Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094630 | XP_003622019.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094630 | sp|Q10DV7|ACT1_ORYSJ | 97.613 | 377 | 9 | 0 | 1 | 377 | 1 | 377 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094630 | A0A2Z6LUH8 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045620 | Msa1094630 | 0.815829 | 7.566536e-52 | -8.615850e-47 |
| Msa0089080 | Msa1094630 | 0.819647 | 1.040615e-52 | -8.615850e-47 |
| Msa0091090 | Msa1094630 | -0.807741 | 4.357923e-50 | -8.615850e-47 |
| Msa0623310 | Msa1094630 | 0.805038 | 1.619223e-49 | -8.615850e-47 |
| Msa0705050 | Msa1094630 | -0.837977 | 3.779491e-57 | -8.615850e-47 |
| Msa0715350 | Msa1094630 | 0.800522 | 1.385383e-48 | -8.615850e-47 |
| Msa0732970 | Msa1094630 | 0.801801 | 7.587250e-49 | -8.615850e-47 |
| Msa0835750 | Msa1094630 | 0.812309 | 4.522690e-51 | -8.615850e-47 |
| Msa0135890 | Msa1094630 | 0.831572 | 1.547506e-55 | -8.615850e-47 |
| Msa0238110 | Msa1094630 | 0.801527 | 8.635298e-49 | -8.615850e-47 |
| Msa0428330 | Msa1094630 | -0.817401 | 3.360742e-52 | -8.615850e-47 |
| Msa0999590 | Msa1094630 | -0.845214 | 4.669445e-59 | -8.615850e-47 |
| Msa1036020 | Msa1094630 | 0.811607 | 6.434389e-51 | -8.615850e-47 |
| Msa1040730 | Msa1094630 | 0.820992 | 5.115768e-53 | -8.615850e-47 |
| Msa1094630 | Msa1141250 | 0.806847 | 6.742082e-50 | -8.615850e-47 |
| Msa1094630 | Msa1240060 | 0.841152 | 5.649714e-58 | -8.615850e-47 |
| Msa1094630 | Msa1274810 | -0.805184 | 1.509157e-49 | -8.615850e-47 |
| Msa1094630 | Msa1281370 | 0.815047 | 1.128925e-51 | -8.615850e-47 |
| Msa1094630 | Msa1320530 | 0.846025 | 2.813933e-59 | -8.615850e-47 |
| Msa1094630 | Msa1371800 | 0.815042 | 1.132115e-51 | -8.615850e-47 |
| Msa1094630 | Msa1376310 | 0.815896 | 7.309918e-52 | -8.615850e-47 |
| Msa0319690 | Msa1094630 | 0.813992 | 1.932753e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094630 | MtrunA17_Chr7g0223901 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Msa1094630 | MtrunA17_Chr6g0448881 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| Msa1094630 | MtrunA17_Chr2g0328091 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa1094630 | MtrunA17_Chr1g0175391 | 97.613 | 377 | 9 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa1094630 | MtrunA17_Chr3g0129641 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1094630 | MtrunA17_Chr7g0258721 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa1094630 | MtrunA17_Chr2g0278591 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 751 |
| Msa1094630 | MtrunA17_Chr7g0224401 | 43.272 | 379 | 201 | 3 | 10 | 374 | 7 | 385 | 2.36e-120 | 353 |
| Msa1094630 | MtrunA17_Chr5g0427591 | 37.220 | 446 | 207 | 11 | 1 | 376 | 1 | 443 | 2.52e-91 | 281 |
| Msa1094630 | MtrunA17_Chr8g0361001 | 37.220 | 446 | 207 | 11 | 1 | 376 | 1 | 443 | 3.10e-91 | 281 |
| Msa1094630 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 1.46e-72 | 232 |
| Msa1094630 | MtrunA17_Chr3g0089031 | 38.158 | 380 | 209 | 9 | 7 | 377 | 1 | 363 | 2.44e-70 | 224 |
| Msa1094630 | MtrunA17_Chr2g0305361 | 28.802 | 434 | 243 | 8 | 8 | 377 | 6 | 437 | 5.32e-59 | 197 |
| Msa1094630 | MtrunA17_Chr3g0080021 | 31.313 | 297 | 180 | 9 | 91 | 371 | 179 | 467 | 3.77e-42 | 153 |
| Msa1094630 | MtrunA17_Chr8g0369101 | 31.741 | 293 | 173 | 10 | 91 | 366 | 187 | 469 | 1.09e-37 | 141 |
| Msa1094630 | MtrunA17_Chr3g0111971 | 29.365 | 252 | 159 | 7 | 9 | 245 | 21 | 268 | 3.21e-23 | 101 |
| Msa1094630 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 1.97e-15 | 77.8 |
| Msa1094630 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 5.17e-19 | 81.3 |
| Msa1094630 | MtrunA17_Chr8g0336061 | 40.217 | 92 | 42 | 1 | 241 | 319 | 12 | 103 | 3.16e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094630 | AT3G12110.1 | 97.613 | 377 | 9 | 0 | 1 | 377 | 1 | 377 | 0.0 | 770 |
| Msa1094630 | AT3G53750.1 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1094630 | AT3G53750.2 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1094630 | AT2G37620.1 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1094630 | AT2G37620.3 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1094630 | AT2G37620.2 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1094630 | AT2G37620.4 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1094630 | AT3G46520.2 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
| Msa1094630 | AT3G46520.1 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
| Msa1094630 | AT5G09810.1 | 95.225 | 377 | 18 | 0 | 1 | 377 | 1 | 377 | 0.0 | 756 |
| Msa1094630 | AT5G59370.2 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 756 |
| Msa1094630 | AT5G59370.1 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 756 |
| Msa1094630 | AT1G49240.1 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa1094630 | AT3G18780.2 | 91.777 | 377 | 31 | 0 | 1 | 377 | 1 | 377 | 0.0 | 742 |
| Msa1094630 | AT3G18780.3 | 91.777 | 377 | 31 | 0 | 1 | 377 | 1 | 377 | 0.0 | 742 |
| Msa1094630 | AT3G18780.1 | 91.643 | 359 | 30 | 0 | 1 | 359 | 1 | 359 | 0.0 | 702 |
| Msa1094630 | AT2G42100.1 | 84.783 | 368 | 56 | 0 | 10 | 377 | 11 | 378 | 0.0 | 677 |
| Msa1094630 | AT2G42090.1 | 70.541 | 370 | 104 | 1 | 7 | 376 | 1 | 365 | 0.0 | 568 |
| Msa1094630 | AT2G42170.1 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 559 |
| Msa1094630 | AT2G42170.3 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 559 |
