Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107310 | XP_003623166.1 | 95.833 | 96 | 4 | 0 | 1 | 96 | 1 | 96 | 1.70e-59 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107310 | G7L5L7 | 95.833 | 96 | 4 | 0 | 1 | 96 | 1 | 96 | 8.14e-60 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0424300 | Msa1107310 | 0.801881 | 7.303521e-49 | -8.615850e-47 |
| Msa1006750 | Msa1107310 | 0.820681 | 6.033510e-53 | -8.615850e-47 |
| Msa1061760 | Msa1107310 | 0.860948 | 1.446135e-63 | -8.615850e-47 |
| Msa1061780 | Msa1107310 | 0.808985 | 2.365928e-50 | -8.615850e-47 |
| Msa1061790 | Msa1107310 | 0.832162 | 1.106515e-55 | -8.615850e-47 |
| Msa0267710 | Msa1107310 | 0.844482 | 7.355594e-59 | -8.615850e-47 |
| Msa1107310 | Msa1107320 | 0.865772 | 4.634283e-65 | -8.615850e-47 |
| Msa1107310 | Msa1150860 | 0.877954 | 4.149117e-69 | -8.615850e-47 |
| Msa1107310 | Msa1150870 | 0.862039 | 6.719615e-64 | -8.615850e-47 |
| Msa1107310 | Msa1150880 | 0.888302 | 6.658909e-73 | -8.615850e-47 |
| Msa1107310 | Msa1216120 | 0.800488 | 1.407684e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107310 | MtrunA17_Chr7g0240471 | 95.833 | 96 | 4 | 0 | 1 | 96 | 1 | 96 | 1.57e-63 | 188 |
| Msa1107310 | MtrunA17_Chr7g0240451 | 86.458 | 96 | 13 | 0 | 1 | 96 | 1 | 96 | 2.29e-57 | 173 |
| Msa1107310 | MtrunA17_Chr7g0240441 | 65.574 | 61 | 5 | 1 | 36 | 96 | 29 | 73 | 3.29e-18 | 73.2 |
| Msa1107310 | MtrunA17_Chr8g0368861 | 45.946 | 74 | 38 | 2 | 24 | 96 | 27 | 99 | 1.25e-12 | 59.7 |
| Msa1107310 | MtrunA17_Chr8g0368831 | 44.595 | 74 | 39 | 2 | 24 | 96 | 35 | 107 | 4.94e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107310 | AT3G53980.2 | 62.162 | 74 | 27 | 1 | 23 | 96 | 21 | 93 | 5.38e-28 | 99.0 |
| Msa1107310 | AT3G53980.1 | 62.162 | 74 | 27 | 1 | 23 | 96 | 21 | 93 | 5.38e-28 | 99.0 |
| Msa1107310 | AT5G05960.1 | 53.333 | 90 | 35 | 2 | 7 | 96 | 13 | 95 | 1.67e-26 | 95.5 |
| Msa1107310 | AT2G37870.1 | 42.353 | 85 | 47 | 2 | 11 | 94 | 9 | 92 | 2.45e-14 | 64.3 |
Find 26 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTGAAAACAAACATAAA+TGG | 0.229535 | 7_3:+48823269 | Msa1107310:CDS |
| AGCTTAAATGCTTCCATATC+TGG | 0.280630 | 7_3:-48822306 | None:intergenic |
| CAAGATCCTCACATCTTTAA+CGG | 0.335334 | 7_3:-48823550 | None:intergenic |
| CAACAACCTCAACTCTTTCA+AGG | 0.398597 | 7_3:-48823249 | None:intergenic |
| GATGTTGTTAGCTACTATTA+TGG | 0.425084 | 7_3:+48823302 | Msa1107310:exon |
| TGCTGAAAACAAACATAAAT+GGG | 0.434655 | 7_3:+48823270 | Msa1107310:CDS |
| TCAAACGTTGCTAAAATGTC+TGG | 0.462464 | 7_3:+48822441 | Msa1107310:CDS |
| AAGGGGTACTACACCAGATA+TGG | 0.470603 | 7_3:+48822293 | Msa1107310:CDS |
| GGATAGTAACAGCAATTTGA+GGG | 0.472152 | 7_3:-48822470 | None:intergenic |
