Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436090 | XP_013461791.1 | 87.448 | 239 | 23 | 2 | 1 | 239 | 1 | 232 | 2.83e-133 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436090 | A0A072V2E5 | 87.448 | 239 | 23 | 2 | 1 | 239 | 1 | 232 | 1.35e-133 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000820 | Msa1436090 | 0.846999 | 1.525680e-59 | -8.615850e-47 |
| Msa0002300 | Msa1436090 | 0.808929 | 2.432151e-50 | -8.615850e-47 |
| Msa0005260 | Msa1436090 | 0.807887 | 4.057649e-50 | -8.615850e-47 |
| Msa0022470 | Msa1436090 | 0.800103 | 1.685906e-48 | -8.615850e-47 |
| Msa0037760 | Msa1436090 | 0.808260 | 3.379504e-50 | -8.615850e-47 |
| Msa0052580 | Msa1436090 | 0.821357 | 4.216088e-53 | -8.615850e-47 |
| Msa0052780 | Msa1436090 | 0.814310 | 1.644084e-51 | -8.615850e-47 |
| Msa0059440 | Msa1436090 | 0.826371 | 2.814207e-54 | -8.615850e-47 |
| Msa0071470 | Msa1436090 | 0.832166 | 1.103829e-55 | -8.615850e-47 |
| Msa0078210 | Msa1436090 | 0.803807 | 2.923235e-49 | -8.615850e-47 |
| Msa0086360 | Msa1436090 | 0.809411 | 1.917413e-50 | -8.615850e-47 |
| Msa0090380 | Msa1436090 | 0.866740 | 2.285813e-65 | -8.615850e-47 |
| Msa0095940 | Msa1436090 | 0.816481 | 5.407376e-52 | -8.615850e-47 |
| Msa0097570 | Msa1436090 | 0.819410 | 1.178643e-52 | -8.615850e-47 |
| Msa0104070 | Msa1436090 | 0.800194 | 1.616083e-48 | -8.615850e-47 |
| Msa0104810 | Msa1436090 | 0.817120 | 3.889016e-52 | -8.615850e-47 |
| Msa0118010 | Msa1436090 | 0.809095 | 2.241731e-50 | -8.615850e-47 |
| Msa0119430 | Msa1436090 | 0.822616 | 2.154078e-53 | -8.615850e-47 |
| Msa1355510 | Msa1436090 | 0.836038 | 1.182313e-56 | -8.615850e-47 |
| Msa1356130 | Msa1436090 | 0.835578 | 1.547007e-56 | -8.615850e-47 |
| Msa1362850 | Msa1436090 | 0.819539 | 1.101568e-52 | -8.615850e-47 |
| Msa1369320 | Msa1436090 | 0.828208 | 1.021242e-54 | -8.615850e-47 |
| Msa1370420 | Msa1436090 | 0.800116 | 1.676001e-48 | -8.615850e-47 |
| Msa1386000 | Msa1436090 | 0.809952 | 1.467275e-50 | -8.615850e-47 |
| Msa1395110 | Msa1436090 | 0.816016 | 6.870303e-52 | -8.615850e-47 |
| Msa1398140 | Msa1436090 | 0.843687 | 1.202444e-58 | -8.615850e-47 |
| Msa1401110 | Msa1436090 | 0.815162 | 1.064751e-51 | -8.615850e-47 |
| Msa1402350 | Msa1436090 | 0.801467 | 8.882016e-49 | -8.615850e-47 |
| Msa1404050 | Msa1436090 | 0.837245 | 5.825025e-57 | -8.615850e-47 |
| Msa1405530 | Msa1436090 | 0.801857 | 7.388394e-49 | -8.615850e-47 |
| Msa1413680 | Msa1436090 | 0.814325 | 1.632086e-51 | -8.615850e-47 |
| Msa1413800 | Msa1436090 | 0.999070 | 1.092904e-288 | -8.615850e-47 |
| Msa1420940 | Msa1436090 | 0.804975 | 1.668324e-49 | -8.615850e-47 |
| Msa1422230 | Msa1436090 | 0.845136 | 4.903015e-59 | -8.615850e-47 |
