Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116990 | XP_013449698.1 | 92.411 | 224 | 13 | 1 | 1 | 220 | 1 | 224 | 2.32e-144 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116990 | sp|Q9SQR4|ADRC3_ARATH | 68.981 | 216 | 60 | 1 | 4 | 212 | 12 | 227 | 9.46e-101 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116990 | A0A072U2V3 | 92.411 | 224 | 13 | 1 | 1 | 220 | 1 | 224 | 1.11e-144 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615130 | Msa1116990 | 0.803407 | 3.538703e-49 | -8.615850e-47 |
| Msa0680100 | Msa1116990 | 0.824814 | 6.581109e-54 | -8.615850e-47 |
| Msa0792290 | Msa1116990 | 0.826929 | 2.071744e-54 | -8.615850e-47 |
| Msa1077320 | Msa1116990 | 0.822843 | 1.906517e-53 | -8.615850e-47 |
| Msa1077460 | Msa1116990 | 0.804102 | 2.537770e-49 | -8.615850e-47 |
| Msa1079100 | Msa1116990 | 0.823059 | 1.698075e-53 | -8.615850e-47 |
| Msa0354800 | Msa1116990 | -0.809586 | 1.758339e-50 | -8.615850e-47 |
| Msa1116990 | Msa1124010 | 0.831707 | 1.433375e-55 | -8.615850e-47 |
| Msa1116990 | Msa1164120 | 0.809672 | 1.685696e-50 | -8.615850e-47 |
| Msa1116990 | Msa1173470 | 0.804766 | 1.845270e-49 | -8.615850e-47 |
| Msa1116990 | Msa1177160 | 0.811614 | 6.409731e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116990 | MtrunA17_Chr7g0259521 | 92.411 | 224 | 13 | 1 | 1 | 220 | 1 | 224 | 5.71e-148 | 412 |
| Msa1116990 | MtrunA17_Chr7g0259531 | 84.689 | 209 | 32 | 0 | 3 | 211 | 8 | 216 | 7.32e-126 | 357 |
| Msa1116990 | MtrunA17_Chr1g0182511 | 66.516 | 221 | 72 | 2 | 4 | 222 | 12 | 232 | 1.31e-93 | 275 |
| Msa1116990 | MtrunA17_Chr3g0122901 | 34.872 | 195 | 122 | 3 | 6 | 200 | 75 | 264 | 1.58e-25 | 101 |
| Msa1116990 | MtrunA17_Chr7g0244061 | 35.149 | 202 | 118 | 6 | 6 | 203 | 29 | 221 | 7.81e-21 | 88.6 |
| Msa1116990 | MtrunA17_Chr7g0268591 | 31.776 | 214 | 136 | 5 | 6 | 218 | 33 | 237 | 2.78e-20 | 87.0 |
| Msa1116990 | MtrunA17_Chr4g0044131 | 31.220 | 205 | 133 | 3 | 1 | 203 | 1 | 199 | 1.65e-19 | 84.7 |
| Msa1116990 | MtrunA17_Chr6g0459351 | 31.000 | 200 | 132 | 3 | 2 | 200 | 9 | 203 | 2.23e-19 | 84.3 |
| Msa1116990 | MtrunA17_Chr6g0459281 | 31.000 | 200 | 132 | 3 | 2 | 200 | 9 | 203 | 4.97e-19 | 83.2 |
| Msa1116990 | MtrunA17_Chr7g0267011 | 30.348 | 201 | 132 | 3 | 1 | 199 | 1 | 195 | 8.80e-19 | 80.9 |
| Msa1116990 | MtrunA17_Chr6g0459261 | 29.412 | 221 | 144 | 4 | 3 | 216 | 22 | 237 | 1.37e-18 | 82.0 |
| Msa1116990 | MtrunA17_Chr3g0112151 | 31.140 | 228 | 135 | 10 | 4 | 220 | 84 | 300 | 1.77e-18 | 82.8 |
| Msa1116990 | MtrunA17_Chr6g0459271 | 29.167 | 216 | 145 | 4 | 3 | 215 | 10 | 220 | 1.78e-18 | 81.6 |