| ATGAAGATGCTGTGCCTAGT+TGG | 0.489536 | 7_3:+48822216 | Msa1107310:CDS |
| GGGATAGTAACAGCAATTTG+AGG | 0.508534 | 7_3:-48822471 | None:intergenic |
| AATAAAACATTCTCTTTCTG+TGG | 0.509234 | 7_3:+48823415 | Msa1107310:three_prime_UTR |
| TTTCTTGTTTGTTTATAGTG+TGG | 0.514685 | 7_3:+48823356 | Msa1107310:three_prime_UTR |
| GTTGAAAGTGCAGGTGAATG+TGG | 0.515102 | 7_3:+48822270 | Msa1107310:CDS |
| TCTTGTGCTGCACTTGCACA+AGG | 0.541464 | 7_3:-48822333 | None:intergenic |
| AAAGTGCAGGTGAATGTGGA+AGG | 0.549386 | 7_3:+48822274 | Msa1107310:CDS |
| CAAATTCCGTTAAAGATGTG+AGG | 0.552652 | 7_3:+48823544 | Msa1107310:three_prime_UTR |
| ACTCTTCCTTGAAAGAGTTG+AGG | 0.566469 | 7_3:+48823243 | Msa1107310:CDS |
| AAAACTGCACAAAGACAACT+TGG | 0.590774 | 7_3:-48822414 | None:intergenic |
| ATTCATAGAGTTGAAAGTGC+AGG | 0.591870 | 7_3:+48822261 | Msa1107310:CDS |
| TGTGCTCAGACTAAGAAACT+TGG | 0.591888 | 7_3:+48822384 | Msa1107310:CDS |
| CAAGAACTACAAAACCAACT+AGG | 0.604153 | 7_3:-48822230 | None:intergenic |
| AATACAACACAACTAAGTTG+TGG | 0.625133 | 7_3:-48823328 | None:intergenic |
| GTGTACACAAGTGAGCTGCT+AGG | 0.629312 | 7_3:-48823385 | None:intergenic |
| AGTGCAGGTGAATGTGGAAG+GGG | 0.630405 | 7_3:+48822276 | Msa1107310:CDS |
| AAGTGCAGGTGAATGTGGAA+GGG | 0.641454 | 7_3:+48822275 | Msa1107310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATAAATATAAACTAAA+TGG | - | chr7_3:48822599-48822618 | None:intergenic | 10.0% |
| !! | ATAGAGAAATATATTAATAT+AGG | + | chr7_3:48822725-48822744 | Msa1107310:intron | 10.0% |
| !!! | TTTCATTACATTATTTTTTT+TGG | - | chr7_3:48823092-48823111 | None:intergenic | 10.0% |
| !! | AAGAATAAATATAAACTAAA+TGG | - | chr7_3:48822599-48822618 | None:intergenic | 10.0% |
| !! | ATAGAGAAATATATTAATAT+AGG | + | chr7_3:48822725-48822744 | Msa1107310:intron | 10.0% |
| !!! | TTTCATTACATTATTTTTTT+TGG | - | chr7_3:48823092-48823111 | None:intergenic | 10.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | - | chr7_3:48822810-48822829 | None:intergenic | 15.0% |
| !!! | ATTTTGTAGTTTTTTTTCTT+AGG | - | chr7_3:48822811-48822830 | None:intergenic | 15.0% |
| !!! | TTTTGTAGTTTTTTTTTCTT+AGG | + | chr7_3:48823016-48823035 | Msa1107310:intron | 15.0% |
| !!! | TCAATTAAAATGTTTTAGTA+GGG | - | chr7_3:48823453-48823472 | None:intergenic | 15.0% |
| !!! | ATCAATTAAAATGTTTTAGT+AGG | - | chr7_3:48823454-48823473 | None:intergenic | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | - | chr7_3:48822810-48822829 | None:intergenic | 15.0% |
| !!! | ATTTTGTAGTTTTTTTTCTT+AGG | - | chr7_3:48822811-48822830 | None:intergenic | 15.0% |
| !!! | TTTTGTAGTTTTTTTTTCTT+AGG | + | chr7_3:48823016-48823035 | Msa1107310:intron | 15.0% |
