AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705050 MtrunA17_Chr8g0383271 94.118 170 9 1 3 171 1 170 7.92e-105 298
Msa0705050 MtrunA17_Chr1g0178671 38.679 106 62 2 70 175 21 123 2.15e-21 84.7
Msa0705050 MtrunA17_Chr7g0266291 34.454 119 72 4 60 175 41 156 4.32e-15 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705050 AT1G10500.1 64.835 182 52 3 7 179 2 180 2.09e-76 226
Msa0705050 AT2G16710.1 37.719 114 63 3 67 175 14 124 1.43e-21 85.9
Msa0705050 AT2G16710.3 35.593 118 66 3 67 175 14 130 3.89e-21 84.7
Msa0705050 AT2G36260.1 33.962 106 66 3 70 175 5 106 1.16e-17 74.7
Msa0705050 AT5G03905.1 34.234 111 70 2 70 179 50 158 3.65e-17 74.7
Msa0705050 AT2G16710.2 35.366 82 50 2 70 151 22 100 7.37e-13 62.4

Find 56 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTTGATACATCGATTA+TGG 0.182656 4_4:+77579193 Msa0705050:three_prime_UTR
CTCTGTTGATACATCGATTA+TGG 0.182656 4_4:+77579233 Msa0705050:three_prime_UTR
AAGAGCCTACTCTTCGTATT+TGG 0.197827 4_4:+77578815 Msa0705050:CDS
GATCGAATTGAGAGAGGTTT+AGG 0.272109 4_4:-77577298 None:intergenic
CAATACTTCGGAGTAATTAT+AGG 0.301592 4_4:+77578995 Msa0705050:three_prime_UTR
CCACAGGTTTGTGTCGCATT+AGG 0.312594 4_4:-77578893 None:intergenic
CAAGATTTGTGTTTAAGAAT+TGG 0.321991 4_4:+77577967 Msa0705050:CDS
GATTGGAACGCGAACGAATT+GGG 0.333118 4_4:-77577218 None:intergenic
CCACAGCAAACAAACAGATA+TGG 0.339633 4_4:-77579081 None:intergenic
AATACGAAGAGTAGGCTCTT+AGG 0.361492 4_4:-77578812 None:intergenic
GAACAATATAATATAAATAC+TGG 0.367518 4_4:+77579138 Msa0705050:three_prime_UTR
TGATTGGAACGCGAACGAAT+TGG 0.382823 4_4:-77577219 None:intergenic
GGTGCCACGGCCCCAGATGC+AGG 0.406436 4_4:-77577883 None:intergenic
ATCGAATTGAGAGAGGTTTA+GGG 0.409502 4_4:-77577297 None:intergenic
GAGAGAGAGCTATGAGTGAT+TGG 0.409580 4_4:-77577235 None:intergenic
TGCACCTGCATCTGGGGCCG+TGG 0.436538 4_4:+77577879 Msa0705050:CDS
AAAACCTTTGTATTCAATGA+TGG 0.441255 4_4:-77578067 None:intergenic
CTAAAGCGGCGATTGAGAAT+TGG 0.446890 4_4:-77577274 None:intergenic
GACTACAGTGATGCTCTGAT+TGG 0.458599 4_4:+77578848 Msa0705050:CDS
GTCAAACAAGGTGGGTGCTC+TGG 0.472114 4_4:+77577991 Msa0705050:CDS
CACAGCAAACAAACAGATAT+GGG 0.474400 4_4:-77579080 None:intergenic
CCATATCTGTTTGTTTGCTG+TGG 0.480157 4_4:+77579081 Msa0705050:three_prime_UTR
CGATGTATCAACAGAGAAAG+TGG 0.485454 4_4:-77579186 None:intergenic
CGATGTATCAACAGAGAAAG+TGG 0.485454 4_4:-77579226 None:intergenic
TTATCTGTAAGCGAAATTGC+AGG 0.509358 4_4:-77577904 None:intergenic
ATTGGAACGCGAACGAATTG+GGG 0.513543 4_4:-77577217 None:intergenic
AAATGATTTACCACATCCAC+AGG 0.517325 4_4:-77578909 None:intergenic
AAATCAAACATGGCCATGGC+TGG 0.519320 4_4:+77577154 Msa0705050:exon
TCACTTTCCGTTATTGATGC+CGG 0.520999 4_4:+77577319 Msa0705050:CDS
AGACAATAGTTACAATACTA+AGG 0.522902 4_4:+77578959 Msa0705050:three_prime_UTR
GGGCTTACCGGCATCAATAA+CGG 0.525462 4_4:-77577326 None:intergenic
TATTCAATGATGGAGTCGTC+TGG 0.526703 4_4:-77578057 None:intergenic
TACAGTGATGCTCTGATTGG+AGG 0.527694 4_4:+77578851 Msa0705050:CDS
ACAATAAACTGATGCACCAC+AGG 0.539750 4_4:-77579104 None:intergenic
TGTTTGTTTGCTGTGGCCTG+TGG 0.558121 4_4:+77579088 Msa0705050:three_prime_UTR
TTTAGCTGCACCTGCATCTG+GGG 0.577576 4_4:+77577873 Msa0705050:intron
GCGACACAAACCTGTGGATG+TGG 0.581388 4_4:+77578899 Msa0705050:CDS
TTAAGAATTGGTGTCAAACA+AGG 0.584994 4_4:+77577979 Msa0705050:CDS
AAGCGAAATTGCAGGTGCCA+CGG 0.587731 4_4:-77577896 None:intergenic
AGAATTGGTGTCAAACAAGG+TGG 0.587930 4_4:+77577982 Msa0705050:CDS
AGTGATGCTCTGATTGGAGG+AGG 0.589985 4_4:+77578854 Msa0705050:CDS
TTGAGGACAGGGCTAATGCA+AGG 0.598318 4_4:+77578034 Msa0705050:CDS
