Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150870 | XP_003623166.1 | 92.708 | 96 | 5 | 1 | 1 | 94 | 1 | 96 | 2.53e-55 | 178 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150870 | G7L5L7 | 92.708 | 96 | 5 | 1 | 1 | 94 | 1 | 96 | 1.21e-55 | 178 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0034100 | Msa1150870 | -0.802217 | 6.228434e-49 | -8.615850e-47 |
Msa0036550 | Msa1150870 | 0.807261 | 5.510000e-50 | -8.615850e-47 |
Msa0623310 | Msa1150870 | 0.802337 | 5.884760e-49 | -8.615850e-47 |
Msa0659230 | Msa1150870 | 0.810002 | 1.431119e-50 | -8.615850e-47 |
Msa0673940 | Msa1150870 | 0.805373 | 1.377495e-49 | -8.615850e-47 |
Msa0732970 | Msa1150870 | 0.819199 | 1.316276e-52 | -8.615850e-47 |
Msa0773960 | Msa1150870 | 0.808361 | 3.215897e-50 | -8.615850e-47 |
Msa0774360 | Msa1150870 | -0.805918 | 1.058493e-49 | -8.615850e-47 |
Msa0792410 | Msa1150870 | 0.803730 | 3.031717e-49 | -8.615850e-47 |
Msa0812020 | Msa1150870 | -0.802945 | 4.408091e-49 | -8.615850e-47 |
Msa0121320 | Msa1150870 | 0.804906 | 1.724821e-49 | -8.615850e-47 |
Msa0130360 | Msa1150870 | 0.800956 | 1.130154e-48 | -8.615850e-47 |
Msa0136180 | Msa1150870 | -0.804220 | 2.398156e-49 | -8.615850e-47 |
Msa0375550 | Msa1150870 | 0.803356 | 3.624923e-49 | -8.615850e-47 |
Msa0424300 | Msa1150870 | 0.808356 | 3.223863e-50 | -8.615850e-47 |
Msa1006750 | Msa1150870 | 0.816289 | 5.970326e-52 | -8.615850e-47 |
Msa1047300 | Msa1150870 | 0.806174 | 9.348186e-50 | -8.615850e-47 |
Msa1047340 | Msa1150870 | 0.806635 | 7.474009e-50 | -8.615850e-47 |
Msa1061760 | Msa1150870 | 0.854269 | 1.377358e-61 | -8.615850e-47 |
Msa1061780 | Msa1150870 | 0.862072 | 6.563431e-64 | -8.615850e-47 |
Msa1061790 | Msa1150870 | 0.880254 | 6.385736e-70 | -8.615850e-47 |
Msa1061800 | Msa1150870 | 0.813993 | 1.932159e-51 | -8.615850e-47 |
Msa1070630 | Msa1150870 | -0.801863 | 7.365299e-49 | -8.615850e-47 |
Msa0267710 | Msa1150870 | 0.897192 | 1.784746e-76 | -8.615850e-47 |
Msa0307630 | Msa1150870 | 0.807964 | 3.907640e-50 | -8.615850e-47 |
Msa0317300 | Msa1150870 | 0.813597 | 2.361442e-51 | -8.615850e-47 |
Msa0354550 | Msa1150870 | 0.804205 | 2.416047e-49 | -8.615850e-47 |
Msa0358470 | Msa1150870 | 0.820473 | 6.734273e-53 | -8.615850e-47 |
Msa1107280 | Msa1150870 | 0.859567 | 3.781726e-63 | -8.615850e-47 |
Msa1107310 | Msa1150870 | 0.862039 | 6.719615e-64 | -8.615850e-47 |
Msa1107320 | Msa1150870 | 0.878168 | 3.491779e-69 | -8.615850e-47 |
Msa1107330 | Msa1150870 | 0.838257 | 3.201468e-57 | -8.615850e-47 |