| !!! | TCAATTAAAATGTTTTAGTA+GGG | - | chr7_3:48823453-48823472 | None:intergenic | 15.0% |
| !!! | ATCAATTAAAATGTTTTAGT+AGG | - | chr7_3:48823454-48823473 | None:intergenic | 15.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | - | chr7_3:48822809-48822828 | None:intergenic | 20.0% |
| !!! | TTTTAGTTTTAAATTCATGC+AGG | - | chr7_3:48822892-48822911 | None:intergenic | 20.0% |
| !! | AAACTAAAAAAAATAACACG+TGG | + | chr7_3:48822903-48822922 | Msa1107310:intron | 20.0% |
| !! | AACAACAAAAAAATGTGAAA+CGG | + | chr7_3:48823112-48823131 | Msa1107310:intron | 20.0% |
| !!! | CTATTTGTTAATTTTCTTGA+TGG | + | chr7_3:48823174-48823193 | Msa1107310:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | - | chr7_3:48822809-48822828 | None:intergenic | 20.0% |
| !!! | TTTTAGTTTTAAATTCATGC+AGG | - | chr7_3:48822892-48822911 | None:intergenic | 20.0% |
| !! | AAACTAAAAAAAATAACACG+TGG | + | chr7_3:48822903-48822922 | Msa1107310:intron | 20.0% |
| !! | AACAACAAAAAAATGTGAAA+CGG | + | chr7_3:48823112-48823131 | Msa1107310:intron | 20.0% |
| !!! | CTATTTGTTAATTTTCTTGA+TGG | + | chr7_3:48823174-48823193 | Msa1107310:intron | 20.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | - | chr7_3:48822808-48822827 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTTTTTTCTTAGG+AGG | + | chr7_3:48823019-48823038 | Msa1107310:intron | 25.0% |
| ! | TTGCTGAAAACAAACATAAA+TGG | + | chr7_3:48823269-48823288 | Msa1107310:CDS | 25.0% |
| ! | TGCTGAAAACAAACATAAAT+GGG | + | chr7_3:48823270-48823289 | Msa1107310:CDS | 25.0% |
| !! | TTTCTTGTTTGTTTATAGTG+TGG | + | chr7_3:48823356-48823375 | Msa1107310:three_prime_UTR | 25.0% |
| !!! | AGAGAATGTTTTATTCATGA+GGG | - | chr7_3:48823410-48823429 | None:intergenic | 25.0% |
| !!! | AAGAGAATGTTTTATTCATG+AGG | - | chr7_3:48823411-48823430 | None:intergenic | 25.0% |
| ! | AATAAAACATTCTCTTTCTG+TGG | + | chr7_3:48823415-48823434 | Msa1107310:three_prime_UTR | 25.0% |
| !!! | AACATTTTAATTGATGCTCT+TGG | + | chr7_3:48823459-48823478 | Msa1107310:three_prime_UTR | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | - | chr7_3:48822808-48822827 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTTTTTTCTTAGG+AGG | + | chr7_3:48823019-48823038 | Msa1107310:intron | 25.0% |
| ! | TTGCTGAAAACAAACATAAA+TGG | + | chr7_3:48823269-48823288 | Msa1107310:CDS | 25.0% |
| ! | TGCTGAAAACAAACATAAAT+GGG | + | chr7_3:48823270-48823289 | Msa1107310:CDS | 25.0% |
| !! | TTTCTTGTTTGTTTATAGTG+TGG | + | chr7_3:48823356-48823375 | Msa1107310:three_prime_UTR | 25.0% |
| !!! | AGAGAATGTTTTATTCATGA+GGG | - | chr7_3:48823410-48823429 | None:intergenic | 25.0% |
| !!! | AAGAGAATGTTTTATTCATG+AGG | - | chr7_3:48823411-48823430 | None:intergenic | 25.0% |
