chr1_2:24178022-24178041 None:intergenic 30.0%
!! GCTATTTTCATAAGCTATCT+TGG + chr1_2:24178266-24178285 None:intergenic 30.0%
!! TTAACCAAACTAGTCTTTCA+TGG - chr1_2:24178380-24178399 Msa0063580:intron 30.0%
ATTCATCATAGAGTTTCTCT+TGG + chr1_2:24178475-24178494 None:intergenic 30.0%
ATTACAAGTAACTGGTGAAA+AGG + chr1_2:24178498-24178517 None:intergenic 30.0%
ACCAGTTACTTGTAATAACA+GGG - chr1_2:24178502-24178521 Msa0063580:CDS 30.0%
!!! TGATTTTAATTCTGACAGGT+AGG + chr1_2:24178569-24178588 None:intergenic 30.0%
TACCTGTCAGAATTAAAATC+AGG - chr1_2:24178568-24178587 Msa0063580:intron 30.0%
!!! TTCCTGATTTTAATTCTGAC+AGG + chr1_2:24178573-24178592 None:intergenic 30.0%
GTCTACTTTCTATCTTTACA+CGG + chr1_2:24178648-24178667 None:intergenic 30.0%
AAAGGATACTTAGTATGAGA+CGG + chr1_2:24178737-24178756 None:intergenic 30.0%
! TGTTTCTTATGTGTTCTAGA+AGG + chr1_2:24178790-24178809 None:intergenic 30.0%
!! CAATGGTGAGTTGATTAATT+AGG + chr1_2:24178858-24178877 None:intergenic 30.0%
! TTGCTTATGTTTTGTAATGG+AGG - chr1_2:24179249-24179268 Msa0063580:intron 30.0%
!! TGCTTATGTTTTGTAATGGA+GGG - chr1_2:24179250-24179269 Msa0063580:intron 30.0%
TAACAAAGTAGTTAGTGACA+AGG + chr1_2:24179354-24179373 None:intergenic 30.0%
TAAAAGACAGGTAATATGAG+AGG - chr1_2:24179457-24179476 Msa0063580:CDS 30.0%
AAAAGACAGGTAATATGAGA+GGG - chr1_2:24179458-24179477 Msa0063580:CDS 30.0%
!! TTTTGAAGGTAGGAACATAA+GGG + chr1_2:24179548-24179567 None:intergenic 30.0%
!! TTTTTGAAGGTAGGAACATA+AGG + chr1_2:24179549-24179568 None:intergenic 30.0%
!!! TAAGGAAGTTTGGTTTTTGA+AGG + chr1_2:24179562-24179581 None:intergenic 30.0%
ATGATGCTAGAGTGAAAATA+AGG + chr1_2:24179688-24179707 None:intergenic 30.0%
TATGGGTGCAGTTAAAAATA+TGG + chr1_2:24179748-24179767 None:intergenic 30.0%
GTGTAAAAAACACGGAAATA+TGG + chr1_2:24179766-24179785 None:intergenic 30.0%
TAATGAATTCAAAACCATGG+GGG - chr1_2:24179901-24179920 Msa0063580:intron 30.0%
TTGTAAGTGTTATACATGGT+GGG + chr1_2:24180029-24180048 None:intergenic 30.0%
TTTGTAAGTGTTATACATGG+TGG + chr1_2:24180030-24180049 None:intergenic 30.0%
GAGTTTGTAAGTGTTATACA+TGG + chr1_2:24180033-24180052 None:intergenic 30.0%
CAAATTGAATTACCTTGTAC+GGG + chr1_2:24180350-24180369 None:intergenic 30.0%
AACGGTTTATTTCCTGAATA+GGG + chr1_2:24180421-24180440 None:intergenic 30.0%
TAACGGTTTATTTCCTGAAT+AGG + chr1_2:24180422-24180441 None:intergenic 30.0%
!!! ACTGGAAAAGCTGTTTTTAA+CGG + chr1_2:24180439-24180458 None:intergenic 30.0%
GAAGTTCTATTGAGAATACA+AGG - chr1_2:24180481-24180500 Msa0063580:intron 30.0%
TTCTATTGAGAATACAAGGA+GGG - chr1_2:24180485-24180504 Msa0063580:intron 30.0%
!!! AGAGTGGTTCATGATTTTTT+TGG - chr1_2:24180646-24180665 Msa0063580:CDS 30.0%
!!! TTCATGATTTTTTTGGCTAG+AGG - chr1_2:24180653-24180672 Msa0063580:CDS 30.0%
! GTAAACAGATATAATGGAGT+TGG - chr1_2:24180844-24180863 Msa0063580:exon 30.0%
ATGTCTTTACTGTCGCAAAT+TGG - chr1_2:24175144-24175163 Msa0063580:three_prime_UTR 35.0%
TTGTAGAAGAACAAGGTTTG+AGG + chr1_2:24175218-24175237 None:intergenic 35.0%
CAAGAAGAAGAAGAAGAAGA+AGG + chr1_2:24175243-24175262 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTTCT+TGG - chr1_2:24175241-24175260 Msa0063580:three_prime_UTR 35.0%