| Msa1427000 | Msa1436090 | 0.812405 | 4.309690e-51 | -8.615850e-47 |
| Msa1433410 | Msa1436090 | 0.859473 | 4.037871e-63 | -8.615850e-47 |
| Msa1435320 | Msa1436090 | 0.842345 | 2.736379e-58 | -8.615850e-47 |
| Msa1436090 | Msa1438160 | 0.802758 | 4.818285e-49 | -8.615850e-47 |
| Msa1436090 | Msa1439780 | 0.808631 | 2.816984e-50 | -8.615850e-47 |
| Msa1436090 | Msa1443400 | 0.843181 | 1.641014e-58 | -8.615850e-47 |
| Msa1436090 | Msa1443620 | 0.843954 | 1.019424e-58 | -8.615850e-47 |
| Msa1436090 | Msa1443640 | 0.814020 | 1.905233e-51 | -8.615850e-47 |
| Msa1436090 | Msa1448040 | 0.843217 | 1.604720e-58 | -8.615850e-47 |
| Msa1436090 | Msa1455200 | 0.816010 | 6.892721e-52 | -8.615850e-47 |
| Msa0603300 | Msa1436090 | 0.800070 | 1.712472e-48 | -8.615850e-47 |
| Msa0611060 | Msa1436090 | 0.837739 | 4.351152e-57 | -8.615850e-47 |
| Msa0613300 | Msa1436090 | 0.810032 | 1.410281e-50 | -8.615850e-47 |
| Msa0615200 | Msa1436090 | 0.821016 | 5.050633e-53 | -8.615850e-47 |
| Msa0615210 | Msa1436090 | 0.814038 | 1.887924e-51 | -8.615850e-47 |
| Msa0618550 | Msa1436090 | 0.812925 | 3.317186e-51 | -8.615850e-47 |
| Msa0631130 | Msa1436090 | 0.838539 | 2.708268e-57 | -8.615850e-47 |
| Msa0652590 | Msa1436090 | 0.806761 | 7.029273e-50 | -8.615850e-47 |
| Msa0657340 | Msa1436090 | 0.847922 | 8.508800e-60 | -8.615850e-47 |
| Msa0669350 | Msa1436090 | 0.828528 | 8.549524e-55 | -8.615850e-47 |
| Msa0693750 | Msa1436090 | 0.812231 | 4.704642e-51 | -8.615850e-47 |
| Msa0701430 | Msa1436090 | 0.820845 | 5.530075e-53 | -8.615850e-47 |
| Msa0703030 | Msa1436090 | 0.802362 | 5.816090e-49 | -8.615850e-47 |
| Msa0704560 | Msa1436090 | 0.808482 | 3.031374e-50 | -8.615850e-47 |
| Msa0723770 | Msa1436090 | 0.805513 | 1.287287e-49 | -8.615850e-47 |
| Msa0725580 | Msa1436090 | 0.806893 | 6.592876e-50 | -8.615850e-47 |
| Msa0740630 | Msa1436090 | 0.825378 | 4.842767e-54 | -8.615850e-47 |
| Msa0744640 | Msa1436090 | 0.839755 | 1.310945e-57 | -8.615850e-47 |
| Msa0744710 | Msa1436090 | 0.806168 | 9.375106e-50 | -8.615850e-47 |
| Msa0746340 | Msa1436090 | 0.811560 | 6.587277e-51 | -8.615850e-47 |
| Msa0758520 | Msa1436090 | 0.804354 | 2.248911e-49 | -8.615850e-47 |
| Msa0758570 | Msa1436090 | 0.809353 | 1.973647e-50 | -8.615850e-47 |
| Msa0765140 | Msa1436090 | 0.819835 | 9.426546e-53 | -8.615850e-47 |
| Msa0781210 | Msa1436090 | 0.801390 | 9.211468e-49 | -8.615850e-47 |
| Msa0790920 | Msa1436090 | 0.802406 | 5.695209e-49 | -8.615850e-47 |
| Msa0804870 | Msa1436090 | 0.833915 | 4.052604e-56 | -8.615850e-47 |
| Msa0816630 | Msa1436090 | 0.820055 | 8.395746e-53 | -8.615850e-47 |
| Msa0820880 | Msa1436090 | 0.829791 | 4.223632e-55 | -8.615850e-47 |