Msa1127200 | Msa1150870 | 0.815134 | 1.080011e-51 | -8.615850e-47 |
Msa1130770 | Msa1150870 | 0.807249 | 5.543470e-50 | -8.615850e-47 |
Msa1146980 | Msa1150870 | 0.835160 | 1.972607e-56 | -8.615850e-47 |
Msa1150860 | Msa1150870 | 0.883428 | 4.524556e-71 | -8.615850e-47 |
Msa1150870 | Msa1150880 | 0.887210 | 1.742309e-72 | -8.615850e-47 |
Msa1150870 | Msa1184680 | 0.833724 | 4.525421e-56 | -8.615850e-47 |
Msa1150870 | Msa1186260 | 0.802653 | 5.066701e-49 | -8.615850e-47 |
Msa1150870 | Msa1259560 | 0.802109 | 6.556360e-49 | -8.615850e-47 |
Msa1150870 | Msa1273320 | 0.811080 | 8.370595e-51 | -8.615850e-47 |
Msa1150870 | Msa1373560 | 0.812530 | 4.048074e-51 | -8.615850e-47 |
Msa1150870 | Msa1376310 | 0.800250 | 1.573888e-48 | -8.615850e-47 |
Msa1150870 | Msa1395720 | 0.810830 | 9.482169e-51 | -8.615850e-47 |
Msa1150870 | Msa1400290 | -0.809028 | 2.317015e-50 | -8.615850e-47 |
Msa1150870 | Msa1407810 | 0.806604 | 7.587278e-50 | -8.615850e-47 |
Msa1150870 | Msa1409060 | 0.809057 | 2.284157e-50 | -8.615850e-47 |
Msa1150870 | Msa1437780 | 0.806684 | 7.300173e-50 | -8.615850e-47 |
Msa1150870 | Msa1447900 | 0.809902 | 1.503966e-50 | -8.615850e-47 |
Msa1150870 | Msa1462610 | 0.805441 | 1.332897e-49 | -8.615850e-47 |
Msa0515930 | Msa1150870 | 0.805122 | 1.554718e-49 | -8.615850e-47 |
Msa0526150 | Msa1150870 | 0.802445 | 5.590375e-49 | -8.615850e-47 |
Msa0567330 | Msa1150870 | 0.817029 | 4.075081e-52 | -8.615850e-47 |
Msa0567570 | Msa1150870 | 0.803403 | 3.545229e-49 | -8.615850e-47 |
Msa0576320 | Msa1150870 | 0.818441 | 1.956906e-52 | -8.615850e-47 |
Msa0587180 | Msa1150870 | 0.801337 | 9.441581e-49 | -8.615850e-47 |
Msa0852090 | Msa1150870 | -0.800483 | 1.411004e-48 | -8.615850e-47 |
Msa0921860 | Msa1150870 | 0.827372 | 1.622225e-54 | -8.615850e-47 |
Msa0970100 | Msa1150870 | 0.803380 | 3.583780e-49 | -8.615850e-47 |
Msa0978530 | Msa1150870 | 0.802588 | 5.223953e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150870 | MtrunA17_Chr7g0240471 | 92.708 | 96 | 5 | 1 | 1 | 94 | 1 | 96 | 2.32e-59 | 178 |
Msa1150870 | MtrunA17_Chr7g0240451 | 83.333 | 96 | 14 | 1 | 1 | 94 | 1 | 96 | 2.71e-53 | 162 |
Msa1150870 | MtrunA17_Chr7g0240441 | 65.574 | 61 | 5 | 1 | 34 | 94 | 29 | 73 | 3.58e-18 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150870 | AT3G53980.2 | 62.319 | 69 | 25 | 1 | 26 | 94 | 26 | 93 | 1.39e-25 | 92.8 |
Msa1150870 | AT3G53980.1 | 62.319 | 69 | 25 | 1 | 26 | 94 | 26 | 93 | 1.39e-25 | 92.8 |
Msa1150870 | AT5G05960.1 | 52.273 | 88 | 37 | 2 | 7 | 94 | 13 | 95 | 3.51e-25 | 92.0 |