| Msa1094630 | AT2G42170.4 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa1094630 | AT2G42170.2 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa1094630 | AT2G42170.5 | 78.319 | 226 | 46 | 1 | 152 | 377 | 9 | 231 | 4.83e-132 | 377 |
| Msa1094630 | AT3G27000.1 | 43.536 | 379 | 200 | 3 | 10 | 374 | 7 | 385 | 1.05e-121 | 357 |
| Msa1094630 | AT1G18450.1 | 37.020 | 443 | 209 | 9 | 1 | 376 | 1 | 440 | 1.07e-93 | 287 |
| Msa1094630 | AT1G13180.1 | 34.223 | 412 | 219 | 9 | 10 | 372 | 9 | 417 | 1.14e-72 | 233 |
| Msa1094630 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.09e-67 | 218 |
| Msa1094630 | AT3G33520.1 | 30.879 | 421 | 233 | 7 | 10 | 377 | 5 | 420 | 4.95e-61 | 202 |
| Msa1094630 | AT5G56180.3 | 32.394 | 284 | 167 | 9 | 91 | 358 | 50 | 324 | 6.11e-37 | 137 |
| Msa1094630 | AT5G56180.1 | 32.394 | 284 | 167 | 9 | 91 | 358 | 182 | 456 | 3.44e-36 | 137 |
| Msa1094630 | AT3G12380.2 | 31.008 | 258 | 153 | 9 | 9 | 245 | 21 | 274 | 3.70e-26 | 110 |
| Msa1094630 | AT3G12380.2 | 33.103 | 145 | 93 | 2 | 228 | 368 | 572 | 716 | 4.74e-16 | 80.5 |
| Msa1094630 | AT3G12380.1 | 30.859 | 256 | 150 | 9 | 9 | 245 | 21 | 268 | 1.91e-25 | 108 |
| Msa1094630 | AT3G12380.1 | 33.103 | 145 | 93 | 2 | 228 | 368 | 566 | 710 | 4.99e-16 | 80.1 |
| Msa1094630 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa1094630 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa1094630 | AT5G56180.2 | 33.663 | 202 | 111 | 8 | 91 | 281 | 182 | 371 | 6.24e-21 | 93.6 |
| Msa1094630 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 2.56e-12 | 65.1 |
Find 140 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGGTAACATTGTGCTTTC+AGG | 0.144297 | 7_3:-16600121 | Msa1094630:CDS |
| AAAAGCACTGGGTGTTCTTC+TGG | 0.181767 | 7_3:+16601153 | None:intergenic |
| GCAAATAATAATGAATTTAA+AGG | 0.187995 | 7_3:+16599305 | None:intergenic |
| CATTCTGCGTATGAATTAAC+TGG | 0.215336 | 7_3:-16599163 | Msa1094630:three_prime_UTR |
| GAGGAAATGAAAATGGAAAA+TGG | 0.233782 | 7_3:+16603382 | None:intergenic |
| TGCTATGTATGTTGCTATTC+AGG | 0.269599 | 7_3:-16601055 | Msa1094630:CDS |
| GCAGGTATTGTGTTGGATTC+TGG | 0.277388 | 7_3:-16600556 | Msa1094630:intron |
| CACTTTCTGTGGACAATTGA+TGG | 0.320963 | 7_3:+16599425 | None:intergenic |
| GCTACAAGTTGCAATGCTTC+TGG | 0.324092 | 7_3:+16599331 | None:intergenic |
| AACATGGAATTGTTAGCAAC+TGG | 0.331750 | 7_3:-16601230 | Msa1094630:CDS |
| ACCTTGATCTTCATGCTACT+TGG | 0.331858 | 7_3:+16600037 | None:intergenic |
| CTCATTCTGTCAGCAATGCC+TGG | 0.344924 | 7_3:+16600082 | None:intergenic |
| ATCTTCTCACGATTGGCCTT+AGG | 0.347633 | 7_3:+16601111 | None:intergenic |
| GCTGTGTTTCCCAGCATTGT+AGG | 0.369101 | 7_3:-16601360 | Msa1094630:CDS |
| GAGCAAGGAAATTTCTGCTT+TGG | 0.374975 | 7_3:-16600062 | Msa1094630:CDS |
| GCTTCCATTCCTATCATAGA+TGG | 0.387544 | 7_3:+16600211 | None:intergenic |
| AGGGCATAACCCTCGTAGAT+AGG | 0.389103 | 7_3:+16600511 | None:intergenic |
| CCTTGATCTTCATGCTACTT+GGG | 0.389144 | 7_3:+16600038 | None:intergenic |
| AAAGCACTGGGTGTTCTTCT+GGG | 0.391378 | 7_3:+16601154 | None:intergenic |
| AGGAAATGAAAATGGAAAAT+GGG | 0.391585 | 7_3:+16603383 | None:intergenic |
| CTTGTTTGTGACAATGGAAC+TGG | 0.397675 | 7_3:-16601868 | Msa1094630:CDS |
| CAAATAATAATGAATTTAAA+GGG | 0.399404 | 7_3:+16599306 | None:intergenic |
| CTAACAATTCCATGTTCAAT+GGG | 0.405021 | 7_3:+16601237 | None:intergenic |
| CTGAGAGAAAATACAGTGTC+TGG | 0.408420 | 7_3:-16600003 | Msa1094630:CDS |
| TCTTCTCACGATTGGCCTTA+GGG | 0.411910 | 7_3:+16601112 | None:intergenic |
| GCTAACAATTCCATGTTCAA+TGG | 0.412844 | 7_3:+16601236 | None:intergenic |
| CAAAATCTTCATCAAGAAAT+CGG | 0.413590 | 7_3:+16600444 | None:intergenic |
| TGCCATCCTTCGTCTTGATC+TGG | 0.418422 | 7_3:-16600482 | Msa1094630:CDS |
| CTGGATTGGAGGTTCCATCT+TGG | 0.418962 | 7_3:-16599984 | Msa1094630:CDS |
| CTGTTCCAACCATCTATGAT+AGG | 0.420168 | 7_3:-16600220 | Msa1094630:CDS |
| TGAAGTGCGATGTTGATATC+AGG | 0.420318 | 7_3:-16600153 | Msa1094630:CDS |
| CATGTTATTATTCTAAATGT+TGG | 0.432525 | 7_3:-16599265 | Msa1094630:three_prime_UTR |
| TTGAGTCATCTTCTCACGAT+TGG | 0.438247 | 7_3:+16601104 | None:intergenic |
| ATCTCTTAGCACCTTCCAGC+AGG | 0.441982 | 7_3:-16599960 | Msa1094630:intron |
| CACTGGTGTGATGGTTGGCA+TGG | 0.445024 | 7_3:-16601325 | Msa1094630:CDS |
| CAACCTCTTGTTTGTGACAA+TGG | 0.449997 | 7_3:-16601874 | Msa1094630:CDS |
| CAATGGAACTGGAATGGTTA+AGG | 0.450612 | 7_3:-16601857 | Msa1094630:intron |
| AGAGAAAAGAGGGTTATTGA+AGG | 0.453024 | 7_3:-16599377 | Msa1094630:three_prime_UTR |
| TAAATGTTGGAGTGATTATG+AGG | 0.454835 | 7_3:-16599252 | Msa1094630:three_prime_UTR |
| TCTCTATGCAGGTATTGTGT+TGG | 0.455001 | 7_3:-16600563 | Msa1094630:intron |
| CTACGAATTGCCTGATGGAC+AGG | 0.461381 | 7_3:-16600284 | Msa1094630:CDS |
| AGCAAGAGCTGGAGACAGCC+AGG | 0.471536 | 7_3:-16600330 | Msa1094630:CDS |
| ATGGTGATCACCTGTCCATC+AGG | 0.477697 | 7_3:+16600274 | None:intergenic |
| GGAGCCTCAGTTAAAAGCAC+TGG | 0.477920 | 7_3:+16601141 | None:intergenic |
| AACACGAAGCTCATTGTAGA+AGG | 0.478617 | 7_3:+16601179 | None:intergenic |
| AGAAAATACAGTGTCTGGAT+TGG | 0.479498 | 7_3:-16599998 | Msa1094630:CDS |
| AAGGCAGAATATGATGAATC+TGG | 0.482638 | 7_3:-16599449 | Msa1094630:CDS |
| CTATCATAGATGGTTGGAAC+AGG | 0.482778 | 7_3:+16600221 | None:intergenic |
| ACGCTCTGCTGAGGTGGTAA+AGG | 0.489245 | 7_3:+16600405 | None:intergenic |
| AAATACAGTGTCTGGATTGG+AGG | 0.490757 | 7_3:-16599995 | Msa1094630:CDS |
| ATCCTTCGTCTTGATCTGGC+TGG | 0.494460 | 7_3:-16600478 | Msa1094630:CDS |
| AAGGAAAATGCCGAGGGTGA+TGG | 0.500817 | 7_3:+16603260 | None:intergenic |