| ! | AATAAAACATTCTCTTTCTG+TGG | + | chr7_3:48823415-48823434 | Msa1107310:three_prime_UTR | 25.0% |
| !!! | AACATTTTAATTGATGCTCT+TGG | + | chr7_3:48823459-48823478 | Msa1107310:three_prime_UTR | 25.0% |
| TAGCAAAGTTACAACGTTTA+GGG | - | chr7_3:48822494-48822513 | None:intergenic | 30.0% | |
| TTAGCAAAGTTACAACGTTT+AGG | - | chr7_3:48822495-48822514 | None:intergenic | 30.0% | |
| GACAACTTAAAAGAAACTGA+GGG | - | chr7_3:48822561-48822580 | None:intergenic | 30.0% | |
| GATGTTGTTAGCTACTATTA+TGG | + | chr7_3:48823302-48823321 | Msa1107310:exon | 30.0% | |
| AATACAACACAACTAAGTTG+TGG | - | chr7_3:48823331-48823350 | None:intergenic | 30.0% | |
| TAGCAAAGTTACAACGTTTA+GGG | - | chr7_3:48822494-48822513 | None:intergenic | 30.0% | |
| TTAGCAAAGTTACAACGTTT+AGG | - | chr7_3:48822495-48822514 | None:intergenic | 30.0% | |
| GACAACTTAAAAGAAACTGA+GGG | - | chr7_3:48822561-48822580 | None:intergenic | 30.0% | |
| GATGTTGTTAGCTACTATTA+TGG | + | chr7_3:48823302-48823321 | Msa1107310:exon | 30.0% | |
| AATACAACACAACTAAGTTG+TGG | - | chr7_3:48823331-48823350 | None:intergenic | 30.0% | |
| CAAGAACTACAAAACCAACT+AGG | - | chr7_3:48822233-48822252 | None:intergenic | 35.0% | |
| ! | GTTTTGTAGTTCTTGTTGCA+GGG | + | chr7_3:48822238-48822257 | Msa1107310:CDS | 35.0% |
| ! | ATTCATAGAGTTGAAAGTGC+AGG | + | chr7_3:48822261-48822280 | Msa1107310:CDS | 35.0% |
| AGCTTAAATGCTTCCATATC+TGG | - | chr7_3:48822309-48822328 | None:intergenic | 35.0% | |
| AAAACTGCACAAAGACAACT+TGG | - | chr7_3:48822417-48822436 | None:intergenic | 35.0% | |
| TCAAACGTTGCTAAAATGTC+TGG | + | chr7_3:48822441-48822460 | Msa1107310:CDS | 35.0% | |
| GGATAGTAACAGCAATTTGA+GGG | - | chr7_3:48822473-48822492 | None:intergenic | 35.0% | |
| CGACAACTTAAAAGAAACTG+AGG | - | chr7_3:48822562-48822581 | None:intergenic | 35.0% | |
| CTAAAATCACAACTTCGTGA+AGG | - | chr7_3:48822785-48822804 | None:intergenic | 35.0% | |
| !! | TGCAAAAAAAATTGGCCTTG+GGG | - | chr7_3:48822869-48822888 | None:intergenic | 35.0% |
| !! | GTGCAAAAAAAATTGGCCTT+GGG | - | chr7_3:48822870-48822889 | None:intergenic | 35.0% |
| CATGCAGGTGCAAAAAAAAT+TGG | - | chr7_3:48822877-48822896 | None:intergenic | 35.0% | |
| ! | ACTTTCCAAAGTTGCGATTT+TGG | - | chr7_3:48823045-48823064 | None:intergenic | 35.0% |
| ! | AATCGCAACTTTGGAAAGTT+AGG | + | chr7_3:48823046-48823065 | Msa1107310:intron | 35.0% |
| ! | ATCGCAACTTTGGAAAGTTA+GGG | + | chr7_3:48823047-48823066 | Msa1107310:intron | 35.0% |
| CAAATTCCGTTAAAGATGTG+AGG | + | chr7_3:48823544-48823563 | Msa1107310:three_prime_UTR | 35.0% | |
| CAAGATCCTCACATCTTTAA+CGG | - | chr7_3:48823553-48823572 | None:intergenic | 35.0% | |
| CAAGAACTACAAAACCAACT+AGG | - | chr7_3:48822233-48822252 | None:intergenic | 35.0% | |