CAATTACTACTACCGCGCAC+TGG 0.599076 4_4:+77577191 Msa0705050:CDS
AGAGAGGTTTAGGGCTAAAG+CGG 0.601518 4_4:-77577288 None:intergenic
GCATTCCAAATACGAAGAGT+AGG 0.603532 4_4:-77578820 None:intergenic
ACACAAATCAAACATGGCCA+TGG 0.605803 4_4:+77577150 Msa0705050:exon
AGAGAAAGCAGCACCAGCCA+TGG 0.608264 4_4:-77577167 None:intergenic
CTCTGGTATGTCATACACAA+TGG 0.609613 4_4:+77578008 Msa0705050:CDS
TTCTCTACACAAATCAAACA+TGG 0.615705 4_4:+77577144 Msa0705050:exon
GAATGTTTGAAGCAATACTT+CGG 0.618101 4_4:+77578983 Msa0705050:three_prime_UTR
GAAAGTGATCGAATTGAGAG+AGG 0.627615 4_4:-77577304 None:intergenic
TCAATCACTTGAATAAGATG+AGG 0.638619 4_4:+77577932 Msa0705050:CDS
GAATTGGTGTCAAACAAGGT+GGG 0.648767 4_4:+77577983 Msa0705050:CDS
GACTCCATCATTGAATACAA+AGG 0.682577 4_4:+77578063 Msa0705050:CDS
CCTAATGCGACACAAACCTG+TGG 0.690717 4_4:+77578893 Msa0705050:CDS
GAATTGGGGAGACCAGTGCG+CGG 0.788727 4_4:-77577203 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAATAGAAGAATAT+GGG - chr4_4:77577350-77577369 None:intergenic 10.0%
!! ATTAATAAATAGAAGAATAT+GGG - chr4_4:77577350-77577369 None:intergenic 10.0%
!! TTAATAAATAGAAGAATATG+GGG - chr4_4:77577349-77577368 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG - chr4_4:77577351-77577370 None:intergenic 15.0%
!! ATGTATGAGTTTAAAAAAAA+TGG + chr4_4:77577728-77577747 Msa0705050:intron 15.0%
!! TGTATGAGTTTAAAAAAAAT+GGG + chr4_4:77577729-77577748 Msa0705050:intron 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG + chr4_4:77578300-77578319 Msa0705050:intron 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG + chr4_4:77578301-77578320 Msa0705050:intron 15.0%
!!! TTTTATTACAATCACATTAT+AGG + chr4_4:77579019-77579038 Msa0705050:three_prime_UTR 15.0%
!! GAACAATATAATATAAATAC+TGG + chr4_4:77579138-77579157 Msa0705050:three_prime_UTR 15.0%
!! TTAATAAATAGAAGAATATG+GGG - chr4_4:77577349-77577368 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG - chr4_4:77577351-77577370 None:intergenic 15.0%
!! ATGTATGAGTTTAAAAAAAA+TGG + chr4_4:77577728-77577747 Msa0705050:intron 15.0%
!! TGTATGAGTTTAAAAAAAAT+GGG + chr4_4:77577729-77577748 Msa0705050:intron 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG + chr4_4:77578300-77578319 Msa0705050:intron 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG + chr4_4:77578301-77578320 Msa0705050:intron 15.0%
!!! TTTTATTACAATCACATTAT+AGG + chr4_4:77579019-77579038 Msa0705050:three_prime_UTR 15.0%
!! GAACAATATAATATAAATAC+TGG + chr4_4:77579138-77579157 Msa0705050:three_prime_UTR 15.0%
!! CAAAATACTCCTATTAATTA+GGG - chr4_4:77577519-77577538 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG - chr4_4:77577520-77577539 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG - chr4_4:77577555-77577574 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG - chr4_4:77578153-77578172 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG + chr4_4:77578189-77578208 Msa0705050:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG - chr4_4:77578341-77578360 None:intergenic 20.0%
!! CAAAATACTCCTATTAATTA+GGG - chr4_4:77577519-77577538 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG - chr4_4:77577520-77577539 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG - chr4_4:77577555-77577574 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG - chr4_4:77578153-77578172 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG + chr4_4:77578189-77578208 Msa0705050:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG - chr4_4:77578341-77578360 None:intergenic 20.0%
