Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027240 | XP_003623719.1 | 96.140 | 285 | 11 | 0 | 1 | 285 | 42 | 326 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027240 | sp|Q40316|VESTR_MEDSA | 67.719 | 285 | 92 | 0 | 1 | 285 | 42 | 326 | 5.58e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027240 | A2Q3Y3 | 96.140 | 285 | 11 | 0 | 1 | 285 | 42 | 326 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021460 | Msa1027240 | 0.829948 | 3.867542e-55 | -8.615850e-47 |
| Msa0022640 | Msa1027240 | 0.803093 | 4.108902e-49 | -8.615850e-47 |
| Msa0033340 | Msa1027240 | 0.830922 | 2.235343e-55 | -8.615850e-47 |
| Msa0055690 | Msa1027240 | 0.816377 | 5.707080e-52 | -8.615850e-47 |
| Msa0055730 | Msa1027240 | 0.800514 | 1.390829e-48 | -8.615850e-47 |
| Msa0107390 | Msa1027240 | 0.809388 | 1.939237e-50 | -8.615850e-47 |
| Msa0109970 | Msa1027240 | 0.802332 | 5.900333e-49 | -8.615850e-47 |
| Msa0629850 | Msa1027240 | 0.822309 | 2.538274e-53 | -8.615850e-47 |
| Msa0629940 | Msa1027240 | 0.817229 | 3.674758e-52 | -8.615850e-47 |
| Msa0641900 | Msa1027240 | 0.824756 | 6.792052e-54 | -8.615850e-47 |
| Msa0702870 | Msa1027240 | 0.809218 | 2.109475e-50 | -8.615850e-47 |
| Msa0754180 | Msa1027240 | 0.834585 | 2.752368e-56 | -8.615850e-47 |
| Msa0784580 | Msa1027240 | 0.825505 | 4.518976e-54 | -8.615850e-47 |
| Msa0815320 | Msa1027240 | 0.835596 | 1.530344e-56 | -8.615850e-47 |
| Msa0818010 | Msa1027240 | 0.868009 | 8.973249e-66 | -8.615850e-47 |
| Msa0818030 | Msa1027240 | 0.847065 | 1.463973e-59 | -8.615850e-47 |
| Msa0142230 | Msa1027240 | 0.820469 | 6.748945e-53 | -8.615850e-47 |
| Msa0156170 | Msa1027240 | 0.807666 | 4.521064e-50 | -8.615850e-47 |
| Msa0161680 | Msa1027240 | 0.805353 | 1.390787e-49 | -8.615850e-47 |
| Msa0193010 | Msa1027240 | 0.817125 | 3.877964e-52 | -8.615850e-47 |
| Msa0211680 | Msa1027240 | 0.836517 | 8.932123e-57 | -8.615850e-47 |
| Msa0235190 | Msa1027240 | 0.846225 | 2.482449e-59 | -8.615850e-47 |
| Msa0365810 | Msa1027240 | 0.817263 | 3.610196e-52 | -8.615850e-47 |
| Msa0389280 | Msa1027240 | 0.802502 | 5.442237e-49 | -8.615850e-47 |
| Msa0414590 | Msa1027240 | 0.824621 | 7.309173e-54 | -8.615850e-47 |
| Msa0452410 | Msa1027240 | 0.806842 | 6.757744e-50 | -8.615850e-47 |
| Msa0458700 | Msa1027240 | 0.874873 | 4.805857e-68 | -8.615850e-47 |
| Msa1002300 | Msa1027240 | 0.819947 | 8.884940e-53 | -8.615850e-47 |
| Msa1006250 | Msa1027240 | 0.845552 | 3.783066e-59 | -8.615850e-47 |
| Msa1006630 | Msa1027240 | 0.801338 | 9.438729e-49 | -8.615850e-47 |
| Msa1020720 | Msa1027240 | 0.830845 | 2.334000e-55 | -8.615850e-47 |
| Msa1021740 | Msa1027240 | 0.808380 | 3.187323e-50 | -8.615850e-47 |
| Msa1027240 | Msa1027290 | 0.871024 | 9.360667e-67 | -8.615850e-47 |
| Msa1027240 | Msa1048610 | 0.803449 | 3.466976e-49 | -8.615850e-47 |
| Msa1027240 | Msa1050480 | 0.814215 | 1.726134e-51 | -8.615850e-47 |
| Msa1027240 | Msa1077950 | 0.856021 | 4.262235e-62 | -8.615850e-47 |
| Msa1027240 | Msa1110960 | 0.827529 | 1.488062e-54 | -8.615850e-47 |
| Msa1027240 | Msa1139410 | 0.809997 | 1.434682e-50 | -8.615850e-47 |
| Msa1027240 | Msa1198090 | 0.803637 | 3.169783e-49 | -8.615850e-47 |
| Msa1027240 | Msa1287560 | 0.811193 | 7.911166e-51 | -8.615850e-47 |
| Msa1027240 | Msa1288000 | 0.817194 | 3.741978e-52 | -8.615850e-47 |
| Msa1027240 | Msa1308580 | 0.809328 | 1.997968e-50 | -8.615850e-47 |
| Msa1027240 | Msa1308620 | 0.806035 | 1.000290e-49 | -8.615850e-47 |
| Msa1027240 | Msa1359820 | 0.823917 | 1.070124e-53 | -8.615850e-47 |
| Msa1027240 | Msa1384290 | 0.802086 | 6.627198e-49 | -8.615850e-47 |
| Msa1027240 | Msa1419010 | 0.800786 | 1.224028e-48 | -8.615850e-47 |
| Msa1027240 | Msa1423990 | 0.851444 | 8.842259e-61 | -8.615850e-47 |
| Msa1027240 | Msa1444370 | 0.881995 | 1.509737e-70 | -8.615850e-47 |
| Msa0273560 | Msa1027240 | 0.809832 | 1.556810e-50 | -8.615850e-47 |
| Msa0273570 | Msa1027240 | 0.876226 | 1.652893e-68 | -8.615850e-47 |
| Msa0273580 | Msa1027240 | 0.833643 | 4.740426e-56 | -8.615850e-47 |
| Msa0284810 | Msa1027240 | 0.803059 | 4.175354e-49 | -8.615850e-47 |
| Msa0313780 | Msa1027240 | 0.828151 | 1.054201e-54 | -8.615850e-47 |
| Msa0313920 | Msa1027240 | 0.849290 | 3.555752e-60 | -8.615850e-47 |
| Msa0352000 | Msa1027240 | 0.813114 | 3.014840e-51 | -8.615850e-47 |
| Msa0352010 | Msa1027240 | 0.811789 | 5.871291e-51 | -8.615850e-47 |