| ! | GTTTTGTAGTTCTTGTTGCA+GGG | + | chr7_3:48822238-48822257 | Msa1107310:CDS | 35.0% |
| ! | ATTCATAGAGTTGAAAGTGC+AGG | + | chr7_3:48822261-48822280 | Msa1107310:CDS | 35.0% |
| AGCTTAAATGCTTCCATATC+TGG | - | chr7_3:48822309-48822328 | None:intergenic | 35.0% | |
| AAAACTGCACAAAGACAACT+TGG | - | chr7_3:48822417-48822436 | None:intergenic | 35.0% | |
| TCAAACGTTGCTAAAATGTC+TGG | + | chr7_3:48822441-48822460 | Msa1107310:CDS | 35.0% | |
| GGATAGTAACAGCAATTTGA+GGG | - | chr7_3:48822473-48822492 | None:intergenic | 35.0% | |
| CGACAACTTAAAAGAAACTG+AGG | - | chr7_3:48822562-48822581 | None:intergenic | 35.0% | |
| CTAAAATCACAACTTCGTGA+AGG | - | chr7_3:48822785-48822804 | None:intergenic | 35.0% | |
| !! | TGCAAAAAAAATTGGCCTTG+GGG | - | chr7_3:48822869-48822888 | None:intergenic | 35.0% |
| !! | GTGCAAAAAAAATTGGCCTT+GGG | - | chr7_3:48822870-48822889 | None:intergenic | 35.0% |
| CATGCAGGTGCAAAAAAAAT+TGG | - | chr7_3:48822877-48822896 | None:intergenic | 35.0% | |
| ! | ACTTTCCAAAGTTGCGATTT+TGG | - | chr7_3:48823045-48823064 | None:intergenic | 35.0% |
| ! | AATCGCAACTTTGGAAAGTT+AGG | + | chr7_3:48823046-48823065 | Msa1107310:intron | 35.0% |
| ! | ATCGCAACTTTGGAAAGTTA+GGG | + | chr7_3:48823047-48823066 | Msa1107310:intron | 35.0% |
| CAAATTCCGTTAAAGATGTG+AGG | + | chr7_3:48823544-48823563 | Msa1107310:three_prime_UTR | 35.0% | |
| CAAGATCCTCACATCTTTAA+CGG | - | chr7_3:48823553-48823572 | None:intergenic | 35.0% | |
| !! | GGTTTTGTAGTTCTTGTTGC+AGG | + | chr7_3:48822237-48822256 | Msa1107310:CDS | 40.0% |
| TGTGCTCAGACTAAGAAACT+TGG | + | chr7_3:48822384-48822403 | Msa1107310:CDS | 40.0% | |
| GGGATAGTAACAGCAATTTG+AGG | - | chr7_3:48822474-48822493 | None:intergenic | 40.0% | |
| TCACAACTTCGTGAAGGTTA+GGG | - | chr7_3:48822779-48822798 | None:intergenic | 40.0% | |
| ATCACAACTTCGTGAAGGTT+AGG | - | chr7_3:48822780-48822799 | None:intergenic | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | - | chr7_3:48822836-48822855 | None:intergenic | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr7_3:48822837-48822856 | None:intergenic | 40.0% | |
| GGCTACAGTTGCAAAACTTA+GGG | - | chr7_3:48822838-48822857 | None:intergenic | 40.0% | |
| ! | TTTTGCAACTGTAGCCGTTT+TGG | + | chr7_3:48822842-48822861 | Msa1107310:intron | 40.0% |
| !! | GCAAAAAAAATTGGCCTTGG+GGG | - | chr7_3:48822868-48822887 | None:intergenic | 40.0% |
| ! | GGTGCAAAAAAAATTGGCCT+TGG | - | chr7_3:48822871-48822890 | None:intergenic | 40.0% |
| AACGTAGACCGAGTCAAAAT+TGG | + | chr7_3:48822949-48822968 | Msa1107310:intron | 40.0% | |
| ACTCTTCCTTGAAAGAGTTG+AGG | + | chr7_3:48823243-48823262 | Msa1107310:CDS | 40.0% | |
| CAACAACCTCAACTCTTTCA+AGG | - | chr7_3:48823252-48823271 | None:intergenic | 40.0% | |