| CTTAAATACCCCATTGAACA+TGG | 0.504011 | 7_3:-16601246 | Msa1094630:CDS |
| TGAATAGCAACATACATAGC+AGG | 0.510580 | 7_3:+16601057 | None:intergenic |
| GCTCTTCTCGACGGATGAGC+TGG | 0.511637 | 7_3:+16600306 | None:intergenic |
| ACGAGGACGACCTACAATGC+TGG | 0.512907 | 7_3:+16601350 | None:intergenic |
| GAAGTGAGAGAGAGAGTGTG+TGG | 0.513512 | 7_3:+16603315 | None:intergenic |
| GGGACGACATGGAAAAGATC+TGG | 0.518949 | 7_3:-16601209 | Msa1094630:CDS |
| AGACGAGCGTTTCAGATGTC+CGG | 0.524785 | 7_3:-16600248 | Msa1094630:CDS |
| CTTGATCTTCATGCTACTTG+GGG | 0.525749 | 7_3:+16600039 | None:intergenic |
| GACGAAGGATGGCATGTGGA+AGG | 0.532459 | 7_3:+16600491 | None:intergenic |
| TCTGAAACGCTCGTCTCCGA+TGG | 0.533062 | 7_3:+16600255 | None:intergenic |
| TCCTCGTCACACTGGTGTGA+TGG | 0.533985 | 7_3:-16601334 | Msa1094630:CDS |
| ATTGTGTTGGATTCTGGTGA+TGG | 0.535950 | 7_3:-16600550 | Msa1094630:CDS |
| GTCAGCAATGCCTGGGAACA+TGG | 0.536051 | 7_3:+16600090 | None:intergenic |
| GGGCATAACCCTCGTAGATA+GGG | 0.538631 | 7_3:+16600512 | None:intergenic |
| TCTTTGCCTTCCATCACCCT+CGG | 0.540093 | 7_3:-16603270 | Msa1094630:five_prime_UTR |
| AACAATTTCACGCTCTGCTG+AGG | 0.540758 | 7_3:+16600396 | None:intergenic |
| CCAGCTCTTGCTCATAGTCA+AGG | 0.540763 | 7_3:+16600341 | None:intergenic |
| CTTACCGGTGGTACGACCAC+TGG | 0.540927 | 7_3:+16601014 | None:intergenic |
| GAGAAAAGAGGGTTATTGAA+GGG | 0.541327 | 7_3:-16599376 | Msa1094630:three_prime_UTR |
| AGGGTGATGGAAGGCAAAGA+AGG | 0.543078 | 7_3:+16603273 | None:intergenic |
| CCCAAGTAGCATGAAGATCA+AGG | 0.546192 | 7_3:-16600038 | Msa1094630:CDS |
| CCATTCCTATCATAGATGGT+TGG | 0.552199 | 7_3:+16600215 | None:intergenic |
| CGAGGACGACCTACAATGCT+GGG | 0.552606 | 7_3:+16601351 | None:intergenic |
| GTGATGAGGCACAGTCTAAG+AGG | 0.553165 | 7_3:-16601281 | Msa1094630:CDS |
| AGCCAGATCAAGACGAAGGA+TGG | 0.553433 | 7_3:+16600480 | None:intergenic |
| AAGTGAGAGAGAGAGTGTGT+GGG | 0.555265 | 7_3:+16603316 | None:intergenic |
| ATCAACATCGCACTTCATGA+TGG | 0.558200 | 7_3:+16600159 | None:intergenic |
| ATGATAGGAATGGAAGCAGC+AGG | 0.559211 | 7_3:-16600205 | Msa1094630:CDS |
| CCAACCATCTATGATAGGAA+TGG | 0.569599 | 7_3:-16600215 | Msa1094630:CDS |
| TCATTCTGTCAGCAATGCCT+GGG | 0.569632 | 7_3:+16600083 | None:intergenic |
| GGAGGAACAACCATGTTCCC+AGG | 0.570238 | 7_3:-16600100 | Msa1094630:CDS |
| AAGCACTGGGTGTTCTTCTG+GGG | 0.574143 | 7_3:+16601155 | None:intergenic |
| GAATAGCAACATACATAGCA+GGG | 0.577899 | 7_3:+16601058 | None:intergenic |
| TGATGAGGCACAGTCTAAGA+GGG | 0.579288 | 7_3:-16601280 | Msa1094630:CDS |
| AATTTCACGCTCTGCTGAGG+TGG | 0.580226 | 7_3:+16600399 | None:intergenic |
| CAGCTTAGAAGCACTTTCTG+TGG | 0.581853 | 7_3:+16599414 | None:intergenic |
| TGTTAGCAACTGGGACGACA+TGG | 0.582086 | 7_3:-16601220 | Msa1094630:CDS |
| ATTCTGCGTATGAATTAACT+GGG | 0.585793 | 7_3:-16599162 | Msa1094630:three_prime_UTR |
| CGATTGGCCTTAGGGTTGAG+AGG | 0.589725 | 7_3:+16601120 | None:intergenic |
| ACGAAGGATGGCATGTGGAA+GGG | 0.591719 | 7_3:+16600492 | None:intergenic |
| GGTGCTAAGAGATGCCAAGA+TGG | 0.593241 | 7_3:+16599970 | None:intergenic |
| GATGGTTGGAACAGGACCTC+CGG | 0.593491 | 7_3:+16600229 | None:intergenic |
| AAGAGCTACGAATTGCCTGA+TGG | 0.595436 | 7_3:-16600289 | Msa1094630:CDS |
| TGAGGCTCCTCTCAACCCTA+AGG | 0.595543 | 7_3:-16601127 | Msa1094630:CDS |
| CGTCACACTGGTGTGATGGT+TGG | 0.597543 | 7_3:-16601330 | Msa1094630:CDS |
| ACTGGTGTGATGGTTGGCAT+GGG | 0.600381 | 7_3:-16601324 | Msa1094630:CDS |
| GATATCAGGAAAGACTTGTA+CGG | 0.601211 | 7_3:-16600139 | Msa1094630:CDS |
| GATGGACAGGTGATCACCAT+CGG | 0.601892 | 7_3:-16600271 | Msa1094630:CDS |
| TACGCCAGTGGTCGTACCAC+CGG | 0.602745 | 7_3:-16601018 | Msa1094630:intron |
| TTGTGACAATGGAACTGGAA+TGG | 0.606936 | 7_3:-16601863 | Msa1094630:CDS |
| CAGCTCTTGCTCATAGTCAA+GGG | 0.607358 | 7_3:+16600342 | None:intergenic |
| CCTTGACTATGAGCAAGAGC+TGG | 0.608691 | 7_3:-16600341 | Msa1094630:CDS |
| GTTCCATTGTCACAAACAAG+AGG | 0.610975 | 7_3:+16601871 | None:intergenic |
| TCTTCATCAAGAAATCGGTA+AGG | 0.614013 | 7_3:+16600449 | None:intergenic |
| ACATGGAATTGTTAGCAACT+GGG | 0.615052 | 7_3:-16601229 | Msa1094630:CDS |
| AACAAAACAAACCTGCTGGA+AGG | 0.616042 | 7_3:+16599949 | None:intergenic |
| GAGCCTCAGTTAAAAGCACT+GGG | 0.616759 | 7_3:+16601142 | None:intergenic |
| CTTCATGATGGAGTTGTATG+TGG | 0.618935 | 7_3:+16600171 | None:intergenic |
| CATTGCTGACAGAATGAGCA+AGG | 0.623432 | 7_3:-16600077 | Msa1094630:CDS |
| ATGCTGGGAAACACAGCACG+AGG | 0.626971 | 7_3:+16601366 | None:intergenic |
| GTAGGTCGTCCTCGTCACAC+TGG | 0.629317 | 7_3:-16601342 | Msa1094630:CDS |
| GGTAACATTGTGCTTTCAGG+AGG | 0.633227 | 7_3:-16600118 | Msa1094630:CDS |
| GCTGGGAAACACAGCACGAG+GGG | 0.634384 | 7_3:+16601368 | None:intergenic |
| GTTCTTTCACTGTACGCCAG+TGG | 0.634859 | 7_3:-16601030 | Msa1094630:CDS |
| AGAAACATATACCTTTGGGA+AGG | 0.635373 | 7_3:+16603241 | None:intergenic |
| AAAATGCCGAGGGTGATGGA+AGG | 0.638138 | 7_3:+16603264 | None:intergenic |
| AGTGCAGATGTGGATTGCAA+AGG | 0.639590 | 7_3:-16599468 | Msa1094630:intron |
| TGCTGGGAAACACAGCACGA+GGG | 0.642727 | 7_3:+16601367 | None:intergenic |
| CTTTGGGAAGGAAAATGCCG+AGG | 0.647515 | 7_3:+16603253 | None:intergenic |
| ATAGTAGACGATGGCAGACG+CGG | 0.649764 | 7_3:-16601905 | Msa1094630:exon |
| GTAGACGATGGCAGACGCGG+AGG | 0.650281 | 7_3:-16601902 | Msa1094630:exon |
| TTTGGGAAGGAAAATGCCGA+GGG | 0.653422 | 7_3:+16603254 | None:intergenic |
| ACTGGCGTACAGTGAAAGAA+CGG | 0.656927 | 7_3:+16601032 | None:intergenic |
| TCAAGACGAAGGATGGCATG+TGG | 0.658783 | 7_3:+16600487 | None:intergenic |