AGTATTCCATCCTCTTTCAA+CGG + chr1_2:24175346-24175365 None:intergenic 35.0%
CAAGATGAGGAAGATTAGAT+GGG + chr1_2:24175377-24175396 None:intergenic 35.0%
TGGAAATTCTGCTTTCATTG+CGG - chr1_2:24175545-24175564 Msa0063580:CDS 35.0%
ACTCAAATTTCGCAATTAGG+AGG + chr1_2:24175582-24175601 None:intergenic 35.0%
GCAACTCAAATTTCGCAATT+AGG + chr1_2:24175585-24175604 None:intergenic 35.0%
TGTGTAGTGTTTGTAAAGCT+TGG - chr1_2:24175684-24175703 Msa0063580:CDS 35.0%
GTGTAGTGTTTGTAAAGCTT+GGG - chr1_2:24175685-24175704 Msa0063580:CDS 35.0%
CTAACTCAACCATACAAAAC+CGG + chr1_2:24175729-24175748 None:intergenic 35.0%
TTCTATGACAACTATCCAAG+GGG + chr1_2:24175961-24175980 None:intergenic 35.0%
TGAATGTCATTCCAAGACAT+TGG + chr1_2:24176222-24176241 None:intergenic 35.0%
GTCTTGGAATGACATTCATA+AGG - chr1_2:24176224-24176243 Msa0063580:intron 35.0%
TTTGGCGATAGTAAAATGCT+TGG - chr1_2:24176254-24176273 Msa0063580:intron 35.0%
!! ATTTGGAATTTTGGCCATGA+TGG - chr1_2:24176466-24176485 Msa0063580:intron 35.0%
! TGCTAGTGAGAAGGATATTT+TGG - chr1_2:24176521-24176540 Msa0063580:intron 35.0%
TGTCGAAACGTCAAAAATTG+TGG + chr1_2:24176568-24176587 None:intergenic 35.0%
! AATTTTTGACGTTTCGACAC+CGG - chr1_2:24176569-24176588 Msa0063580:intron 35.0%
TTCAAACGACTTTCAAGCAT+TGG + chr1_2:24176744-24176763 None:intergenic 35.0%
!! AAGTTATTTTCTCACCCGTA+AGG - chr1_2:24176937-24176956 Msa0063580:intron 35.0%
CATTAGCTAGTCCTTAAAGA+TGG + chr1_2:24177085-24177104 None:intergenic 35.0%
ACTTTCTACCTGAAGAAATG+TGG - chr1_2:24177333-24177352 Msa0063580:CDS 35.0%
! GCAGCAATTATATTTTCTGC+AGG + chr1_2:24177471-24177490 None:intergenic 35.0%
!! ATACAGTCTTTTGGCTGTTT+TGG + chr1_2:24177497-24177516 None:intergenic 35.0%
! AGATGGCAAATACAGTCTTT+TGG + chr1_2:24177506-24177525 None:intergenic 35.0%
!! AATATTAGTAGGGGTGTTAC+AGG - chr1_2:24177568-24177587 Msa0063580:intron 35.0%
ATTCAAAGGTTGCAACTGTA+AGG + chr1_2:24177629-24177648 None:intergenic 35.0%
CAAGTGCCTACAAAATTCAA+AGG + chr1_2:24177643-24177662 None:intergenic 35.0%
! ATTTTGTAGGCACTTGAACA+TGG - chr1_2:24177647-24177666 Msa0063580:intron 35.0%
ATCACCTTAAGCTCAAGAAT+AGG + chr1_2:24177710-24177729 None:intergenic 35.0%
! TTGAAGCTTCTTGAGTATTG+AGG - chr1_2:24177741-24177760 Msa0063580:intron 35.0%
CATTGCTTTCTTCTGTTCTT+CGG + chr1_2:24177811-24177830 None:intergenic 35.0%
AACTTGAATTTGTGTCACAG+TGG + chr1_2:24177852-24177871 None:intergenic 35.0%
!! ACAAATTCAAGTTGCTGGAA+TGG - chr1_2:24177859-24177878 Msa0063580:intron 35.0%
!! CAAATTCAAGTTGCTGGAAT+GGG - chr1_2:24177860-24177879 Msa0063580:intron 35.0%
!! AAATTCAAGTTGCTGGAATG+GGG - chr1_2:24177861-24177880 Msa0063580:intron 35.0%
TCTTGTTCATTCAGAATGCT+TGG - chr1_2:24178038-24178057 Msa0063580:intron 35.0%
AAGCTATCTTGGAGACTTTA+TGG + chr1_2:24178255-24178274 None:intergenic 35.0%
CATCAAACATTCATCTTCCA+AGG + chr1_2:24178438-24178457 None:intergenic 35.0%
CACCAGTTACTTGTAATAAC+AGG - chr1_2:24178501-24178520 Msa0063580:CDS 35.0%
TCCCTGTTATTACAAGTAAC+TGG + chr1_2:24178506-24178525 None:intergenic 35.0%