| Msa1116990 | MtrunA17_Chr3g0112171 | 31.841 | 201 | 120 | 8 | 6 | 200 | 15 | 204 | 8.34e-17 | 77.0 |
| Msa1116990 | MtrunA17_Chr4g0032141 | 30.769 | 221 | 141 | 6 | 6 | 220 | 56 | 270 | 1.70e-16 | 77.0 |
| Msa1116990 | MtrunA17_Chr3g0112271 | 30.973 | 226 | 134 | 10 | 6 | 220 | 17 | 231 | 2.41e-16 | 75.9 |
| Msa1116990 | MtrunA17_Chr6g0459331 | 29.146 | 199 | 135 | 3 | 3 | 200 | 10 | 203 | 2.92e-16 | 75.5 |
| Msa1116990 | MtrunA17_Chr6g0459301 | 28.500 | 200 | 137 | 3 | 2 | 200 | 10 | 204 | 7.32e-16 | 74.3 |
| Msa1116990 | MtrunA17_Chr4g0028911 | 31.336 | 217 | 130 | 10 | 5 | 212 | 7 | 213 | 8.72e-16 | 74.3 |
| Msa1116990 | MtrunA17_Chr3g0112141 | 32.836 | 201 | 118 | 8 | 6 | 200 | 17 | 206 | 1.15e-15 | 73.9 |
| Msa1116990 | MtrunA17_Chr4g0028921 | 31.455 | 213 | 130 | 9 | 6 | 212 | 11 | 213 | 1.87e-15 | 73.6 |
| Msa1116990 | MtrunA17_Chr7g0239511 | 29.778 | 225 | 142 | 6 | 6 | 220 | 16 | 234 | 3.07e-15 | 72.8 |
| Msa1116990 | MtrunA17_Chr4g0076931 | 29.648 | 199 | 127 | 6 | 8 | 201 | 8 | 198 | 1.37e-14 | 70.5 |
| Msa1116990 | MtrunA17_Chr3g0112261 | 28.054 | 221 | 147 | 7 | 6 | 220 | 19 | 233 | 1.39e-14 | 71.2 |
| Msa1116990 | MtrunA17_Chr3g0084871 | 32.143 | 196 | 126 | 3 | 6 | 200 | 16 | 205 | 1.42e-14 | 71.2 |
| Msa1116990 | MtrunA17_Chr7g0239481 | 29.442 | 197 | 132 | 5 | 6 | 201 | 15 | 205 | 2.33e-14 | 70.5 |
| Msa1116990 | MtrunA17_Chr7g0267001 | 28.293 | 205 | 121 | 3 | 1 | 203 | 1 | 181 | 2.53e-14 | 70.1 |
| Msa1116990 | MtrunA17_Chr1g0171831 | 30.180 | 222 | 126 | 10 | 6 | 212 | 14 | 221 | 2.86e-14 | 70.1 |
| Msa1116990 | MtrunA17_Chr7g0252031 | 29.302 | 215 | 133 | 8 | 6 | 210 | 35 | 240 | 3.35e-14 | 70.5 |
| Msa1116990 | MtrunA17_Chr7g0239451 | 30.808 | 198 | 128 | 4 | 6 | 201 | 16 | 206 | 3.37e-14 | 69.7 |
| Msa1116990 | MtrunA17_Chr7g0249571 | 28.571 | 196 | 133 | 4 | 6 | 198 | 38 | 229 | 3.92e-14 | 70.1 |
| Msa1116990 | MtrunA17_Chr7g0266981 | 30.612 | 196 | 128 | 4 | 6 | 200 | 13 | 201 | 4.09e-14 | 69.7 |
| Msa1116990 | MtrunA17_Chr4g0033091 | 28.713 | 202 | 127 | 7 | 8 | 201 | 26 | 218 | 4.67e-14 | 69.3 |
| Msa1116990 | MtrunA17_Chr4g0044111 | 30.612 | 196 | 128 | 4 | 6 | 200 | 13 | 201 | 6.77e-14 | 69.3 |
| Msa1116990 | MtrunA17_Chr4g0025971 | 30.198 | 202 | 128 | 6 | 6 | 202 | 14 | 207 | 7.54e-14 | 68.9 |
| Msa1116990 | MtrunA17_Chr4g0074511 | 27.638 | 199 | 133 | 5 | 6 | 198 | 40 | 233 | 1.03e-13 | 68.9 |
| Msa1116990 | MtrunA17_Chr7g0239491 | 30.457 | 197 | 130 | 5 | 6 | 201 | 15 | 205 | 1.52e-13 | 68.2 |
| Msa1116990 | MtrunA17_Chr4g0026001 | 28.169 | 213 | 136 | 4 | 1 | 202 | 1 | 207 | 2.52e-13 | 67.4 |
| Msa1116990 | MtrunA17_Chr4g0025981 | 27.320 | 194 | 135 | 2 | 7 | 200 | 42 | 229 | 1.81e-12 | 65.5 |