Msa1150870 | AT2G37870.1 | 40.000 | 85 | 47 | 3 | 11 | 92 | 9 | 92 | 4.92e-11 | 55.8 |
Find 26 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGATGAAAACAAACATAAA+TGG | 0.241413 | 7_4:-34705703 | Msa1150870:CDS |
AGCTTAAATGCTTCCATATC+TGG | 0.280630 | 7_4:+34706321 | None:intergenic |
CAACAACCTCAACTCTTTCA+AGG | 0.388840 | 7_4:+34705723 | None:intergenic |
GTGAAGATGCTGTGCCTAGT+TGG | 0.440569 | 7_4:-34706411 | Msa1150870:CDS |
AAGGGGTACCACACCAGATA+TGG | 0.445913 | 7_4:-34706334 | Msa1150870:CDS |
TGATGAAAACAAACATAAAT+GGG | 0.460009 | 7_4:-34705702 | Msa1150870:CDS |
TCAAACGTTGCTAAAATGTC+TGG | 0.462464 | 7_4:-34706186 | Msa1150870:CDS |
GATGCTGTTAGCTACTAGTA+TGG | 0.463264 | 7_4:-34705670 | Msa1150870:three_prime_UTR |
GGATAGTAACAGCAATTTGA+GGG | 0.472152 | 7_4:+34706157 | None:intergenic |
CAAGATCCTCACATGTTTAG+CGG | 0.498681 | 7_4:+34705421 | None:intergenic |
GGGATAGTAACAGCAATTTG+AGG | 0.508534 | 7_4:+34706156 | None:intergenic |
GTTGAAAGTGCAGGTGAATG+TGG | 0.515102 | 7_4:-34706357 | Msa1150870:intron |
AATAAAACATGCTCTTTCAG+TGG | 0.535975 | 7_4:-34705561 | Msa1150870:three_prime_UTR |
TCTTGTGCTGCACTTGCACA+AGG | 0.541464 | 7_4:+34706294 | None:intergenic |
AAAGTGCAGGTGAATGTGGA+AGG | 0.549386 | 7_4:-34706353 | Msa1150870:intron |
ATCTTTATCAACTATTGTAA+CGG | 0.556242 | 7_4:+34705479 | None:intergenic |
TAACTTTGTTGTTTATAGTG+TGG | 0.565157 | 7_4:-34705620 | Msa1150870:three_prime_UTR |
ACTCTTCCTTGAAAGAGTTG+AGG | 0.566469 | 7_4:-34705729 | Msa1150870:CDS |
AAAACTGCACAAAGACAACT+TGG | 0.590774 | 7_4:+34706213 | None:intergenic |
TGTGCTCAGACTAAGAAACT+TGG | 0.591888 | 7_4:-34706243 | Msa1150870:CDS |
CAAGAACTACAAAACCAACT+AGG | 0.604153 | 7_4:+34706397 | None:intergenic |
AAATGCTTCCATATCTGGTG+TGG | 0.609029 | 7_4:+34706326 | None:intergenic |
CGAATTCCGCTAAACATGTG+AGG | 0.618333 | 7_4:-34705427 | Msa1150870:three_prime_UTR |
AATACAACACAACTAAGTTG+TGG | 0.625133 | 7_4:+34705644 | None:intergenic |
AGTGCAGGTGAATGTGGAAG+GGG | 0.630405 | 7_4:-34706351 | Msa1150870:intron |
AAGTGCAGGTGAATGTGGAA+GGG | 0.641454 | 7_4:-34706352 | Msa1150870:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTAACATTAATTATTGAT+AGG | - | chr7_4:34705847-34705866 | Msa1150870:intron | 15.0% |
!! | ATGTAACATTAATTATTGAT+AGG | - | chr7_4:34705847-34705866 | Msa1150870:intron | 15.0% |
!! | AATGAGATTATAGATAGTTA+AGG | - | chr7_4:34705873-34705892 | Msa1150870:intron | 20.0% |
!! | ATGAGATTATAGATAGTTAA+GGG | - | chr7_4:34705874-34705893 | Msa1150870:intron | 20.0% |
