Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110960 | XP_003623719.1 | 91.586 | 309 | 22 | 1 | 6 | 314 | 22 | 326 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110960 | sp|Q40316|VESTR_MEDSA | 68.881 | 286 | 89 | 0 | 29 | 314 | 41 | 326 | 1.29e-147 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110960 | A2Q3Y3 | 91.586 | 309 | 22 | 1 | 6 | 314 | 22 | 326 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054250 | Msa1110960 | 0.818294 | 2.112582e-52 | -8.615850e-47 |
| Msa0054310 | Msa1110960 | 0.805061 | 1.600672e-49 | -8.615850e-47 |
| Msa0055730 | Msa1110960 | 0.813434 | 2.564660e-51 | -8.615850e-47 |
| Msa0737520 | Msa1110960 | 0.809925 | 1.486683e-50 | -8.615850e-47 |
| Msa0818010 | Msa1110960 | 0.806277 | 8.896516e-50 | -8.615850e-47 |
| Msa0148720 | Msa1110960 | 0.809869 | 1.529103e-50 | -8.615850e-47 |
| Msa1027240 | Msa1110960 | 0.827529 | 1.488062e-54 | -8.615850e-47 |
| Msa1077950 | Msa1110960 | 0.868826 | 4.891661e-66 | -8.615850e-47 |
| Msa0865370 | Msa1110960 | 0.808041 | 3.764076e-50 | -8.615850e-47 |
| Msa0865390 | Msa1110960 | 0.811785 | 5.885419e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110960 | MtrunA17_Chr7g0245741 | 91.586 | 309 | 22 | 1 | 6 | 314 | 22 | 326 | 0.0 | 576 |
| Msa1110960 | MtrunA17_Chr7g0245711 | 90.278 | 288 | 28 | 0 | 27 | 314 | 1 | 288 | 0.0 | 542 |
| Msa1110960 | MtrunA17_Chr7g0245731 | 91.228 | 285 | 25 | 0 | 30 | 314 | 92 | 376 | 0.0 | 542 |
| Msa1110960 | MtrunA17_Chr7g0245641 | 77.352 | 287 | 63 | 1 | 30 | 314 | 80 | 366 | 7.21e-170 | 476 |
| Msa1110960 | MtrunA17_Chr7g0245671 | 75.347 | 288 | 68 | 2 | 30 | 314 | 42 | 329 | 1.24e-162 | 456 |
| Msa1110960 | MtrunA17_Chr7g0245691 | 74.306 | 288 | 71 | 1 | 30 | 314 | 43 | 330 | 1.34e-162 | 456 |
| Msa1110960 | MtrunA17_Chr7g0245631 | 68.881 | 286 | 89 | 0 | 29 | 314 | 41 | 326 | 1.39e-148 | 420 |
| Msa1110960 | MtrunA17_Chr4g0010991 | 48.264 | 288 | 147 | 2 | 29 | 314 | 42 | 329 | 4.15e-88 | 266 |
| Msa1110960 | MtrunA17_Chr1g0155411 | 44.561 | 285 | 154 | 3 | 32 | 314 | 43 | 325 | 2.25e-81 | 249 |
| Msa1110960 | MtrunA17_Chr1g0155431 | 45.263 | 285 | 152 | 3 | 32 | 314 | 43 | 325 | 3.05e-79 | 244 |
| Msa1110960 | MtrunA17_Chr4g0048961 | 38.267 | 277 | 159 | 3 | 46 | 312 | 62 | 336 | 4.10e-63 | 203 |
| Msa1110960 | MtrunA17_Chr4g0042101 | 35.077 | 325 | 180 | 8 | 9 | 314 | 41 | 353 | 1.63e-60 | 197 |
| Msa1110960 | MtrunA17_Chr5g0423551 | 34.386 | 285 | 177 | 7 | 34 | 314 | 41 | 319 | 1.77e-53 | 177 |
| Msa1110960 | MtrunA17_Chr2g0331211 | 37.113 | 291 | 168 | 9 | 30 | 314 | 38 | 319 | 6.96e-53 | 176 |
| Msa1110960 | MtrunA17_Chr8g0363831 | 34.276 | 283 | 172 | 7 | 34 | 311 | 46 | 319 | 1.27e-45 | 157 |
| Msa1110960 | MtrunA17_Chr3g0077231 | 32.302 | 291 | 178 | 7 | 32 | 314 | 41 | 320 | 6.19e-45 | 155 |
| Msa1110960 | MtrunA17_Chr2g0281991 | 33.660 | 306 | 178 | 8 | 29 | 314 | 40 | 340 | 4.53e-44 | 154 |
| Msa1110960 | MtrunA17_Chr3g0106111 | 34.589 | 292 | 168 | 8 | 33 | 314 | 41 | 319 | 9.76e-44 | 152 |
| Msa1110960 | MtrunA17_Chr8g0364051 | 32.639 | 288 | 180 | 7 | 32 | 314 | 43 | 321 | 2.59e-41 | 146 |
| Msa1110960 | MtrunA17_Chr5g0431311 | 33.898 | 295 | 170 | 9 | 31 | 314 | 39 | 319 | 1.36e-40 | 144 |
| Msa1110960 | MtrunA17_Chr3g0077221 | 30.690 | 290 | 182 | 7 | 32 | 313 | 45 | 323 | 4.44e-40 | 142 |
| Msa1110960 | MtrunA17_Chr2g0282001 | 31.023 | 303 | 186 | 6 | 29 | 312 | 39 | 337 | 7.60e-39 | 140 |
| Msa1110960 | MtrunA17_Chr4g0039321 | 32.404 | 287 | 177 | 8 | 34 | 313 | 46 | 322 | 9.87e-39 | 139 |
| Msa1110960 | MtrunA17_Chr4g0002661 | 32.384 | 281 | 178 | 6 | 37 | 314 | 52 | 323 | 2.93e-37 | 135 |
| Msa1110960 | MtrunA17_Chr7g0275521 | 30.330 | 333 | 202 | 8 | 5 | 314 | 15 | 340 | 9.79e-36 | 131 |
| Msa1110960 | MtrunA17_Chr2g0333781 | 33.333 | 282 | 173 | 9 | 37 | 314 | 59 | 329 | 2.22e-35 | 130 |
| Msa1110960 | MtrunA17_Chr2g0282011 | 32.343 | 303 | 182 | 7 | 29 | 312 | 40 | 338 | 3.23e-35 | 130 |
| Msa1110960 | MtrunA17_Chr4g0001321 | 30.714 | 280 | 183 | 5 | 37 | 314 | 56 | 326 | 1.52e-33 | 125 |
| Msa1110960 | MtrunA17_Chr2g0291541 | 31.313 | 297 | 173 | 10 | 33 | 314 | 46 | 326 | 2.71e-33 | 125 |
| Msa1110960 | MtrunA17_Chr4g0039311 | 32.340 | 235 | 152 | 6 | 34 | 265 | 48 | 278 | 7.08e-33 | 124 |