! ATCATCATCATCATCAAATT+GGG + chr4_4:77577078-77577097 Msa0705050:five_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG - chr4_4:77577410-77577429 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG + chr4_4:77577527-77577546 Msa0705050:intron 25.0%
!! TTTTAAACTCATACATAGCA+TGG - chr4_4:77577724-77577743 None:intergenic 25.0%
! GCAAATGTTGAATAAATACA+TGG - chr4_4:77577840-77577859 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG + chr4_4:77577967-77577986 Msa0705050:CDS 25.0%
! AAAACCTTTGTATTCAATGA+TGG - chr4_4:77578070-77578089 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG - chr4_4:77578191-77578210 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG + chr4_4:77578188-77578207 Msa0705050:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG - chr4_4:77578217-77578236 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG + chr4_4:77578368-77578387 Msa0705050:intron 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG + chr4_4:77578628-77578647 Msa0705050:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG + chr4_4:77578677-77578696 Msa0705050:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG + chr4_4:77578714-77578733 Msa0705050:intron 25.0%
! AGACAATAGTTACAATACTA+AGG + chr4_4:77578959-77578978 Msa0705050:three_prime_UTR 25.0%
! ATCATCATCATCATCAAATT+GGG + chr4_4:77577078-77577097 Msa0705050:five_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG - chr4_4:77577410-77577429 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG + chr4_4:77577527-77577546 Msa0705050:intron 25.0%
!! TTTTAAACTCATACATAGCA+TGG - chr4_4:77577724-77577743 None:intergenic 25.0%
! GCAAATGTTGAATAAATACA+TGG - chr4_4:77577840-77577859 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG + chr4_4:77577967-77577986 Msa0705050:CDS 25.0%
! AAAACCTTTGTATTCAATGA+TGG - chr4_4:77578070-77578089 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG - chr4_4:77578191-77578210 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG + chr4_4:77578188-77578207 Msa0705050:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG - chr4_4:77578217-77578236 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG + chr4_4:77578368-77578387 Msa0705050:intron 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG + chr4_4:77578628-77578647 Msa0705050:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG + chr4_4:77578677-77578696 Msa0705050:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG + chr4_4:77578714-77578733 Msa0705050:intron 25.0%
! AGACAATAGTTACAATACTA+AGG + chr4_4:77578959-77578978 Msa0705050:three_prime_UTR 25.0%
CATCATCATCATCATCAAAT+TGG + chr4_4:77577077-77577096 Msa0705050:five_prime_UTR 30.0%
GGGACAAAACAAAAACATAT+TGG + chr4_4:77577098-77577117 Msa0705050:five_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG + chr4_4:77577144-77577163 Msa0705050:exon 30.0%
ATACTCCTATTAATTAGGGT+AGG - chr4_4:77577515-77577534 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG + chr4_4:77577563-77577582 Msa0705050:intron 30.0%
TCAATCACTTGAATAAGATG+AGG + chr4_4:77577932-77577951 Msa0705050:CDS 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG + chr4_4:77577979-77577998 Msa0705050:CDS 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG + chr4_4:77578075-77578094 Msa0705050:CDS 30.0%
ACAGATATGATAGTTAACAG+AGG - chr4_4:77578456-77578475 None:intergenic 30.0%
!!! TTTTTTTTATGGCTGCACTT+GGG + chr4_4:77578688-77578707 Msa0705050:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG + chr4_4:77578983-77579002 Msa0705050:three_prime_UTR 30.0%