!!! | TTGTTAAAATCTTCCTTTTA+TGG | - | chr7_4:34705947-34705966 | Msa1150870:intron | 20.0% |
!!! | TATGATTTTAGTTCCATAAA+AGG | + | chr7_4:34705963-34705982 | None:intergenic | 20.0% |
!!! | CTATTTGTTAATTTTCTTGA+TGG | - | chr7_4:34706044-34706063 | Msa1150870:intron | 20.0% |
!! | TTGATGAAAACAAACATAAA+TGG | - | chr7_4:34706139-34706158 | Msa1150870:intron | 20.0% |
!! | TGATGAAAACAAACATAAAT+GGG | - | chr7_4:34706140-34706159 | Msa1150870:intron | 20.0% |
!! | ATCTTTATCAACTATTGTAA+CGG | + | chr7_4:34706366-34706385 | None:intergenic | 20.0% |
!! | AATGAGATTATAGATAGTTA+AGG | - | chr7_4:34705873-34705892 | Msa1150870:intron | 20.0% |
!! | ATGAGATTATAGATAGTTAA+GGG | - | chr7_4:34705874-34705893 | Msa1150870:intron | 20.0% |
!!! | TTGTTAAAATCTTCCTTTTA+TGG | - | chr7_4:34705947-34705966 | Msa1150870:intron | 20.0% |
!!! | TATGATTTTAGTTCCATAAA+AGG | + | chr7_4:34705963-34705982 | None:intergenic | 20.0% |
!!! | CTATTTGTTAATTTTCTTGA+TGG | - | chr7_4:34706044-34706063 | Msa1150870:intron | 20.0% |
!! | TTGATGAAAACAAACATAAA+TGG | - | chr7_4:34706139-34706158 | Msa1150870:intron | 20.0% |
!! | TGATGAAAACAAACATAAAT+GGG | - | chr7_4:34706140-34706159 | Msa1150870:intron | 20.0% |
!! | ATCTTTATCAACTATTGTAA+CGG | + | chr7_4:34706366-34706385 | None:intergenic | 20.0% |
!!! | TAGATAGTTAAGGGTATTAT+AGG | - | chr7_4:34705883-34705902 | Msa1150870:intron | 25.0% |
!!! | TAACTTTGTTGTTTATAGTG+TGG | - | chr7_4:34706222-34706241 | Msa1150870:CDS | 25.0% |
!!! | ATCGACTAAAAAGTTTTAGT+AGG | + | chr7_4:34706320-34706339 | None:intergenic | 25.0% |
!!! | TAGATAGTTAAGGGTATTAT+AGG | - | chr7_4:34705883-34705902 | Msa1150870:intron | 25.0% |
!!! | TAACTTTGTTGTTTATAGTG+TGG | - | chr7_4:34706222-34706241 | Msa1150870:CDS | 25.0% |
!!! | ATCGACTAAAAAGTTTTAGT+AGG | + | chr7_4:34706320-34706339 | None:intergenic | 25.0% |
! | TACCGTTTCACATTTTTCTT+GGG | + | chr7_4:34705992-34706011 | None:intergenic | 30.0% |
AATACAACACAACTAAGTTG+TGG | + | chr7_4:34706201-34706220 | None:intergenic | 30.0% | |
!! | AGAGCATGTTTTATTCATGA+GGG | + | chr7_4:34706276-34706295 | None:intergenic | 30.0% |
!! | AAGAGCATGTTTTATTCATG+AGG | + | chr7_4:34706277-34706296 | None:intergenic | 30.0% |
AATAAAACATGCTCTTTCAG+TGG | - | chr7_4:34706281-34706300 | Msa1150870:CDS | 30.0% | |
! | TACCGTTTCACATTTTTCTT+GGG | + | chr7_4:34705992-34706011 | None:intergenic | 30.0% |
AATACAACACAACTAAGTTG+TGG | + | chr7_4:34706201-34706220 | None:intergenic | 30.0% | |
!! | AGAGCATGTTTTATTCATGA+GGG | + | chr7_4:34706276-34706295 | None:intergenic | 30.0% |