| Msa0826240 | Msa1436090 | 0.808037 | 3.770106e-50 | -8.615850e-47 |
| Msa0832950 | Msa1436090 | 0.813968 | 1.956545e-51 | -8.615850e-47 |
| Msa0833270 | Msa1436090 | 0.818142 | 2.287503e-52 | -8.615850e-47 |
| Msa0838870 | Msa1436090 | 0.831717 | 1.425281e-55 | -8.615850e-47 |
| Msa0841730 | Msa1436090 | 0.839443 | 1.579468e-57 | -8.615850e-47 |
| Msa0137860 | Msa1436090 | 0.862427 | 5.108829e-64 | -8.615850e-47 |
| Msa0139680 | Msa1436090 | 0.800292 | 1.543073e-48 | -8.615850e-47 |
| Msa0143640 | Msa1436090 | 0.805106 | 1.567032e-49 | -8.615850e-47 |
| Msa0150620 | Msa1436090 | 0.853186 | 2.821807e-61 | -8.615850e-47 |
| Msa0153860 | Msa1436090 | 0.814232 | 1.710739e-51 | -8.615850e-47 |
| Msa0162680 | Msa1436090 | 0.844346 | 8.001226e-59 | -8.615850e-47 |
| Msa0170600 | Msa1436090 | 0.819430 | 1.166122e-52 | -8.615850e-47 |
| Msa0170770 | Msa1436090 | 0.808108 | 3.640975e-50 | -8.615850e-47 |
| Msa0185100 | Msa1436090 | 0.819458 | 1.149457e-52 | -8.615850e-47 |
| Msa0186240 | Msa1436090 | 0.801655 | 8.129172e-49 | -8.615850e-47 |
| Msa0187310 | Msa1436090 | 0.800799 | 1.216382e-48 | -8.615850e-47 |
| Msa0193190 | Msa1436090 | 0.832933 | 7.124615e-56 | -8.615850e-47 |
| Msa0218090 | Msa1436090 | 0.830076 | 3.599881e-55 | -8.615850e-47 |
| Msa0223140 | Msa1436090 | 0.811550 | 6.618612e-51 | -8.615850e-47 |
| Msa0234740 | Msa1436090 | 0.800305 | 1.534053e-48 | -8.615850e-47 |
| Msa1225580 | Msa1436090 | 0.845771 | 3.298079e-59 | -8.615850e-47 |
| Msa1231980 | Msa1436090 | 0.833256 | 5.918838e-56 | -8.615850e-47 |
| Msa1246780 | Msa1436090 | 0.801719 | 7.884715e-49 | -8.615850e-47 |
| Msa1246790 | Msa1436090 | 0.833601 | 4.855386e-56 | -8.615850e-47 |
| Msa1254870 | Msa1436090 | 0.841070 | 5.938922e-58 | -8.615850e-47 |
| Msa1262540 | Msa1436090 | 0.827275 | 1.711443e-54 | -8.615850e-47 |
| Msa1286220 | Msa1436090 | 0.821220 | 4.533014e-53 | -8.615850e-47 |
| Msa1296240 | Msa1436090 | 0.808914 | 2.451031e-50 | -8.615850e-47 |
| Msa1299480 | Msa1436090 | 0.806023 | 1.006166e-49 | -8.615850e-47 |
| Msa1312440 | Msa1436090 | 0.800450 | 1.432940e-48 | -8.615850e-47 |
| Msa1328430 | Msa1436090 | 0.841631 | 4.226475e-58 | -8.615850e-47 |
| Msa0383900 | Msa1436090 | 0.848656 | 5.334963e-60 | -8.615850e-47 |
| Msa0393100 | Msa1436090 | 0.875467 | 3.011737e-68 | -8.615850e-47 |
| Msa0400010 | Msa1436090 | 0.801759 | 7.737671e-49 | -8.615850e-47 |
| Msa0402800 | Msa1436090 | 0.848338 | 6.534150e-60 | -8.615850e-47 |
| Msa0415640 | Msa1436090 | 0.809427 | 1.902497e-50 | -8.615850e-47 |
| Msa0434300 | Msa1436090 | 0.819348 | 1.217328e-52 | -8.615850e-47 |
| Msa0434400 | Msa1436090 | 0.843534 | 1.320840e-58 | -8.615850e-47 |