ATCAGGAAAAGAAGTGATTG+TGG - chr1_2:24178585-24178604 Msa0063580:intron 35.0%
!! TGGTGAGTTGATTAATTAGG+TGG + chr1_2:24178855-24178874 None:intergenic 35.0%
GCACTGCTATTGAAAAACAA+TGG + chr1_2:24178875-24178894 None:intergenic 35.0%
TGTACTAACGAGCAACAAAA+GGG + chr1_2:24179117-24179136 None:intergenic 35.0%
TTGTACTAACGAGCAACAAA+AGG + chr1_2:24179118-24179137 None:intergenic 35.0%
TCAATCGCAGAAAATAGTAG+CGG + chr1_2:24179329-24179348 None:intergenic 35.0%
TGTGCAGAATCTTAAAAGAC+AGG - chr1_2:24179445-24179464 Msa0063580:CDS 35.0%
GGAACATAAGGGTTAGATAA+GGG + chr1_2:24179537-24179556 None:intergenic 35.0%
AGGAACATAAGGGTTAGATA+AGG + chr1_2:24179538-24179557 None:intergenic 35.0%
!!! GAAGTTTGGTTTTTGAAGGT+AGG + chr1_2:24179558-24179577 None:intergenic 35.0%
TTAGGAGTGATAAGGAAGTT+TGG + chr1_2:24179572-24179591 None:intergenic 35.0%
TCCTTATCACTCCTAATTAG+TGG - chr1_2:24179576-24179595 Msa0063580:intron 35.0%
TCCACTAATTAGGAGTGATA+AGG + chr1_2:24179580-24179599 None:intergenic 35.0%
GATGACTTACTCTATTGTGA+TGG - chr1_2:24179710-24179729 Msa0063580:intron 35.0%
TCGCAGAAAACAAGGAAATA+TGG + chr1_2:24179796-24179815 None:intergenic 35.0%
AATATGGATCGCAGAAAACA+AGG + chr1_2:24179804-24179823 None:intergenic 35.0%
!! TTTTAGTTGCTGTGGATTGA+TGG + chr1_2:24179856-24179875 None:intergenic 35.0%
AATGAATTCAAAACCATGGG+GGG - chr1_2:24179902-24179921 Msa0063580:intron 35.0%
GTTCTATTGAGAATACAAGG+AGG - chr1_2:24180484-24180503 Msa0063580:intron 35.0%
TCTATTGAGAATACAAGGAG+GGG - chr1_2:24180486-24180505 Msa0063580:intron 35.0%
!!! GATTTTTTTGGCTAGAGGAA+AGG - chr1_2:24180658-24180677 Msa0063580:CDS 35.0%
! AAGACTTGGTCTGATATCTT+TGG + chr1_2:24180703-24180722 None:intergenic 35.0%
AAACGTGTGTTGGAAGTAGA+AGG + chr1_2:24175192-24175211 None:intergenic 40.0%
!! GAAGGCATTGTAGAAGAACA+AGG + chr1_2:24175225-24175244 None:intergenic 40.0%
TTCTTCTTCTTGGACACCAT+TGG - chr1_2:24175251-24175270 Msa0063580:three_prime_UTR 40.0%
TTGTTACCAGTATCCTCCAA+TGG + chr1_2:24175270-24175289 None:intergenic 40.0%
GATATGGACAAAGAACAAGC+AGG - chr1_2:24175308-24175327 Msa0063580:three_prime_UTR 40.0%
GCAAGATGAGGAAGATTAGA+TGG + chr1_2:24175378-24175397 None:intergenic 40.0%
TTCCTCATCTTGCCAATGAT+TGG - chr1_2:24175385-24175404 Msa0063580:intron 40.0%
ATTTCGCAATTAGGAGGCTA+GGG + chr1_2:24175576-24175595 None:intergenic 40.0%
AATTTCGCAATTAGGAGGCT+AGG + chr1_2:24175577-24175596 None:intergenic 40.0%
!! CGGTTTTGTATGGTTGAGTT+AGG - chr1_2:24175727-24175746 Msa0063580:intron 40.0%
AGCCTAAAGTATGGACAATG+CGG + chr1_2:24175807-24175826 None:intergenic 40.0%
TGTCCATACTTTAGGCTCAT+TGG - chr1_2:24175810-24175829 Msa0063580:intron 40.0%
GAACCAATGAGCCTAAAGTA+TGG + chr1_2:24175816-24175835 None:intergenic 40.0%
! AACCAGTGCTGAGATTATGA+AGG + chr1_2:24175916-24175935 None:intergenic 40.0%
TTAGGAGAGGAGGAACAATT+TGG - chr1_2:24176030-24176049 Msa0063580:intron 40.0%
! TCCTCTTTTTGCTAGTGAGA+AGG - chr1_2:24176512-24176531 Msa0063580:intron 40.0%
TCCTTCTCACTAGCAAAAAG+AGG + chr1_2:24176516-24176535 None:intergenic 40.0%
AAGTGCTCATATAGTCCGTA+CGG - chr1_2:24176714-24176733 Msa0063580:intron 40.0%