| Msa1110960 | MtrunA17_Chr4g0002961 | 32.384 | 281 | 178 | 6 | 37 | 314 | 52 | 323 | 2.65e-30 | 117 |
| Msa1110960 | MtrunA17_Chr6g0450211 | 29.787 | 235 | 125 | 8 | 34 | 241 | 79 | 300 | 2.28e-23 | 98.6 |
| Msa1110960 | MtrunA17_Chr5g0411071 | 27.111 | 225 | 149 | 5 | 37 | 258 | 48 | 260 | 7.39e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110960 | AT2G45400.3 | 47.797 | 295 | 147 | 4 | 26 | 314 | 14 | 307 | 2.90e-93 | 279 |
| Msa1110960 | AT2G45400.1 | 48.621 | 290 | 142 | 4 | 31 | 314 | 76 | 364 | 1.33e-92 | 280 |
| Msa1110960 | AT2G45400.2 | 50.000 | 244 | 116 | 3 | 31 | 268 | 76 | 319 | 4.81e-80 | 246 |
| Msa1110960 | AT5G42800.1 | 43.945 | 289 | 150 | 3 | 32 | 314 | 43 | 325 | 4.89e-77 | 240 |
| Msa1110960 | AT4G35420.1 | 38.194 | 288 | 166 | 7 | 31 | 314 | 42 | 321 | 3.83e-62 | 200 |
| Msa1110960 | AT2G45400.4 | 50.549 | 182 | 85 | 2 | 28 | 204 | 73 | 254 | 2.52e-56 | 183 |
| Msa1110960 | AT1G61720.1 | 38.571 | 280 | 156 | 6 | 47 | 314 | 62 | 337 | 3.57e-56 | 185 |
| Msa1110960 | AT1G68540.1 | 33.333 | 291 | 184 | 6 | 29 | 314 | 36 | 321 | 3.96e-51 | 172 |
| Msa1110960 | AT1G25460.1 | 34.035 | 285 | 179 | 5 | 34 | 314 | 40 | 319 | 1.08e-50 | 171 |
| Msa1110960 | AT2G02400.1 | 35.959 | 292 | 164 | 8 | 33 | 314 | 40 | 318 | 9.09e-50 | 168 |
| Msa1110960 | AT1G09480.2 | 34.304 | 309 | 189 | 8 | 9 | 314 | 25 | 322 | 1.10e-46 | 160 |
| Msa1110960 | AT1G09480.1 | 34.304 | 309 | 189 | 8 | 9 | 314 | 72 | 369 | 2.65e-46 | 160 |
| Msa1110960 | AT1G09510.1 | 36.237 | 287 | 168 | 7 | 31 | 311 | 42 | 319 | 1.29e-45 | 157 |
| Msa1110960 | AT4G27250.1 | 29.560 | 318 | 196 | 8 | 13 | 305 | 23 | 337 | 3.60e-45 | 157 |
| Msa1110960 | AT1G09490.2 | 33.101 | 287 | 183 | 6 | 31 | 314 | 11 | 291 | 2.35e-44 | 153 |
| Msa1110960 | AT1G09490.1 | 33.218 | 289 | 184 | 6 | 29 | 314 | 40 | 322 | 2.69e-44 | 154 |
| Msa1110960 | AT4G27250.2 | 29.677 | 310 | 196 | 8 | 13 | 305 | 23 | 327 | 3.29e-44 | 154 |
| Msa1110960 | AT5G58490.1 | 34.177 | 316 | 186 | 11 | 6 | 314 | 23 | 323 | 5.86e-44 | 153 |
| Msa1110960 | AT1G66800.1 | 33.216 | 283 | 182 | 6 | 32 | 314 | 43 | 318 | 1.22e-41 | 147 |
| Msa1110960 | AT5G19440.1 | 33.103 | 290 | 175 | 7 | 32 | 313 | 45 | 323 | 1.00e-40 | 145 |
| Msa1110960 | AT1G51410.1 | 31.915 | 282 | 181 | 7 | 37 | 314 | 49 | 323 | 1.08e-40 | 144 |
| Msa1110960 | AT1G09500.1 | 31.597 | 288 | 187 | 7 | 29 | 311 | 40 | 322 | 5.34e-38 | 137 |
| Msa1110960 | AT1G09500.2 | 31.469 | 286 | 186 | 7 | 31 | 311 | 8 | 288 | 6.83e-38 | 136 |
| Msa1110960 | AT1G09500.3 | 32.917 | 240 | 153 | 5 | 29 | 264 | 40 | 275 | 1.04e-37 | 135 |
| Msa1110960 | AT1G15950.3 | 33.798 | 287 | 169 | 7 | 35 | 314 | 50 | 322 | 9.04e-37 | 135 |
| Msa1110960 | AT1G15950.1 | 33.798 | 287 | 169 | 7 | 35 | 314 | 50 | 322 | 9.04e-37 | 135 |
| Msa1110960 | AT2G33590.1 | 32.624 | 282 | 165 | 10 | 35 | 306 | 46 | 312 | 1.03e-35 | 131 |
| Msa1110960 | AT1G76470.1 | 31.786 | 280 | 186 | 4 | 37 | 314 | 46 | 322 | 8.26e-34 | 126 |
| Msa1110960 | AT1G15950.2 | 32.593 | 270 | 172 | 4 | 35 | 302 | 50 | 311 | 9.54e-34 | 126 |
| Msa1110960 | AT1G68540.2 | 32.877 | 219 | 138 | 5 | 100 | 314 | 1 | 214 | 1.19e-33 | 123 |
| Msa1110960 | AT1G80820.1 | 31.786 | 280 | 180 | 5 | 37 | 314 | 47 | 317 | 8.93e-33 | 124 |
| Msa1110960 | AT2G33600.1 | 34.532 | 278 | 165 | 9 | 35 | 306 | 46 | 312 | 1.67e-32 | 123 |
| Msa1110960 | AT1G15950.6 | 34.188 | 234 | 144 | 4 | 35 | 266 | 50 | 275 | 3.13e-31 | 118 |
| Msa1110960 | AT1G15950.4 | 34.188 | 234 | 144 | 4 | 35 | 266 | 50 | 275 | 5.20e-31 | 118 |
| Msa1110960 | AT1G15950.5 | 34.188 | 234 | 144 | 4 | 35 | 266 | 50 | 275 | 5.76e-31 | 118 |
| Msa1110960 | AT1G80820.2 | 32.759 | 232 | 146 | 4 | 37 | 266 | 47 | 270 | 4.49e-28 | 110 |
| Msa1110960 | AT1G15950.7 | 33.478 | 230 | 136 | 6 | 92 | 314 | 5 | 224 | 5.53e-25 | 101 |
| Msa1110960 | AT2G23910.4 | 26.136 | 264 | 175 | 9 | 37 | 291 | 16 | 268 | 1.12e-21 | 92.8 |
| Msa1110960 | AT2G23910.1 | 26.136 | 264 | 175 | 9 | 37 | 291 | 50 | 302 | 1.93e-21 | 92.8 |
| Msa1110960 | AT5G14700.1 | 27.953 | 254 | 151 | 7 | 54 | 288 | 115 | 355 | 6.62e-20 | 89.4 |
| Msa1110960 | AT2G23910.2 | 25.322 | 233 | 160 | 7 | 37 | 265 | 50 | 272 | 1.71e-18 | 84.0 |
| Msa1110960 | AT2G23910.3 | 25.322 | 233 | 160 | 7 | 37 | 265 | 50 | 272 | 1.82e-18 | 84.0 |
| Msa1110960 | AT4G30470.1 | 25.769 | 260 | 162 | 9 | 45 | 290 | 58 | 300 | 5.77e-17 | 80.1 |