| Msa1116990 | MtrunA17_Chr7g0266891 | 30.102 | 196 | 129 | 4 | 6 | 200 | 7 | 195 | 1.82e-12 | 65.1 |
| Msa1116990 | MtrunA17_Chr4g0040371 | 27.136 | 199 | 135 | 3 | 6 | 203 | 19 | 208 | 2.48e-12 | 64.7 |
| Msa1116990 | MtrunA17_Chr0c30g0494101 | 28.788 | 198 | 130 | 5 | 6 | 198 | 40 | 231 | 4.00e-12 | 64.3 |
| Msa1116990 | MtrunA17_Chr3g0142651 | 30.233 | 129 | 89 | 1 | 93 | 221 | 1 | 128 | 9.14e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116990 | AT3G03980.1 | 68.981 | 216 | 60 | 1 | 4 | 212 | 12 | 227 | 9.62e-102 | 296 |
| Msa1116990 | AT5G18210.1 | 67.421 | 221 | 68 | 2 | 6 | 222 | 8 | 228 | 2.56e-100 | 292 |
| Msa1116990 | AT5G18210.2 | 67.421 | 221 | 68 | 2 | 6 | 222 | 8 | 228 | 3.64e-100 | 292 |
| Msa1116990 | AT3G04000.1 | 57.895 | 228 | 87 | 2 | 4 | 222 | 12 | 239 | 2.59e-87 | 259 |
| Msa1116990 | AT4G13180.1 | 58.095 | 210 | 88 | 0 | 2 | 211 | 9 | 218 | 9.20e-87 | 258 |
| Msa1116990 | AT1G24360.1 | 30.275 | 218 | 142 | 4 | 6 | 223 | 74 | 281 | 1.66e-21 | 91.3 |
| Msa1116990 | AT3G51680.1 | 34.975 | 203 | 123 | 6 | 6 | 203 | 32 | 230 | 9.85e-19 | 83.2 |
| Msa1116990 | AT5G06060.1 | 30.769 | 221 | 141 | 8 | 6 | 220 | 9 | 223 | 1.70e-18 | 82.0 |
| Msa1116990 | AT3G55310.1 | 31.163 | 215 | 140 | 7 | 6 | 215 | 17 | 228 | 6.61e-18 | 80.9 |
| Msa1116990 | AT1G52340.1 | 28.972 | 214 | 148 | 3 | 6 | 219 | 18 | 227 | 1.96e-17 | 79.3 |
| Msa1116990 | AT3G26760.1 | 29.064 | 203 | 130 | 7 | 2 | 200 | 32 | 224 | 7.02e-17 | 78.2 |
| Msa1116990 | AT3G55290.1 | 29.767 | 215 | 143 | 7 | 6 | 215 | 18 | 229 | 1.48e-16 | 77.0 |
| Msa1116990 | AT1G63380.3 | 29.032 | 217 | 145 | 8 | 6 | 216 | 15 | 228 | 1.50e-16 | 77.0 |
| Msa1116990 | AT2G29290.2 | 30.909 | 220 | 143 | 6 | 6 | 222 | 7 | 220 | 1.56e-16 | 76.6 |
| Msa1116990 | AT3G55290.2 | 29.767 | 215 | 143 | 7 | 6 | 215 | 17 | 228 | 1.62e-16 | 77.0 |
| Msa1116990 | AT1G63380.4 | 29.032 | 217 | 145 | 8 | 6 | 216 | 19 | 232 | 2.00e-16 | 76.6 |
| Msa1116990 | AT3G46170.1 | 29.767 | 215 | 143 | 7 | 6 | 215 | 26 | 237 | 2.03e-16 | 76.6 |
| Msa1116990 | AT1G63380.2 | 29.032 | 217 | 145 | 8 | 6 | 216 | 22 | 235 | 2.09e-16 | 76.6 |
| Msa1116990 | AT1G63380.1 | 28.571 | 217 | 146 | 7 | 6 | 216 | 17 | 230 | 2.31e-16 | 76.6 |
| Msa1116990 | AT1G62610.3 | 28.767 | 219 | 143 | 9 | 6 | 216 | 15 | 228 | 3.83e-16 | 75.9 |
| Msa1116990 | AT1G62610.1 | 28.767 | 219 | 143 | 9 | 6 | 216 | 14 | 227 | 4.36e-16 | 75.5 |
| Msa1116990 | AT1G62610.2 | 28.767 | 219 | 143 | 9 | 6 | 216 | 13 | 226 | 4.44e-16 | 75.5 |
| Msa1116990 | AT1G62610.4 | 28.311 | 219 | 144 | 8 | 6 | 216 | 19 | 232 | 5.31e-16 | 75.5 |