| Msa0441260 | Msa1436090 | 0.819199 | 1.316215e-52 | -8.615850e-47 |
| Msa0443450 | Msa1436090 | 0.846855 | 1.671343e-59 | -8.615850e-47 |
| Msa0460600 | Msa1436090 | 0.830948 | 2.202956e-55 | -8.615850e-47 |
| Msa0476770 | Msa1436090 | 0.800779 | 1.228075e-48 | -8.615850e-47 |
| Msa1025750 | Msa1436090 | 0.836109 | 1.134354e-56 | -8.615850e-47 |
| Msa1030200 | Msa1436090 | 0.816084 | 6.635598e-52 | -8.615850e-47 |
| Msa1030210 | Msa1436090 | 0.852557 | 4.269765e-61 | -8.615850e-47 |
| Msa1030240 | Msa1436090 | 0.832684 | 8.213587e-56 | -8.615850e-47 |
| Msa1034450 | Msa1436090 | 0.810309 | 1.229125e-50 | -8.615850e-47 |
| Msa1035050 | Msa1436090 | 0.803476 | 3.423239e-49 | -8.615850e-47 |
| Msa1058200 | Msa1436090 | 0.804849 | 1.773182e-49 | -8.615850e-47 |
| Msa1061970 | Msa1436090 | 0.830771 | 2.433640e-55 | -8.615850e-47 |
| Msa1062060 | Msa1436090 | 0.800297 | 1.539573e-48 | -8.615850e-47 |
| Msa1064510 | Msa1436090 | 0.804997 | 1.650844e-49 | -8.615850e-47 |
| Msa1069250 | Msa1436090 | 0.844531 | 7.138688e-59 | -8.615850e-47 |
| Msa1071350 | Msa1436090 | 0.802356 | 5.833938e-49 | -8.615850e-47 |
| Msa1074200 | Msa1436090 | 0.812205 | 4.766672e-51 | -8.615850e-47 |
| Msa1075090 | Msa1436090 | 0.827350 | 1.642653e-54 | -8.615850e-47 |
| Msa1077970 | Msa1436090 | 0.813926 | 1.998847e-51 | -8.615850e-47 |
| Msa1084890 | Msa1436090 | 0.815702 | 8.075654e-52 | -8.615850e-47 |
| Msa1089190 | Msa1436090 | 0.800056 | 1.723362e-48 | -8.615850e-47 |
| Msa1089600 | Msa1436090 | 0.806155 | 9.438522e-50 | -8.615850e-47 |
| Msa1095590 | Msa1436090 | 0.847660 | 1.004721e-59 | -8.615850e-47 |
| Msa1102210 | Msa1436090 | 0.830862 | 2.311745e-55 | -8.615850e-47 |
| Msa1105360 | Msa1436090 | 0.824631 | 7.268318e-54 | -8.615850e-47 |
| Msa1105390 | Msa1436090 | 0.800062 | 1.718458e-48 | -8.615850e-47 |
| Msa0254470 | Msa1436090 | 0.808935 | 2.425006e-50 | -8.615850e-47 |
| Msa0264520 | Msa1436090 | 0.829518 | 4.922768e-55 | -8.615850e-47 |
| Msa0264680 | Msa1436090 | 0.835491 | 1.626624e-56 | -8.615850e-47 |
| Msa0267900 | Msa1436090 | 0.813550 | 2.418630e-51 | -8.615850e-47 |
| Msa0272400 | Msa1436090 | 0.807187 | 5.714387e-50 | -8.615850e-47 |
| Msa0273070 | Msa1436090 | 0.822209 | 2.677362e-53 | -8.615850e-47 |
| Msa0276430 | Msa1436090 | 0.802323 | 5.923346e-49 | -8.615850e-47 |
| Msa0302510 | Msa1436090 | 0.816454 | 5.484151e-52 | -8.615850e-47 |
| Msa0302730 | Msa1436090 | 0.833541 | 5.027538e-56 | -8.615850e-47 |
| Msa0306310 | Msa1436090 | 0.846389 | 2.240031e-59 | -8.615850e-47 |
| Msa0316470 | Msa1436090 | 0.825154 | 5.470662e-54 | -8.615850e-47 |
| Msa0319680 | Msa1436090 | 0.826172 | 3.138995e-54 | -8.615850e-47 |
| Msa0320170 | Msa1436090 | 0.808619 | 2.833998e-50 | -8.615850e-47 |