| Msa1110960 | AT5G14700.2 | 31.915 | 141 | 73 | 4 | 58 | 185 | 119 | 249 | 8.19e-15 | 73.9 |
Find 49 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCATTGAAACTTTC+TGG | 0.125713 | 7_3:-56461796 | None:intergenic |
| GAGAAGGCTGTTCTTGAATT+TGG | 0.137438 | 7_3:+56462105 | Msa1110960:CDS |
| ACCTCTCTGTCTTTGTTATT+TGG | 0.159764 | 7_3:+56462216 | Msa1110960:CDS |
| TATATGAAATTCAGGGTATT+TGG | 0.255630 | 7_3:-56464111 | None:intergenic |
| GAGCAATTATATCTCCCTTT+TGG | 0.266827 | 7_3:-56464044 | None:intergenic |
| AGTGTTGGTATATGAAATTC+AGG | 0.275539 | 7_3:-56464119 | None:intergenic |
| CACTGCAACTCCAATTGATT+TGG | 0.296688 | 7_3:+56461843 | Msa1110960:CDS |
| AGAACAATTGATGGAGCATT+AGG | 0.319772 | 7_3:+56461898 | Msa1110960:CDS |
| AGGGAGCTGAAGGAAATTAA+AGG | 0.350467 | 7_3:+56464241 | Msa1110960:intron |
| TCATTCATTTCCAAATCAAT+TGG | 0.363586 | 7_3:-56461853 | None:intergenic |
| ATGTAATGGATGAGAGTTAT+TGG | 0.372531 | 7_3:+56462013 | Msa1110960:CDS |
| GATTCAGTGTTGCAAGGAAA+AGG | 0.394699 | 7_3:+56464351 | Msa1110960:CDS |
| AGCTTCCTCACAAATCTTCC+AGG | 0.396225 | 7_3:+56461730 | Msa1110960:CDS |
| TCTTCAATATTTGCAATGAA+TGG | 0.401037 | 7_3:-56464068 | None:intergenic |
| ATAAAGTATAGTATTAATAA+AGG | 0.404503 | 7_3:+56464462 | Msa1110960:three_prime_UTR |
| TGGCTTCTCTCGTCTCCATA+TGG | 0.409487 | 7_3:+56463968 | Msa1110960:CDS |
| TTGCTGCATTGAAACTTTCT+GGG | 0.416184 | 7_3:-56461795 | None:intergenic |
| GTAGGGGACAAGAATCCATT+TGG | 0.425747 | 7_3:+56463948 | Msa1110960:intron |
| CAAGTGCTTCAGCAGTGTAT+TGG | 0.428274 | 7_3:+56461974 | Msa1110960:CDS |
| TGGTTGGAAGCTTCTGCTGA+TGG | 0.446646 | 7_3:+56460776 | Msa1110960:CDS |
| ATTGAATATGACCAAGCAAA+TGG | 0.453024 | 7_3:-56462066 | None:intergenic |
| TATCATCAACATGCACCATA+TGG | 0.453095 | 7_3:-56463983 | None:intergenic |
| AAGATTTGAAACCATTTGCT+TGG | 0.453224 | 7_3:+56462055 | Msa1110960:CDS |
| AGTTTCAATGCAGCAATTGA+AGG | 0.458381 | 7_3:+56461802 | Msa1110960:CDS |
| CTTGAGCATCCTAATCCAAA+AGG | 0.458566 | 7_3:+56464029 | Msa1110960:CDS |
| TTCTAAAACAATGGCAGAGA+AGG | 0.467203 | 7_3:+56462089 | Msa1110960:CDS |
| TTCATTTGTCCTAAGCGTCC+TGG | 0.480298 | 7_3:+56462183 | Msa1110960:CDS |
| TAAATTGAGCCAGGACGCTT+AGG | 0.480492 | 7_3:-56462192 | None:intergenic |
| ATTCAGTGTTGCAAGGAAAA+GGG | 0.509113 | 7_3:+56464352 | Msa1110960:CDS |
| TGGAGACGAGAGAAGCCAAA+TGG | 0.520904 | 7_3:-56463963 | None:intergenic |
| AGGACGCTTAGGACAAATGA+AGG | 0.523329 | 7_3:-56462181 | None:intergenic |
| ATATTCAATTTCTAAAACAA+TGG | 0.525829 | 7_3:+56462080 | Msa1110960:CDS |
| AGATAAAGATGATGATGTAA+TGG | 0.533409 | 7_3:+56461999 | Msa1110960:CDS |
| CTTGAATTTGGAGAACAACA+TGG | 0.539504 | 7_3:+56462117 | Msa1110960:CDS |
| ACACAGCCTTGAGGAAATGT+TGG | 0.550570 | 7_3:+56464321 | Msa1110960:CDS |
| AAGGGTCCAAGAACAAAAGT+TGG | 0.557011 | 7_3:-56462162 | None:intergenic |
| TTGAGCATCCTAATCCAAAA+GGG | 0.569459 | 7_3:+56464030 | Msa1110960:CDS |
| AGAGAGGTATAAATTGAGCC+AGG | 0.580168 | 7_3:-56462201 | None:intergenic |
| TTTGTTAGATGGCTGTTGGT+TGG | 0.589782 | 7_3:+56460760 | Msa1110960:CDS |
| GCAGCAATTGAAGGATGCAA+AGG | 0.592622 | 7_3:+56461811 | Msa1110960:CDS |
| ATTAGAACTCACTCTAGTGT+TGG | 0.602184 | 7_3:-56464134 | None:intergenic |
| GTGTTGGTATATGAAATTCA+GGG | 0.639563 | 7_3:-56464118 | None:intergenic |
| CGATACGATTCAGTGTTGCA+AGG | 0.647384 | 7_3:+56464345 | Msa1110960:CDS |
| TATCGTCCAACATTTCCTCA+AGG | 0.653115 | 7_3:-56464327 | None:intergenic |
| ACCAAATAACAAAGACAGAG+AGG | 0.665667 | 7_3:-56462217 | None:intergenic |
| AATCAATTGGAGTTGCAGTG+TGG | 0.684696 | 7_3:-56461840 | None:intergenic |
| GGACGCTTAGGACAAATGAA+GGG | 0.710235 | 7_3:-56462180 | None:intergenic |
| CGAGTTCAAACACAGCCTTG+AGG | 0.724622 | 7_3:+56464312 | Msa1110960:CDS |
| ATGCACCTGGAAGATTTGTG+AGG | 0.732752 | 7_3:-56461735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAATTTCTTAAAAAAAA+TGG | - | chr7_3:56461252-56461271 | None:intergenic | 10.0% |
| !!! | TAATTTCTAAAAAACTATTT+TGG | + | chr7_3:56461307-56461326 | Msa1110960:intron | 10.0% |
| !!! | GTTTTTTTTAATAAAAATTG+GGG | + | chr7_3:56462296-56462315 | Msa1110960:intron | 10.0% |
| !! | TCAATATAAATTGATATATT+TGG | + | chr7_3:56462481-56462500 | Msa1110960:intron | 10.0% |
| !! | ATATAAAAAAAAACATTTGT+TGG | + | chr7_3:56463673-56463692 | Msa1110960:intron | 10.0% |