| ACCATCACACCAGTGTGACG+AGG | 0.660573 | 7_3:+16601333 | None:intergenic |
| AGATGCATATGTTGGTGATG+AGG | 0.661651 | 7_3:-16601295 | Msa1094630:CDS |
| CAATTCGTAGCTCTTCTCGA+CGG | 0.674512 | 7_3:+16600297 | None:intergenic |
| CCACACTGTCCCTATCTACG+AGG | 0.675862 | 7_3:-16600521 | Msa1094630:CDS |
| GACCAGCCAGATCAAGACGA+AGG | 0.686380 | 7_3:+16600476 | None:intergenic |
| AATAGCAACATACATAGCAG+GGG | 0.691158 | 7_3:+16601059 | None:intergenic |
| CCTCGTAGATAGGGACAGTG+TGG | 0.692535 | 7_3:+16600521 | None:intergenic |
| CACACTGTCCCTATCTACGA+GGG | 0.693439 | 7_3:-16600520 | Msa1094630:CDS |
| CGAGCGTTTCAGATGTCCGG+AGG | 0.696555 | 7_3:-16600245 | Msa1094630:CDS |
| GATGAGGCACAGTCTAAGAG+GGG | 0.706688 | 7_3:-16601279 | Msa1094630:CDS |
| TAACAATTCCATGTTCAATG+GGG | 0.707657 | 7_3:+16601238 | None:intergenic |
| ATCCTGCAGATAGTAGACGA+TGG | 0.720254 | 7_3:-16601914 | Msa1094630:intron |
| GAAGGAGAGAAAATGCACAG+AGG | 0.737959 | 7_3:+16603291 | None:intergenic |
| AAGTAGCATGAAGATCAAGG+TGG | 0.766332 | 7_3:-16600035 | Msa1094630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATATATAATGTTATTATA+TGG | - | chr7_3:16602574-16602593 | Msa1094630:intron | 10.0% |
| !! | CAAATAATAATGAATTTAAA+GGG | + | chr7_3:16603174-16603193 | None:intergenic | 10.0% |
| !!! | AAAAAAGAAACAATTTTGAT+TGG | - | chr7_3:16599825-16599844 | Msa1094630:intron | 15.0% |
| !! | TTAAGATTCTTTATAGTTAA+TGG | - | chr7_3:16599878-16599897 | Msa1094630:intron | 15.0% |
| !!! | AAAATTGTTTTTAACATGTT+TGG | - | chr7_3:16600277-16600296 | Msa1094630:CDS | 15.0% |
| !!! | TTTAATTTGAAACTAGAATT+TGG | - | chr7_3:16600339-16600358 | Msa1094630:CDS | 15.0% |
| !! | CTTTATAATCAATAAATTCT+CGG | - | chr7_3:16600429-16600448 | Msa1094630:CDS | 15.0% |
| !!! | AAAAATGATCTTATAGTTTT+TGG | - | chr7_3:16600646-16600665 | Msa1094630:intron | 15.0% |
| !!! | TATTAGCTTATAATTTTGTT+AGG | - | chr7_3:16600859-16600878 | Msa1094630:intron | 15.0% |
| !!! | GATTAGATTTTTTATTATGT+GGG | - | chr7_3:16601503-16601522 | Msa1094630:intron | 15.0% |
| !! | AATACAAAGCAAAAAAATTT+AGG | + | chr7_3:16601750-16601769 | None:intergenic | 15.0% |
| !!! | TTTATAAATTCCAAGTTTTA+GGG | + | chr7_3:16602615-16602634 | None:intergenic | 15.0% |
| !!! | TTTTATAAATTCCAAGTTTT+AGG | + | chr7_3:16602616-16602635 | None:intergenic | 15.0% |
| !!! | ATTGAGAATTTTCAAATTTA+GGG | + | chr7_3:16602643-16602662 | None:intergenic | 15.0% |
| !!! | AAAACTTAATAAGCTATTTT+TGG | - | chr7_3:16602734-16602753 | Msa1094630:intron | 15.0% |
| !! | GCAAATAATAATGAATTTAA+AGG | + | chr7_3:16603175-16603194 | None:intergenic | 15.0% |
| !!! | TAAAATTGTTCTGTTATTTT+CGG | - | chr7_3:16603258-16603277 | Msa1094630:five_prime_UTR | 15.0% |
| !!! | GATTTTATTTGTTGTTGATT+AGG | - | chr7_3:16599318-16599337 | Msa1094630:three_prime_UTR | 20.0% |
| !!! | TGTTTCTAAATTTGATTGAA+TGG | - | chr7_3:16599444-16599463 | Msa1094630:CDS | 20.0% |
| !!! | TAATAGTATTGAATTTGAGT+TGG | - | chr7_3:16599610-16599629 | Msa1094630:intron | 20.0% |
| !!! | TTGATTAGTTAGATTTCAAA+TGG | - | chr7_3:16599663-16599682 | Msa1094630:intron | 20.0% |
| !!! | TGATTAGTTAGATTTCAAAT+GGG | - | chr7_3:16599664-16599683 | Msa1094630:intron | 20.0% |
| !! | GAAAACTTTATCATATACAA+CGG | + | chr7_3:16599713-16599732 | None:intergenic | 20.0% |
| !!! | ATAAAGTTTTCATTTTTGAG+AGG | - | chr7_3:16599722-16599741 | Msa1094630:intron | 20.0% |
| !!! | AAACAAAATAGTTTGTAGTT+AGG | + | chr7_3:16600202-16600221 | None:intergenic | 20.0% |
| !!! | TTTGAGGCTAAAAAATAATT+TGG | + | chr7_3:16600377-16600396 | None:intergenic | 20.0% |
| !! | AAGTTTAGGTAATAATTCAT+TGG | + | chr7_3:16600734-16600753 | None:intergenic | 20.0% |
| !!! | CGATTAGATTTTTTATTATG+TGG | - | chr7_3:16601502-16601521 | Msa1094630:intron | 20.0% |
| !! | AAATGTTGTTAGAAAGTAAA+CGG | - | chr7_3:16601722-16601741 | Msa1094630:intron | 20.0% |
| !!! | TTATAAATTCCAAGTTTTAG+GGG | + | chr7_3:16602614-16602633 | None:intergenic | 20.0% |
| !!! | GATTGAGAATTTTCAAATTT+AGG | + | chr7_3:16602644-16602663 | None:intergenic | 20.0% |
| !! | CTTATACATAAGCATTTATA+TGG | - | chr7_3:16602857-16602876 | Msa1094630:intron | 20.0% |
| !! | ATTAAGCTATTTATTCAAAG+AGG | - | chr7_3:16602904-16602923 | Msa1094630:intron | 20.0% |
| !! | TTAAGCTATTTATTCAAAGA+GGG | - | chr7_3:16602905-16602924 | Msa1094630:intron | 20.0% |
| !! | CATGTTATTATTCTAAATGT+TGG | - | chr7_3:16603212-16603231 | Msa1094630:intron | 20.0% |
| ! | AGGAAATGAAAATGGAAAAT+GGG | + | chr7_3:16599097-16599116 | None:intergenic | 25.0% |
| ! | CAAAAAAGAGGAAATGAAAA+TGG | + | chr7_3:16599105-16599124 | None:intergenic | 25.0% |
| ! | GAAAAGAAACATATACCTTT+GGG | + | chr7_3:16599243-16599262 | None:intergenic | 25.0% |
| ! | TGAAAAGAAACATATACCTT+TGG | + | chr7_3:16599244-16599263 | None:intergenic | 25.0% |
| ! | TTGATTAGGTAGATTTGAAA+TGG | - | chr7_3:16599332-16599351 | Msa1094630:three_prime_UTR | 25.0% |
| !! | TGATTAGGTAGATTTGAAAT+GGG | - | chr7_3:16599333-16599352 | Msa1094630:three_prime_UTR | 25.0% |
| !!! | GGTTTTATTTGTTCTTGATT+AGG | - | chr7_3:16599480-16599499 | Msa1094630:intron | 25.0% |
| ! | TTGATTAGGTAGATTTGAAA+TGG | - | chr7_3:16599332-16599351 | Msa1094630:three_prime_UTR | 25.0% |
| !! | TGATTAGGTAGATTTGAAAT+GGG | - | chr7_3:16599333-16599352 | Msa1094630:three_prime_UTR | 25.0% |
| !!! | TCATTTTTACCCTTTTTTGT+TGG | - | chr7_3:16599562-16599581 | Msa1094630:intron | 25.0% |
| ! | TTATCCAAACCAACAAAAAA+GGG | + | chr7_3:16599574-16599593 | None:intergenic | 25.0% |
| ! | TTTATCCAAACCAACAAAAA+AGG | + | chr7_3:16599575-16599594 | None:intergenic | 25.0% |