| Msa0363980 | Msa1027240 | 0.838071 | 3.574866e-57 | -8.615850e-47 |
| Msa0506000 | Msa1027240 | 0.825954 | 3.536907e-54 | -8.615850e-47 |
| Msa0512420 | Msa1027240 | 0.814261 | 1.685882e-51 | -8.615850e-47 |
| Msa0533290 | Msa1027240 | 0.821783 | 3.360344e-53 | -8.615850e-47 |
| Msa0533430 | Msa1027240 | 0.855712 | 5.248342e-62 | -8.615850e-47 |
| Msa0580610 | Msa1027240 | 0.876211 | 1.672422e-68 | -8.615850e-47 |
| Msa0584130 | Msa1027240 | 0.840380 | 9.005423e-58 | -8.615850e-47 |
| Msa0858360 | Msa1027240 | 0.840418 | 8.798599e-58 | -8.615850e-47 |
| Msa0865370 | Msa1027240 | 0.801924 | 7.158085e-49 | -8.615850e-47 |
| Msa0865390 | Msa1027240 | 0.829796 | 4.212969e-55 | -8.615850e-47 |
| Msa0883370 | Msa1027240 | 0.814975 | 1.171648e-51 | -8.615850e-47 |
| Msa0884920 | Msa1027240 | 0.826394 | 2.779776e-54 | -8.615850e-47 |
| Msa0898370 | Msa1027240 | 0.821981 | 3.024290e-53 | -8.615850e-47 |
| Msa0902020 | Msa1027240 | 0.804724 | 1.882951e-49 | -8.615850e-47 |
| Msa0912370 | Msa1027240 | 0.817322 | 3.501593e-52 | -8.615850e-47 |
| Msa0912500 | Msa1027240 | 0.841254 | 5.311925e-58 | -8.615850e-47 |
| Msa0924370 | Msa1027240 | 0.816648 | 4.963350e-52 | -8.615850e-47 |
| Msa0940090 | Msa1027240 | 0.811021 | 8.621231e-51 | -8.615850e-47 |
| Msa0957640 | Msa1027240 | 0.816904 | 4.346774e-52 | -8.615850e-47 |
| Msa0963310 | Msa1027240 | 0.805892 | 1.072039e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027240 | MtrunA17_Chr7g0245741 | 96.140 | 285 | 11 | 0 | 1 | 285 | 42 | 326 | 0.0 | 565 |
| Msa1027240 | MtrunA17_Chr7g0245711 | 89.825 | 285 | 29 | 0 | 1 | 285 | 4 | 288 | 0.0 | 532 |
| Msa1027240 | MtrunA17_Chr7g0245731 | 89.825 | 285 | 29 | 0 | 1 | 285 | 92 | 376 | 0.0 | 532 |
| Msa1027240 | MtrunA17_Chr7g0245641 | 75.958 | 287 | 67 | 1 | 1 | 285 | 80 | 366 | 1.67e-166 | 466 |
| Msa1027240 | MtrunA17_Chr7g0245671 | 74.306 | 288 | 71 | 2 | 1 | 285 | 42 | 329 | 1.11e-159 | 447 |
| Msa1027240 | MtrunA17_Chr7g0245691 | 72.917 | 288 | 75 | 1 | 1 | 285 | 43 | 330 | 5.10e-159 | 446 |
| Msa1027240 | MtrunA17_Chr7g0245631 | 68.070 | 285 | 91 | 0 | 1 | 285 | 42 | 326 | 2.15e-145 | 411 |
| Msa1027240 | MtrunA17_Chr4g0010991 | 47.902 | 286 | 147 | 2 | 2 | 285 | 44 | 329 | 4.87e-86 | 260 |
| Msa1027240 | MtrunA17_Chr1g0155411 | 44.561 | 285 | 154 | 3 | 3 | 285 | 43 | 325 | 7.27e-81 | 247 |
| Msa1027240 | MtrunA17_Chr1g0155431 | 44.912 | 285 | 153 | 3 | 3 | 285 | 43 | 325 | 3.16e-78 | 240 |
| Msa1027240 | MtrunA17_Chr4g0048961 | 38.267 | 277 | 159 | 3 | 17 | 283 | 62 | 336 | 2.01e-62 | 200 |
| Msa1027240 | MtrunA17_Chr4g0042101 | 35.644 | 303 | 171 | 7 | 2 | 285 | 56 | 353 | 3.05e-59 | 192 |
| Msa1027240 | MtrunA17_Chr2g0331211 | 37.801 | 291 | 166 | 9 | 1 | 285 | 38 | 319 | 5.73e-55 | 181 |
| Msa1027240 | MtrunA17_Chr5g0423551 | 34.386 | 285 | 177 | 6 | 5 | 285 | 41 | 319 | 9.67e-55 | 179 |
| Msa1027240 | MtrunA17_Chr8g0363831 | 34.982 | 283 | 170 | 7 | 5 | 282 | 46 | 319 | 5.22e-47 | 160 |
| Msa1027240 | MtrunA17_Chr3g0077231 | 32.302 | 291 | 178 | 6 | 3 | 285 | 41 | 320 | 1.29e-45 | 156 |
| Msa1027240 | MtrunA17_Chr3g0106111 | 35.069 | 288 | 164 | 8 | 8 | 285 | 45 | 319 | 8.76e-44 | 151 |
| Msa1027240 | MtrunA17_Chr2g0281991 | 33.555 | 301 | 175 | 8 | 5 | 285 | 45 | 340 | 1.38e-43 | 151 |
| Msa1027240 | MtrunA17_Chr8g0364051 | 33.333 | 288 | 178 | 7 | 3 | 285 | 43 | 321 | 1.52e-42 | 148 |
| Msa1027240 | MtrunA17_Chr3g0077221 | 31.034 | 290 | 181 | 7 | 3 | 284 | 45 | 323 | 9.93e-41 | 143 |
| Msa1027240 | MtrunA17_Chr5g0431311 | 34.256 | 289 | 165 | 9 | 8 | 285 | 45 | 319 | 1.13e-40 | 143 |
| Msa1027240 | MtrunA17_Chr2g0282001 | 31.544 | 298 | 181 | 6 | 5 | 283 | 44 | 337 | 8.24e-40 | 141 |
| Msa1027240 | MtrunA17_Chr4g0039321 | 32.753 | 287 | 176 | 8 | 5 | 284 | 46 | 322 | 6.36e-39 | 139 |
| Msa1027240 | MtrunA17_Chr4g0002661 | 32.384 | 281 | 178 | 6 | 8 | 285 | 52 | 323 | 3.55e-38 | 137 |
| Msa1027240 | MtrunA17_Chr2g0333781 | 33.451 | 284 | 174 | 9 | 6 | 285 | 57 | 329 | 3.86e-37 | 134 |
| Msa1027240 | MtrunA17_Chr7g0275521 | 32.237 | 304 | 176 | 8 | 5 | 285 | 44 | 340 | 1.50e-35 | 130 |
| Msa1027240 | MtrunA17_Chr4g0001321 | 30.496 | 282 | 185 | 5 | 6 | 285 | 54 | 326 | 8.35e-35 | 128 |
| Msa1027240 | MtrunA17_Chr2g0282011 | 32.215 | 298 | 179 | 7 | 5 | 283 | 45 | 338 | 1.95e-33 | 125 |