| !!! | TCTTTGATTTTTTTTTTTTT+TGG | + | chr7_3:56464378-56464397 | Msa1110960:exon | 10.0% |
| !!! | AATGTTACTACTAATTTTTT+TGG | - | chr7_3:56461167-56461186 | None:intergenic | 15.0% |
| !!! | ATATTCAATTTCTAAAACAA+TGG | + | chr7_3:56462080-56462099 | Msa1110960:CDS | 15.0% |
| !!! | TCTAAAATATAAGCAAAAAT+TGG | - | chr7_3:56462543-56462562 | None:intergenic | 15.0% |
| !! | TGTGTTTATAAATTATAAGT+GGG | - | chr7_3:56463394-56463413 | None:intergenic | 15.0% |
| !! | ATGTGTTTATAAATTATAAG+TGG | - | chr7_3:56463395-56463414 | None:intergenic | 15.0% |
| !!! | TGTATAAACTAATTTTCTAA+AGG | - | chr7_3:56463731-56463750 | None:intergenic | 15.0% |
| !!! | ATGACAATACTTTTTTTTAA+CGG | - | chr7_3:56463811-56463830 | None:intergenic | 15.0% |
| !!! | ATACCAATAAATTCATTTTT+AGG | + | chr7_3:56463872-56463891 | Msa1110960:intron | 15.0% |
| !!! | TATTTAGTTATTTTGTTCAT+AGG | + | chr7_3:56464221-56464240 | Msa1110960:intron | 15.0% |
| !!! | ATTTAGTTATTTTGTTCATA+GGG | + | chr7_3:56464222-56464241 | Msa1110960:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGTTACA+AGG | + | chr7_3:56464386-56464405 | Msa1110960:three_prime_UTR | 15.0% |
| !!! | AGGACATTTGAATAATTTTT+GGG | + | chr7_3:56461000-56461019 | Msa1110960:intron | 20.0% |
| !! | GATATTTATTCTAGTAGAAA+AGG | + | chr7_3:56461369-56461388 | Msa1110960:intron | 20.0% |
| !!! | ATTGAAGAATTTTAGCTTTT+GGG | - | chr7_3:56461761-56461780 | None:intergenic | 20.0% |
| !! | ATATAGTCAGAAGAAAAAAA+AGG | - | chr7_3:56462265-56462284 | None:intergenic | 20.0% |
| !! | AGCTATTGTATTTATAAATG+TGG | + | chr7_3:56462326-56462345 | Msa1110960:intron | 20.0% |
| !! | TATCATTAGTGAAAAGATTA+TGG | - | chr7_3:56462901-56462920 | None:intergenic | 20.0% |
| !!! | TATTTTGTAAGTATTGTGTT+GGG | - | chr7_3:56463641-56463660 | None:intergenic | 20.0% |
| !!! | ATATTTTGTAAGTATTGTGT+TGG | - | chr7_3:56463642-56463661 | None:intergenic | 20.0% |
| !! | TGAATTCTACATATTAGATT+GGG | - | chr7_3:56463846-56463865 | None:intergenic | 20.0% |
| !! | ATGCCTAAAAATGAATTTAT+TGG | - | chr7_3:56463878-56463897 | None:intergenic | 20.0% |
| !! | TGCTAATTAAGAATAGAAAA+TGG | + | chr7_3:56463920-56463939 | Msa1110960:intron | 20.0% |
| !! | TAAATACTAGTTACAGTAAA+AGG | - | chr7_3:56464207-56464226 | None:intergenic | 20.0% |
| ! | AATTATTCAAATGTCCTCAT+TGG | - | chr7_3:56460997-56461016 | None:intergenic | 25.0% |
| !! | GAGGACATTTGAATAATTTT+TGG | + | chr7_3:56460999-56461018 | Msa1110960:intron | 25.0% |
| ! | TCTTACAACATAACAAATCA+AGG | + | chr7_3:56461398-56461417 | Msa1110960:intron | 25.0% |
| ! | AACTCCAACGAAAAAAATTA+TGG | + | chr7_3:56461481-56461500 | Msa1110960:intron | 25.0% |
| !!! | TCTTCCATAATTTTTTTCGT+TGG | - | chr7_3:56461488-56461507 | None:intergenic | 25.0% |
| !! | AACACAATTTTATTGCTTGT+TGG | - | chr7_3:56461682-56461701 | None:intergenic | 25.0% |
| !!! | CATTGAAGAATTTTAGCTTT+TGG | - | chr7_3:56461762-56461781 | None:intergenic | 25.0% |
| ! | TCATTCATTTCCAAATCAAT+TGG | - | chr7_3:56461856-56461875 | None:intergenic | 25.0% |
| !! | AGATAAAGATGATGATGTAA+TGG | + | chr7_3:56461999-56462018 | Msa1110960:CDS | 25.0% |
| !! | ATAATACCAACTTTTGTTCT+TGG | + | chr7_3:56462156-56462175 | Msa1110960:CDS | 25.0% |
| ! | TTTAATAAAAATTGGGGTAG+AGG | + | chr7_3:56462302-56462321 | Msa1110960:intron | 25.0% |
| !!! | AACGAATGATCATTTTTCAA+TGG | + | chr7_3:56462349-56462368 | Msa1110960:intron | 25.0% |
| !!! | ATTTTTCAATGGACTCAAAT+GGG | + | chr7_3:56462360-56462379 | Msa1110960:intron | 25.0% |
| ! | TGACTTTATAACCTCAAAAA+CGG | - | chr7_3:56462395-56462414 | None:intergenic | 25.0% |
| !!! | CTCATTTTTGCTTACATTTT+GGG | - | chr7_3:56462461-56462480 | None:intergenic | 25.0% |
| !!! | ACTCATTTTTGCTTACATTT+TGG | - | chr7_3:56462462-56462481 | None:intergenic | 25.0% |
| !! | AAAAACCATCAAATTAGCTT+TGG | + | chr7_3:56462603-56462622 | Msa1110960:intron | 25.0% |
| ! | AAAGAGAGAGAAGATAAAAT+CGG | + | chr7_3:56462631-56462650 | Msa1110960:intron | 25.0% |
| !!! | AATTTAGCTTGTTGTTCTAA+CGG | + | chr7_3:56463017-56463036 | Msa1110960:intron | 25.0% |
| ! | AGATAAGTCGTAAAATATAG+TGG | - | chr7_3:56463085-56463104 | None:intergenic | 25.0% |
| ! | TTATCTTAGAAATCATGGTT+AGG | + | chr7_3:56463099-56463118 | Msa1110960:intron | 25.0% |
| ! | AACAATATGTTTATAAGTGG+AGG | - | chr7_3:56463157-56463176 | None:intergenic | 25.0% |