CAATACTTCGGAGTAATTAT+AGG + chr4_4:77578995-77579014 Msa0705050:three_prime_UTR 30.0%
CATCATCATCATCATCAAAT+TGG + chr4_4:77577077-77577096 Msa0705050:five_prime_UTR 30.0%
GGGACAAAACAAAAACATAT+TGG + chr4_4:77577098-77577117 Msa0705050:five_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG + chr4_4:77577144-77577163 Msa0705050:exon 30.0%
ATACTCCTATTAATTAGGGT+AGG - chr4_4:77577515-77577534 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG + chr4_4:77577563-77577582 Msa0705050:intron 30.0%
TCAATCACTTGAATAAGATG+AGG + chr4_4:77577932-77577951 Msa0705050:CDS 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG + chr4_4:77577979-77577998 Msa0705050:CDS 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG + chr4_4:77578075-77578094 Msa0705050:CDS 30.0%
ACAGATATGATAGTTAACAG+AGG - chr4_4:77578456-77578475 None:intergenic 30.0%
!!! TTTTTTTTATGGCTGCACTT+GGG + chr4_4:77578688-77578707 Msa0705050:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG + chr4_4:77578983-77579002 Msa0705050:three_prime_UTR 30.0%
CAATACTTCGGAGTAATTAT+AGG + chr4_4:77578995-77579014 Msa0705050:three_prime_UTR 30.0%
ATCGAATTGAGAGAGGTTTA+GGG - chr4_4:77577300-77577319 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG - chr4_4:77577486-77577505 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG - chr4_4:77577507-77577526 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG + chr4_4:77577507-77577526 Msa0705050:intron 35.0%
! TCTTTACACTCAGATTAGTC+AGG + chr4_4:77577677-77577696 Msa0705050:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG + chr4_4:77577678-77577697 Msa0705050:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG - chr4_4:77577907-77577926 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG + chr4_4:77578017-77578036 Msa0705050:CDS 35.0%
GACTCCATCATTGAATACAA+AGG + chr4_4:77578063-77578082 Msa0705050:CDS 35.0%
! TTTTCCTGCTCTTTCTCTTT+TGG + chr4_4:77578126-77578145 Msa0705050:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG + chr4_4:77578252-77578271 Msa0705050:intron 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG + chr4_4:77578253-77578272 Msa0705050:intron 35.0%
TCAAGACTTGATTGAAAGCT+TGG + chr4_4:77578579-77578598 Msa0705050:intron 35.0%
AAGAACTGAAGAAGATAACG+TGG - chr4_4:77578611-77578630 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG + chr4_4:77578644-77578663 Msa0705050:intron 35.0%
!!! CTTTTTTTTATGGCTGCACT+TGG + chr4_4:77578687-77578706 Msa0705050:intron 35.0%
AAATGATTTACCACATCCAC+AGG - chr4_4:77578912-77578931 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG - chr4_4:77579083-77579102 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG + chr4_4:77579193-77579212 Msa0705050:three_prime_UTR 35.0%
! CTCTGTTGATACATCGATTA+TGG + chr4_4:77579193-77579212 Msa0705050:three_prime_UTR 35.0%
ATCGAATTGAGAGAGGTTTA+GGG - chr4_4:77577300-77577319 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG - chr4_4:77577486-77577505 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG - chr4_4:77577507-77577526 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG + chr4_4:77577507-77577526 Msa0705050:intron 35.0%
! TCTTTACACTCAGATTAGTC+AGG + chr4_4:77577677-77577696 Msa0705050:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG + chr4_4:77577678-77577697 Msa0705050:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG - chr4_4:77577907-77577926 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG + chr4_4:77578017-77578036 Msa0705050:CDS 35.0%
GACTCCATCATTGAATACAA+AGG + chr4_4:77578063-77578082 Msa0705050:CDS 35.0%