| Msa1027240 | MtrunA17_Chr4g0039311 | 32.766 | 235 | 151 | 6 | 5 | 236 | 48 | 278 | 2.15e-33 | 124 |
| Msa1027240 | MtrunA17_Chr2g0291541 | 30.345 | 290 | 178 | 9 | 7 | 285 | 50 | 326 | 1.12e-32 | 122 |
| Msa1027240 | MtrunA17_Chr4g0002961 | 32.384 | 281 | 178 | 6 | 8 | 285 | 52 | 323 | 3.02e-31 | 118 |
| Msa1027240 | MtrunA17_Chr6g0450211 | 31.132 | 212 | 118 | 7 | 16 | 212 | 102 | 300 | 1.59e-23 | 98.2 |
| Msa1027240 | MtrunA17_Chr5g0411071 | 28.440 | 218 | 141 | 5 | 15 | 229 | 55 | 260 | 1.90e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027240 | AT2G45400.3 | 47.931 | 290 | 144 | 4 | 2 | 285 | 19 | 307 | 2.80e-91 | 273 |
| Msa1027240 | AT2G45400.1 | 47.931 | 290 | 144 | 4 | 2 | 285 | 76 | 364 | 1.20e-90 | 273 |
| Msa1027240 | AT2G45400.2 | 49.593 | 246 | 118 | 3 | 2 | 241 | 76 | 321 | 5.04e-79 | 243 |
| Msa1027240 | AT5G42800.1 | 44.561 | 285 | 154 | 3 | 3 | 285 | 43 | 325 | 8.84e-76 | 236 |
| Msa1027240 | AT4G35420.1 | 38.194 | 288 | 166 | 6 | 2 | 285 | 42 | 321 | 2.11e-61 | 197 |
| Msa1027240 | AT2G45400.4 | 51.397 | 179 | 82 | 2 | 2 | 175 | 76 | 254 | 4.84e-56 | 181 |
| Msa1027240 | AT1G61720.1 | 37.710 | 297 | 168 | 7 | 1 | 285 | 46 | 337 | 2.20e-55 | 182 |
| Msa1027240 | AT1G68540.1 | 33.910 | 289 | 181 | 6 | 2 | 285 | 38 | 321 | 5.24e-52 | 173 |
| Msa1027240 | AT1G25460.1 | 34.386 | 285 | 178 | 5 | 5 | 285 | 40 | 319 | 2.33e-51 | 171 |
| Msa1027240 | AT2G02400.1 | 35.959 | 292 | 164 | 8 | 4 | 285 | 40 | 318 | 4.02e-49 | 166 |
| Msa1027240 | AT1G09480.2 | 34.495 | 287 | 179 | 6 | 2 | 285 | 42 | 322 | 3.36e-46 | 158 |
| Msa1027240 | AT4G27250.1 | 31.338 | 284 | 170 | 6 | 15 | 276 | 57 | 337 | 4.60e-46 | 158 |
| Msa1027240 | AT1G09480.1 | 34.495 | 287 | 179 | 6 | 2 | 285 | 89 | 369 | 7.91e-46 | 158 |
| Msa1027240 | AT4G27250.2 | 31.522 | 276 | 170 | 6 | 15 | 276 | 57 | 327 | 5.35e-45 | 155 |
| Msa1027240 | AT1G09510.1 | 36.299 | 281 | 164 | 7 | 8 | 282 | 48 | 319 | 7.76e-45 | 154 |
| Msa1027240 | AT1G09490.2 | 33.449 | 287 | 182 | 6 | 2 | 285 | 11 | 291 | 1.96e-44 | 152 |
| Msa1027240 | AT5G58490.1 | 35.052 | 291 | 172 | 9 | 2 | 285 | 43 | 323 | 5.58e-44 | 152 |
| Msa1027240 | AT1G09490.1 | 33.449 | 287 | 182 | 6 | 2 | 285 | 42 | 322 | 6.24e-44 | 152 |
| Msa1027240 | AT1G51410.1 | 32.270 | 282 | 180 | 7 | 8 | 285 | 49 | 323 | 1.65e-41 | 146 |
| Msa1027240 | AT1G66800.1 | 33.216 | 283 | 182 | 6 | 3 | 285 | 43 | 318 | 3.14e-41 | 145 |
| Msa1027240 | AT5G19440.1 | 33.103 | 290 | 175 | 7 | 3 | 284 | 45 | 323 | 5.23e-41 | 144 |
| Msa1027240 | AT1G15950.3 | 33.684 | 285 | 168 | 7 | 8 | 285 | 52 | 322 | 4.75e-37 | 134 |
| Msa1027240 | AT1G15950.1 | 33.684 | 285 | 168 | 7 | 8 | 285 | 52 | 322 | 4.75e-37 | 134 |
| Msa1027240 | AT1G09500.2 | 31.119 | 286 | 187 | 7 | 2 | 282 | 8 | 288 | 5.24e-37 | 133 |
| Msa1027240 | AT1G09500.1 | 31.119 | 286 | 187 | 7 | 2 | 282 | 42 | 322 | 1.04e-36 | 133 |
| Msa1027240 | AT2G33590.1 | 32.857 | 280 | 163 | 10 | 8 | 277 | 48 | 312 | 1.30e-36 | 133 |
| Msa1027240 | AT1G09500.3 | 31.933 | 238 | 154 | 4 | 2 | 235 | 42 | 275 | 2.54e-36 | 131 |
| Msa1027240 | AT1G76470.1 | 32.143 | 280 | 185 | 4 | 8 | 285 | 46 | 322 | 1.10e-34 | 128 |
| Msa1027240 | AT1G15950.2 | 32.463 | 268 | 171 | 4 | 8 | 273 | 52 | 311 | 6.86e-34 | 126 |
| Msa1027240 | AT1G68540.2 | 32.877 | 219 | 138 | 5 | 71 | 285 | 1 | 214 | 1.91e-33 | 122 |
| Msa1027240 | AT2G33600.1 | 34.783 | 276 | 163 | 9 | 8 | 277 | 48 | 312 | 2.45e-33 | 124 |
| Msa1027240 | AT1G80820.1 | 31.429 | 280 | 181 | 5 | 8 | 285 | 47 | 317 | 4.61e-33 | 124 |
| Msa1027240 | AT1G15950.6 | 34.052 | 232 | 143 | 4 | 8 | 237 | 52 | 275 | 2.07e-31 | 118 |
| Msa1027240 | AT1G15950.5 | 34.052 | 232 | 143 | 4 | 8 | 237 | 52 | 275 | 3.33e-31 | 117 |
| Msa1027240 | AT1G15950.4 | 34.052 | 232 | 143 | 4 | 8 | 237 | 52 | 275 | 3.82e-31 | 118 |
| Msa1027240 | AT1G80820.2 | 32.328 | 232 | 147 | 4 | 8 | 237 | 47 | 270 | 2.47e-28 | 110 |
| Msa1027240 | AT1G15950.7 | 33.043 | 230 | 137 | 6 | 63 | 285 | 5 | 224 | 5.80e-25 | 100 |
| Msa1027240 | AT2G23910.4 | 26.136 | 264 | 175 | 9 | 8 | 262 | 16 | 268 | 1.26e-21 | 92.0 |
| Msa1027240 | AT2G23910.1 | 26.437 | 261 | 172 | 9 | 11 | 262 | 53 | 302 | 2.60e-21 | 91.7 |
| Msa1027240 | AT5G14700.1 | 27.953 | 254 | 151 | 7 | 25 | 259 | 115 | 355 | 1.72e-20 | 90.5 |
| Msa1027240 | AT2G23910.2 | 25.322 | 233 | 160 | 7 | 8 | 236 | 50 | 272 | 1.57e-18 | 83.6 |