| !!! | TCATTTTAATTGATCGATCT+AGG | - | chr7_3:16599779-16599798 | Msa1094630:intron | 25.0% |
| ! | ATCTAGGTGTTTGTTTAATT+TGG | - | chr7_3:16599795-16599814 | Msa1094630:intron | 25.0% |
| ! | AAGAATCTTAAAAACATTGC+TGG | + | chr7_3:16599869-16599888 | None:intergenic | 25.0% |
| ! | TTCTTTATAGTTAATGGAGA+TGG | - | chr7_3:16599884-16599903 | Msa1094630:intron | 25.0% |
| ! | CAATTATTTAGCGATATTTG+AGG | - | chr7_3:16600067-16600086 | Msa1094630:CDS | 25.0% |
| ! | TTGAGGTAAAAAGTGAAATT+TGG | - | chr7_3:16600084-16600103 | Msa1094630:CDS | 25.0% |
| ! | TAATCAACTAGGTGTATATT+TGG | - | chr7_3:16600235-16600254 | Msa1094630:CDS | 25.0% |
| !! | TGAGTTGAACAATTAATTTG+AGG | + | chr7_3:16600393-16600412 | None:intergenic | 25.0% |
| !!! | GGTTTCAGAAAATTGTTTTT+TGG | - | chr7_3:16600450-16600469 | Msa1094630:CDS | 25.0% |
| !!! | CTTTTGTTTTTGTCAACTTT+GGG | - | chr7_3:16600770-16600789 | Msa1094630:intron | 25.0% |
| ! | GCAATTAAAAAATGACTTAC+CGG | + | chr7_3:16601481-16601500 | None:intergenic | 25.0% |
| ! | AATGTTGTTAGAAAGTAAAC+GGG | - | chr7_3:16601723-16601742 | Msa1094630:intron | 25.0% |
| ! | CAATGACTGTTAAAATGAAT+AGG | - | chr7_3:16601779-16601798 | Msa1094630:intron | 25.0% |
| ! | CAAAATCTTCATCAAGAAAT+CGG | + | chr7_3:16602036-16602055 | None:intergenic | 25.0% |
| ! | AGAAAAAAGAGAAACAAGAA+AGG | + | chr7_3:16602554-16602573 | None:intergenic | 25.0% |
| ! | ATTATATGGCATAGTTAACT+AGG | - | chr7_3:16602588-16602607 | Msa1094630:intron | 25.0% |
| ! | CTTATTTCCATAAGTTATCT+AGG | - | chr7_3:16602757-16602776 | Msa1094630:intron | 25.0% |
| ! | TTCTATCATATTAGTCCATT+TGG | + | chr7_3:16602945-16602964 | None:intergenic | 25.0% |
| !!! | AAATGGACTAATATGATAGA+AGG | - | chr7_3:16602944-16602963 | Msa1094630:intron | 25.0% |
| GAGGAAATGAAAATGGAAAA+TGG | + | chr7_3:16599098-16599117 | None:intergenic | 30.0% | |
| GAGTCTAACAAACAAAAAAG+AGG | + | chr7_3:16599117-16599136 | None:intergenic | 30.0% | |
| ! | TTGAATGGTGTTCTTGATTT+TGG | - | chr7_3:16599459-16599478 | Msa1094630:CDS | 30.0% |
| !!! | TTTACCCTTTTTTGTTGGTT+TGG | - | chr7_3:16599567-16599586 | Msa1094630:intron | 30.0% |
| !! | GGTGTTTGTTTAATTTGGAA+AGG | - | chr7_3:16599800-16599819 | Msa1094630:intron | 30.0% |
| AGGTAAAAAGTGAAATTTGG+TGG | - | chr7_3:16600087-16600106 | Msa1094630:CDS | 30.0% | |
| AGAAAGAATAGATTCCGAAA+AGG | - | chr7_3:16600127-16600146 | Msa1094630:CDS | 30.0% | |
| ! | GCATTATGGTATTTCCTTTT+CGG | + | chr7_3:16600144-16600163 | None:intergenic | 30.0% |
| !!! | TACCATAATGCTTTGTTTTG+TGG | - | chr7_3:16600153-16600172 | Msa1094630:CDS | 30.0% |
| TAGTGCATGTTTAATCAACT+AGG | - | chr7_3:16600224-16600243 | Msa1094630:CDS | 30.0% | |
| !!! | TTTGGTTTTACATTTGCATG+AGG | - | chr7_3:16600253-16600272 | Msa1094630:CDS | 30.0% |
| TGGATGTGTTCGAATAATAT+TGG | - | chr7_3:16600297-16600316 | Msa1094630:CDS | 30.0% | |
| TTGGATTGATATAGTAAGTG+AGG | - | chr7_3:16600469-16600488 | Msa1094630:CDS | 30.0% | |
| !!! | TGATCTTATAGTTTTTGGCA+TGG | - | chr7_3:16600651-16600670 | Msa1094630:intron | 30.0% |
| AGTTGACAAAAACAAAAGGT+GGG | + | chr7_3:16600768-16600787 | None:intergenic | 30.0% | |
| AAGTTGACAAAAACAAAAGG+TGG | + | chr7_3:16600769-16600788 | None:intergenic | 30.0% | |
| CCAAAGTTGACAAAAACAAA+AGG | + | chr7_3:16600772-16600791 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTTTTTGTCAACTT+TGG | - | chr7_3:16600769-16600788 | Msa1094630:intron | 30.0% |
| GATTCTCGATTTAATAACCA+TGG | - | chr7_3:16600938-16600957 | Msa1094630:intron | 30.0% | |
| AAACTTAATGCTATCAACCA+TGG | + | chr7_3:16600958-16600977 | None:intergenic | 30.0% | |
| TCATAATGCAGTACTTTAGT+TGG | - | chr7_3:16600991-16601010 | Msa1094630:intron | 30.0% | |
| ! | CCATTTTCTCAAACTCAATT+AGG | + | chr7_3:16601047-16601066 | None:intergenic | 30.0% |
| CCTAATTGAGTTTGAGAAAA+TGG | - | chr7_3:16601044-16601063 | Msa1094630:CDS | 30.0% | |
| ! | GGATTCTGATTTATCTTTTC+AGG | - | chr7_3:16601065-16601084 | Msa1094630:CDS | 30.0% |
| TAACAATTCCATGTTCAATG+GGG | + | chr7_3:16601242-16601261 | None:intergenic | 30.0% | |
| CTAACAATTCCATGTTCAAT+GGG | + | chr7_3:16601243-16601262 | None:intergenic | 30.0% | |
| ATTAAAAAATGACTTACCGG+TGG | + | chr7_3:16601478-16601497 | None:intergenic | 30.0% | |
| ! | AACTAGAGAGAATGCATTTT+CGG | + | chr7_3:16601613-16601632 | None:intergenic | 30.0% |
| ! | ATTTTCCTTTTCGATTGTGA+TGG | + | chr7_3:16601650-16601669 | None:intergenic | 30.0% |
| ! | TATATTTTCTGTCTCTATGC+AGG | - | chr7_3:16601903-16601922 | Msa1094630:exon | 30.0% |
| !! | TCCATTTGGATTAGTCATTT+AGG | + | chr7_3:16602931-16602950 | None:intergenic | 30.0% |
| !!! | TACTGTTTTGAGAGAAAAGA+GGG | - | chr7_3:16603090-16603109 | Msa1094630:intron | 30.0% |
| TAAATGTTGGAGTGATTATG+AGG | - | chr7_3:16603225-16603244 | Msa1094630:intron | 30.0% | |
| ATTCTGCGTATGAATTAACT+GGG | - | chr7_3:16603315-16603334 | Msa1094630:five_prime_UTR | 30.0% | |
| ! | TTTTGCATACATATCAAACG+TGG | + | chr7_3:16603353-16603372 | None:intergenic | 30.0% |
| ! | AGAAACATATACCTTTGGGA+AGG | + | chr7_3:16599239-16599258 | None:intergenic | 35.0% |
| GGATCTATCATTGTTAAGCT+TGG | - | chr7_3:16599905-16599924 | Msa1094630:intron | 35.0% | |
| ! | GTCCACAAAACAAAGCATTA+TGG | + | chr7_3:16600158-16600177 | None:intergenic | 35.0% |
| ! | TAGTTTGTAGTTAGGAGAGT+GGG | + | chr7_3:16600194-16600213 | None:intergenic | 35.0% |
| ! | ATAGTTTGTAGTTAGGAGAG+TGG | + | chr7_3:16600195-16600214 | None:intergenic | 35.0% |
| TGATATAGTAAGTGAGGTAG+TGG | - | chr7_3:16600475-16600494 | Msa1094630:CDS | 35.0% | |