| Msa1116990 | AT2G17845.1 | 30.198 | 202 | 131 | 7 | 6 | 200 | 47 | 245 | 2.37e-15 | 73.9 |
| Msa1116990 | AT2G29260.1 | 30.366 | 191 | 126 | 5 | 11 | 200 | 73 | 257 | 5.43e-15 | 73.2 |
| Msa1116990 | AT2G30670.1 | 31.364 | 220 | 141 | 6 | 6 | 220 | 7 | 221 | 1.38e-14 | 71.2 |
| Msa1116990 | AT2G29150.1 | 31.982 | 222 | 136 | 8 | 6 | 220 | 16 | 229 | 1.83e-14 | 70.9 |
| Msa1116990 | AT2G29360.1 | 31.019 | 216 | 138 | 7 | 11 | 222 | 21 | 229 | 3.07e-14 | 70.5 |
| Msa1116990 | AT2G29350.1 | 31.163 | 215 | 137 | 8 | 11 | 220 | 20 | 228 | 1.03e-13 | 68.9 |
| Msa1116990 | AT2G29310.1 | 29.545 | 220 | 145 | 5 | 6 | 220 | 7 | 221 | 1.95e-13 | 68.2 |
| Msa1116990 | AT2G29310.3 | 30.256 | 195 | 131 | 3 | 6 | 200 | 7 | 196 | 2.11e-13 | 67.0 |
| Msa1116990 | AT1G54870.2 | 27.982 | 218 | 133 | 8 | 6 | 211 | 84 | 289 | 2.22e-13 | 68.6 |
| Msa1116990 | AT1G54870.1 | 27.982 | 218 | 133 | 8 | 6 | 211 | 82 | 287 | 2.37e-13 | 68.6 |
| Msa1116990 | AT2G29320.1 | 30.667 | 225 | 137 | 8 | 6 | 220 | 13 | 228 | 2.66e-13 | 67.8 |
| Msa1116990 | AT1G07440.1 | 30.396 | 227 | 134 | 11 | 6 | 222 | 12 | 224 | 3.51e-13 | 67.4 |
| Msa1116990 | AT5G50700.1 | 29.911 | 224 | 140 | 10 | 6 | 221 | 45 | 259 | 4.74e-13 | 67.8 |
| Msa1116990 | AT5G50600.1 | 29.911 | 224 | 140 | 10 | 6 | 221 | 45 | 259 | 4.74e-13 | 67.8 |
| Msa1116990 | AT2G29300.1 | 30.667 | 225 | 137 | 8 | 6 | 220 | 7 | 222 | 5.42e-13 | 67.0 |
| Msa1116990 | AT2G29290.1 | 32.530 | 166 | 106 | 5 | 60 | 222 | 41 | 203 | 8.16e-13 | 66.2 |
| Msa1116990 | AT2G29320.3 | 31.500 | 200 | 123 | 6 | 4 | 198 | 11 | 201 | 1.58e-12 | 64.7 |
| Msa1116990 | AT2G29350.2 | 30.928 | 194 | 127 | 6 | 11 | 203 | 20 | 207 | 5.17e-12 | 63.5 |
| Msa1116990 | AT2G29370.1 | 32.143 | 196 | 122 | 7 | 6 | 198 | 16 | 203 | 6.25e-12 | 63.9 |
| Msa1116990 | AT2G47120.1 | 28.431 | 204 | 131 | 4 | 1 | 200 | 1 | 193 | 8.04e-12 | 63.5 |
| Msa1116990 | AT3G05260.1 | 26.887 | 212 | 144 | 5 | 6 | 212 | 37 | 242 | 1.76e-11 | 62.8 |
| Msa1116990 | AT1G07450.1 | 29.500 | 200 | 125 | 8 | 6 | 200 | 8 | 196 | 2.10e-11 | 62.4 |
| Msa1116990 | AT2G47130.1 | 27.778 | 216 | 146 | 6 | 1 | 215 | 1 | 207 | 3.46e-11 | 61.6 |
| Msa1116990 | AT3G26770.1 | 26.267 | 217 | 143 | 6 | 6 | 213 | 41 | 249 | 6.35e-11 | 61.2 |
Find 64 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGAACATAAACTTAAA+AGG | 0.314731 | 7_3:-65035951 | Msa1116990:CDS |
| GGAAGCAATGACGAAGATTC+TGG | 0.335623 | 7_3:-65035793 | Msa1116990:CDS |
| GCGAAGGAGCTGAAGGGAAC+TGG | 0.347871 | 7_3:-65035771 | Msa1116990:CDS |
| GAAAACTGAAAGAGTCCGTT+TGG | 0.392682 | 7_3:-65035670 | Msa1116990:CDS |
| AGGCGATTTGAAGGCTTCTT+CGG | 0.403502 | 7_3:+65036058 | None:intergenic |