!! | AAGAGCATGTTTTATTCATG+AGG | + | chr7_4:34706277-34706296 | None:intergenic | 30.0% |
AATAAAACATGCTCTTTCAG+TGG | - | chr7_4:34706281-34706300 | Msa1150870:CDS | 30.0% | |
CAAGAACTACAAAACCAACT+AGG | + | chr7_4:34705448-34705467 | None:intergenic | 35.0% | |
! | GTTTTGTAGTTCTTGTTGCA+GGG | - | chr7_4:34705453-34705472 | Msa1150870:three_prime_UTR | 35.0% |
! | ATTCATAGAGTTGAAAGTGC+AGG | - | chr7_4:34705476-34705495 | Msa1150870:three_prime_UTR | 35.0% |
AGCTTAAATGCTTCCATATC+TGG | + | chr7_4:34705524-34705543 | None:intergenic | 35.0% | |
AAAACTGCACAAAGACAACT+TGG | + | chr7_4:34705632-34705651 | None:intergenic | 35.0% | |
TCAAACGTTGCTAAAATGTC+TGG | - | chr7_4:34705656-34705675 | Msa1150870:three_prime_UTR | 35.0% | |
GGATAGTAACAGCAATTTGA+GGG | + | chr7_4:34705688-34705707 | None:intergenic | 35.0% | |
TAAGTAACTAACAAGTCCCT+CGG | - | chr7_4:34705757-34705776 | Msa1150870:intron | 35.0% | |
GACAACTTAAAAGAAACCGA+GGG | + | chr7_4:34705776-34705795 | None:intergenic | 35.0% | |
TGCCCAAGAAAAATGTGAAA+CGG | - | chr7_4:34705987-34706006 | Msa1150870:intron | 35.0% | |
! | GTACCGTTTCACATTTTTCT+TGG | + | chr7_4:34705993-34706012 | None:intergenic | 35.0% |
CAAGAACTACAAAACCAACT+AGG | + | chr7_4:34705448-34705467 | None:intergenic | 35.0% | |
! | GTTTTGTAGTTCTTGTTGCA+GGG | - | chr7_4:34705453-34705472 | Msa1150870:three_prime_UTR | 35.0% |
! | ATTCATAGAGTTGAAAGTGC+AGG | - | chr7_4:34705476-34705495 | Msa1150870:three_prime_UTR | 35.0% |
AGCTTAAATGCTTCCATATC+TGG | + | chr7_4:34705524-34705543 | None:intergenic | 35.0% | |
AAAACTGCACAAAGACAACT+TGG | + | chr7_4:34705632-34705651 | None:intergenic | 35.0% | |
TCAAACGTTGCTAAAATGTC+TGG | - | chr7_4:34705656-34705675 | Msa1150870:three_prime_UTR | 35.0% | |
GGATAGTAACAGCAATTTGA+GGG | + | chr7_4:34705688-34705707 | None:intergenic | 35.0% | |
TAAGTAACTAACAAGTCCCT+CGG | - | chr7_4:34705757-34705776 | Msa1150870:intron | 35.0% | |
GACAACTTAAAAGAAACCGA+GGG | + | chr7_4:34705776-34705795 | None:intergenic | 35.0% | |
TGCCCAAGAAAAATGTGAAA+CGG | - | chr7_4:34705987-34706006 | Msa1150870:intron | 35.0% | |
! | GTACCGTTTCACATTTTTCT+TGG | + | chr7_4:34705993-34706012 | None:intergenic | 35.0% |
!! | GGTTTTGTAGTTCTTGTTGC+AGG | - | chr7_4:34705452-34705471 | Msa1150870:three_prime_UTR | 40.0% |
AAATGCTTCCATATCTGGTG+TGG | + | chr7_4:34705519-34705538 | None:intergenic | 40.0% | |
TGTGCTCAGACTAAGAAACT+TGG | - | chr7_4:34705599-34705618 | Msa1150870:three_prime_UTR | 40.0% | |
GGGATAGTAACAGCAATTTG+AGG | + | chr7_4:34705689-34705708 | None:intergenic | 40.0% | |