| Msa0332190 | Msa1436090 | 0.805395 | 1.362701e-49 | -8.615850e-47 |
| Msa0339720 | Msa1436090 | 0.814993 | 1.161081e-51 | -8.615850e-47 |
| Msa0345050 | Msa1436090 | 0.802492 | 5.469189e-49 | -8.615850e-47 |
| Msa0345890 | Msa1436090 | 0.844829 | 5.932475e-59 | -8.615850e-47 |
| Msa0345980 | Msa1436090 | 0.847144 | 1.392616e-59 | -8.615850e-47 |
| Msa1109670 | Msa1436090 | 0.818021 | 2.435343e-52 | -8.615850e-47 |
| Msa1110900 | Msa1436090 | 0.834249 | 3.343324e-56 | -8.615850e-47 |
| Msa1114670 | Msa1436090 | 0.845526 | 3.843597e-59 | -8.615850e-47 |
| Msa1115980 | Msa1436090 | 0.811319 | 7.428888e-51 | -8.615850e-47 |
| Msa1119920 | Msa1436090 | 0.814106 | 1.824241e-51 | -8.615850e-47 |
| Msa1120580 | Msa1436090 | 0.848313 | 6.635583e-60 | -8.615850e-47 |
| Msa1131790 | Msa1436090 | 0.853931 | 1.723705e-61 | -8.615850e-47 |
| Msa1133700 | Msa1436090 | 0.813180 | 2.916199e-51 | -8.615850e-47 |
| Msa1136630 | Msa1436090 | 0.805413 | 1.350977e-49 | -8.615850e-47 |
| Msa1136760 | Msa1436090 | 0.826268 | 2.977295e-54 | -8.615850e-47 |
| Msa1142390 | Msa1436090 | 0.808555 | 2.924643e-50 | -8.615850e-47 |
| Msa1157110 | Msa1436090 | 0.867930 | 9.513829e-66 | -8.615850e-47 |
| Msa1157670 | Msa1436090 | 0.824996 | 5.961886e-54 | -8.615850e-47 |
| Msa1159170 | Msa1436090 | 0.826422 | 2.737204e-54 | -8.615850e-47 |
| Msa1173150 | Msa1436090 | 0.821474 | 3.961565e-53 | -8.615850e-47 |
| Msa1174280 | Msa1436090 | 0.820272 | 7.486160e-53 | -8.615850e-47 |
| Msa1180430 | Msa1436090 | 0.835858 | 1.313637e-56 | -8.615850e-47 |
| Msa1187490 | Msa1436090 | 0.837658 | 4.563690e-57 | -8.615850e-47 |
| Msa1202110 | Msa1436090 | 0.844768 | 6.161065e-59 | -8.615850e-47 |
| Msa1203810 | Msa1436090 | 0.824962 | 6.073600e-54 | -8.615850e-47 |
| Msa1211610 | Msa1436090 | 0.810637 | 1.043865e-50 | -8.615850e-47 |
| Msa1218160 | Msa1436090 | 0.806133 | 9.539518e-50 | -8.615850e-47 |
| Msa1221220 | Msa1436090 | 0.825562 | 4.380110e-54 | -8.615850e-47 |
| Msa1221240 | Msa1436090 | 0.814367 | 1.597248e-51 | -8.615850e-47 |
| Msa0484800 | Msa1436090 | 0.837026 | 6.627321e-57 | -8.615850e-47 |
| Msa0488580 | Msa1436090 | 0.873691 | 1.208357e-67 | -8.615850e-47 |
| Msa0490320 | Msa1436090 | 0.800124 | 1.669370e-48 | -8.615850e-47 |
| Msa0493870 | Msa1436090 | 0.800489 | 1.407076e-48 | -8.615850e-47 |
| Msa0497690 | Msa1436090 | 0.817463 | 3.254905e-52 | -8.615850e-47 |
| Msa0497860 | Msa1436090 | 0.860056 | 2.693988e-63 | -8.615850e-47 |
| Msa0521380 | Msa1436090 | 0.800262 | 1.564826e-48 | -8.615850e-47 |
| Msa0522140 | Msa1436090 | 0.811188 | 7.932919e-51 | -8.615850e-47 |
| Msa0522170 | Msa1436090 | 0.809835 | 1.555105e-50 | -8.615850e-47 |