| AGGAGGGAGAATCATACTTC+TGG | 0.421126 | 7_3:-65035880 | Msa1116990:CDS |
| CATACTTCTGGCATCGTCAT+TGG | 0.422253 | 7_3:-65035868 | Msa1116990:CDS |
| CGTTTGAAGCAAGGCGGAGG+AGG | 0.443432 | 7_3:-65035897 | Msa1116990:CDS |
| TGATGGGAAAACGGAGGAGA+TGG | 0.454882 | 7_3:-65035697 | Msa1116990:CDS |
| GATGTGAACAGGCGATTTGA+AGG | 0.457360 | 7_3:+65036049 | None:intergenic |
| CAAATCGCCTGTTCACATCC+TGG | 0.462961 | 7_3:-65036045 | Msa1116990:CDS |
| TACTGCGAATTGCGTGGCAC+CGG | 0.472414 | 7_3:-65035745 | Msa1116990:CDS |
| AAGAGTCCGTTTGGGAGACT+TGG | 0.474127 | 7_3:-65035661 | Msa1116990:intron |
| AATACGATCGAAGCTTTCAA+TGG | 0.476784 | 7_3:+65035971 | None:intergenic |
| CACATCCTGGTTAACTCAGC+TGG | 0.479319 | 7_3:-65036032 | Msa1116990:CDS |
| ATGGTTGTGTTTGCTATGGT+AGG | 0.480025 | 7_3:+65035990 | None:intergenic |
| GAGTTAACCAGGATGTGAAC+AGG | 0.487713 | 7_3:+65036038 | None:intergenic |
| GGTATGGTTGGCGTTGATCT+CGG | 0.494711 | 7_3:+65036151 | None:intergenic |
| ATCAGCATGGTTGGAGTTGG+AGG | 0.501568 | 7_3:+65036184 | None:intergenic |
| CGCTGACGTGTCTGATCCGG+AGG | 0.503122 | 7_3:-65036105 | Msa1116990:CDS |
| CGAAGGAGCTGAAGGGAACT+GGG | 0.506563 | 7_3:-65035770 | Msa1116990:CDS |
| GGCGTTGATCTCGGCGGCGA+CGG | 0.508524 | 7_3:+65036160 | None:intergenic |
| GGAATCAGCATGGTTGGAGT+TGG | 0.508679 | 7_3:+65036181 | None:intergenic |
| TTCAATGGTTGTGTTTGCTA+TGG | 0.509340 | 7_3:+65035986 | None:intergenic |
| AAAACTGAAAGAGTCCGTTT+GGG | 0.516294 | 7_3:-65035669 | Msa1116990:CDS |
| GATTCTGGCGAAGGAGCTGA+AGG | 0.530507 | 7_3:-65035778 | Msa1116990:CDS |
| GACGGTGATGGCTCGTAAAG+TGG | 0.531797 | 7_3:+65036130 | None:intergenic |
| AAGAGAGATTTCACACCCTC+CGG | 0.536752 | 7_3:+65036089 | None:intergenic |
| TCTGGCATCGTCATTGGTGG+CGG | 0.537435 | 7_3:-65035862 | Msa1116990:CDS |
| GGACGCCAGCTGAGTTAACC+AGG | 0.538889 | 7_3:+65036027 | None:intergenic |
| ACTTCTGGCATCGTCATTGG+TGG | 0.539355 | 7_3:-65035865 | Msa1116990:CDS |
| CACAGCTTCGAAGGCTGCTG+TGG | 0.540252 | 7_3:-65035814 | Msa1116990:CDS |
| GACCGAGTTGCAATTGTCAC+CGG | 0.540987 | 7_3:-65036281 | Msa1116990:CDS |
| ACTGCGAATTGCGTGGCACC+GGG | 0.546223 | 7_3:-65035744 | Msa1116990:CDS |
| ATCAGACACGTCAGCGCGGA+CGG | 0.551330 | 7_3:+65036112 | None:intergenic |
| GCGGCGTTGAAGATTTGCAT+GGG | 0.552959 | 7_3:-65035843 | Msa1116990:CDS |
| ATTGTCACCGGTTCCTCCCG+CGG | 0.553481 | 7_3:-65036269 | Msa1116990:CDS |
| GGCGACGGAATCAGCATGGT+TGG | 0.553601 | 7_3:+65036175 | None:intergenic |
| GGCTCGTAAAGTGGTATGGT+TGG | 0.554446 | 7_3:+65036139 | None:intergenic |
| GTCTCACCAAGTCTCCCAAA+CGG | 0.563177 | 7_3:+65035655 | None:intergenic |
| CACGTCAGCGCGGACGGTGA+TGG | 0.569838 | 7_3:+65036118 | None:intergenic |