| Msa1027240 | AT2G23910.3 | 25.652 | 230 | 157 | 7 | 11 | 236 | 53 | 272 | 2.10e-18 | 83.2 |
| Msa1027240 | AT4G30470.1 | 26.154 | 260 | 161 | 9 | 16 | 261 | 58 | 300 | 1.18e-17 | 81.6 |
| Msa1027240 | AT5G14700.2 | 31.915 | 141 | 73 | 4 | 29 | 156 | 119 | 249 | 5.16e-15 | 73.9 |
Find 47 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCATTGAAACTTTC+TGG | 0.125713 | 7_1:-59541534 | None:intergenic |
| ACCTCTCTGTCTTTGTTATT+TGG | 0.159764 | 7_1:+59541954 | Msa1027240:CDS |
| TATATGAAATTCAGGGTATT+TGG | 0.255630 | 7_1:-59543812 | None:intergenic |
| GAGAAGGCTGTTCTAGAGTT+TGG | 0.265629 | 7_1:+59541843 | Msa1027240:CDS |
| GAGCAATTATATCTCCCTTT+TGG | 0.266827 | 7_1:-59543745 | None:intergenic |
| AGTGTTGGTATATGAAATTC+AGG | 0.275539 | 7_1:-59543820 | None:intergenic |
| CACTGCAACTCCAATTGATT+TGG | 0.296688 | 7_1:+59541581 | Msa1027240:CDS |
| AGAACAATTGATGGAGCATT+AGG | 0.319772 | 7_1:+59541636 | Msa1027240:CDS |
| GGCTTCCTCACAAAACTTCC+AGG | 0.329690 | 7_1:+59541468 | Msa1027240:CDS |
| AGGGAGGTGAAGGAAATTAA+AGG | 0.360048 | 7_1:+59543941 | Msa1027240:intron |
| TCATTCATTTCCAAATCAAT+TGG | 0.363586 | 7_1:-59541591 | None:intergenic |
| ATGTAATGGATGAGAGTTAT+TGG | 0.372531 | 7_1:+59541751 | Msa1027240:CDS |
| ATAAAATATAGTATTAATAA+AGG | 0.379878 | 7_1:+59544163 | Msa1027240:three_prime_UTR |
| GATTCAGTGTTGCAAGGAAA+AGG | 0.394699 | 7_1:+59544051 | Msa1027240:CDS |
| TCTTCATTATTTGCAATGAA+TGG | 0.401037 | 7_1:-59543769 | None:intergenic |
| TGGCTTCTCTCGTCTCCATA+TGG | 0.409487 | 7_1:+59543669 | Msa1027240:CDS |
| TTGCTGCATTGAAACTTTCT+GGG | 0.416184 | 7_1:-59541533 | None:intergenic |
| GTAGGGGACAAGAATCCATT+TGG | 0.425747 | 7_1:+59543649 | Msa1027240:intron |
| CAAGTGCTTCAGCAGTGTAT+TGG | 0.428274 | 7_1:+59541712 | Msa1027240:CDS |
| ATTGAATATGACCAAGCAAA+TGG | 0.453024 | 7_1:-59541804 | None:intergenic |
| TATCATCAACATGCACCATA+TGG | 0.453095 | 7_1:-59543684 | None:intergenic |
| AGTTTCAATGCAGCAATTGA+AGG | 0.458381 | 7_1:+59541540 | Msa1027240:CDS |
| CTTGAGCATCCTAATCCAAA+AGG | 0.458566 | 7_1:+59543730 | Msa1027240:CDS |
| GAGATTTGAAACCATTTGCT+TGG | 0.459886 | 7_1:+59541793 | Msa1027240:CDS |
| TTCTAAAACAATGGCAGAGA+AGG | 0.467203 | 7_1:+59541827 | Msa1027240:CDS |
| TTCATTTGTCCTAAGCGTCC+TGG | 0.480298 | 7_1:+59541921 | Msa1027240:CDS |
| TAAATTGAGCCAGGACGCTT+AGG | 0.480492 | 7_1:-59541930 | None:intergenic |
| ATTCAGTGTTGCAAGGAAAA+GGG | 0.509113 | 7_1:+59544052 | Msa1027240:CDS |
| TGGAGACGAGAGAAGCCAAA+TGG | 0.520904 | 7_1:-59543664 | None:intergenic |
| AGGACGCTTAGGACAAATGA+AGG | 0.523329 | 7_1:-59541919 | None:intergenic |
| ATATTCAATTTCTAAAACAA+TGG | 0.525829 | 7_1:+59541818 | Msa1027240:CDS |
| AGATAAAGATGATGATGTAA+TGG | 0.533409 | 7_1:+59541737 | Msa1027240:CDS |
| ACACAGCCTTGAGGAAATGT+TGG | 0.550570 | 7_1:+59544021 | Msa1027240:CDS |
| AAGGGTCCAAGAACAAAAGT+TGG | 0.557011 | 7_1:-59541900 | None:intergenic |
| TTGAGCATCCTAATCCAAAA+GGG | 0.569459 | 7_1:+59543731 | Msa1027240:CDS |
| ACAGAGCGCAAGAAAGATGT+TGG | 0.569599 | 7_1:+59541447 | None:intergenic |
| CTAGAGTTTGGAGAACAACA+TGG | 0.574839 | 7_1:+59541855 | Msa1027240:CDS |
| AGAGAGGTATAAATTGAGCC+AGG | 0.580168 | 7_1:-59541939 | None:intergenic |
| GCAGCAATTGAAGGATGCAA+AGG | 0.592622 | 7_1:+59541549 | Msa1027240:CDS |
| ACTAGAACTCACTCTAGTGT+TGG | 0.602184 | 7_1:-59543835 | None:intergenic |
| GTGTTGGTATATGAAATTCA+GGG | 0.639563 | 7_1:-59543819 | None:intergenic |
| CGATACGATTCAGTGTTGCA+AGG | 0.647384 | 7_1:+59544045 | Msa1027240:CDS |
| TATCGTCCAACATTTCCTCA+AGG | 0.653115 | 7_1:-59544027 | None:intergenic |
| ACCAAATAACAAAGACAGAG+AGG | 0.665667 | 7_1:-59541955 | None:intergenic |
| AATCAATTGGAGTTGCAGTG+TGG | 0.684696 | 7_1:-59541578 | None:intergenic |
| GGACGCTTAGGACAAATGAA+GGG | 0.710235 | 7_1:-59541918 | None:intergenic |
| CGAGTTCAAACACAGCCTTG+AGG | 0.724622 | 7_1:+59544012 | Msa1027240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTAATAAAAATTG+GGG | + | chr7_1:59542033-59542052 | Msa1027240:intron | 10.0% |
| !! | TCAATATAAATTGATATATT+TGG | + | chr7_1:59542216-59542235 | Msa1027240:intron | 10.0% |
| !!! | CTTTGATTTTTTTTTTTTTT+TGG | + | chr7_1:59544079-59544098 | Msa1027240:exon | 10.0% |
| !!! | ATATTCAATTTCTAAAACAA+TGG | + | chr7_1:59541818-59541837 | Msa1027240:CDS | 15.0% |
| !! | TATTATTAGTGAAAAGATTA+TGG | - | chr7_1:59542604-59542623 | None:intergenic | 15.0% |
| !! | AAATAAGTCATAAAATATAG+TGG | - | chr7_1:59542786-59542805 | None:intergenic | 15.0% |