| !! | GGTTTTGTAGTTCTTGTTGC+AGG | + | chr7_3:48822237-48822256 | Msa1107310:CDS | 40.0% |
| TGTGCTCAGACTAAGAAACT+TGG | + | chr7_3:48822384-48822403 | Msa1107310:CDS | 40.0% | |
| GGGATAGTAACAGCAATTTG+AGG | - | chr7_3:48822474-48822493 | None:intergenic | 40.0% | |
| TCACAACTTCGTGAAGGTTA+GGG | - | chr7_3:48822779-48822798 | None:intergenic | 40.0% | |
| ATCACAACTTCGTGAAGGTT+AGG | - | chr7_3:48822780-48822799 | None:intergenic | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | - | chr7_3:48822836-48822855 | None:intergenic | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr7_3:48822837-48822856 | None:intergenic | 40.0% | |
| GGCTACAGTTGCAAAACTTA+GGG | - | chr7_3:48822838-48822857 | None:intergenic | 40.0% | |
| ! | TTTTGCAACTGTAGCCGTTT+TGG | + | chr7_3:48822842-48822861 | Msa1107310:intron | 40.0% |
| !! | GCAAAAAAAATTGGCCTTGG+GGG | - | chr7_3:48822868-48822887 | None:intergenic | 40.0% |
| ! | GGTGCAAAAAAAATTGGCCT+TGG | - | chr7_3:48822871-48822890 | None:intergenic | 40.0% |
| AACGTAGACCGAGTCAAAAT+TGG | + | chr7_3:48822949-48822968 | Msa1107310:intron | 40.0% | |
| ACTCTTCCTTGAAAGAGTTG+AGG | + | chr7_3:48823243-48823262 | Msa1107310:CDS | 40.0% | |
| CAACAACCTCAACTCTTTCA+AGG | - | chr7_3:48823252-48823271 | None:intergenic | 40.0% | |
| ATGAAGATGCTGTGCCTAGT+TGG | + | chr7_3:48822216-48822235 | Msa1107310:CDS | 45.0% | |
| ! | GTTGAAAGTGCAGGTGAATG+TGG | + | chr7_3:48822270-48822289 | Msa1107310:CDS | 45.0% |
| AAAGTGCAGGTGAATGTGGA+AGG | + | chr7_3:48822274-48822293 | Msa1107310:CDS | 45.0% | |
| AAGTGCAGGTGAATGTGGAA+GGG | + | chr7_3:48822275-48822294 | Msa1107310:CDS | 45.0% | |
| !! | AAGGGGTACTACACCAGATA+TGG | + | chr7_3:48822293-48822312 | Msa1107310:CDS | 45.0% |
| AACTTTGCTAATCGCCCCAT+TGG | + | chr7_3:48822504-48822523 | Msa1107310:intron | 45.0% | |
| GTCCGCACTTATAACCAATG+GGG | - | chr7_3:48822521-48822540 | None:intergenic | 45.0% | |
| CGTCCGCACTTATAACCAAT+GGG | - | chr7_3:48822522-48822541 | None:intergenic | 45.0% | |
| ACGTCCGCACTTATAACCAA+TGG | - | chr7_3:48822523-48822542 | None:intergenic | 45.0% | |
| ACAACTTCGTGAAGGTTAGG+GGG | - | chr7_3:48822777-48822796 | None:intergenic | 45.0% | |
| CACAACTTCGTGAAGGTTAG+GGG | - | chr7_3:48822778-48822797 | None:intergenic | 45.0% | |
| CGGCTACAGTTGCAAAACTT+AGG | - | chr7_3:48822839-48822858 | None:intergenic | 45.0% | |
| TAACACGTGGCACCTCATAT+AGG | + | chr7_3:48822916-48822935 | Msa1107310:intron | 45.0% | |
| AACACGTGGCACCTCATATA+GGG | + | chr7_3:48822917-48822936 | Msa1107310:intron | 45.0% | |
| TTGATGTGGCACCCTATATG+AGG | - | chr7_3:48822931-48822950 | None:intergenic | 45.0% | |
| !!! | CCTCAAGGCCAATTTTGACT+CGG | - | chr7_3:48822960-48822979 | None:intergenic | 45.0% |