!! TTCCTTGTTATTTGCCGAAC+CGG + chr1_2:24176848-24176867 None:intergenic 40.0%
CTTAAAGATGGCAAATGCTG+GGG + chr1_2:24177073-24177092 None:intergenic 40.0%
CCTTAAAGATGGCAAATGCT+GGG + chr1_2:24177074-24177093 None:intergenic 40.0%
TCCTTAAAGATGGCAAATGC+TGG + chr1_2:24177075-24177094 None:intergenic 40.0%
CAGAATAATCAACGGATGAC+AGG + chr1_2:24177113-24177132 None:intergenic 40.0%
CTCATCTTCCCTCAGAAAAT+TGG + chr1_2:24177305-24177324 None:intergenic 40.0%
TTGTACACAATTGCTCACTC+AGG - chr1_2:24177440-24177459 Msa0063580:CDS 40.0%
TTCGGATGCATTATCAGAGA+TGG + chr1_2:24177523-24177542 None:intergenic 40.0%
CTCAAGAAATGTCTGAGCTT+CGG + chr1_2:24177541-24177560 None:intergenic 40.0%
TGAGCCTATTCTTGAGCTTA+AGG - chr1_2:24177703-24177722 Msa0063580:intron 40.0%
AAGAAGCTTCAAATGGAGGA+CGG + chr1_2:24177733-24177752 None:intergenic 40.0%
ACTCAAGAAGCTTCAAATGG+AGG + chr1_2:24177737-24177756 None:intergenic 40.0%
AATTTGTGTCACAGTGGCTT+TGG + chr1_2:24177846-24177865 None:intergenic 40.0%
!! GTGACACAAATTCAAGTTGC+TGG - chr1_2:24177854-24177873 Msa0063580:intron 40.0%
!! AATTCAAGTTGCTGGAATGG+GGG - chr1_2:24177862-24177881 Msa0063580:intron 40.0%
! ACATTGCAAGCAGACCTTTT+CGG - chr1_2:24178070-24178089 Msa0063580:CDS 40.0%
AGTTTGAGCCAGAGAATTGA+AGG + chr1_2:24178115-24178134 None:intergenic 40.0%
! TGAGCCATGAAAGACTAGTT+TGG + chr1_2:24178387-24178406 None:intergenic 40.0%
CAAACATTCATCTTCCAAGG+AGG + chr1_2:24178435-24178454 None:intergenic 40.0%
AGTGATTGTGGTTGATCAAC+AGG - chr1_2:24178597-24178616 Msa0063580:intron 40.0%
GTGATTGTGGTTGATCAACA+GGG - chr1_2:24178598-24178617 Msa0063580:intron 40.0%
CGGCAAAGAATTGCAATTGT+TGG - chr1_2:24178622-24178641 Msa0063580:intron 40.0%
AAGTAGACCACTAATCCTTG+TGG - chr1_2:24178660-24178679 Msa0063580:intron 40.0%
GATACTTAGTATGAGACGGA+TGG + chr1_2:24178733-24178752 None:intergenic 40.0%
!! GGTGGATTGAGATACAAGAA+GGG + chr1_2:24178837-24178856 None:intergenic 40.0%
!! AGGTGGATTGAGATACAAGA+AGG + chr1_2:24178838-24178857 None:intergenic 40.0%
ATAGCAGTGCTATAGTAGAG+CGG - chr1_2:24178885-24178904 Msa0063580:intron 40.0%
AAGGGTTAGATAAGGGATTG+TGG + chr1_2:24179530-24179549 None:intergenic 40.0%
GACTTACTCTATTGTGATGG+TGG - chr1_2:24179713-24179732 Msa0063580:intron 40.0%
AATGGATGGACGAAGTAAGA+TGG - chr1_2:24180115-24180134 Msa0063580:intron 40.0%
TGTTGTCTGTTTCCCTATTC+AGG - chr1_2:24180406-24180425 Msa0063580:intron 40.0%
! CCAACTTTTAGTGATGTCAC+TGG + chr1_2:24180457-24180476 None:intergenic 40.0%
CCAGTGACATCACTAAAAGT+TGG - chr1_2:24180454-24180473 Msa0063580:intron 40.0%
CTCTAGCATCAAAGTTGCAA+AGG + chr1_2:24180630-24180649 None:intergenic 40.0%
TTGCAACTTTGATGCTAGAG+TGG - chr1_2:24180630-24180649 Msa0063580:CDS 40.0%
GGAAAGGAGCAGCTTATATT+TGG - chr1_2:24180674-24180693 Msa0063580:CDS 40.0%
GGAATTGTGTAAAGTCCAGT+TGG - chr1_2:24180777-24180796 Msa0063580:CDS 40.0%
GGCAAAAGATGCTTCACTTT+AGG - chr1_2:24180798-24180817 Msa0063580:CDS 40.0%
TTCTTCTTGGACACCATTGG+AGG - chr1_2:24175254-24175273 Msa0063580:three_prime_UTR 45.0%
GACCAATCATTGGCAAGATG+AGG + chr1_2:24175390-24175409 None:intergenic 45.0%