| AATCGTTTGAAGCAAGGCGG+AGG | 0.570717 | 7_3:-65035900 | Msa1116990:CDS |
| CGATTTGAAGGCTTCTTCGG+CGG | 0.570868 | 7_3:+65036061 | None:intergenic |
| GCAACGAATCGTTTGAAGCA+AGG | 0.587927 | 7_3:-65035906 | Msa1116990:CDS |
| GGCGGCGTTGAAGATTTGCA+TGG | 0.588938 | 7_3:-65035844 | Msa1116990:CDS |
| GGGAGCTTACACAGCTTCGA+AGG | 0.590196 | 7_3:-65035823 | Msa1116990:CDS |
| GTTTGAAGCAAGGCGGAGGA+GGG | 0.592706 | 7_3:-65035896 | Msa1116990:CDS |
| TGGTTGTGTTTGCTATGGTA+GGG | 0.594003 | 7_3:+65035991 | None:intergenic |
| GATCTCTTTAACGATTCCGC+GGG | 0.595981 | 7_3:+65036253 | None:intergenic |
| TGATGGCTCGTAAAGTGGTA+TGG | 0.602152 | 7_3:+65036135 | None:intergenic |
| GCACTCCACCTTGCTTCACT+CGG | 0.602203 | 7_3:-65036230 | Msa1116990:CDS |
| AATGACGAAGATTCTGGCGA+AGG | 0.606255 | 7_3:-65035787 | Msa1116990:CDS |
| TGGGATTACTGCGAATTGCG+TGG | 0.619826 | 7_3:-65035751 | Msa1116990:CDS |
| CGATCTCTTTAACGATTCCG+CGG | 0.633807 | 7_3:+65036252 | None:intergenic |
| CGGCGGCGACGGAATCAGCA+TGG | 0.639400 | 7_3:+65036171 | None:intergenic |
| AACCGGTGACAATTGCAACT+CGG | 0.641340 | 7_3:+65036279 | None:intergenic |
| ATTGCAACTCGGTCTTGAAG+CGG | 0.659095 | 7_3:+65036290 | None:intergenic |
| TGGTAGGGTACTTCGCGTCG+AGG | 0.676823 | 7_3:+65036006 | None:intergenic |
| GCTGACGTGTCTGATCCGGA+GGG | 0.682659 | 7_3:-65036104 | Msa1116990:CDS |
| TTGCGCCGAGTGAAGCAAGG+TGG | 0.691051 | 7_3:+65036225 | None:intergenic |
| ATTCTGGCGAAGGAGCTGAA+GGG | 0.708814 | 7_3:-65035777 | Msa1116990:CDS |
| ATGGTTGGCGTTGATCTCGG+CGG | 0.719221 | 7_3:+65036154 | None:intergenic |
| ACGAATCGTTTGAAGCAAGG+CGG | 0.741110 | 7_3:-65035903 | Msa1116990:CDS |
| CCGGATCAGACACGTCAGCG+CGG | 0.777511 | 7_3:+65036108 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTTTTTTTTTTTTG+AGG | - | chr7_3:65036251-65036270 | Msa1116990:CDS | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTGA+GGG | - | chr7_3:65036252-65036271 | Msa1116990:CDS | 10.0% |
| !!! | TGATTTTTTTTTTTTTTTTG+AGG | - | chr7_3:65036251-65036270 | Msa1116990:CDS | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTGA+GGG | - | chr7_3:65036252-65036271 | Msa1116990:CDS | 10.0% |
| !! | ATTATGAACATAAACTTAAA+AGG | - | chr7_3:65035274-65035293 | Msa1116990:intron | 15.0% |
| !! | ATTATGAACATAAACTTAAA+AGG | - | chr7_3:65035274-65035293 | Msa1116990:intron | 15.0% |
| ! | AGCACTGTAACAATTATAAA+TGG | + | chr7_3:65035881-65035900 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTACGAAAGCTT+TGG | - | chr7_3:65036036-65036055 | Msa1116990:CDS | 25.0% |
| !!! | TTTGGAACTTTTTTTTGACT+TGG | - | chr7_3:65036054-65036073 | Msa1116990:CDS | 25.0% |