| !! | CGAGTCAAAATTGGCCTTGA+GGG | + | chr7_3:48822958-48822977 | Msa1107310:intron | 45.0% |
| ATGAAGATGCTGTGCCTAGT+TGG | + | chr7_3:48822216-48822235 | Msa1107310:CDS | 45.0% | |
| ! | GTTGAAAGTGCAGGTGAATG+TGG | + | chr7_3:48822270-48822289 | Msa1107310:CDS | 45.0% |
| AAAGTGCAGGTGAATGTGGA+AGG | + | chr7_3:48822274-48822293 | Msa1107310:CDS | 45.0% | |
| AAGTGCAGGTGAATGTGGAA+GGG | + | chr7_3:48822275-48822294 | Msa1107310:CDS | 45.0% | |
| !! | AAGGGGTACTACACCAGATA+TGG | + | chr7_3:48822293-48822312 | Msa1107310:CDS | 45.0% |
| AACTTTGCTAATCGCCCCAT+TGG | + | chr7_3:48822504-48822523 | Msa1107310:intron | 45.0% | |
| GTCCGCACTTATAACCAATG+GGG | - | chr7_3:48822521-48822540 | None:intergenic | 45.0% | |
| CGTCCGCACTTATAACCAAT+GGG | - | chr7_3:48822522-48822541 | None:intergenic | 45.0% | |
| ACGTCCGCACTTATAACCAA+TGG | - | chr7_3:48822523-48822542 | None:intergenic | 45.0% | |
| ACAACTTCGTGAAGGTTAGG+GGG | - | chr7_3:48822777-48822796 | None:intergenic | 45.0% | |
| CACAACTTCGTGAAGGTTAG+GGG | - | chr7_3:48822778-48822797 | None:intergenic | 45.0% | |
| CGGCTACAGTTGCAAAACTT+AGG | - | chr7_3:48822839-48822858 | None:intergenic | 45.0% | |
| TAACACGTGGCACCTCATAT+AGG | + | chr7_3:48822916-48822935 | Msa1107310:intron | 45.0% | |
| AACACGTGGCACCTCATATA+GGG | + | chr7_3:48822917-48822936 | Msa1107310:intron | 45.0% | |
| TTGATGTGGCACCCTATATG+AGG | - | chr7_3:48822931-48822950 | None:intergenic | 45.0% | |
| !!! | CCTCAAGGCCAATTTTGACT+CGG | - | chr7_3:48822960-48822979 | None:intergenic | 45.0% |
| !! | CGAGTCAAAATTGGCCTTGA+GGG | + | chr7_3:48822958-48822977 | Msa1107310:intron | 45.0% |
| AGTGCAGGTGAATGTGGAAG+GGG | + | chr7_3:48822276-48822295 | Msa1107310:CDS | 50.0% | |
| TCTTGTGCTGCACTTGCACA+AGG | - | chr7_3:48822336-48822355 | None:intergenic | 50.0% | |
| ! | CGCCCCATTGGTTATAAGTG+CGG | + | chr7_3:48822516-48822535 | Msa1107310:intron | 50.0% |
| !! | TGACTCGGTCTACGTTGATG+TGG | - | chr7_3:48822945-48822964 | None:intergenic | 50.0% |
| !! | CCGAGTCAAAATTGGCCTTG+AGG | + | chr7_3:48822957-48822976 | Msa1107310:intron | 50.0% |
| !! | TTTTGCACCGGTGGCAGTTT+TGG | - | chr7_3:48822984-48823003 | None:intergenic | 50.0% |
| ! | ACCTCTAAGTTTTGCACCGG+TGG | - | chr7_3:48822993-48823012 | None:intergenic | 50.0% |
| ! | CCGACCTCTAAGTTTTGCAC+CGG | - | chr7_3:48822996-48823015 | None:intergenic | 50.0% |
| CCGGTGCAAAACTTAGAGGT+CGG | + | chr7_3:48822993-48823012 | Msa1107310:intron | 50.0% | |
| GGAGGCCAAAATCGCAACTT+TGG | + | chr7_3:48823037-48823056 | Msa1107310:intron | 50.0% | |
| GTGTACACAAGTGAGCTGCT+AGG | - | chr7_3:48823388-48823407 | None:intergenic | 50.0% | |
| AGTGCAGGTGAATGTGGAAG+GGG | + | chr7_3:48822276-48822295 | Msa1107310:CDS | 50.0% | |