| !!! | TTATTTTAGAAATCATAGTT+AGG | + | chr7_1:59542800-59542819 | Msa1027240:intron | 15.0% |
| !! | TGTGTTTATAAATTATAAGT+GGG | - | chr7_1:59543095-59543114 | None:intergenic | 15.0% |
| !! | ATGTGTTTATAAATTATAAG+TGG | - | chr7_1:59543096-59543115 | None:intergenic | 15.0% |
| !!! | TGCATAAATTAATTTTCTAA+AGG | - | chr7_1:59543430-59543449 | None:intergenic | 15.0% |
| !!! | ATACCAATAAATTCATTTTT+AGG | + | chr7_1:59543573-59543592 | Msa1027240:intron | 15.0% |
| !!! | TATTTATTCATTTTGTTCAT+AGG | + | chr7_1:59543921-59543940 | Msa1027240:intron | 15.0% |
| !!! | ATTTATTCATTTTGTTCATA+GGG | + | chr7_1:59543922-59543941 | Msa1027240:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGTTACA+AGG | + | chr7_1:59544087-59544106 | Msa1027240:three_prime_UTR | 15.0% |
| !!! | ATTGAAGAATTTTAGCTTTT+GGG | - | chr7_1:59541499-59541518 | None:intergenic | 20.0% |
| !! | ATATAGTCAGAAGAAAAAAA+AGG | - | chr7_1:59542003-59542022 | None:intergenic | 20.0% |
| !!! | AACTAATGATCATTTTTCAA+CGG | + | chr7_1:59542084-59542103 | Msa1027240:intron | 20.0% |
| !! | CCTAAAATATAAGCAAAAAT+TGG | - | chr7_1:59542278-59542297 | None:intergenic | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+AGG | + | chr7_1:59542275-59542294 | Msa1027240:intron | 20.0% |
| !!! | TTTTTGCTTATATTTTAGGA+CGG | + | chr7_1:59542279-59542298 | Msa1027240:intron | 20.0% |
| !!! | ATGGCAATACTTTTTTTTAA+CGG | - | chr7_1:59543508-59543527 | None:intergenic | 20.0% |
| !! | TTCTACATATTAGTTAGATT+GGG | - | chr7_1:59543543-59543562 | None:intergenic | 20.0% |
| !! | ATTCTACATATTAGTTAGAT+TGG | - | chr7_1:59543544-59543563 | None:intergenic | 20.0% |
| !! | ATGCCTAAAAATGAATTTAT+TGG | - | chr7_1:59543579-59543598 | None:intergenic | 20.0% |
| !! | TGCTAATTAAGAATAGAAAA+TGG | + | chr7_1:59543621-59543640 | Msa1027240:intron | 20.0% |
| !! | TAAATACTAGTTACAGTAAA+AGG | - | chr7_1:59543907-59543926 | None:intergenic | 20.0% |
| !!! | CATTGAAGAATTTTAGCTTT+TGG | - | chr7_1:59541500-59541519 | None:intergenic | 25.0% |
| ! | TCATTCATTTCCAAATCAAT+TGG | - | chr7_1:59541594-59541613 | None:intergenic | 25.0% |
| !! | AGATAAAGATGATGATGTAA+TGG | + | chr7_1:59541737-59541756 | Msa1027240:CDS | 25.0% |
| !! | ATAATACCAACTTTTGTTCT+TGG | + | chr7_1:59541894-59541913 | Msa1027240:CDS | 25.0% |
| ! | TTTAATAAAAATTGGGGAAG+AGG | + | chr7_1:59542039-59542058 | Msa1027240:intron | 25.0% |
| ! | GAAGCTATTGTTTATAAATG+TGG | + | chr7_1:59542061-59542080 | Msa1027240:intron | 25.0% |
| ! | TGACTTTATAACCTCAAAAA+TGG | - | chr7_1:59542130-59542149 | None:intergenic | 25.0% |
| !!! | TTTTTGCTTACATTTTGGAA+CGG | - | chr7_1:59542192-59542211 | None:intergenic | 25.0% |
| !!! | ACTCATTTTTGCTTACATTT+TGG | - | chr7_1:59542197-59542216 | None:intergenic | 25.0% |
| !!! | TTTTGCTTATATTTTAGGAC+GGG | + | chr7_1:59542280-59542299 | Msa1027240:intron | 25.0% |
| !! | AAAAACCATCAAATTAGCTT+TGG | + | chr7_1:59542338-59542357 | Msa1027240:intron | 25.0% |
| ! | AAAGAGAGAGAAGATAAAAT+TGG | + | chr7_1:59542366-59542385 | Msa1027240:intron | 25.0% |
| !!! | AATTTAGCTTGTTGTTCTAA+CGG | + | chr7_1:59542718-59542737 | Msa1027240:intron | 25.0% |
| ! | AACAATATGTTTATAAGTGG+AGG | - | chr7_1:59542858-59542877 | None:intergenic | 25.0% |
| ! | CCTAACAATATGTTTATAAG+TGG | - | chr7_1:59542861-59542880 | None:intergenic | 25.0% |
| ! | CCACTTATAAACATATTGTT+AGG | + | chr7_1:59542858-59542877 | Msa1027240:intron | 25.0% |
| !!! | AGTTGTTAAAAGTGTCAAAT+CGG | - | chr7_1:59543137-59543156 | None:intergenic | 25.0% |
| !! | TATTTTGTCAGTATTGTGTT+GGG | - | chr7_1:59543340-59543359 | None:intergenic | 25.0% |
| !! | ATATTTTGTCAGTATTGTGT+TGG | - | chr7_1:59543341-59543360 | None:intergenic | 25.0% |
| ! | AGGAAACTAAGATTCATTTA+AGG | - | chr7_1:59543410-59543429 | None:intergenic | 25.0% |
| ! | AATTAATTTATGCAGTTGTG+TGG | + | chr7_1:59543436-59543455 | Msa1027240:intron | 25.0% |
| ! | CTAATATGTAGAATTCACAA+TGG | + | chr7_1:59543550-59543569 | Msa1027240:intron | 25.0% |
| !! | CATTTTTACAATGAAACTAG+AGG | - | chr7_1:59543603-59543622 | None:intergenic | 25.0% |
| ! | AATAGAAAATGGATGTTGTA+GGG | + | chr7_1:59543632-59543651 | Msa1027240:intron | 25.0% |
| ! | TCTTCATTATTTGCAATGAA+TGG | - | chr7_1:59543772-59543791 | None:intergenic | 25.0% |
| !! | TATATGAAATTCAGGGTATT+TGG | - | chr7_1:59543815-59543834 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTGAGGTTAAATG+TGG | - | chr7_1:59543977-59543996 | None:intergenic | 25.0% |