| ! | TGAAATTATGAAAGAAGCTT+TGG | - | chr7_3:65036095-65036114 | Msa1116990:CDS | 25.0% |
| ! | AGCACTGTAACAATTATAAA+TGG | + | chr7_3:65035881-65035900 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTACGAAAGCTT+TGG | - | chr7_3:65036036-65036055 | Msa1116990:CDS | 25.0% |
| !!! | TTTGGAACTTTTTTTTGACT+TGG | - | chr7_3:65036054-65036073 | Msa1116990:CDS | 25.0% |
| ! | TGAAATTATGAAAGAAGCTT+TGG | - | chr7_3:65036095-65036114 | Msa1116990:CDS | 25.0% |
| !!! | GATGTTTTTTGATGGGAAAA+CGG | - | chr7_3:65035519-65035538 | Msa1116990:intron | 30.0% |
| GGTCAAATTATTCGTGTTAA+TGG | - | chr7_3:65035651-65035670 | Msa1116990:intron | 30.0% | |
| CAAATTATTCGTGTTAATGG+TGG | - | chr7_3:65035654-65035673 | Msa1116990:intron | 30.0% | |
| ACACAATGCTCATTTATCAA+TGG | + | chr7_3:65035838-65035857 | None:intergenic | 30.0% | |
| TCAATATTAACCTGCTACAA+AGG | - | chr7_3:65035916-65035935 | Msa1116990:CDS | 30.0% | |
| !! | GTTTAATTTTCCTTTGTAGC+AGG | + | chr7_3:65035929-65035948 | None:intergenic | 30.0% |
| ! | TTAAACCCAATTGATGATCA+AGG | - | chr7_3:65035943-65035962 | Msa1116990:CDS | 30.0% |
| CTAAACCTTGATCATCAATT+GGG | + | chr7_3:65035951-65035970 | None:intergenic | 30.0% | |
| ACTAAACCTTGATCATCAAT+TGG | + | chr7_3:65035952-65035971 | None:intergenic | 30.0% | |
| ! | ATTGATGATCAAGGTTTAGT+AGG | - | chr7_3:65035952-65035971 | Msa1116990:CDS | 30.0% |
| TGTATGATCAGGATACATAA+TGG | + | chr7_3:65035988-65036007 | None:intergenic | 30.0% | |
| !!! | TTTTTGACTTGGTGAATCTT+TGG | - | chr7_3:65036065-65036084 | Msa1116990:CDS | 30.0% |
| AAATCACTAACATAAGCAGT+TGG | + | chr7_3:65036237-65036256 | None:intergenic | 30.0% | |
| AATCTTGACATGTCAATACT+AGG | - | chr7_3:65036276-65036295 | Msa1116990:CDS | 30.0% | |
| ATCTTGACATGTCAATACTA+GGG | - | chr7_3:65036277-65036296 | Msa1116990:CDS | 30.0% | |
| !!! | GATGTTTTTTGATGGGAAAA+CGG | - | chr7_3:65035519-65035538 | Msa1116990:intron | 30.0% |
| GGTCAAATTATTCGTGTTAA+TGG | - | chr7_3:65035651-65035670 | Msa1116990:intron | 30.0% | |
| CAAATTATTCGTGTTAATGG+TGG | - | chr7_3:65035654-65035673 | Msa1116990:intron | 30.0% | |
| ACACAATGCTCATTTATCAA+TGG | + | chr7_3:65035838-65035857 | None:intergenic | 30.0% | |
| TCAATATTAACCTGCTACAA+AGG | - | chr7_3:65035916-65035935 | Msa1116990:CDS | 30.0% | |
| !! | GTTTAATTTTCCTTTGTAGC+AGG | + | chr7_3:65035929-65035948 | None:intergenic | 30.0% |
| ! | TTAAACCCAATTGATGATCA+AGG | - | chr7_3:65035943-65035962 | Msa1116990:CDS | 30.0% |
| CTAAACCTTGATCATCAATT+GGG | + | chr7_3:65035951-65035970 | None:intergenic | 30.0% | |
| ACTAAACCTTGATCATCAAT+TGG | + | chr7_3:65035952-65035971 | None:intergenic | 30.0% | |
| ! | ATTGATGATCAAGGTTTAGT+AGG | - | chr7_3:65035952-65035971 | Msa1116990:CDS | 30.0% |