! TTTTCCTGCTCTTTCTCTTT+TGG + chr4_4:77578126-77578145 Msa0705050:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG + chr4_4:77578252-77578271 Msa0705050:intron 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG + chr4_4:77578253-77578272 Msa0705050:intron 35.0%
TCAAGACTTGATTGAAAGCT+TGG + chr4_4:77578579-77578598 Msa0705050:intron 35.0%
AAGAACTGAAGAAGATAACG+TGG - chr4_4:77578611-77578630 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG + chr4_4:77578644-77578663 Msa0705050:intron 35.0%
!!! CTTTTTTTTATGGCTGCACT+TGG + chr4_4:77578687-77578706 Msa0705050:intron 35.0%
AAATGATTTACCACATCCAC+AGG - chr4_4:77578912-77578931 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG - chr4_4:77579083-77579102 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG + chr4_4:77579193-77579212 Msa0705050:three_prime_UTR 35.0%
! CTCTGTTGATACATCGATTA+TGG + chr4_4:77579193-77579212 Msa0705050:three_prime_UTR 35.0%
ACACAAATCAAACATGGCCA+TGG + chr4_4:77577150-77577169 Msa0705050:exon 40.0%
GATCGAATTGAGAGAGGTTT+AGG - chr4_4:77577301-77577320 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG - chr4_4:77577307-77577326 None:intergenic 40.0%
TCACTTTCCGTTATTGATGC+CGG + chr4_4:77577319-77577338 Msa0705050:CDS 40.0%
TAGAAGAATATGGGGCTTAC+CGG - chr4_4:77577341-77577360 None:intergenic 40.0%
! AAACCTAGCAGCAAGTATTG+GGG - chr4_4:77577445-77577464 None:intergenic 40.0%
CAAACCTAGCAGCAAGTATT+GGG - chr4_4:77577446-77577465 None:intergenic 40.0%
ACAAACCTAGCAGCAAGTAT+TGG - chr4_4:77577447-77577466 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG - chr4_4:77577506-77577525 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG - chr4_4:77577596-77577615 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG + chr4_4:77577982-77578001 Msa0705050:CDS 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG + chr4_4:77577983-77578002 Msa0705050:CDS 40.0%
CTCTGGTATGTCATACACAA+TGG + chr4_4:77578008-77578027 Msa0705050:CDS 40.0%
!! ACACAATGGATTTTGAGGAC+AGG + chr4_4:77578022-77578041 Msa0705050:CDS 40.0%
!! CACAATGGATTTTGAGGACA+GGG + chr4_4:77578023-77578042 Msa0705050:CDS 40.0%
! TATTCAATGATGGAGTCGTC+TGG - chr4_4:77578060-77578079 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG + chr4_4:77578271-77578290 Msa0705050:intron 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG + chr4_4:77578272-77578291 Msa0705050:intron 40.0%
AATCCTGCTTAACAAAGTGC+TGG - chr4_4:77578545-77578564 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG - chr4_4:77578608-77578627 None:intergenic 40.0%
TAAGCTTGGCAAACGAAAGA+AGG + chr4_4:77578728-77578747 Msa0705050:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG - chr4_4:77578815-77578834 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG + chr4_4:77578815-77578834 Msa0705050:CDS 40.0%
GCATTCCAAATACGAAGAGT+AGG - chr4_4:77578823-77578842 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG - chr4_4:77579084-77579103 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG + chr4_4:77579081-77579100 Msa0705050:three_prime_UTR 40.0%
ACAATAAACTGATGCACCAC+AGG - chr4_4:77579107-77579126 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG - chr4_4:77579189-77579208 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG - chr4_4:77579189-77579208 None:intergenic 40.0%
ACACAAATCAAACATGGCCA+TGG + chr4_4:77577150-77577169 Msa0705050:exon 40.0%
GATCGAATTGAGAGAGGTTT+AGG - chr4_4:77577301-77577320 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG - chr4_4:77577307-77577326 None:intergenic 40.0%