| ! | CCTAACAATATGTTTATAAG+TGG | - | chr7_3:56463160-56463179 | None:intergenic | 25.0% |
| ! | CCACTTATAAACATATTGTT+AGG | + | chr7_3:56463157-56463176 | Msa1110960:intron | 25.0% |
| !!! | AGTTGTTAAAAGTGTCAAAT+CGG | - | chr7_3:56463436-56463455 | None:intergenic | 25.0% |
| ! | AGGAAACTAAGATTCATTTA+AGG | - | chr7_3:56463711-56463730 | None:intergenic | 25.0% |
| ! | GTGAATTCTACATATTAGAT+TGG | - | chr7_3:56463847-56463866 | None:intergenic | 25.0% |
| ! | CTAATATGTAGAATTCACAA+TGG | + | chr7_3:56463849-56463868 | Msa1110960:intron | 25.0% |
| !! | CATTTTTACAATGAAACTAG+AGG | - | chr7_3:56463902-56463921 | None:intergenic | 25.0% |
| ! | AATAGAAAATGGATGTTGTA+GGG | + | chr7_3:56463931-56463950 | Msa1110960:intron | 25.0% |
| ! | TCTTCAATATTTGCAATGAA+TGG | - | chr7_3:56464071-56464090 | None:intergenic | 25.0% |
| !! | TATATGAAATTCAGGGTATT+TGG | - | chr7_3:56464114-56464133 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTGAGGTTAAATG+TGG | - | chr7_3:56464277-56464296 | None:intergenic | 25.0% |
| ! | TTTAACCTCAAAAAAACTCA+TGG | + | chr7_3:56464279-56464298 | Msa1110960:CDS | 25.0% |
| ! | ATGAGTGAACTTTTGTTAGA+TGG | + | chr7_3:56460749-56460768 | Msa1110960:CDS | 30.0% |
| GTTCACACTTCATAATTTAC+TGG | - | chr7_3:56461032-56461051 | None:intergenic | 30.0% | |
| CTAGAATAAATATCTGTCGA+TGG | - | chr7_3:56461363-56461382 | None:intergenic | 30.0% | |
| GTGACAAAAAGAACAATTGA+TGG | + | chr7_3:56461889-56461908 | Msa1110960:CDS | 30.0% | |
| !! | ATGTAATGGATGAGAGTTAT+TGG | + | chr7_3:56462013-56462032 | Msa1110960:CDS | 30.0% |
| ! | AAGATTTGAAACCATTTGCT+TGG | + | chr7_3:56462055-56462074 | Msa1110960:CDS | 30.0% |
| ATTGAATATGACCAAGCAAA+TGG | - | chr7_3:56462069-56462088 | None:intergenic | 30.0% | |
| !! | CATTTTTCAATGGACTCAAA+TGG | + | chr7_3:56462359-56462378 | Msa1110960:intron | 30.0% |
| !! | TTTTTGCTTACATTTTGGGA+CGG | - | chr7_3:56462457-56462476 | None:intergenic | 30.0% |
| CATTTCCAAAGCTAATTTGA+TGG | - | chr7_3:56462611-56462630 | None:intergenic | 30.0% | |
| TGTTAGTGTATCTAATTGTG+TGG | + | chr7_3:56462661-56462680 | Msa1110960:intron | 30.0% | |
| TGTATCTAATTGTGTGGATT+AGG | + | chr7_3:56462667-56462686 | Msa1110960:intron | 30.0% | |
| ! | GTATCTAATTGTGTGGATTA+GGG | + | chr7_3:56462668-56462687 | Msa1110960:intron | 30.0% |
| TGTTGAGTATGATGACTTAT+AGG | + | chr7_3:56462721-56462740 | Msa1110960:intron | 30.0% | |
| ! | AATGTTTGGCTCAAGTTTAA+GGG | - | chr7_3:56462793-56462812 | None:intergenic | 30.0% |
| ! | AAATGTTTGGCTCAAGTTTA+AGG | - | chr7_3:56462794-56462813 | None:intergenic | 30.0% |
| CAACTTGTATTTAAATACCG+CGG | - | chr7_3:56462867-56462886 | None:intergenic | 30.0% | |
| !! | AGATGTTTGATAGTGAAGTT+GGG | - | chr7_3:56462958-56462977 | None:intergenic | 30.0% |
| !! | AAGATGTTTGATAGTGAAGT+TGG | - | chr7_3:56462959-56462978 | None:intergenic | 30.0% |
| ACGACTTATCTTAGAAATCA+TGG | + | chr7_3:56463094-56463113 | Msa1110960:intron | 30.0% | |
| !! | TTAAAAGTGTCAAATCGGAT+AGG | - | chr7_3:56463431-56463450 | None:intergenic | 30.0% |
| TTAGTTTATACAGTTGTGTG+TGG | + | chr7_3:56463739-56463758 | Msa1110960:intron | 30.0% | |
| GAATAGAAAATGGATGTTGT+AGG | + | chr7_3:56463930-56463949 | Msa1110960:intron | 30.0% | |
| ATAGAAAATGGATGTTGTAG+GGG | + | chr7_3:56463932-56463951 | Msa1110960:intron | 30.0% | |
| ! | TTATATCTCCCTTTTGGATT+AGG | - | chr7_3:56464041-56464060 | None:intergenic | 30.0% |
| ! | GTGTTGGTATATGAAATTCA+GGG | - | chr7_3:56464121-56464140 | None:intergenic | 30.0% |
| !! | AGTGTTGGTATATGAAATTC+AGG | - | chr7_3:56464122-56464141 | None:intergenic | 30.0% |
| !!! | TTTTTGGTTACAAGGCTAAA+AGG | + | chr7_3:56464394-56464413 | Msa1110960:three_prime_UTR | 30.0% |
| !! | TTTTGGTTACAAGGCTAAAA+GGG | + | chr7_3:56464395-56464414 | Msa1110960:three_prime_UTR | 30.0% |
| ! | AACTTTTGTTAGATGGCTGT+TGG | + | chr7_3:56460756-56460775 | Msa1110960:CDS | 35.0% |
| TGTGGAGCATAAAATCTGAA+GGG | - | chr7_3:56460887-56460906 | None:intergenic | 35.0% | |
| TTGTGGAGCATAAAATCTGA+AGG | - | chr7_3:56460888-56460907 | None:intergenic | 35.0% | |
| ! | GTTTTTCATGTGCACATGTT+TGG | + | chr7_3:56460926-56460945 | Msa1110960:intron | 35.0% |
| TGTGTCAGAGATTGAACATA+GGG | - | chr7_3:56461074-56461093 | None:intergenic | 35.0% | |
| ! | TGCATGAAGTGTTAATTCAG+CGG | + | chr7_3:56461591-56461610 | Msa1110960:intron | 35.0% |