TAGCAAAGTTGCAGCGTTTA+GGG | + | chr7_4:34705709-34705728 | None:intergenic | 40.0% | |
TTAGCAAAGTTGCAGCGTTT+AGG | + | chr7_4:34705710-34705729 | None:intergenic | 40.0% | |
CGACAACTTAAAAGAAACCG+AGG | + | chr7_4:34705777-34705796 | None:intergenic | 40.0% | |
ACTCTTCCTTGAAAGAGTTG+AGG | - | chr7_4:34706113-34706132 | Msa1150870:intron | 40.0% | |
CAACAACCTCAACTCTTTCA+AGG | + | chr7_4:34706122-34706141 | None:intergenic | 40.0% | |
GATGCTGTTAGCTACTAGTA+TGG | - | chr7_4:34706172-34706191 | Msa1150870:CDS | 40.0% | |
CAAGATCCTCACATGTTTAG+CGG | + | chr7_4:34706424-34706443 | None:intergenic | 40.0% | |
!! | GGTTTTGTAGTTCTTGTTGC+AGG | - | chr7_4:34705452-34705471 | Msa1150870:three_prime_UTR | 40.0% |
AAATGCTTCCATATCTGGTG+TGG | + | chr7_4:34705519-34705538 | None:intergenic | 40.0% | |
TGTGCTCAGACTAAGAAACT+TGG | - | chr7_4:34705599-34705618 | Msa1150870:three_prime_UTR | 40.0% | |
GGGATAGTAACAGCAATTTG+AGG | + | chr7_4:34705689-34705708 | None:intergenic | 40.0% | |
TAGCAAAGTTGCAGCGTTTA+GGG | + | chr7_4:34705709-34705728 | None:intergenic | 40.0% | |
TTAGCAAAGTTGCAGCGTTT+AGG | + | chr7_4:34705710-34705729 | None:intergenic | 40.0% | |
CGACAACTTAAAAGAAACCG+AGG | + | chr7_4:34705777-34705796 | None:intergenic | 40.0% | |
ACTCTTCCTTGAAAGAGTTG+AGG | - | chr7_4:34706113-34706132 | Msa1150870:intron | 40.0% | |
CAACAACCTCAACTCTTTCA+AGG | + | chr7_4:34706122-34706141 | None:intergenic | 40.0% | |
GATGCTGTTAGCTACTAGTA+TGG | - | chr7_4:34706172-34706191 | Msa1150870:CDS | 40.0% | |
CAAGATCCTCACATGTTTAG+CGG | + | chr7_4:34706424-34706443 | None:intergenic | 40.0% | |
! | GTTGAAAGTGCAGGTGAATG+TGG | - | chr7_4:34705485-34705504 | Msa1150870:three_prime_UTR | 45.0% |
AAAGTGCAGGTGAATGTGGA+AGG | - | chr7_4:34705489-34705508 | Msa1150870:three_prime_UTR | 45.0% | |
AAGTGCAGGTGAATGTGGAA+GGG | - | chr7_4:34705490-34705509 | Msa1150870:three_prime_UTR | 45.0% | |
AACTTTGCTAATCGCCCCAT+TGG | - | chr7_4:34705719-34705738 | Msa1150870:CDS | 45.0% | |
GTCCGCACTTATAACCAATG+GGG | + | chr7_4:34705736-34705755 | None:intergenic | 45.0% | |
CGTCCGCACTTATAACCAAT+GGG | + | chr7_4:34705737-34705756 | None:intergenic | 45.0% | |
ACGTCCGCACTTATAACCAA+TGG | + | chr7_4:34705738-34705757 | None:intergenic | 45.0% | |
CGAATTCCGCTAAACATGTG+AGG | - | chr7_4:34706415-34706434 | Msa1150870:CDS | 45.0% | |
! | GTTGAAAGTGCAGGTGAATG+TGG | - | chr7_4:34705485-34705504 | Msa1150870:three_prime_UTR | 45.0% |
AAAGTGCAGGTGAATGTGGA+AGG | - | chr7_4:34705489-34705508 | Msa1150870:three_prime_UTR | 45.0% | |