TCACTTTCCGTTATTGATGC+CGG + chr4_4:77577319-77577338 Msa0705050:CDS 40.0%
TAGAAGAATATGGGGCTTAC+CGG - chr4_4:77577341-77577360 None:intergenic 40.0%
! AAACCTAGCAGCAAGTATTG+GGG - chr4_4:77577445-77577464 None:intergenic 40.0%
CAAACCTAGCAGCAAGTATT+GGG - chr4_4:77577446-77577465 None:intergenic 40.0%
ACAAACCTAGCAGCAAGTAT+TGG - chr4_4:77577447-77577466 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG - chr4_4:77577506-77577525 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG - chr4_4:77577596-77577615 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG + chr4_4:77577982-77578001 Msa0705050:CDS 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG + chr4_4:77577983-77578002 Msa0705050:CDS 40.0%
CTCTGGTATGTCATACACAA+TGG + chr4_4:77578008-77578027 Msa0705050:CDS 40.0%
!! ACACAATGGATTTTGAGGAC+AGG + chr4_4:77578022-77578041 Msa0705050:CDS 40.0%
!! CACAATGGATTTTGAGGACA+GGG + chr4_4:77578023-77578042 Msa0705050:CDS 40.0%
! TATTCAATGATGGAGTCGTC+TGG - chr4_4:77578060-77578079 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG + chr4_4:77578271-77578290 Msa0705050:intron 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG + chr4_4:77578272-77578291 Msa0705050:intron 40.0%
AATCCTGCTTAACAAAGTGC+TGG - chr4_4:77578545-77578564 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG - chr4_4:77578608-77578627 None:intergenic 40.0%
TAAGCTTGGCAAACGAAAGA+AGG + chr4_4:77578728-77578747 Msa0705050:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG - chr4_4:77578815-77578834 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG + chr4_4:77578815-77578834 Msa0705050:CDS 40.0%
GCATTCCAAATACGAAGAGT+AGG - chr4_4:77578823-77578842 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG - chr4_4:77579084-77579103 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG + chr4_4:77579081-77579100 Msa0705050:three_prime_UTR 40.0%
ACAATAAACTGATGCACCAC+AGG - chr4_4:77579107-77579126 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG - chr4_4:77579189-77579208 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG - chr4_4:77579189-77579208 None:intergenic 40.0%
AAATCAAACATGGCCATGGC+TGG + chr4_4:77577154-77577173 Msa0705050:exon 45.0%
ATTGGAACGCGAACGAATTG+GGG - chr4_4:77577220-77577239 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG - chr4_4:77577221-77577240 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG - chr4_4:77577222-77577241 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG - chr4_4:77577238-77577257 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG - chr4_4:77577277-77577296 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG - chr4_4:77577291-77577310 None:intergenic 45.0%
TAATTAGGGTAGGCAAAGCG+GGG - chr4_4:77577505-77577524 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG + chr4_4:77577695-77577714 Msa0705050:intron 45.0%
ATACATGGTCGAGACAGACA+GGG - chr4_4:77577825-77577844 None:intergenic 45.0%
AATACATGGTCGAGACAGAC+AGG - chr4_4:77577826-77577845 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG + chr4_4:77577871-77577890 Msa0705050:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG + chr4_4:77577872-77577891 Msa0705050:intron 45.0%
TGGACCAAAAGAGAAAGAGC+AGG - chr4_4:77578133-77578152 None:intergenic 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG + chr4_4:77578133-77578152 Msa0705050:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG + chr4_4:77578647-77578666 Msa0705050:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG + chr4_4:77578848-77578867 Msa0705050:CDS 45.0%
TACAGTGATGCTCTGATTGG+AGG + chr4_4:77578851-77578870 Msa0705050:CDS 45.0%