TTTCGCAATTAGGAGGCTAG+GGG + chr1_2:24175575-24175594 None:intergenic 45.0%
! GGTGTTGGAGGTTACAATGA+AGG + chr1_2:24175607-24175626 None:intergenic 45.0%
TCCAACACCTTCGCTATGTT+GGG - chr1_2:24175618-24175637 Msa0063580:intron 45.0%
!! CCATACAAAACCGGCTTGTA+TGG + chr1_2:24175720-24175739 None:intergenic 45.0%
!! CCATACAAGCCGGTTTTGTA+TGG - chr1_2:24175717-24175736 Msa0063580:intron 45.0%
TCCCGCATTGTCCATACTTT+AGG - chr1_2:24175802-24175821 Msa0063580:intron 45.0%
GCCTAAAGTATGGACAATGC+GGG + chr1_2:24175806-24175825 None:intergenic 45.0%
TTCCTGATAAGGAGGCTAGA+GGG + chr1_2:24175883-24175902 None:intergenic 45.0%
AGCCTCCTTATCAGGAACAT+TGG - chr1_2:24175886-24175905 Msa0063580:intron 45.0%
GACCAATGTTCCTGATAAGG+AGG + chr1_2:24175891-24175910 None:intergenic 45.0%
GAGGACCAATGTTCCTGATA+AGG + chr1_2:24175894-24175913 None:intergenic 45.0%
! CAGTGCTGAGATTATGAAGG+AGG + chr1_2:24175913-24175932 None:intergenic 45.0%
CTCCTTCATAATCTCAGCAC+TGG - chr1_2:24175911-24175930 Msa0063580:intron 45.0%
AAGAGGACAGATGACTGCAA+TGG + chr1_2:24176499-24176518 None:intergenic 45.0%
!! CTAAGTCGTTCTAGTTCCTC+CGG + chr1_2:24176591-24176610 None:intergenic 45.0%
ACTAGAACGACTTAGACCTG+AGG - chr1_2:24176596-24176615 Msa0063580:intron 45.0%
! TTTTCTGCTTGCTCATCCTC+AGG + chr1_2:24176615-24176634 None:intergenic 45.0%
AACATCAACCCAATCTGTGC+CGG - chr1_2:24176826-24176845 Msa0063580:intron 45.0%
! TTTTCTCACCCGTAAGGATG+TGG - chr1_2:24176943-24176962 Msa0063580:intron 45.0%
CACCTTTAAGCAGAAGTCCA+GGG + chr1_2:24176973-24176992 None:intergenic 45.0%
ACTTCTGCTTAAAGGTGGTG+AGG - chr1_2:24176976-24176995 Msa0063580:intron 45.0%
GAAGAGTCACATGTGGTCTA+CGG + chr1_2:24177046-24177065 None:intergenic 45.0%
CCCAGCATTTGCCATCTTTA+AGG - chr1_2:24177071-24177090 Msa0063580:intron 45.0%
TAATCAACGGATGACAGGTG+TGG + chr1_2:24177108-24177127 None:intergenic 45.0%
CGAAGCTCAGACATTTCTTG+AGG - chr1_2:24177539-24177558 Msa0063580:intron 45.0%
!! TTAGTAGGGGTGTTACAGGT+CGG - chr1_2:24177572-24177591 Msa0063580:intron 45.0%
GCACTTGAACATGGCTTAGA+TGG - chr1_2:24177656-24177675 Msa0063580:intron 45.0%
! AGTCTTATGAGACCTGGTGA+AGG - chr1_2:24177908-24177927 Msa0063580:CDS 45.0%
! TAGGTTGGATCCTTTGCTAG+AGG - chr1_2:24178009-24178028 Msa0063580:intron 45.0%
! CATTGCAAGCAGACCTTTTC+GGG - chr1_2:24178071-24178090 Msa0063580:CDS 45.0%
AAGTTGCGCCTTCAATTCTC+TGG - chr1_2:24178104-24178123 Msa0063580:CDS 45.0%
TTGTGGTTGATCAACAGGGT+CGG - chr1_2:24178602-24178621 Msa0063580:intron 45.0%
TAGACCACTAATCCTTGTGG+AGG - chr1_2:24178663-24178682 Msa0063580:intron 45.0%
TTTGCCTCCACAAGGATTAG+TGG + chr1_2:24178670-24178689 None:intergenic 45.0%
ACTAATCCTTGTGGAGGCAA+AGG - chr1_2:24178669-24178688 Msa0063580:intron 45.0%
AATGGAGGGAGTAGCAGTAA+TGG - chr1_2:24179264-24179283 Msa0063580:intron 45.0%
AGACAGGTAATATGAGAGGG+AGG - chr1_2:24179461-24179480 Msa0063580:CDS 45.0%
GGGGACATCTACCAAATCAA+TGG - chr1_2:24179921-24179940 Msa0063580:intron 45.0%
!! GCTTTAGTTTGTCCCGTACA+AGG - chr1_2:24180335-24180354 Msa0063580:intron 45.0%
!! GTGAAGCATCTTTTGCCAAC+TGG + chr1_2:24180795-24180814 None:intergenic 45.0%