| ! | TTTAACCTCAAAAAAACTCA+TGG | + | chr7_1:59543979-59543998 | Msa1027240:CDS | 25.0% |
| GTGACAAAAAGAACAATTGA+TGG | + | chr7_1:59541627-59541646 | Msa1027240:CDS | 30.0% | |
| !! | ATGTAATGGATGAGAGTTAT+TGG | + | chr7_1:59541751-59541770 | Msa1027240:CDS | 30.0% |
| ATTGAATATGACCAAGCAAA+TGG | - | chr7_1:59541807-59541826 | None:intergenic | 30.0% | |
| !! | ATTTTTCAACGGACTCAAAT+GGG | + | chr7_1:59542095-59542114 | Msa1027240:intron | 30.0% |
| !!! | TTTTGCTTACATTTTGGAAC+GGG | - | chr7_1:59542191-59542210 | None:intergenic | 30.0% |
| !!! | TTTGCTTATATTTTAGGACG+GGG | + | chr7_1:59542281-59542300 | Msa1027240:intron | 30.0% |
| CATTTCCAAAGCTAATTTGA+TGG | - | chr7_1:59542346-59542365 | None:intergenic | 30.0% | |
| TGTTAGTGTATCTAATTGTG+TGG | + | chr7_1:59542396-59542415 | Msa1027240:intron | 30.0% | |
| TGTATCTAATTGTGTGGATT+AGG | + | chr7_1:59542402-59542421 | Msa1027240:intron | 30.0% | |
| ! | GTATCTAATTGTGTGGATTA+GGG | + | chr7_1:59542403-59542422 | Msa1027240:intron | 30.0% |
| TGTTGAGTATGATGACTTAT+AGG | + | chr7_1:59542456-59542475 | Msa1027240:intron | 30.0% | |
| ! | AATGTTTGGCTCAAGTTTAA+GGG | - | chr7_1:59542528-59542547 | None:intergenic | 30.0% |
| ! | AAATGTTTGGCTCAAGTTTA+AGG | - | chr7_1:59542529-59542548 | None:intergenic | 30.0% |
| !! | AGATGTTTGATAGTGAAGTT+GGG | - | chr7_1:59542659-59542678 | None:intergenic | 30.0% |
| !! | AAGATGTTTGATAGTGAAGT+TGG | - | chr7_1:59542660-59542679 | None:intergenic | 30.0% |
| !!! | GTTTTGTTTGTGGACATAAA+TGG | + | chr7_1:59542938-59542957 | Msa1027240:intron | 30.0% |
| !! | TTAAAAGTGTCAAATCGGAT+AGG | - | chr7_1:59543132-59543151 | None:intergenic | 30.0% |
| AAATATTTGTCGGAAGATGT+CGG | + | chr7_1:59543382-59543401 | Msa1027240:intron | 30.0% | |
| GATTGGGAAAATCAAAGTAA+TGG | - | chr7_1:59543527-59543546 | None:intergenic | 30.0% | |
| GAATAGAAAATGGATGTTGT+AGG | + | chr7_1:59543631-59543650 | Msa1027240:intron | 30.0% | |
| ATAGAAAATGGATGTTGTAG+GGG | + | chr7_1:59543633-59543652 | Msa1027240:intron | 30.0% | |
| ! | TTATATCTCCCTTTTGGATT+AGG | - | chr7_1:59543742-59543761 | None:intergenic | 30.0% |
| ! | GTGTTGGTATATGAAATTCA+GGG | - | chr7_1:59543822-59543841 | None:intergenic | 30.0% |
| !! | AGTGTTGGTATATGAAATTC+AGG | - | chr7_1:59543823-59543842 | None:intergenic | 30.0% |
| ! | TATTCATTTTGTTCATAGGG+AGG | + | chr7_1:59543925-59543944 | Msa1027240:intron | 30.0% |
| !!! | TTTTTGGTTACAAGGCTAAA+AGG | + | chr7_1:59544095-59544114 | Msa1027240:three_prime_UTR | 30.0% |
| !! | TTTTGGTTACAAGGCTAAAA+GGG | + | chr7_1:59544096-59544115 | Msa1027240:three_prime_UTR | 30.0% |
| TTGCTGCATTGAAACTTTCT+GGG | - | chr7_1:59541536-59541555 | None:intergenic | 35.0% | |
| ATTGCTGCATTGAAACTTTC+TGG | - | chr7_1:59541537-59541556 | None:intergenic | 35.0% | |
| AGTTTCAATGCAGCAATTGA+AGG | + | chr7_1:59541540-59541559 | Msa1027240:CDS | 35.0% | |
| ! | AGAACAATTGATGGAGCATT+AGG | + | chr7_1:59541636-59541655 | Msa1027240:CDS | 35.0% |
| ! | GAGATTTGAAACCATTTGCT+TGG | + | chr7_1:59541793-59541812 | Msa1027240:CDS | 35.0% |
| !! | TTCTAAAACAATGGCAGAGA+AGG | + | chr7_1:59541827-59541846 | Msa1027240:CDS | 35.0% |
| !! | ACCTCTCTGTCTTTGTTATT+TGG | + | chr7_1:59541954-59541973 | Msa1027240:CDS | 35.0% |
| ACCAAATAACAAAGACAGAG+AGG | - | chr7_1:59541958-59541977 | None:intergenic | 35.0% | |
| !! | CATTTTTCAACGGACTCAAA+TGG | + | chr7_1:59542094-59542113 | Msa1027240:intron | 35.0% |
| !! | GGATTTGAACTCCATTTTTG+AGG | + | chr7_1:59542116-59542135 | Msa1027240:intron | 35.0% |
| TGCATTAGATGTCAACTTAG+TGG | - | chr7_1:59542161-59542180 | None:intergenic | 35.0% | |
| !!! | TTTGCTTACATTTTGGAACG+GGG | - | chr7_1:59542190-59542209 | None:intergenic | 35.0% |
| !!! | TTGCTTATATTTTAGGACGG+GGG | + | chr7_1:59542282-59542301 | Msa1027240:intron | 35.0% |
| !! | ACTTATAGGTACTGAGAAGT+GGG | + | chr7_1:59542470-59542489 | Msa1027240:intron | 35.0% |
| !! | TTGAGCCAAACATTTGTTGT+GGG | + | chr7_1:59542534-59542553 | Msa1027240:intron | 35.0% |
| CAGTTCAATGATGCTATAGT+TGG | + | chr7_1:59542577-59542596 | Msa1027240:intron | 35.0% | |
| !!! | GTGTTTTAAGAGTCTCACAT+CGG | - | chr7_1:59542895-59542914 | None:intergenic | 35.0% |
| CAAACAAAACCCAATAGTGT+TGG | - | chr7_1:59542928-59542947 | None:intergenic | 35.0% | |
| !!! | ACACTATTGGGTTTTGTTTG+TGG | + | chr7_1:59542928-59542947 | Msa1027240:intron | 35.0% |