| CTTGTTGGTCAAGTATACAT+TGG | - | chr7_3:56461667-56461686 | None:intergenic | 35.0% | |
| TTGCTGCATTGAAACTTTCT+GGG | - | chr7_3:56461798-56461817 | None:intergenic | 35.0% | |
| ATTGCTGCATTGAAACTTTC+TGG | - | chr7_3:56461799-56461818 | None:intergenic | 35.0% | |
| AGTTTCAATGCAGCAATTGA+AGG | + | chr7_3:56461802-56461821 | Msa1110960:CDS | 35.0% | |
| ! | AGAACAATTGATGGAGCATT+AGG | + | chr7_3:56461898-56461917 | Msa1110960:CDS | 35.0% |
| !! | TTCTAAAACAATGGCAGAGA+AGG | + | chr7_3:56462089-56462108 | Msa1110960:CDS | 35.0% |
| CTTGAATTTGGAGAACAACA+TGG | + | chr7_3:56462117-56462136 | Msa1110960:CDS | 35.0% | |
| !! | ACCTCTCTGTCTTTGTTATT+TGG | + | chr7_3:56462216-56462235 | Msa1110960:CDS | 35.0% |
| ACCAAATAACAAAGACAGAG+AGG | - | chr7_3:56462220-56462239 | None:intergenic | 35.0% | |
| TGCATTAGATGTCAACTTAG+TGG | - | chr7_3:56462426-56462445 | None:intergenic | 35.0% | |
| !! | ACTTATAGGTACTGAGAAGT+GGG | + | chr7_3:56462735-56462754 | Msa1110960:intron | 35.0% |
| !! | TTGAGCCAAACATTTGTTGT+GGG | + | chr7_3:56462799-56462818 | Msa1110960:intron | 35.0% |
| CAGTTCAATGATGCTATAGT+TGG | + | chr7_3:56462840-56462859 | Msa1110960:intron | 35.0% | |
| CGCGGTATTTAAATACAAGT+TGG | + | chr7_3:56462865-56462884 | Msa1110960:intron | 35.0% | |
| AGAGTCTCTTCAAAATCCAT+CGG | - | chr7_3:56463300-56463319 | None:intergenic | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | + | chr7_3:56463319-56463338 | Msa1110960:intron | 35.0% | |
| !! | ATCACATAAGTCGGTTTTGT+GGG | - | chr7_3:56463361-56463380 | None:intergenic | 35.0% |
| GCAATACTCATCACATAAGT+CGG | - | chr7_3:56463370-56463389 | None:intergenic | 35.0% | |
| !! | ACCAGTTGCAATTTTGATGA+GGG | - | chr7_3:56463464-56463483 | None:intergenic | 35.0% |
| !! | AACCAGTTGCAATTTTGATG+AGG | - | chr7_3:56463465-56463484 | None:intergenic | 35.0% |
| CAAAATTGCAACTGGTTGAT+TGG | + | chr7_3:56463468-56463487 | Msa1110960:intron | 35.0% | |
| ! | AACATTTGTTGGAAGATGTC+AGG | + | chr7_3:56463684-56463703 | Msa1110960:intron | 35.0% |
| TGTGTGTGGAAGAATACATT+TGG | + | chr7_3:56463753-56463772 | Msa1110960:intron | 35.0% | |
| TATCATCAACATGCACCATA+TGG | - | chr7_3:56463986-56464005 | None:intergenic | 35.0% | |
| TTGAGCATCCTAATCCAAAA+GGG | + | chr7_3:56464030-56464049 | Msa1110960:CDS | 35.0% | |
| ! | GAGCAATTATATCTCCCTTT+TGG | - | chr7_3:56464047-56464066 | None:intergenic | 35.0% |
| ATTAGAACTCACTCTAGTGT+TGG | - | chr7_3:56464137-56464156 | None:intergenic | 35.0% | |
| !!! | AGCATCCATGAGTTTTTTTG+AGG | - | chr7_3:56464287-56464306 | None:intergenic | 35.0% |
| TCAAAAAAACTCATGGATGC+TGG | + | chr7_3:56464286-56464305 | Msa1110960:CDS | 35.0% | |
| ATTCAGTGTTGCAAGGAAAA+GGG | + | chr7_3:56464352-56464371 | Msa1110960:CDS | 35.0% | |
| TTTGTTAGATGGCTGTTGGT+TGG | + | chr7_3:56460760-56460779 | Msa1110960:CDS | 40.0% | |
| GAGAATGAAGGGTCAAAGAT+TGG | - | chr7_3:56460839-56460858 | None:intergenic | 40.0% | |
| GTGCACATGAAAAACTCCAT+CGG | - | chr7_3:56460921-56460940 | None:intergenic | 40.0% | |
| TCATGTGCACATGTTTGGAT+CGG | + | chr7_3:56460931-56460950 | Msa1110960:intron | 40.0% | |
| GTGTGTCAGAGATTGAACAT+AGG | - | chr7_3:56461075-56461094 | None:intergenic | 40.0% | |
| GTTGGTCAAGTATACATTGG+AGG | - | chr7_3:56461664-56461683 | None:intergenic | 40.0% | |
| AATCAATTGGAGTTGCAGTG+TGG | - | chr7_3:56461843-56461862 | None:intergenic | 40.0% | |
| CACTGCAACTCCAATTGATT+TGG | + | chr7_3:56461843-56461862 | Msa1110960:CDS | 40.0% | |
| GAGAAGGCTGTTCTTGAATT+TGG | + | chr7_3:56462105-56462124 | Msa1110960:CDS | 40.0% | |
| AAGGGTCCAAGAACAAAAGT+TGG | - | chr7_3:56462165-56462184 | None:intergenic | 40.0% | |
| ! | AGAGAGGTATAAATTGAGCC+AGG | - | chr7_3:56462204-56462223 | None:intergenic | 40.0% |
| !! | GGATTTGAACTCCGTTTTTG+AGG | + | chr7_3:56462381-56462400 | Msa1110960:intron | 40.0% |
| TAGGGATCAGTTGGTCAATT+AGG | + | chr7_3:56462686-56462705 | Msa1110960:intron | 40.0% | |
| !! | GACTTATAGGTACTGAGAAG+TGG | + | chr7_3:56462734-56462753 | Msa1110960:intron | 40.0% |
| ! | CTTGAGCCAAACATTTGTTG+TGG | + | chr7_3:56462798-56462817 | Msa1110960:intron | 40.0% |
| !! | TGAGCCAAACATTTGTTGTG+GGG | + | chr7_3:56462800-56462819 | Msa1110960:intron | 40.0% |
| TTAAGAGTCTCACATCGGAT+AGG | - | chr7_3:56463189-56463208 | None:intergenic | 40.0% | |