AAATCAAACATGGCCATGGC+TGG + chr4_4:77577154-77577173 Msa0705050:exon 45.0%
ATTGGAACGCGAACGAATTG+GGG - chr4_4:77577220-77577239 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG - chr4_4:77577221-77577240 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG - chr4_4:77577222-77577241 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG - chr4_4:77577238-77577257 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG - chr4_4:77577277-77577296 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG - chr4_4:77577291-77577310 None:intergenic 45.0%
TAATTAGGGTAGGCAAAGCG+GGG - chr4_4:77577505-77577524 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG + chr4_4:77577695-77577714 Msa0705050:intron 45.0%
ATACATGGTCGAGACAGACA+GGG - chr4_4:77577825-77577844 None:intergenic 45.0%
AATACATGGTCGAGACAGAC+AGG - chr4_4:77577826-77577845 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG + chr4_4:77577871-77577890 Msa0705050:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG + chr4_4:77577872-77577891 Msa0705050:intron 45.0%
TGGACCAAAAGAGAAAGAGC+AGG - chr4_4:77578133-77578152 None:intergenic 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG + chr4_4:77578133-77578152 Msa0705050:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG + chr4_4:77578647-77578666 Msa0705050:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG + chr4_4:77578848-77578867 Msa0705050:CDS 45.0%
TACAGTGATGCTCTGATTGG+AGG + chr4_4:77578851-77578870 Msa0705050:CDS 45.0%
CAATTACTACTACCGCGCAC+TGG + chr4_4:77577191-77577210 Msa0705050:CDS 50.0%
GGGCTTACCGGCATCAATAA+CGG - chr4_4:77577329-77577348 None:intergenic 50.0%
! AGACCCCAATACTTGCTGCT+AGG + chr4_4:77577439-77577458 Msa0705050:intron 50.0%
! GGGAGTGCAACAAAGCACTT+CGG + chr4_4:77577749-77577768 Msa0705050:intron 50.0%
TACATGGTCGAGACAGACAG+GGG - chr4_4:77577824-77577843 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG + chr4_4:77577873-77577892 Msa0705050:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG - chr4_4:77577899-77577918 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG + chr4_4:77578034-77578053 Msa0705050:CDS 50.0%
CTGCCAGCACTTTGTTAAGC+AGG + chr4_4:77578539-77578558 Msa0705050:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG + chr4_4:77578854-77578873 Msa0705050:CDS 50.0%
CCACAGGTTTGTGTCGCATT+AGG - chr4_4:77578896-77578915 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG + chr4_4:77578893-77578912 Msa0705050:CDS 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG + chr4_4:77579088-77579107 Msa0705050:three_prime_UTR 50.0%
CAATTACTACTACCGCGCAC+TGG + chr4_4:77577191-77577210 Msa0705050:CDS 50.0%
GGGCTTACCGGCATCAATAA+CGG - chr4_4:77577329-77577348 None:intergenic 50.0%
! AGACCCCAATACTTGCTGCT+AGG + chr4_4:77577439-77577458 Msa0705050:intron 50.0%
! GGGAGTGCAACAAAGCACTT+CGG + chr4_4:77577749-77577768 Msa0705050:intron 50.0%
TACATGGTCGAGACAGACAG+GGG - chr4_4:77577824-77577843 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG + chr4_4:77577873-77577892 Msa0705050:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG - chr4_4:77577899-77577918 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG + chr4_4:77578034-77578053 Msa0705050:CDS 50.0%
CTGCCAGCACTTTGTTAAGC+AGG + chr4_4:77578539-77578558 Msa0705050:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG + chr4_4:77578854-77578873 Msa0705050:CDS 50.0%
CCACAGGTTTGTGTCGCATT+AGG - chr4_4:77578896-77578915 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG + chr4_4:77578893-77578912 Msa0705050:CDS 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG + chr4_4:77579088-77579107 Msa0705050:three_prime_UTR 50.0%