AAGTGCAGGTGAATGTGGAA+GGG | - | chr7_4:34705490-34705509 | Msa1150870:three_prime_UTR | 45.0% | |
AACTTTGCTAATCGCCCCAT+TGG | - | chr7_4:34705719-34705738 | Msa1150870:CDS | 45.0% | |
GTCCGCACTTATAACCAATG+GGG | + | chr7_4:34705736-34705755 | None:intergenic | 45.0% | |
CGTCCGCACTTATAACCAAT+GGG | + | chr7_4:34705737-34705756 | None:intergenic | 45.0% | |
ACGTCCGCACTTATAACCAA+TGG | + | chr7_4:34705738-34705757 | None:intergenic | 45.0% | |
CGAATTCCGCTAAACATGTG+AGG | - | chr7_4:34706415-34706434 | Msa1150870:CDS | 45.0% | |
GTGAAGATGCTGTGCCTAGT+TGG | - | chr7_4:34705431-34705450 | Msa1150870:three_prime_UTR | 50.0% | |
AGTGCAGGTGAATGTGGAAG+GGG | - | chr7_4:34705491-34705510 | Msa1150870:three_prime_UTR | 50.0% | |
!! | AAGGGGTACCACACCAGATA+TGG | - | chr7_4:34705508-34705527 | Msa1150870:three_prime_UTR | 50.0% |
TCTTGTGCTGCACTTGCACA+AGG | + | chr7_4:34705551-34705570 | None:intergenic | 50.0% | |
! | CGCCCCATTGGTTATAAGTG+CGG | - | chr7_4:34705731-34705750 | Msa1150870:CDS | 50.0% |
GTGAAGATGCTGTGCCTAGT+TGG | - | chr7_4:34705431-34705450 | Msa1150870:three_prime_UTR | 50.0% | |
AGTGCAGGTGAATGTGGAAG+GGG | - | chr7_4:34705491-34705510 | Msa1150870:three_prime_UTR | 50.0% | |
!! | AAGGGGTACCACACCAGATA+TGG | - | chr7_4:34705508-34705527 | Msa1150870:three_prime_UTR | 50.0% |
TCTTGTGCTGCACTTGCACA+AGG | + | chr7_4:34705551-34705570 | None:intergenic | 50.0% | |
! | CGCCCCATTGGTTATAAGTG+CGG | - | chr7_4:34705731-34705750 | Msa1150870:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 34705419 | 34706445 | 34705419 | ID=Msa1150870;Name=Msa1150870 |
chr7_4 | mRNA | 34705419 | 34706445 | 34705419 | ID=Msa1150870-mRNA-1;Parent=Msa1150870;Name=Msa1150870-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0.33|1|0|0.33|3|272|112 |
chr7_4 | exon | 34705419 | 34705756 | 34705419 | ID=Msa1150870-mRNA-1:exon:8246;Parent=Msa1150870-mRNA-1 |
chr7_4 | exon | 34706167 | 34706366 | 34706167 | ID=Msa1150870-mRNA-1:exon:8245;Parent=Msa1150870-mRNA-1 |
chr7_4 | exon | 34706373 | 34706445 | 34706373 | ID=Msa1150870-mRNA-1:exon:8244;Parent=Msa1150870-mRNA-1 |
chr7_4 | CDS | 34706373 | 34706445 | 34706373 | ID=Msa1150870-mRNA-1:cds;Parent=Msa1150870-mRNA-1 |
chr7_4 | CDS | 34706167 | 34706366 | 34706167 | ID=Msa1150870-mRNA-1:cds;Parent=Msa1150870-mRNA-1 |
chr7_4 | CDS | 34705691 | 34705756 | 34705691 | ID=Msa1150870-mRNA-1:cds;Parent=Msa1150870-mRNA-1 |
chr7_4 | three_prime_UTR | 34705419 | 34705690 | 34705419 | ID=Msa1150870-mRNA-1:three_prime_utr;Parent=Msa1150870-mRNA-1 |
Gene Sequence |
Protein sequence |