| TTGTTTGTGGACATAAATGG+TGG | + | chr7_1:59542941-59542960 | Msa1027240:intron | 35.0% | |
| TGTTTGTGGACATAAATGGT+GGG | + | chr7_1:59542942-59542961 | Msa1027240:intron | 35.0% | |
| AGAGTCTCTTCAAAATCCAT+CGG | - | chr7_1:59543001-59543020 | None:intergenic | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | + | chr7_1:59543020-59543039 | Msa1027240:intron | 35.0% | |
| !! | ATCACATAAGTCGGTTTTGT+GGG | - | chr7_1:59543062-59543081 | None:intergenic | 35.0% |
| GCAATACTCATCACATAAGT+CGG | - | chr7_1:59543071-59543090 | None:intergenic | 35.0% | |
| AACCTCATCAAAATTGCAAC+TGG | + | chr7_1:59543161-59543180 | Msa1027240:intron | 35.0% | |
| !! | AACCAGTTGCAATTTTGATG+AGG | - | chr7_1:59543166-59543185 | None:intergenic | 35.0% |
| CAAAATTGCAACTGGTTGAT+TGG | + | chr7_1:59543169-59543188 | Msa1027240:intron | 35.0% | |
| AATATTTGTCGGAAGATGTC+GGG | + | chr7_1:59543383-59543402 | Msa1027240:intron | 35.0% | |
| GTTGTGTGGAAGAATACATT+TGG | + | chr7_1:59543450-59543469 | Msa1027240:intron | 35.0% | |
| TATCATCAACATGCACCATA+TGG | - | chr7_1:59543687-59543706 | None:intergenic | 35.0% | |
| TTGAGCATCCTAATCCAAAA+GGG | + | chr7_1:59543731-59543750 | Msa1027240:CDS | 35.0% | |
| ! | GAGCAATTATATCTCCCTTT+TGG | - | chr7_1:59543748-59543767 | None:intergenic | 35.0% |
| !!! | AGCATCCATGAGTTTTTTTG+AGG | - | chr7_1:59543987-59544006 | None:intergenic | 35.0% |
| TCAAAAAAACTCATGGATGC+TGG | + | chr7_1:59543986-59544005 | Msa1027240:CDS | 35.0% | |
| ATTCAGTGTTGCAAGGAAAA+GGG | + | chr7_1:59544052-59544071 | Msa1027240:CDS | 35.0% | |
| AATCAATTGGAGTTGCAGTG+TGG | - | chr7_1:59541581-59541600 | None:intergenic | 40.0% | |
| CACTGCAACTCCAATTGATT+TGG | + | chr7_1:59541581-59541600 | Msa1027240:CDS | 40.0% | |
| CTAGAGTTTGGAGAACAACA+TGG | + | chr7_1:59541855-59541874 | Msa1027240:CDS | 40.0% | |
| AAGGGTCCAAGAACAAAAGT+TGG | - | chr7_1:59541903-59541922 | None:intergenic | 40.0% | |
| ! | AGAGAGGTATAAATTGAGCC+AGG | - | chr7_1:59541942-59541961 | None:intergenic | 40.0% |
| !!! | TTGCTTACATTTTGGAACGG+GGG | - | chr7_1:59542189-59542208 | None:intergenic | 40.0% |
| TAGGGATCAGTTGGTCAATT+AGG | + | chr7_1:59542421-59542440 | Msa1027240:intron | 40.0% | |
| !! | GACTTATAGGTACTGAGAAG+TGG | + | chr7_1:59542469-59542488 | Msa1027240:intron | 40.0% |
| ! | CTTGAGCCAAACATTTGTTG+TGG | + | chr7_1:59542533-59542552 | Msa1027240:intron | 40.0% |
| !! | TGAGCCAAACATTTGTTGTG+GGG | + | chr7_1:59542535-59542554 | Msa1027240:intron | 40.0% |
| TTAAGAGTCTCACATCGGAT+AGG | - | chr7_1:59542890-59542909 | None:intergenic | 40.0% | |
| GAGTCTCTTCAAAATCCATC+GGG | - | chr7_1:59543000-59543019 | None:intergenic | 40.0% | |
| ! | CCTAACCACGATTTCTAAGA+TGG | - | chr7_1:59543028-59543047 | None:intergenic | 40.0% |
| CCATCTTAGAAATCGTGGTT+AGG | + | chr7_1:59543025-59543044 | Msa1027240:intron | 40.0% | |
| !! | CATCACATAAGTCGGTTTTG+TGG | - | chr7_1:59543063-59543082 | None:intergenic | 40.0% |
| CTTGAGCATCCTAATCCAAA+AGG | + | chr7_1:59543730-59543749 | Msa1027240:CDS | 40.0% | |
| ACTAGAACTCACTCTAGTGT+TGG | - | chr7_1:59543838-59543857 | None:intergenic | 40.0% | |
| ! | TTTTGTTCATAGGGAGGTGA+AGG | + | chr7_1:59543931-59543950 | Msa1027240:intron | 40.0% |
| AGGGAGGTGAAGGAAATTAA+AGG | + | chr7_1:59543941-59543960 | Msa1027240:intron | 40.0% | |
| TATCGTCCAACATTTCCTCA+AGG | - | chr7_1:59544030-59544049 | None:intergenic | 40.0% | |
| GATTCAGTGTTGCAAGGAAA+AGG | + | chr7_1:59544051-59544070 | Msa1027240:CDS | 40.0% | |
| !! | ATGCACCTGGAAGTTTTGTG+AGG | - | chr7_1:59541476-59541495 | None:intergenic | 45.0% |
| !!! | TTTAGCTTTTGGGATGCACC+TGG | - | chr7_1:59541489-59541508 | None:intergenic | 45.0% |
| GCAGCAATTGAAGGATGCAA+AGG | + | chr7_1:59541549-59541568 | Msa1027240:CDS | 45.0% | |
| CAAGTGCTTCAGCAGTGTAT+TGG | + | chr7_1:59541712-59541731 | Msa1027240:CDS | 45.0% | |
| !! | GAGAAGGCTGTTCTAGAGTT+TGG | + | chr7_1:59541843-59541862 | Msa1027240:CDS | 45.0% |
| GGACGCTTAGGACAAATGAA+GGG | - | chr7_1:59541921-59541940 | None:intergenic | 45.0% | |
| AGGACGCTTAGGACAAATGA+AGG | - | chr7_1:59541922-59541941 | None:intergenic | 45.0% | |
| TTCATTTGTCCTAAGCGTCC+TGG | + | chr7_1:59541921-59541940 | Msa1027240:CDS | 45.0% | |
| TAAATTGAGCCAGGACGCTT+AGG | - | chr7_1:59541933-59541952 | None:intergenic | 45.0% | |
| !!! | TGCTTACATTTTGGAACGGG+GGG | - | chr7_1:59542188-59542207 | None:intergenic | 45.0% |