!!! TAAAAAAATAATATTTTCTT+TGG + chr1_2:24176125-24176144 None:intergenic 5.0%
!!! AATTATAATTTTATGATATT+TGG - chr1_2:24176449-24176468 Msa0063580:intron 5.0%
GTGTTGGAAGTAGAAGGTGG+TGG + chr1_2:24175186-24175205 None:intergenic 50.0%
CGTGTGTTGGAAGTAGAAGG+TGG + chr1_2:24175189-24175208 None:intergenic 50.0%
! TTTGAGGCGCAAACGTGTGT+TGG + chr1_2:24175202-24175221 None:intergenic 50.0%
TGGACACCATTGGAGGATAC+TGG - chr1_2:24175261-24175280 Msa0063580:three_prime_UTR 50.0%
ATGACTGCAGCCGTTGAAAG+AGG - chr1_2:24175333-24175352 Msa0063580:intron 50.0%
!! CAACATAGCGAAGGTGTTGG+AGG + chr1_2:24175619-24175638 None:intergenic 50.0%
CTCCAACACCTTCGCTATGT+TGG - chr1_2:24175617-24175636 Msa0063580:intron 50.0%
TCCTGATAAGGAGGCTAGAG+GGG + chr1_2:24175882-24175901 None:intergenic 50.0%
GTTCCTGATAAGGAGGCTAG+AGG + chr1_2:24175884-24175903 None:intergenic 50.0%
! GACAACTATCCAAGGGGTGT+GGG + chr1_2:24175955-24175974 None:intergenic 50.0%
TGACAACTATCCAAGGGGTG+TGG + chr1_2:24175956-24175975 None:intergenic 50.0%
GCAATGGCTGTACTCCATCA+TGG + chr1_2:24176483-24176502 None:intergenic 50.0%
! TTTTGACGTTTCGACACCGG+AGG - chr1_2:24176572-24176591 Msa0063580:intron 50.0%
TGCTCATATAGTCCGTACGG+TGG - chr1_2:24176717-24176736 Msa0063580:intron 50.0%
!! TCAAGCATTGGTCCACCGTA+CGG + chr1_2:24176732-24176751 None:intergenic 50.0%
!! GGGTTGATGTTTCAGTTGCG+AGG + chr1_2:24176817-24176836 None:intergenic 50.0%
!! TGCCGGTTCGGCAAATAACA+AGG - chr1_2:24176843-24176862 Msa0063580:intron 50.0%
GACCCTGGACTTCTGCTTAA+AGG - chr1_2:24176968-24176987 Msa0063580:intron 50.0%
CCACCTTTAAGCAGAAGTCC+AGG + chr1_2:24176974-24176993 None:intergenic 50.0%
CCTGGACTTCTGCTTAAAGG+TGG - chr1_2:24176971-24176990 Msa0063580:intron 50.0%
CTGCTTAAAGGTGGTGAGGT+CGG - chr1_2:24176980-24176999 Msa0063580:intron 50.0%
AAGATGGCAAATGCTGGGGT+GGG + chr1_2:24177069-24177088 None:intergenic 50.0%
AAAGATGGCAAATGCTGGGG+TGG + chr1_2:24177070-24177089 None:intergenic 50.0%
! CTCTGCAGTCTTATGAGACC+TGG - chr1_2:24177902-24177921 Msa0063580:CDS 50.0%
CATACGAGAAGTCCTTCACC+AGG + chr1_2:24177923-24177942 None:intergenic 50.0%
!!! CAGACCTTTTCGGGTGAATG+CGG - chr1_2:24178080-24178099 Msa0063580:CDS 50.0%
CTTACCGCATTCACCCGAAA+AGG + chr1_2:24178087-24178106 None:intergenic 50.0%
CTCTACTCTCTCTACCTCCT+TGG - chr1_2:24178418-24178437 Msa0063580:intron 50.0%
ACAGCAATGTAGGCGTGAAC+TGG + chr1_2:24178529-24178548 None:intergenic 50.0%
CACAAACCTTTGCCTCCACA+AGG + chr1_2:24178678-24178697 None:intergenic 50.0%
ATTTGGTAGATGTCCCCCCA+TGG + chr1_2:24179918-24179937 None:intergenic 50.0%
CTGCAGCCGTTGAAAGAGGA+TGG - chr1_2:24175337-24175356 Msa0063580:intron 55.0%
! GCCCAACATAGCGAAGGTGT+TGG + chr1_2:24175622-24175641 None:intergenic 55.0%
TTCGCTATGTTGGGCGCGAA+GGG - chr1_2:24175627-24175646 Msa0063580:intron 55.0%
GCAGCTCTCACCATACAAGC+CGG - chr1_2:24175707-24175726 Msa0063580:intron 55.0%
AGAGCCTGAAGCCCTCTTGT+TGG - chr1_2:24175776-24175795 Msa0063580:intron 55.0%
GAGCCTGAAGCCCTCTTGTT+GGG - chr1_2:24175777-24175796 Msa0063580:intron 55.0%
ATGCCCAACAAGAGGGCTTC+AGG + chr1_2:24175783-24175802 None:intergenic 55.0%