| !! | AACTTAGTTGGCCTTGTTTA+TGG | - | chr7_3:16600507-16600526 | Msa1094630:CDS | 35.0% |
| !! | TCTGATTTATCTTTTCAGGC+TGG | - | chr7_3:16601069-16601088 | Msa1094630:CDS | 35.0% |
| GGTCAAAAAGATGCATATGT+TGG | - | chr7_3:16601174-16601193 | Msa1094630:CDS | 35.0% | |
| CTTAAATACCCCATTGAACA+TGG | - | chr7_3:16601231-16601250 | Msa1094630:CDS | 35.0% | |
| GCTAACAATTCCATGTTCAA+TGG | + | chr7_3:16601244-16601263 | None:intergenic | 35.0% | |
| AACATGGAATTGTTAGCAAC+TGG | - | chr7_3:16601247-16601266 | Msa1094630:CDS | 35.0% | |
| ACATGGAATTGTTAGCAACT+GGG | - | chr7_3:16601248-16601267 | Msa1094630:CDS | 35.0% | |
| AATAGCAACATACATAGCAG+GGG | + | chr7_3:16601421-16601440 | None:intergenic | 35.0% | |
| GAATAGCAACATACATAGCA+GGG | + | chr7_3:16601422-16601441 | None:intergenic | 35.0% | |
| TGAATAGCAACATACATAGC+AGG | + | chr7_3:16601423-16601442 | None:intergenic | 35.0% | |
| ! | TGCTATGTATGTTGCTATTC+AGG | - | chr7_3:16601422-16601441 | Msa1094630:intron | 35.0% |
| ATTCTCCATCACAATCGAAA+AGG | - | chr7_3:16601642-16601661 | Msa1094630:intron | 35.0% | |
| ! | CAAGTTTCACATAGTTTGTC+TGG | + | chr7_3:16601695-16601714 | None:intergenic | 35.0% |
| TCTTCATCAAGAAATCGGTA+AGG | + | chr7_3:16602031-16602050 | None:intergenic | 35.0% | |
| !!! | ATGAAGATTTTGACTGAACG+TGG | - | chr7_3:16602044-16602063 | Msa1094630:intron | 35.0% |
| GATATCAGGAAAGACTTGTA+CGG | - | chr7_3:16602338-16602357 | Msa1094630:intron | 35.0% | |
| AGAAAATACAGTGTCTGGAT+TGG | - | chr7_3:16602479-16602498 | Msa1094630:intron | 35.0% | |
| TTATCTGACATAAGCTCTCT+AGG | - | chr7_3:16602698-16602717 | Msa1094630:intron | 35.0% | |
| !! | AAGCTCTCTAGGATAACTTA+TGG | - | chr7_3:16602709-16602728 | Msa1094630:intron | 35.0% |
| AAGCTGTCCTAGATAACTTA+TGG | + | chr7_3:16602767-16602786 | None:intergenic | 35.0% | |
| GCCTAAATGACTAATCCAAA+TGG | - | chr7_3:16602927-16602946 | Msa1094630:intron | 35.0% | |
| AAGGCAGAATATGATGAATC+TGG | - | chr7_3:16603028-16603047 | Msa1094630:intron | 35.0% | |
| !!! | CTACTGTTTTGAGAGAAAAG+AGG | - | chr7_3:16603089-16603108 | Msa1094630:intron | 35.0% |
| AGAGAAAAGAGGGTTATTGA+AGG | - | chr7_3:16603100-16603119 | Msa1094630:intron | 35.0% | |
| GAGAAAAGAGGGTTATTGAA+GGG | - | chr7_3:16603101-16603120 | Msa1094630:intron | 35.0% | |
| CATTCTGCGTATGAATTAAC+TGG | - | chr7_3:16603314-16603333 | Msa1094630:five_prime_UTR | 35.0% | |
| ! | TATAGTAAGTGAGGTAGTGG+AGG | - | chr7_3:16600478-16600497 | Msa1094630:CDS | 40.0% |
| !! | ATAGTAAGTGAGGTAGTGGA+GGG | - | chr7_3:16600479-16600498 | Msa1094630:CDS | 40.0% |
| !! | GTGTGCTGTTTCCATAAACA+AGG | + | chr7_3:16600521-16600540 | None:intergenic | 40.0% |
| ! | CAACCTCTTGTTTGTGACAA+TGG | - | chr7_3:16600603-16600622 | Msa1094630:intron | 40.0% |
| GTTCCATTGTCACAAACAAG+AGG | + | chr7_3:16600609-16600628 | None:intergenic | 40.0% | |
| CTTGTTTGTGACAATGGAAC+TGG | - | chr7_3:16600609-16600628 | Msa1094630:intron | 40.0% | |
| TTGTGACAATGGAACTGGAA+TGG | - | chr7_3:16600614-16600633 | Msa1094630:intron | 40.0% | |
| CAATGGAACTGGAATGGTTA+AGG | - | chr7_3:16600620-16600639 | Msa1094630:intron | 40.0% | |
| GGGTTGGATACACTAAGTTT+AGG | + | chr7_3:16600748-16600767 | None:intergenic | 40.0% | |
| GACAAAAACAAAAGGTGGGT+TGG | + | chr7_3:16600764-16600783 | None:intergenic | 40.0% | |
| !! | AGATGCATATGTTGGTGATG+AGG | - | chr7_3:16601182-16601201 | Msa1094630:CDS | 40.0% |
| AACACGAAGCTCATTGTAGA+AGG | + | chr7_3:16601301-16601320 | None:intergenic | 40.0% | |
| TTGAGTCATCTTCTCACGAT+TGG | + | chr7_3:16601376-16601395 | None:intergenic | 40.0% | |
| ! | TTTCACATAGTTTGTCTGGC+TGG | + | chr7_3:16601691-16601710 | None:intergenic | 40.0% |
| AAGTAGCTTCTGTGAGAACT+AGG | - | chr7_3:16601805-16601824 | Msa1094630:intron | 40.0% | |
| ! | TCTCTATGCAGGTATTGTGT+TGG | - | chr7_3:16601914-16601933 | Msa1094630:intron | 40.0% |
| ATTGTGTTGGATTCTGGTGA+TGG | - | chr7_3:16601927-16601946 | Msa1094630:intron | 40.0% | |
| CTATCATAGATGGTTGGAAC+AGG | + | chr7_3:16602259-16602278 | None:intergenic | 40.0% | |
| CTGTTCCAACCATCTATGAT+AGG | - | chr7_3:16602257-16602276 | Msa1094630:intron | 40.0% | |
| CCATTCCTATCATAGATGGT+TGG | + | chr7_3:16602265-16602284 | None:intergenic | 40.0% | |
| CCAACCATCTATGATAGGAA+TGG | - | chr7_3:16602262-16602281 | Msa1094630:intron | 40.0% | |
| GCTTCCATTCCTATCATAGA+TGG | + | chr7_3:16602269-16602288 | None:intergenic | 40.0% | |
| ! | CTTCATGATGGAGTTGTATG+TGG | + | chr7_3:16602309-16602328 | None:intergenic | 40.0% |
| ATCAACATCGCACTTCATGA+TGG | + | chr7_3:16602321-16602340 | None:intergenic | 40.0% | |
| TGAAGTGCGATGTTGATATC+AGG | - | chr7_3:16602324-16602343 | Msa1094630:intron | 40.0% | |
| TACGGTAACATTGTGCTTTC+AGG | - | chr7_3:16602356-16602375 | Msa1094630:intron | 40.0% | |
| GAGCAAGGAAATTTCTGCTT+TGG | - | chr7_3:16602415-16602434 | Msa1094630:intron | 40.0% | |
| ! | CTTGATCTTCATGCTACTTG+GGG | + | chr7_3:16602441-16602460 | None:intergenic | 40.0% |
| ! | CCTTGATCTTCATGCTACTT+GGG | + | chr7_3:16602442-16602461 | None:intergenic | 40.0% |
| ACCTTGATCTTCATGCTACT+TGG | + | chr7_3:16602443-16602462 | None:intergenic | 40.0% | |
| AAGTAGCATGAAGATCAAGG+TGG | - | chr7_3:16602442-16602461 | Msa1094630:intron | 40.0% | |
| ! | ACACTGTATTTTCTCTCAGG+TGG | + | chr7_3:16602473-16602492 | None:intergenic | 40.0% |
| ! | CAGACACTGTATTTTCTCTC+AGG | + | chr7_3:16602476-16602495 | None:intergenic | 40.0% |
| CTGAGAGAAAATACAGTGTC+TGG | - | chr7_3:16602474-16602493 | Msa1094630:intron | 40.0% | |
| ! | AAATACAGTGTCTGGATTGG+AGG | - | chr7_3:16602482-16602501 | Msa1094630:intron | 40.0% |