| GTGTGTTAAGAGTCTCACAT+CGG | - | chr7_3:56463194-56463213 | None:intergenic | 40.0% | |
| ! | GCTTTGTTCGTGGACATAAA+TGG | + | chr7_3:56463237-56463256 | Msa1110960:intron | 40.0% |
| TTGTTCGTGGACATAAATGG+TGG | + | chr7_3:56463240-56463259 | Msa1110960:intron | 40.0% | |
| TGTTCGTGGACATAAATGGT+GGG | + | chr7_3:56463241-56463260 | Msa1110960:intron | 40.0% | |
| GAGTCTCTTCAAAATCCATC+GGG | - | chr7_3:56463299-56463318 | None:intergenic | 40.0% | |
| ! | CCTAACCACGATTTCTAAGA+TGG | - | chr7_3:56463327-56463346 | None:intergenic | 40.0% |
| CCATCTTAGAAATCGTGGTT+AGG | + | chr7_3:56463324-56463343 | Msa1110960:intron | 40.0% | |
| !! | CATCACATAAGTCGGTTTTG+TGG | - | chr7_3:56463362-56463381 | None:intergenic | 40.0% |
| ACCCTCATCAAAATTGCAAC+TGG | + | chr7_3:56463460-56463479 | Msa1110960:intron | 40.0% | |
| CTTGAGCATCCTAATCCAAA+AGG | + | chr7_3:56464029-56464048 | Msa1110960:CDS | 40.0% | |
| ! | TTTTGTTCATAGGGAGCTGA+AGG | + | chr7_3:56464231-56464250 | Msa1110960:intron | 40.0% |
| AGGGAGCTGAAGGAAATTAA+AGG | + | chr7_3:56464241-56464260 | Msa1110960:intron | 40.0% | |
| TATCGTCCAACATTTCCTCA+AGG | - | chr7_3:56464330-56464349 | None:intergenic | 40.0% | |
| GATTCAGTGTTGCAAGGAAA+AGG | + | chr7_3:56464351-56464370 | Msa1110960:CDS | 40.0% | |
| AGGCAGGCTAAGAGAATGAA+GGG | - | chr7_3:56460850-56460869 | None:intergenic | 45.0% | |
| AAGGCAGGCTAAGAGAATGA+AGG | - | chr7_3:56460851-56460870 | None:intergenic | 45.0% | |
| TTCATTCTCTTAGCCTGCCT+TGG | + | chr7_3:56460850-56460869 | Msa1110960:intron | 45.0% | |
| !! | GAAGGGTTTGTTGTTCTCCA+AGG | - | chr7_3:56460870-56460889 | None:intergenic | 45.0% |
| ! | CCATCGGTACTTAAGTGTTG+TGG | - | chr7_3:56460905-56460924 | None:intergenic | 45.0% |
| !! | CCACAACACTTAAGTACCGA+TGG | + | chr7_3:56460902-56460921 | Msa1110960:intron | 45.0% |
| TCGATGGTTAACTGCCAATG+AGG | + | chr7_3:56460980-56460999 | Msa1110960:intron | 45.0% | |
| CTATGGGATGCATGTGTGAT+GGG | - | chr7_3:56461097-56461116 | None:intergenic | 45.0% | |
| ACTATGGGATGCATGTGTGA+TGG | - | chr7_3:56461098-56461117 | None:intergenic | 45.0% | |
| GTTTGACCACCACTCACTAT+GGG | - | chr7_3:56461113-56461132 | None:intergenic | 45.0% | |
| TGTTTGACCACCACTCACTA+TGG | - | chr7_3:56461114-56461133 | None:intergenic | 45.0% | |
| GGTCAAGTATACATTGGAGG+AGG | - | chr7_3:56461661-56461680 | None:intergenic | 45.0% | |
| AGCTTCCTCACAAATCTTCC+AGG | + | chr7_3:56461730-56461749 | Msa1110960:CDS | 45.0% | |
| ATGCACCTGGAAGATTTGTG+AGG | - | chr7_3:56461738-56461757 | None:intergenic | 45.0% | |
| !!! | TTTAGCTTTTGGGATGCACC+TGG | - | chr7_3:56461751-56461770 | None:intergenic | 45.0% |
| GCAGCAATTGAAGGATGCAA+AGG | + | chr7_3:56461811-56461830 | Msa1110960:CDS | 45.0% | |
| CAAGTGCTTCAGCAGTGTAT+TGG | + | chr7_3:56461974-56461993 | Msa1110960:CDS | 45.0% | |
| GGACGCTTAGGACAAATGAA+GGG | - | chr7_3:56462183-56462202 | None:intergenic | 45.0% | |
| AGGACGCTTAGGACAAATGA+AGG | - | chr7_3:56462184-56462203 | None:intergenic | 45.0% | |
| TTCATTTGTCCTAAGCGTCC+TGG | + | chr7_3:56462183-56462202 | Msa1110960:CDS | 45.0% | |
| TAAATTGAGCCAGGACGCTT+AGG | - | chr7_3:56462195-56462214 | None:intergenic | 45.0% | |
| !! | TGTGTGGATTAGGGATCAGT+TGG | + | chr7_3:56462677-56462696 | Msa1110960:intron | 45.0% |
| !! | ATAGGTACTGAGAAGTGGGA+AGG | + | chr7_3:56462739-56462758 | Msa1110960:intron | 45.0% |
| ! | TTTGGCTCAAGTTTAAGGGC+AGG | - | chr7_3:56462789-56462808 | None:intergenic | 45.0% |
| TCGTCCCCACAACAAATGTT+TGG | - | chr7_3:56462807-56462826 | None:intergenic | 45.0% | |
| AGCATCATTGAACTGTACCG+CGG | - | chr7_3:56462835-56462854 | None:intergenic | 45.0% | |
| ATGATGCTATAGTTGGACCG+CGG | + | chr7_3:56462847-56462866 | Msa1110960:intron | 45.0% | |
| ATGGTTAGGCCTAACACAAC+CGG | + | chr7_3:56463113-56463132 | Msa1110960:intron | 45.0% | |
| CGAACAAAGCCCAATAGTGT+TGG | - | chr7_3:56463227-56463246 | None:intergenic | 45.0% | |
| !! | ACACTATTGGGCTTTGTTCG+TGG | + | chr7_3:56463227-56463246 | Msa1110960:intron | 45.0% |
| GTGTCAAATCGGATAGGAGA+TGG | - | chr7_3:56463425-56463444 | None:intergenic | 45.0% | |
| GTAGGGGACAAGAATCCATT+TGG | + | chr7_3:56463948-56463967 | Msa1110960:intron | 45.0% | |
| ACACAGCCTTGAGGAAATGT+TGG | + | chr7_3:56464321-56464340 | Msa1110960:CDS | 45.0% | |
| CGATACGATTCAGTGTTGCA+AGG | + | chr7_3:56464345-56464364 | Msa1110960:CDS | 45.0% | |