| TCTTGTGCTGCACTTGCACA+AGG | - | chr7_3:48822336-48822355 | None:intergenic | 50.0% | |
| ! | CGCCCCATTGGTTATAAGTG+CGG | + | chr7_3:48822516-48822535 | Msa1107310:intron | 50.0% |
| !! | TGACTCGGTCTACGTTGATG+TGG | - | chr7_3:48822945-48822964 | None:intergenic | 50.0% |
| !! | CCGAGTCAAAATTGGCCTTG+AGG | + | chr7_3:48822957-48822976 | Msa1107310:intron | 50.0% |
| !! | TTTTGCACCGGTGGCAGTTT+TGG | - | chr7_3:48822984-48823003 | None:intergenic | 50.0% |
| ! | ACCTCTAAGTTTTGCACCGG+TGG | - | chr7_3:48822993-48823012 | None:intergenic | 50.0% |
| ! | CCGACCTCTAAGTTTTGCAC+CGG | - | chr7_3:48822996-48823015 | None:intergenic | 50.0% |
| CCGGTGCAAAACTTAGAGGT+CGG | + | chr7_3:48822993-48823012 | Msa1107310:intron | 50.0% | |
| GGAGGCCAAAATCGCAACTT+TGG | + | chr7_3:48823037-48823056 | Msa1107310:intron | 50.0% | |
| GTGTACACAAGTGAGCTGCT+AGG | - | chr7_3:48823388-48823407 | None:intergenic | 50.0% | |
| !! | ATTGGCCTTGGGGGCCAAAA+CGG | - | chr7_3:48822859-48822878 | None:intergenic | 55.0% |
| TTGAGGGCCAAAACTGCCAC+CGG | + | chr7_3:48822974-48822993 | Msa1107310:intron | 55.0% | |
| GCCACCGGTGCAAAACTTAG+AGG | + | chr7_3:48822989-48823008 | Msa1107310:intron | 55.0% | |
| !! | ATTGGCCTTGGGGGCCAAAA+CGG | - | chr7_3:48822859-48822878 | None:intergenic | 55.0% |
| TTGAGGGCCAAAACTGCCAC+CGG | + | chr7_3:48822974-48822993 | Msa1107310:intron | 55.0% | |
| GCCACCGGTGCAAAACTTAG+AGG | + | chr7_3:48822989-48823008 | Msa1107310:intron | 55.0% | |
| !! | TGTAGCCGTTTTGGCCCCCA+AGG | + | chr7_3:48822851-48822870 | Msa1107310:intron | 60.0% |
| !! | GGTGGCAGTTTTGGCCCTCA+AGG | - | chr7_3:48822975-48822994 | None:intergenic | 60.0% |
| !! | TGTAGCCGTTTTGGCCCCCA+AGG | + | chr7_3:48822851-48822870 | Msa1107310:intron | 60.0% |
| !! | GGTGGCAGTTTTGGCCCTCA+AGG | - | chr7_3:48822975-48822994 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 48822204 | 48823574 | 48822204 | ID=Msa1107310;Name=Msa1107310 |
| chr7_3 | mRNA | 48822204 | 48823574 | 48822204 | ID=Msa1107310-mRNA-1;Parent=Msa1107310;Name=Msa1107310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.5|1|1|1|2|271|114 |
| chr7_3 | exon | 48822204 | 48822482 | 48822204 | ID=Msa1107310-mRNA-1:exon:9927;Parent=Msa1107310-mRNA-1 |
| chr7_3 | exon | 48823238 | 48823574 | 48823238 | ID=Msa1107310-mRNA-1:exon:9928;Parent=Msa1107310-mRNA-1 |
| chr7_3 | CDS | 48822204 | 48822482 | 48822204 | ID=Msa1107310-mRNA-1:cds;Parent=Msa1107310-mRNA-1 |
| chr7_3 | CDS | 48823238 | 48823303 | 48823238 | ID=Msa1107310-mRNA-1:cds;Parent=Msa1107310-mRNA-1 |
| chr7_3 | three_prime_UTR | 48823304 | 48823574 | 48823304 | ID=Msa1107310-mRNA-1:three_prime_utr;Parent=Msa1107310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