| Msa0534270 | Msa1436090 | 0.815890 | 7.332713e-52 | -8.615850e-47 |
| Msa0534610 | Msa1436090 | 0.845427 | 4.089047e-59 | -8.615850e-47 |
| Msa0556270 | Msa1436090 | 0.815477 | 9.061534e-52 | -8.615850e-47 |
| Msa0565180 | Msa1436090 | 0.829284 | 5.609260e-55 | -8.615850e-47 |
| Msa0566530 | Msa1436090 | 0.808687 | 2.740883e-50 | -8.615850e-47 |
| Msa0576560 | Msa1436090 | 0.800098 | 1.690530e-48 | -8.615850e-47 |
| Msa0580840 | Msa1436090 | 0.802035 | 6.792023e-49 | -8.615850e-47 |
| Msa0584600 | Msa1436090 | 0.816883 | 4.394592e-52 | -8.615850e-47 |
| Msa0588710 | Msa1436090 | 0.831095 | 2.027291e-55 | -8.615850e-47 |
| Msa0590390 | Msa1436090 | 0.853177 | 2.838460e-61 | -8.615850e-47 |
| Msa0590810 | Msa1436090 | 0.840121 | 1.052128e-57 | -8.615850e-47 |
| Msa0592650 | Msa1436090 | 0.802607 | 5.176763e-49 | -8.615850e-47 |
| Msa0597180 | Msa1436090 | 0.801112 | 1.049915e-48 | -8.615850e-47 |
| Msa0845670 | Msa1436090 | 0.812215 | 4.741409e-51 | -8.615850e-47 |
| Msa0859040 | Msa1436090 | 0.818671 | 1.735151e-52 | -8.615850e-47 |
| Msa0863990 | Msa1436090 | 0.803525 | 3.343621e-49 | -8.615850e-47 |
| Msa0874640 | Msa1436090 | 0.846699 | 1.843593e-59 | -8.615850e-47 |
| Msa0945130 | Msa1436090 | 0.846482 | 2.112726e-59 | -8.615850e-47 |
| Msa0966580 | Msa1436090 | 0.804139 | 2.493652e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436090 | MtrunA17_Chr3g0134881 | 87.448 | 239 | 23 | 2 | 1 | 239 | 1 | 232 | 2.60e-137 | 385 |
| Msa1436090 | MtrunA17_Chr1g0152461 | 40.264 | 303 | 99 | 10 | 1 | 239 | 1 | 285 | 9.50e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436090 | AT1G59590.1 | 36.098 | 205 | 95 | 8 | 19 | 211 | 8 | 188 | 3.78e-30 | 112 |
| Msa1436090 | AT1G10220.1 | 36.898 | 187 | 102 | 6 | 19 | 200 | 4 | 179 | 1.23e-24 | 97.4 |
| Msa1436090 | AT1G10220.2 | 33.862 | 189 | 116 | 4 | 19 | 200 | 4 | 190 | 1.91e-23 | 94.7 |
Find 29 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAACTATCTTTCAAAAT+AGG | 0.247880 | tig0027852:-26373 | None:intergenic |
| GGAAATTGCCACAAACTAAA+TGG | 0.257314 | tig0027852:-25805 | None:intergenic |
| AGAGAAATTGATGAAGAAAA+AGG | 0.259298 | tig0027852:+26399 | Msa1436090:CDS |
| TTTGATCAAGTTCAGATAGA+AGG | 0.288309 | tig0027852:-25943 | None:intergenic |
| CCAAAAGAAAAGACAACAAT+AGG | 0.309829 | tig0027852:+25876 | Msa1436090:CDS |
| TCAAACAAGATTGAAAGCTT+TGG | 0.359242 | tig0027852:+26220 | Msa1436090:CDS |
| ATGGTATATCATCTTCTAAT+TGG | 0.359629 | tig0027852:-25832 | None:intergenic |
| ATGCTTAACCATTTAGTTTG+TGG | 0.373237 | tig0027852:+25797 | Msa1436090:CDS |
| TCTAAGCCTCTTGAAGCATA+AGG | 0.392424 | tig0027852:-25908 | None:intergenic |
| TCAACATGTTTCTGATCCAT+TGG | 0.398061 | tig0027852:-26139 | None:intergenic |