ATGCGGGATGCCCAACAAGA+GGG + chr1_2:24175790-24175809 None:intergenic 55.0%
AATGCGGGATGCCCAACAAG+AGG + chr1_2:24175791-24175810 None:intergenic 55.0%
!! GCTCATTGGTTCGAGCGTGA+GGG - chr1_2:24175824-24175843 Msa0063580:intron 55.0%
!! CTCATTGGTTCGAGCGTGAG+GGG - chr1_2:24175825-24175844 Msa0063580:intron 55.0%
!! TCATTGGTTCGAGCGTGAGG+GGG - chr1_2:24175826-24175845 Msa0063580:intron 55.0%
CCTGATAAGGAGGCTAGAGG+GGG + chr1_2:24175881-24175900 None:intergenic 55.0%
!! CAACCCAATCTGTGCCGGTT+CGG - chr1_2:24176831-24176850 Msa0063580:intron 55.0%
TTGCCGAACCGGCACAGATT+GGG + chr1_2:24176837-24176856 None:intergenic 55.0%
TTTGCCGAACCGGCACAGAT+TGG + chr1_2:24176838-24176857 None:intergenic 55.0%
TCTCACCCGTAAGGATGTGG+TGG - chr1_2:24176946-24176965 Msa0063580:intron 55.0%
AGGGTCCACCACATCCTTAC+GGG + chr1_2:24176954-24176973 None:intergenic 55.0%
CAGGGTCCACCACATCCTTA+CGG + chr1_2:24176955-24176974 None:intergenic 55.0%
GAGTCACATGTGGTCTACGG+TGG + chr1_2:24177043-24177062 None:intergenic 55.0%
AGATGGCAAATGCTGGGGTG+GGG + chr1_2:24177068-24177087 None:intergenic 55.0%
!! AGGGGTGTTACAGGTCGGTT+TGG - chr1_2:24177577-24177596 Msa0063580:intron 55.0%
! CACGCCTACATTGCTGTTCC+AGG - chr1_2:24178532-24178551 Msa0063580:intron 55.0%
! GCCTACATTGCTGTTCCAGG+CGG - chr1_2:24178535-24178554 Msa0063580:intron 55.0%
ACCGCCTGGAACAGCAATGT+AGG + chr1_2:24178539-24178558 None:intergenic 55.0%
AGGTAGGATGTTCTACCGCC+TGG + chr1_2:24178553-24178572 None:intergenic 55.0%
CTTCGCGCCCAACATAGCGA+AGG + chr1_2:24175628-24175647 None:intergenic 60.0%
CTTCGCTATGTTGGGCGCGA+AGG - chr1_2:24175626-24175645 Msa0063580:intron 60.0%
!! GGCTCATTGGTTCGAGCGTG+AGG - chr1_2:24175823-24175842 Msa0063580:intron 60.0%
CCCCCTCTAGCCTCCTTATC+AGG - chr1_2:24175878-24175897 Msa0063580:intron 60.0%
! CTATCCAAGGGGTGTGGGTG+TGG + chr1_2:24175950-24175969 None:intergenic 60.0%
!! CGTAAGGATGTGGTGGACCC+TGG - chr1_2:24176953-24176972 Msa0063580:intron 60.0%
GGGTGGGGAAGAGTCACATG+TGG + chr1_2:24177053-24177072 None:intergenic 60.0%
CAAGGAGGGGCTCGACATAC+CGG - chr1_2:24180499-24180518 Msa0063580:intron 60.0%
TGAGCCACACCCACACCCCT+TGG - chr1_2:24175943-24175962 Msa0063580:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 24175109 24180889 24175109 ID=Msa0063580;Name=Msa0063580
chr1_2 mRNA 24175109 24180889 24175109 ID=Msa0063580-mRNA-1;Parent=Msa0063580;Name=Msa0063580-mRNA-1;_AED=0.20;_eAED=0.20;_QI=35|1|1|1|0.88|0.8|10|247|401
chr1_2 exon 24175109 24175350 24175109 ID=Msa0063580-mRNA-1:exon:8684;Parent=Msa0063580-mRNA-1
chr1_2 exon 24175438 24175570 24175438 ID=Msa0063580-mRNA-1:exon:8683;Parent=Msa0063580-mRNA-1
chr1_2 exon 24175642 24175717 24175642 ID=Msa0063580-mRNA-1:exon:8682;Parent=Msa0063580-mRNA-1
chr1_2 exon 24177308 24177475 24177308 ID=Msa0063580-mRNA-1:exon:8681;Parent=Msa0063580-mRNA-1
chr1_2 exon 24177897 24177986 24177897 ID=Msa0063580-mRNA-1:exon:8680;Parent=Msa0063580-mRNA-1
chr1_2 exon 24178061 24178201 24178061 ID=Msa0063580-mRNA-1:exon:8679;Parent=Msa0063580-mRNA-1
chr1_2 exon 24178274 24178342 24178274 ID=Msa0063580-mRNA-1:exon:8678;Parent=Msa0063580-mRNA-1