| AACAAAACAAACCTGCTGGA+AGG | + | chr7_3:16602531-16602550 | None:intergenic | 40.0% | |
| AAGGAACAAAACAAACCTGC+TGG | + | chr7_3:16602535-16602554 | None:intergenic | 40.0% | |
| TTAACTAGGCCCCTAAAACT+TGG | - | chr7_3:16602602-16602621 | Msa1094630:intron | 40.0% | |
| ! | TTTTCTTACGAGTGCAGATG+TGG | - | chr7_3:16602999-16603018 | Msa1094630:intron | 40.0% |
| CACTTTCTGTGGACAATTGA+TGG | + | chr7_3:16603055-16603074 | None:intergenic | 40.0% | |
| ! | AAGTGAGAGAGAGAGTGTGT+GGG | + | chr7_3:16599164-16599183 | None:intergenic | 45.0% |
| GAAGGAGAGAAAATGCACAG+AGG | + | chr7_3:16599189-16599208 | None:intergenic | 45.0% | |
| TTTGGGAAGGAAAATGCCGA+GGG | + | chr7_3:16599226-16599245 | None:intergenic | 45.0% | |
| GAGAGTGGGAAAACACGAAA+GGG | + | chr7_3:16600180-16600199 | None:intergenic | 45.0% | |
| !! | TAGTAAGTGAGGTAGTGGAG+GGG | - | chr7_3:16600480-16600499 | Msa1094630:CDS | 45.0% |
| TGGAGGGGAGAAAACTTAGT+TGG | - | chr7_3:16600495-16600514 | Msa1094630:CDS | 45.0% | |
| ATCCTGCAGATAGTAGACGA+TGG | - | chr7_3:16600563-16600582 | Msa1094630:intron | 45.0% | |
| !! | TCTTTTCAGGCTGGATTTGC+TGG | - | chr7_3:16601078-16601097 | Msa1094630:CDS | 45.0% |
| TGATGAGGCACAGTCTAAGA+GGG | - | chr7_3:16601197-16601216 | Msa1094630:CDS | 45.0% | |
| !! | AAAGCACTGGGTGTTCTTCT+GGG | + | chr7_3:16601326-16601345 | None:intergenic | 45.0% |
| !! | AAAAGCACTGGGTGTTCTTC+TGG | + | chr7_3:16601327-16601346 | None:intergenic | 45.0% |
| !! | ACACCCAGTGCTTTTAACTG+AGG | - | chr7_3:16601332-16601351 | Msa1094630:CDS | 45.0% |
| !! | GAGCCTCAGTTAAAAGCACT+GGG | + | chr7_3:16601338-16601357 | None:intergenic | 45.0% |
| !! | TCTTCTCACGATTGGCCTTA+GGG | + | chr7_3:16601368-16601387 | None:intergenic | 45.0% |
| !! | ATCTTCTCACGATTGGCCTT+AGG | + | chr7_3:16601369-16601388 | None:intergenic | 45.0% |
| ACTGGCGTACAGTGAAAGAA+CGG | + | chr7_3:16601448-16601467 | None:intergenic | 45.0% | |
| TGTCTGGCTGGAATGACATT+TGG | + | chr7_3:16601679-16601698 | None:intergenic | 45.0% | |
| ! | GCAGGTATTGTGTTGGATTC+TGG | - | chr7_3:16601921-16601940 | Msa1094630:intron | 45.0% |
| AACAATTTCACGCTCTGCTG+AGG | + | chr7_3:16602084-16602103 | None:intergenic | 45.0% | |
| CAGCTCTTGCTCATAGTCAA+GGG | + | chr7_3:16602138-16602157 | None:intergenic | 45.0% | |
| CAATTCGTAGCTCTTCTCGA+CGG | + | chr7_3:16602183-16602202 | None:intergenic | 45.0% | |
| AAGAGCTACGAATTGCCTGA+TGG | - | chr7_3:16602188-16602207 | Msa1094630:intron | 45.0% | |
| ATGATAGGAATGGAAGCAGC+AGG | - | chr7_3:16602272-16602291 | Msa1094630:intron | 45.0% | |
| GGTAACATTGTGCTTTCAGG+AGG | - | chr7_3:16602359-16602378 | Msa1094630:intron | 45.0% | |
| TCATTCTGTCAGCAATGCCT+GGG | + | chr7_3:16602397-16602416 | None:intergenic | 45.0% | |
| CATTGCTGACAGAATGAGCA+AGG | - | chr7_3:16602400-16602419 | Msa1094630:intron | 45.0% | |
| CCCAAGTAGCATGAAGATCA+AGG | - | chr7_3:16602439-16602458 | Msa1094630:intron | 45.0% | |
| ! | AGTGCAGATGTGGATTGCAA+AGG | - | chr7_3:16603009-16603028 | Msa1094630:intron | 45.0% |
| !! | CAGCTTAGAAGCACTTTCTG+TGG | + | chr7_3:16603066-16603085 | None:intergenic | 45.0% |
| GCTACAAGTTGCAATGCTTC+TGG | + | chr7_3:16603149-16603168 | None:intergenic | 45.0% | |
| !!! | TATCAATTTTTATTTTTATT+TGG | - | chr7_3:16599755-16599774 | Msa1094630:intron | 5.0% |
| !!! | ATCAATTTTTATTTTTATTT+GGG | - | chr7_3:16599756-16599775 | Msa1094630:intron | 5.0% |
| ! | GAAGTGAGAGAGAGAGTGTG+TGG | + | chr7_3:16599165-16599184 | None:intergenic | 50.0% |
| !! | AGGGTGATGGAAGGCAAAGA+AGG | + | chr7_3:16599207-16599226 | None:intergenic | 50.0% |
| TCTTTGCCTTCCATCACCCT+CGG | - | chr7_3:16599207-16599226 | Msa1094630:three_prime_UTR | 50.0% | |
| !! | AAAATGCCGAGGGTGATGGA+AGG | + | chr7_3:16599216-16599235 | None:intergenic | 50.0% |
| AAGGAAAATGCCGAGGGTGA+TGG | + | chr7_3:16599220-16599239 | None:intergenic | 50.0% | |
| ! | CTTTGGGAAGGAAAATGCCG+AGG | + | chr7_3:16599227-16599246 | None:intergenic | 50.0% |
| ! | CTCGGCATTTTCCTTCCCAA+AGG | - | chr7_3:16599225-16599244 | Msa1094630:three_prime_UTR | 50.0% |
| GGAGAGTGGGAAAACACGAA+AGG | + | chr7_3:16600181-16600200 | None:intergenic | 50.0% | |
| TGCCATCGTCTACTATCTGC+AGG | + | chr7_3:16600568-16600587 | None:intergenic | 50.0% | |
| ATAGTAGACGATGGCAGACG+CGG | - | chr7_3:16600572-16600591 | Msa1094630:intron | 50.0% | |
| GCTGTGTTTCCCAGCATTGT+AGG | - | chr7_3:16601117-16601136 | Msa1094630:CDS | 50.0% | |
| ACTGGTGTGATGGTTGGCAT+GGG | - | chr7_3:16601153-16601172 | Msa1094630:CDS | 50.0% | |
| GTGATGAGGCACAGTCTAAG+AGG | - | chr7_3:16601196-16601215 | Msa1094630:CDS | 50.0% | |
| GATGAGGCACAGTCTAAGAG+GGG | - | chr7_3:16601198-16601217 | Msa1094630:CDS | 50.0% | |
| TGTTAGCAACTGGGACGACA+TGG | - | chr7_3:16601257-16601276 | Msa1094630:CDS | 50.0% | |
| GGGACGACATGGAAAAGATC+TGG | - | chr7_3:16601268-16601287 | Msa1094630:CDS | 50.0% | |
| !! | AAGCACTGGGTGTTCTTCTG+GGG | + | chr7_3:16601325-16601344 | None:intergenic | 50.0% |
| ! | GGAGCCTCAGTTAAAAGCAC+TGG | + | chr7_3:16601339-16601358 | None:intergenic | 50.0% |
| GTTCTTTCACTGTACGCCAG+TGG | - | chr7_3:16601447-16601466 | Msa1094630:intron | 50.0% | |
| CACACTGTCCCTATCTACGA+GGG | - | chr7_3:16601957-16601976 | Msa1094630:intron | 50.0% | |
| GGGCATAACCCTCGTAGATA+GGG | + | chr7_3:16601968-16601987 | None:intergenic | 50.0% | |
| AGGGCATAACCCTCGTAGAT+AGG | + | chr7_3:16601969-16601988 | None:intergenic | 50.0% | |
| ACGAAGGATGGCATGTGGAA+GGG | + | chr7_3:16601988-16602007 | None:intergenic | 50.0% | |