| !! | TGTGTGGATTAGGGATCAGT+TGG | + | chr7_1:59542412-59542431 | Msa1027240:intron | 45.0% |
| !! | ATAGGTACTGAGAAGTGGGA+AGG | + | chr7_1:59542474-59542493 | Msa1027240:intron | 45.0% |
| ! | TTTGGCTCAAGTTTAAGGGC+AGG | - | chr7_1:59542524-59542543 | None:intergenic | 45.0% |
| TCGTCCCCACAACAAATGTT+TGG | - | chr7_1:59542542-59542561 | None:intergenic | 45.0% | |
| AGCATCATTGAACTGTACCG+CGG | - | chr7_1:59542572-59542591 | None:intergenic | 45.0% | |
| ! | TTGTGGACATAAATGGTGGG+TGG | + | chr7_1:59542945-59542964 | Msa1027240:intron | 45.0% |
| !! | GTCTGATAGCGGAAACTTGA+TGG | + | chr7_1:59542967-59542986 | Msa1027240:intron | 45.0% |
| GTGTCAAATCGGATAGGAGA+TGG | - | chr7_1:59543126-59543145 | None:intergenic | 45.0% | |
| GTAGGGGACAAGAATCCATT+TGG | + | chr7_1:59543649-59543668 | Msa1027240:intron | 45.0% | |
| ACACAGCCTTGAGGAAATGT+TGG | + | chr7_1:59544021-59544040 | Msa1027240:CDS | 45.0% | |
| CGATACGATTCAGTGTTGCA+AGG | + | chr7_1:59544045-59544064 | Msa1027240:CDS | 45.0% | |
| !!! | ATTGTTTTTTTAATAAAAAT+TGG | + | chr7_1:59542031-59542050 | Msa1027240:intron | 5.0% |
| !!! | TTGTTTTTTTAATAAAAATT+GGG | + | chr7_1:59542032-59542051 | Msa1027240:intron | 5.0% |
| !! | ATATAAAAAAAAATATTTGT+CGG | + | chr7_1:59543372-59543391 | Msa1027240:intron | 5.0% |
| GGCTTCCTCACAAAACTTCC+AGG | + | chr7_1:59541468-59541487 | Msa1027240:CDS | 50.0% | |
| CATCATTGAACTGTACCGCG+GGG | - | chr7_1:59542570-59542589 | None:intergenic | 50.0% | |
| GCATCATTGAACTGTACCGC+GGG | - | chr7_1:59542571-59542590 | None:intergenic | 50.0% | |
| CCTCACAAGCTGGTTGTGTT+AGG | - | chr7_1:59542826-59542845 | None:intergenic | 50.0% | |
| CCTAACACAACCAGCTTGTG+AGG | + | chr7_1:59542823-59542842 | Msa1027240:intron | 50.0% | |
| GTCTCACATCGGATAGGAGA+TGG | - | chr7_1:59542884-59542903 | None:intergenic | 50.0% | |
| !! | CAATAGTGTTGGTCGTGAGG+GGG | - | chr7_1:59542917-59542936 | None:intergenic | 50.0% |
| !! | CCAATAGTGTTGGTCGTGAG+GGG | - | chr7_1:59542918-59542937 | None:intergenic | 50.0% |
| !! | CCCAATAGTGTTGGTCGTGA+GGG | - | chr7_1:59542919-59542938 | None:intergenic | 50.0% |
| CCCTCACGACCAACACTATT+GGG | + | chr7_1:59542916-59542935 | Msa1027240:intron | 50.0% | |
| !! | ACCCAATAGTGTTGGTCGTG+AGG | - | chr7_1:59542920-59542939 | None:intergenic | 50.0% |
| !! | AATGGTGGGTGGTCTGATAG+CGG | + | chr7_1:59542956-59542975 | Msa1027240:intron | 50.0% |
| !! | GATAGCGGAAACTTGATGGC+AGG | + | chr7_1:59542971-59542990 | Msa1027240:intron | 50.0% |
| TGGAGACGAGAGAAGCCAAA+TGG | - | chr7_1:59543667-59543686 | None:intergenic | 50.0% | |
| TGGCTTCTCTCGTCTCCATA+TGG | + | chr7_1:59543669-59543688 | Msa1027240:CDS | 50.0% | |
| CGAGTTCAAACACAGCCTTG+AGG | + | chr7_1:59544012-59544031 | Msa1027240:CDS | 50.0% | |
| CACAACCAGCTTGTGAGGTG+AGG | + | chr7_1:59542828-59542847 | Msa1027240:intron | 55.0% | |
| GCAATCCTCACCTCACAAGC+TGG | - | chr7_1:59542836-59542855 | None:intergenic | 55.0% | |
| CCCCTCACGACCAACACTAT+TGG | + | chr7_1:59542915-59542934 | Msa1027240:intron | 55.0% | |
| ! | AGCGGAAACTTGATGGCAGG+TGG | + | chr7_1:59542974-59542993 | Msa1027240:intron | 55.0% |
| ! | CTTGATGGCAGGTGGCCCGA+TGG | + | chr7_1:59542982-59543001 | Msa1027240:intron | 65.0% |
| GTGGGGACGACGTGTCCCCG+CGG | + | chr7_1:59542552-59542571 | Msa1027240:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 59541453 | 59544185 | 59541453 | ID=Msa1027240;Name=Msa1027240 |
| chr7_1 | mRNA | 59541453 | 59544185 | 59541453 | ID=Msa1027240-mRNA-1;Parent=Msa1027240;Name=Msa1027240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.33|1|1|0.66|3|101|285 |
| chr7_1 | exon | 59541453 | 59541975 | 59541453 | ID=Msa1027240-mRNA-1:exon:12104;Parent=Msa1027240-mRNA-1 |
| chr7_1 | exon | 59543653 | 59543845 | 59543653 | ID=Msa1027240-mRNA-1:exon:12105;Parent=Msa1027240-mRNA-1 |
| chr7_1 | exon | 59543943 | 59544185 | 59543943 | ID=Msa1027240-mRNA-1:exon:12106;Parent=Msa1027240-mRNA-1 |
| chr7_1 | CDS | 59541453 | 59541975 | 59541453 | ID=Msa1027240-mRNA-1:cds;Parent=Msa1027240-mRNA-1 |
| chr7_1 | CDS | 59543653 | 59543845 | 59543653 | ID=Msa1027240-mRNA-1:cds;Parent=Msa1027240-mRNA-1 |
| chr7_1 | CDS | 59543943 | 59544084 | 59543943 | ID=Msa1027240-mRNA-1:cds;Parent=Msa1027240-mRNA-1 |
| chr7_1 | three_prime_UTR | 59544085 | 59544185 | 59544085 | ID=Msa1027240-mRNA-1:three_prime_utr;Parent=Msa1027240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