| TTGTTGTTGTTGACTGTGTT+TGG | 0.422356 | tig0027852:+26304 | Msa1436090:CDS |
| GCTTCTAATGATAAGAGATC+TGG | 0.433001 | tig0027852:+26466 | Msa1436090:CDS |
| TATCATCTTCTAATTGGTGT+TGG | 0.486872 | tig0027852:-25826 | None:intergenic |
| CAAGAGTGAAGAACAAGTTA+AGG | 0.497546 | tig0027852:+26090 | Msa1436090:CDS |
| TATCTGAACTTGATCAAAGA+AGG | 0.501411 | tig0027852:+25948 | Msa1436090:CDS |
| AAAATCAATATCACAACAGC+AGG | 0.519128 | tig0027852:-26283 | None:intergenic |
| ATGATGAGATATTTCCAACT+TGG | 0.523515 | tig0027852:-26176 | None:intergenic |
| CAAAAGAAAAGACAACAATA+GGG | 0.523809 | tig0027852:+25877 | Msa1436090:CDS |
| AAAAGGATTATGTTACTGAA+GGG | 0.526034 | tig0027852:+26416 | Msa1436090:CDS |
| AGAAACAAAACAAGCCAAGT+TGG | 0.528975 | tig0027852:+26162 | Msa1436090:CDS |
| TCTCTTTGAATATGTTGAAG+AGG | 0.529203 | tig0027852:+26245 | Msa1436090:CDS |
| TTGATCAAGTTCAGATAGAA+GGG | 0.545038 | tig0027852:-25942 | None:intergenic |
| AATAATCCTTATGCTTCAAG+AGG | 0.562509 | tig0027852:+25902 | Msa1436090:CDS |
| GAAGCTTTAGAATCACCTCT+AGG | 0.571693 | tig0027852:-26448 | None:intergenic |
| CGAACAAAAGATATGTCATG+TGG | 0.588570 | tig0027852:-25995 | None:intergenic |
| ACAGCAGGCACATAGAAAGA+AGG | 0.600782 | tig0027852:-26268 | None:intergenic |
| CGCTTTGTACGTGTATTGTG+TGG | 0.626912 | tig0027852:+26341 | Msa1436090:CDS |
| GAACAAAAGATATGTCATGT+GGG | 0.637973 | tig0027852:-25994 | None:intergenic |
| GAAGGGTTACTTTCTCCTAG+AGG | 0.682377 | tig0027852:+26433 | Msa1436090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGGTATATCATCTTCTAAT+TGG | - | tig0027852:25835-25854 | None:intergenic | 25.0% |
| !! | TTCTTTTGGATTTGGATTTT+GGG | - | tig0027852:25865-25884 | None:intergenic | 25.0% |
| !! | TTTCTTTTGGATTTGGATTT+TGG | - | tig0027852:25866-25885 | None:intergenic | 25.0% |
| ! | CAAAAGAAAAGACAACAATA+GGG | + | tig0027852:25877-25896 | Msa1436090:CDS | 25.0% |
| !! | TTTTTCACTTTGACAACAAT+TGG | - | tig0027852:26049-26068 | None:intergenic | 25.0% |
| ! | TTCGAACTATCTTTCAAAAT+AGG | - | tig0027852:26376-26395 | None:intergenic | 25.0% |
| ! | AGAGAAATTGATGAAGAAAA+AGG | + | tig0027852:26399-26418 | Msa1436090:CDS | 25.0% |
| ! | AAAAAGGATTATGTTACTGA+AGG | + | tig0027852:26415-26434 | Msa1436090:CDS | 25.0% |
| ! | AAAAGGATTATGTTACTGAA+GGG | + | tig0027852:26416-26435 | Msa1436090:CDS | 25.0% |
| !! | ATGCTTAACCATTTAGTTTG+TGG | + | tig0027852:25797-25816 | Msa1436090:CDS | 30.0% |
| TATCATCTTCTAATTGGTGT+TGG | - | tig0027852:25829-25848 | None:intergenic | 30.0% | |
| ! | GTTGTCTTTTCTTTTGGATT+TGG | - | tig0027852:25873-25892 | None:intergenic | 30.0% |
| ! | CCTATTGTTGTCTTTTCTTT+TGG | - | tig0027852:25879-25898 | None:intergenic | 30.0% |