| !!! | TTGTTTTTTTTAATAAAAAT+TGG | + | chr7_3:56462294-56462313 | Msa1110960:intron | 5.0% |
| !!! | TGTTTTTTTTAATAAAAATT+GGG | + | chr7_3:56462295-56462314 | Msa1110960:intron | 5.0% |
| TGGTTGGAAGCTTCTGCTGA+TGG | + | chr7_3:56460776-56460795 | Msa1110960:CDS | 50.0% | |
| !! | GGTTTGTTGTTCTCCAAGGC+AGG | - | chr7_3:56460866-56460885 | None:intergenic | 50.0% |
| CCATCGATGACTCTTTGCGA+CGG | - | chr7_3:56460967-56460986 | None:intergenic | 50.0% | |
| CACATGCATCCCATAGTGAG+TGG | + | chr7_3:56461101-56461120 | Msa1110960:intron | 50.0% | |
| ATGCATCCCATAGTGAGTGG+TGG | + | chr7_3:56461104-56461123 | Msa1110960:intron | 50.0% | |
| CATCATTGAACTGTACCGCG+GGG | - | chr7_3:56462833-56462852 | None:intergenic | 50.0% | |
| GCATCATTGAACTGTACCGC+GGG | - | chr7_3:56462834-56462853 | None:intergenic | 50.0% | |
| GTCTCACATCGGATAGGAGA+TGG | - | chr7_3:56463183-56463202 | None:intergenic | 50.0% | |
| !! | CAATAGTGTTGGTCGTGAGG+GGG | - | chr7_3:56463216-56463235 | None:intergenic | 50.0% |
| !! | CCAATAGTGTTGGTCGTGAG+GGG | - | chr7_3:56463217-56463236 | None:intergenic | 50.0% |
| !! | CCCAATAGTGTTGGTCGTGA+GGG | - | chr7_3:56463218-56463237 | None:intergenic | 50.0% |
| CCCTCACGACCAACACTATT+GGG | + | chr7_3:56463215-56463234 | Msa1110960:intron | 50.0% | |
| ! | TCGTGGACATAAATGGTGGG+TGG | + | chr7_3:56463244-56463263 | Msa1110960:intron | 50.0% |
| !! | AATGGTGGGTGGTCTGATAG+CGG | + | chr7_3:56463255-56463274 | Msa1110960:intron | 50.0% |
| !! | GTCTGATAGCGGAAACCTGA+TGG | + | chr7_3:56463266-56463285 | Msa1110960:intron | 50.0% |
| TGGAGACGAGAGAAGCCAAA+TGG | - | chr7_3:56463966-56463985 | None:intergenic | 50.0% | |
| TGGCTTCTCTCGTCTCCATA+TGG | + | chr7_3:56463968-56463987 | Msa1110960:CDS | 50.0% | |
| CGAGTTCAAACACAGCCTTG+AGG | + | chr7_3:56464312-56464331 | Msa1110960:CDS | 50.0% | |
| CCGTCGCAAAGAGTCATCGA+TGG | + | chr7_3:56460964-56460983 | Msa1110960:intron | 55.0% | |
| AAGGGCAGGTCTCACTCTCT+TGG | - | chr7_3:56462775-56462794 | None:intergenic | 55.0% | |
| CCTCACAAGCCGGTTGTGTT+AGG | - | chr7_3:56463125-56463144 | None:intergenic | 55.0% | |
| !! | CCTAACACAACCGGCTTGTG+AGG | + | chr7_3:56463122-56463141 | Msa1110960:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr7_3:56463135-56463154 | None:intergenic | 55.0% | |
| CCCCTCACGACCAACACTAT+TGG | + | chr7_3:56463214-56463233 | Msa1110960:intron | 55.0% | |
| !! | GCCCAATAGTGTTGGTCGTG+AGG | - | chr7_3:56463219-56463238 | None:intergenic | 55.0% |
| !! | GATAGCGGAAACCTGATGGC+AGG | + | chr7_3:56463270-56463289 | Msa1110960:intron | 55.0% |
| !! | CACAACCGGCTTGTGAGGTG+AGG | + | chr7_3:56463127-56463146 | Msa1110960:intron | 60.0% |
| AGCGGAAACCTGATGGCAGG+TGG | + | chr7_3:56463273-56463292 | Msa1110960:intron | 60.0% | |
| TTGTGGGGACGACGTCCCCG+CGG | + | chr7_3:56462815-56462834 | Msa1110960:intron | 70.0% | |
| CCATCGGGCCACCTGCCATC+AGG | - | chr7_3:56463284-56463303 | None:intergenic | 70.0% | |
| CCTGATGGCAGGTGGCCCGA+TGG | + | chr7_3:56463281-56463300 | Msa1110960:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 56460734 | 56464484 | 56460734 | ID=Msa1110960;Name=Msa1110960 |
| chr7_3 | mRNA | 56460734 | 56464484 | 56460734 | ID=Msa1110960-mRNA-1;Parent=Msa1110960;Name=Msa1110960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.25|0.75|1|1|4|100|314 |
| chr7_3 | exon | 56460734 | 56460818 | 56460734 | ID=Msa1110960-mRNA-1:exon:11910;Parent=Msa1110960-mRNA-1 |
| chr7_3 | exon | 56461713 | 56462237 | 56461713 | ID=Msa1110960-mRNA-1:exon:11911;Parent=Msa1110960-mRNA-1 |
| chr7_3 | exon | 56463952 | 56464144 | 56463952 | ID=Msa1110960-mRNA-1:exon:11912;Parent=Msa1110960-mRNA-1 |
| chr7_3 | exon | 56464243 | 56464484 | 56464243 | ID=Msa1110960-mRNA-1:exon:11913;Parent=Msa1110960-mRNA-1 |
| chr7_3 | CDS | 56460734 | 56460818 | 56460734 | ID=Msa1110960-mRNA-1:cds;Parent=Msa1110960-mRNA-1 |
| chr7_3 | CDS | 56461713 | 56462237 | 56461713 | ID=Msa1110960-mRNA-1:cds;Parent=Msa1110960-mRNA-1 |
| chr7_3 | CDS | 56463952 | 56464144 | 56463952 | ID=Msa1110960-mRNA-1:cds;Parent=Msa1110960-mRNA-1 |
| chr7_3 | CDS | 56464243 | 56464384 | 56464243 | ID=Msa1110960-mRNA-1:cds;Parent=Msa1110960-mRNA-1 |
| chr7_3 | three_prime_UTR | 56464385 | 56464484 | 56464385 | ID=Msa1110960-mRNA-1:three_prime_utr;Parent=Msa1110960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