AGAGAAAGCAGCACCAGCCA+TGG - chr4_4:77577170-77577189 None:intergenic 55.0%
GGCATGTGTCCGTGGTTCAT+AGG - chr4_4:77577575-77577594 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG + chr4_4:77577578-77577597 Msa0705050:intron 55.0%
ACCACGGACACATGCCACAT+GGG + chr4_4:77577579-77577598 Msa0705050:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG + chr4_4:77577991-77578010 Msa0705050:CDS 55.0%
GCGACACAAACCTGTGGATG+TGG + chr4_4:77578899-77578918 Msa0705050:CDS 55.0%
AGAGAAAGCAGCACCAGCCA+TGG - chr4_4:77577170-77577189 None:intergenic 55.0%
GGCATGTGTCCGTGGTTCAT+AGG - chr4_4:77577575-77577594 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG + chr4_4:77577578-77577597 Msa0705050:intron 55.0%
ACCACGGACACATGCCACAT+GGG + chr4_4:77577579-77577598 Msa0705050:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG + chr4_4:77577991-77578010 Msa0705050:CDS 55.0%
GCGACACAAACCTGTGGATG+TGG + chr4_4:77578899-77578918 Msa0705050:CDS 55.0%
GAATTGGGGAGACCAGTGCG+CGG - chr4_4:77577206-77577225 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG - chr4_4:77577583-77577602 None:intergenic 60.0%
GAATTGGGGAGACCAGTGCG+CGG - chr4_4:77577206-77577225 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG - chr4_4:77577583-77577602 None:intergenic 60.0%
! TGCACCTGCATCTGGGGCCG+TGG + chr4_4:77577879-77577898 Msa0705050:CDS 70.0%
! TGCACCTGCATCTGGGGCCG+TGG + chr4_4:77577879-77577898 Msa0705050:CDS 70.0%
! GGTGCCACGGCCCCAGATGC+AGG - chr4_4:77577886-77577905 None:intergenic 75.0%
! GGTGCCACGGCCCCAGATGC+AGG - chr4_4:77577886-77577905 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77577077 77579260 77577077 ID=Msa0705050;Name=Msa0705050
chr4_4 mRNA 77577077 77579260 77577077 ID=Msa0705050-mRNA-1;Parent=Msa0705050;Name=Msa0705050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|3|314|179
chr4_4 exon 77577077 77577340 77577077 ID=Msa0705050-mRNA-1:exon:24580;Parent=Msa0705050-mRNA-1
chr4_4 exon 77577878 77578096 77577878 ID=Msa0705050-mRNA-1:exon:24581;Parent=Msa0705050-mRNA-1
chr4_4 exon 77578804 77579260 77578804 ID=Msa0705050-mRNA-1:exon:24582;Parent=Msa0705050-mRNA-1
chr4_4 five_prime_UTR 77577077 77577162 77577077 ID=Msa0705050-mRNA-1:five_prime_utr;Parent=Msa0705050-mRNA-1
chr4_4 CDS 77577163 77577340 77577163 ID=Msa0705050-mRNA-1:cds;Parent=Msa0705050-mRNA-1
chr4_4 CDS 77577878 77578096 77577878 ID=Msa0705050-mRNA-1:cds;Parent=Msa0705050-mRNA-1
chr4_4 CDS 77578804 77578946 77578804 ID=Msa0705050-mRNA-1:cds;Parent=Msa0705050-mRNA-1
chr4_4 three_prime_UTR 77578947 77579260 77578947 ID=Msa0705050-mRNA-1:three_prime_utr;Parent=Msa0705050-mRNA-1
Gene Sequence

>Msa0705050

ATGGCCATGGCTGGTGCTGCTTTCTCTACAATTACTACTACCGCGCACTGGTCTCCCCAATTCGTTCGCGTTCCAATCACTCATAGCTCTCTCTCTTTTCGATTTTCAACTCCAATTCTCAATCGCCGCTTTAGCCCTAAACCTCTCTCAATTCGATCACTTTCCGTTATTGATGCCGCTGCACCTGCATCTGGGGCCGTGGCACCTGCAATTTCGCTTACAGATAATGCACTCAATCACTTGAATAAGATGAGGTCTGAACGAAGTCAAGATTTGTGTTTAAGAATTGGTGTCAAACAAGGTGGGTGCTCTGGTATGTCATACACAATGGATTTTGAGGACAGGGCTAATGCAAGGCCAGACGACTCCATCATTGAATACAAAGGTTTTGTCATTGTTTGTGATCCTAAGAGCCTACTCTTCGTATTTGGAATGCAATTAGACTACAGTGATGCTCTGATTGGAGGAGGCTTCAATTTCAAGAATCCTAATGCGACACAAACCTGTGGATGTGGTAAATCATTTAATGCAGAAATGTAA

Protein sequence

>Msa0705050

MAMAGAAFSTITTTAHWSPQFVRVPITHSSLSFRFSTPILNRRFSPKPLSIRSLSVIDAAAPASGAVAPAISLTDNALNHLNKMRSERSQDLCLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYKGFVIVCDPKSLLFVFGMQLDYSDALIGGGFNFKNPNATQTCGCGKSFNAEM*