| CCAAAAGAAAAGACAACAAT+AGG | + | tig0027852:25876-25895 | Msa1436090:CDS | 30.0% | |
| AATAATCCTTATGCTTCAAG+AGG | + | tig0027852:25902-25921 | Msa1436090:CDS | 30.0% | |
| TTGATCAAGTTCAGATAGAA+GGG | - | tig0027852:25945-25964 | None:intergenic | 30.0% | |
| TTTGATCAAGTTCAGATAGA+AGG | - | tig0027852:25946-25965 | None:intergenic | 30.0% | |
| TATCTGAACTTGATCAAAGA+AGG | + | tig0027852:25948-25967 | Msa1436090:CDS | 30.0% | |
| GAACAAAAGATATGTCATGT+GGG | - | tig0027852:25997-26016 | None:intergenic | 30.0% | |
| ! | TACATCTTTTTCTGAACCAA+TGG | + | tig0027852:26123-26142 | Msa1436090:CDS | 30.0% |
| ATGATGAGATATTTCCAACT+TGG | - | tig0027852:26179-26198 | None:intergenic | 30.0% | |
| TCAAACAAGATTGAAAGCTT+TGG | + | tig0027852:26220-26239 | Msa1436090:CDS | 30.0% | |
| TCTCTTTGAATATGTTGAAG+AGG | + | tig0027852:26245-26264 | Msa1436090:CDS | 30.0% | |
| AAAATCAATATCACAACAGC+AGG | - | tig0027852:26286-26305 | None:intergenic | 30.0% | |
| GGAAATTGCCACAAACTAAA+TGG | - | tig0027852:25808-25827 | None:intergenic | 35.0% | |
| CGAACAAAAGATATGTCATG+TGG | - | tig0027852:25998-26017 | None:intergenic | 35.0% | |
| CAAGAGTGAAGAACAAGTTA+AGG | + | tig0027852:26090-26109 | Msa1436090:CDS | 35.0% | |
| ! | TCAACATGTTTCTGATCCAT+TGG | - | tig0027852:26142-26161 | None:intergenic | 35.0% |
| AGAAACAAAACAAGCCAAGT+TGG | + | tig0027852:26162-26181 | Msa1436090:CDS | 35.0% | |
| ! | TTGTTGTTGTTGACTGTGTT+TGG | + | tig0027852:26304-26323 | Msa1436090:CDS | 35.0% |
| GCTTCTAATGATAAGAGATC+TGG | + | tig0027852:26466-26485 | Msa1436090:CDS | 35.0% | |
| AACATAGCCAACAAAAAAGC+TGG | + | tig0027852:26491-26510 | Msa1436090:CDS | 35.0% | |
| ! | TTGGATTTTGGGCTTGAACA+TGG | - | tig0027852:25854-25873 | None:intergenic | 40.0% |
| TCTAAGCCTCTTGAAGCATA+AGG | - | tig0027852:25911-25930 | None:intergenic | 40.0% | |
| !! | GAAGCTTTAGAATCACCTCT+AGG | - | tig0027852:26451-26470 | None:intergenic | 40.0% |
| ACAGCAGGCACATAGAAAGA+AGG | - | tig0027852:26271-26290 | None:intergenic | 45.0% | |
| CGCTTTGTACGTGTATTGTG+TGG | + | tig0027852:26341-26360 | Msa1436090:CDS | 45.0% | |
| ! | GAAGGGTTACTTTCTCCTAG+AGG | + | tig0027852:26433-26452 | Msa1436090:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027852 | gene | 25797 | 26516 | 25797 | ID=Msa1436090;Name=Msa1436090 |
| tig0027852 | mRNA | 25797 | 26516 | 25797 | ID=Msa1436090-mRNA-1;Parent=Msa1436090;Name=Msa1436090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|239 |
| tig0027852 | exon | 25797 | 26516 | 25797 | ID=Msa1436090-mRNA-1:exon:10087;Parent=Msa1436090-mRNA-1 |
| tig0027852 | CDS | 25797 | 26516 | 25797 | ID=Msa1436090-mRNA-1:cds;Parent=Msa1436090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