chr1_2 exon 24178438 24178536 24178438 ID=Msa0063580-mRNA-1:exon:8677;Parent=Msa0063580-mRNA-1
chr1_2 exon 24179336 24179502 24179336 ID=Msa0063580-mRNA-1:exon:8676;Parent=Msa0063580-mRNA-1
chr1_2 exon 24180587 24180889 24180587 ID=Msa0063580-mRNA-1:exon:8675;Parent=Msa0063580-mRNA-1
chr1_2 five_prime_UTR 24180855 24180889 24180855 ID=Msa0063580-mRNA-1:five_prime_utr;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24180587 24180854 24180587 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24179336 24179502 24179336 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24178438 24178536 24178438 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24178274 24178342 24178274 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24178061 24178201 24178061 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24177897 24177986 24177897 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24177308 24177475 24177308 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24175642 24175717 24175642 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 CDS 24175443 24175570 24175443 ID=Msa0063580-mRNA-1:cds;Parent=Msa0063580-mRNA-1
chr1_2 three_prime_UTR 24175438 24175442 24175438 ID=Msa0063580-mRNA-1:three_prime_utr;Parent=Msa0063580-mRNA-1
chr1_2 three_prime_UTR 24175109 24175350 24175109 ID=Msa0063580-mRNA-1:three_prime_utr;Parent=Msa0063580-mRNA-1
Gene Sequence

>Msa0063580

ATGTCTTTACTGTCGCAAATTGGATTTGCACAATTCACTCCACCACCTTCTACTTCCAACACACGTTTGCGCCTCAAACCTTGTTCTTCTACAATGCCTTCTTCTTCTTCTTCTTCTTGGACACCATTGGAGGATACTGGTAACAAAAAATCAAAGAAAGTGTGGATATGGACAAAGAACAAGCAGGTTATGACTGCAGCCGTTGAAAGAGGATGGAATACTTTCATTTTCCCATCTAATCTTCCTCATCTTGCCAATGATTGGTCATCCATTGCAGTCATCTGTCCTCTTTTTGCTAGTGAGAAGGATATTTTGGATGCACAAAATAAAAAGGTAGCCACAATTTTTGACGTTTCGACACCGGAGGAACTAGAACGACTTAGACCTGAGGATGAGCAAGCAGAAAACATCGTAGTTAATTTACTTGATTGGCAGGTAATTCCTGCAGAAAATATAATTGCTGCATTCCAAAACAGCCAAAAGACTGTATTTGCCATCTCTGATAATGCATCCGAAGCTCAGACATTTCTTGAGGCACTTGAACATGGCTTAGATGGCATAGTTTTGAAAGTAGAAGATGCTGAGCCTATTCTTGAGCTTAAGGAATATTTCGACCGAAGAACAGAAGAAAGCAATGTATTGAATTTGACCAAAGCCACTGTGACACAAATTCAAGTTGCTGGAATGGGGGATCGTGTTTGTGTTGATCTCTGCAGTCTTATGAGACCTGGTGAAGGACTTCTCGTTGGATCCTTTGCTAGAGGATTATTTCTTGTTCATTCAGAATGCTTGGAGTCAAATTACATTGCAAGCAGACCTTTTCGGGTGAATGCGGGACCAGTTCACGCCTACATTGCTGTTCCAGGCGGTAGAACATCCTACCTGTCAGAATTAAAATCAGGAAAAGAAGTGATTGTGGTTGATCAACAGGGTCGGCAAAGAATTGCAATTGTTGGCCGTGTAAAGATAGAAAGTAGACCACTAATCCTTGTGGAGGCAAAGACAGACTCAGACAATCAAATAATCAGCATACTTTTGCAGAATGCAGAAACAGTTGCTTTAGTTTGTCCCGTACAAGGAAATAAACCGTTAAAAACAGCTTTTCCAGTGACATCACTAAAAGTTGGAGATGAAGTTCTATTGAGAATACAAGGAGGGGCTCGACATACCGGAATAGAGATTCAAGAATTTATAGTTGAGAAATGA

Protein sequence

>Msa0063580

MSLLSQIGFAQFTPPPSTSNTRLRLKPCSSTMPSSSSSSWTPLEDTGNKKSKKVWIWTKNKQVMTAAVERGWNTFIFPSNLPHLANDWSSIAVICPLFASEKDILDAQNKKVATIFDVSTPEELERLRPEDEQAENIVVNLLDWQVIPAENIIAAFQNSQKTVFAISDNASEAQTFLEALEHGLDGIVLKVEDAEPILELKEYFDRRTEESNVLNLTKATVTQIQVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYIAVPGGRTSYLSELKSGKEVIVVDQQGRQRIAIVGRVKIESRPLILVEAKTDSDNQIISILLQNAETVALVCPVQGNKPLKTAFPVTSLKVGDEVLLRIQGGARHTGIEIQEFIVEK*