| TCAAGACGAAGGATGGCATG+TGG | + | chr7_3:16601993-16602012 | None:intergenic | 50.0% | |
| TGCCATCCTTCGTCTTGATC+TGG | - | chr7_3:16601995-16602014 | Msa1094630:intron | 50.0% | |
| AGCCAGATCAAGACGAAGGA+TGG | + | chr7_3:16602000-16602019 | None:intergenic | 50.0% | |
| ATCCTTCGTCTTGATCTGGC+TGG | - | chr7_3:16601999-16602018 | Msa1094630:intron | 50.0% | |
| AATTTCACGCTCTGCTGAGG+TGG | + | chr7_3:16602081-16602100 | None:intergenic | 50.0% | |
| CCAGCTCTTGCTCATAGTCA+AGG | + | chr7_3:16602139-16602158 | None:intergenic | 50.0% | |
| CCTTGACTATGAGCAAGAGC+TGG | - | chr7_3:16602136-16602155 | Msa1094630:intron | 50.0% | |
| ! | CTACGAATTGCCTGATGGAC+AGG | - | chr7_3:16602193-16602212 | Msa1094630:intron | 50.0% |
| ATGGTGATCACCTGTCCATC+AGG | + | chr7_3:16602206-16602225 | None:intergenic | 50.0% | |
| GATGGACAGGTGATCACCAT+CGG | - | chr7_3:16602206-16602225 | Msa1094630:intron | 50.0% | |
| AGACGAGCGTTTCAGATGTC+CGG | - | chr7_3:16602229-16602248 | Msa1094630:intron | 50.0% | |
| CTCATTCTGTCAGCAATGCC+TGG | + | chr7_3:16602398-16602417 | None:intergenic | 50.0% | |
| ! | CTGGATTGGAGGTTCCATCT+TGG | - | chr7_3:16602493-16602512 | Msa1094630:intron | 50.0% |
| GGTGCTAAGAGATGCCAAGA+TGG | + | chr7_3:16602510-16602529 | None:intergenic | 50.0% | |
| ATCTCTTAGCACCTTCCAGC+AGG | - | chr7_3:16602517-16602536 | Msa1094630:intron | 50.0% | |
| TGCTGGGAAACACAGCACGA+GGG | + | chr7_3:16601113-16601132 | None:intergenic | 55.0% | |
| ATGCTGGGAAACACAGCACG+AGG | + | chr7_3:16601114-16601133 | None:intergenic | 55.0% | |
| CGAGGACGACCTACAATGCT+GGG | + | chr7_3:16601129-16601148 | None:intergenic | 55.0% | |
| ACGAGGACGACCTACAATGC+TGG | + | chr7_3:16601130-16601149 | None:intergenic | 55.0% | |
| TCCTCGTCACACTGGTGTGA+TGG | - | chr7_3:16601143-16601162 | Msa1094630:CDS | 55.0% | |
| ACCATCACACCAGTGTGACG+AGG | + | chr7_3:16601147-16601166 | None:intergenic | 55.0% | |
| CGTCACACTGGTGTGATGGT+TGG | - | chr7_3:16601147-16601166 | Msa1094630:CDS | 55.0% | |
| CACTGGTGTGATGGTTGGCA+TGG | - | chr7_3:16601152-16601171 | Msa1094630:CDS | 55.0% | |
| TGAGGCTCCTCTCAACCCTA+AGG | - | chr7_3:16601350-16601369 | Msa1094630:CDS | 55.0% | |
| !! | CGATTGGCCTTAGGGTTGAG+AGG | + | chr7_3:16601360-16601379 | None:intergenic | 55.0% |
| CCTCGTAGATAGGGACAGTG+TGG | + | chr7_3:16601959-16601978 | None:intergenic | 55.0% | |
| CCACACTGTCCCTATCTACG+AGG | - | chr7_3:16601956-16601975 | Msa1094630:intron | 55.0% | |
| GACGAAGGATGGCATGTGGA+AGG | + | chr7_3:16601989-16602008 | None:intergenic | 55.0% | |
| GACCAGCCAGATCAAGACGA+AGG | + | chr7_3:16602004-16602023 | None:intergenic | 55.0% | |
| ACGCTCTGCTGAGGTGGTAA+AGG | + | chr7_3:16602075-16602094 | None:intergenic | 55.0% | |
| ! | TCTGAAACGCTCGTCTCCGA+TGG | + | chr7_3:16602225-16602244 | None:intergenic | 55.0% |
| GATGGTTGGAACAGGACCTC+CGG | + | chr7_3:16602251-16602270 | None:intergenic | 55.0% | |
| GGAGGAACAACCATGTTCCC+AGG | - | chr7_3:16602377-16602396 | Msa1094630:intron | 55.0% | |
| GTCAGCAATGCCTGGGAACA+TGG | + | chr7_3:16602390-16602409 | None:intergenic | 55.0% | |
| GCTGGGAAACACAGCACGAG+GGG | + | chr7_3:16601112-16601131 | None:intergenic | 60.0% | |
| GTAGGTCGTCCTCGTCACAC+TGG | - | chr7_3:16601135-16601154 | Msa1094630:CDS | 60.0% | |
| TACGCCAGTGGTCGTACCAC+CGG | - | chr7_3:16601459-16601478 | Msa1094630:intron | 60.0% | |
| CTTACCGGTGGTACGACCAC+TGG | + | chr7_3:16601466-16601485 | None:intergenic | 60.0% | |
| AGCAAGAGCTGGAGACAGCC+AGG | - | chr7_3:16602147-16602166 | Msa1094630:intron | 60.0% | |
| GCTCTTCTCGACGGATGAGC+TGG | + | chr7_3:16602174-16602193 | None:intergenic | 60.0% | |
| CGAGCGTTTCAGATGTCCGG+AGG | - | chr7_3:16602232-16602251 | Msa1094630:intron | 60.0% | |
| GTAGACGATGGCAGACGCGG+AGG | - | chr7_3:16600575-16600594 | Msa1094630:intron | 65.0% | |
| CTCGACGGATGAGCTGGTCC+TGG | + | chr7_3:16602168-16602187 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 16599082 | 16603417 | 16599082 | ID=Msa1094630;Name=Msa1094630 |
| chr7_3 | mRNA | 16599082 | 16603417 | 16599082 | ID=Msa1094630-mRNA-1;Parent=Msa1094630;Name=Msa1094630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=175|1|1|1|0.75|0.6|5|336|377 |
| chr7_3 | exon | 16599082 | 16599483 | 16599082 | ID=Msa1094630-mRNA-1:exon:3716;Parent=Msa1094630-mRNA-1 |
| chr7_3 | exon | 16599961 | 16600574 | 16599961 | ID=Msa1094630-mRNA-1:exon:3715;Parent=Msa1094630-mRNA-1 |
| chr7_3 | exon | 16601019 | 16601412 | 16601019 | ID=Msa1094630-mRNA-1:exon:3714;Parent=Msa1094630-mRNA-1 |
| chr7_3 | exon | 16601858 | 16601927 | 16601858 | ID=Msa1094630-mRNA-1:exon:3713;Parent=Msa1094630-mRNA-1 |
| chr7_3 | exon | 16603253 | 16603417 | 16603253 | ID=Msa1094630-mRNA-1:exon:3712;Parent=Msa1094630-mRNA-1 |
| chr7_3 | five_prime_UTR | 16603253 | 16603417 | 16603253 | ID=Msa1094630-mRNA-1:five_prime_utr;Parent=Msa1094630-mRNA-1 |
| chr7_3 | five_prime_UTR | 16601918 | 16601927 | 16601918 | ID=Msa1094630-mRNA-1:five_prime_utr;Parent=Msa1094630-mRNA-1 |
| chr7_3 | CDS | 16601858 | 16601917 | 16601858 | ID=Msa1094630-mRNA-1:cds;Parent=Msa1094630-mRNA-1 |
| chr7_3 | CDS | 16601019 | 16601412 | 16601019 | ID=Msa1094630-mRNA-1:cds;Parent=Msa1094630-mRNA-1 |
| chr7_3 | CDS | 16599961 | 16600574 | 16599961 | ID=Msa1094630-mRNA-1:cds;Parent=Msa1094630-mRNA-1 |
| chr7_3 | CDS | 16599418 | 16599483 | 16599418 | ID=Msa1094630-mRNA-1:cds;Parent=Msa1094630-mRNA-1 |
| chr7_3 | three_prime_UTR | 16599082 | 16599417 | 16599082 | ID=Msa1094630-mRNA-1:three_prime_utr;Parent=Msa1094630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