| TGTATGATCAGGATACATAA+TGG | + | chr7_3:65035988-65036007 | None:intergenic | 30.0% | |
| !!! | TTTTTGACTTGGTGAATCTT+TGG | - | chr7_3:65036065-65036084 | Msa1116990:CDS | 30.0% |
| AAATCACTAACATAAGCAGT+TGG | + | chr7_3:65036237-65036256 | None:intergenic | 30.0% | |
| AATCTTGACATGTCAATACT+AGG | - | chr7_3:65036276-65036295 | Msa1116990:CDS | 30.0% | |
| ATCTTGACATGTCAATACTA+GGG | - | chr7_3:65036277-65036296 | Msa1116990:CDS | 30.0% | |
| ! | TTCAATGGTTGTGTTTGCTA+TGG | + | chr7_3:65035242-65035261 | None:intergenic | 35.0% |
| AATACGATCGAAGCTTTCAA+TGG | + | chr7_3:65035257-65035276 | None:intergenic | 35.0% | |
| AAAACTGAAAGAGTCCGTTT+GGG | - | chr7_3:65035556-65035575 | Msa1116990:intron | 35.0% | |
| TAAGAACTCTTTCTGTGCAT+TGG | - | chr7_3:65035760-65035779 | Msa1116990:CDS | 35.0% | |
| ! | AAGTATAGCTCTGTATGATC+AGG | + | chr7_3:65035999-65036018 | None:intergenic | 35.0% |
| ! | TTCAATGGTTGTGTTTGCTA+TGG | + | chr7_3:65035242-65035261 | None:intergenic | 35.0% |
| AATACGATCGAAGCTTTCAA+TGG | + | chr7_3:65035257-65035276 | None:intergenic | 35.0% | |
| AAAACTGAAAGAGTCCGTTT+GGG | - | chr7_3:65035556-65035575 | Msa1116990:intron | 35.0% | |
| TAAGAACTCTTTCTGTGCAT+TGG | - | chr7_3:65035760-65035779 | Msa1116990:CDS | 35.0% | |
| ! | AAGTATAGCTCTGTATGATC+AGG | + | chr7_3:65035999-65036018 | None:intergenic | 35.0% |
| !! | TGGTTGTGTTTGCTATGGTA+GGG | + | chr7_3:65035237-65035256 | None:intergenic | 40.0% |
| !! | ATGGTTGTGTTTGCTATGGT+AGG | + | chr7_3:65035238-65035257 | None:intergenic | 40.0% |
| AAAAACATCTCCGTCGCAAT+CGG | + | chr7_3:65035508-65035527 | None:intergenic | 40.0% | |
| !!! | CGACGGAGATGTTTTTTGAT+GGG | - | chr7_3:65035512-65035531 | Msa1116990:intron | 40.0% |
| !!! | GTTTTTTGATGGGAAAACGG+AGG | - | chr7_3:65035522-65035541 | Msa1116990:intron | 40.0% |
| GAAAACTGAAAGAGTCCGTT+TGG | - | chr7_3:65035555-65035574 | Msa1116990:intron | 40.0% | |
| AAAGATGTTGCTCCTGTTGT+TGG | - | chr7_3:65035594-65035613 | Msa1116990:intron | 40.0% | |
| !!! | TGCTCCTGTTGTTGGTTTTT+TGG | - | chr7_3:65035602-65035621 | Msa1116990:intron | 40.0% |
| GTAGCCAAAAAACCAACAAC+AGG | + | chr7_3:65035609-65035628 | None:intergenic | 40.0% | |
| !! | GATGCTTCTGAATGGGTTAA+TGG | - | chr7_3:65035630-65035649 | Msa1116990:intron | 40.0% |
| !! | GTTACAGTGCTGATTGTTGT+AGG | - | chr7_3:65035890-65035909 | Msa1116990:CDS | 40.0% |
| !! | AAGCTTTGGAACTTCAAGAG+TGG | - | chr7_3:65036109-65036128 | Msa1116990:CDS | 40.0% |
| !! | TGGTTGTGTTTGCTATGGTA+GGG | + | chr7_3:65035237-65035256 | None:intergenic | 40.0% |
| !! | ATGGTTGTGTTTGCTATGGT+AGG | + | chr7_3:65035238-65035257 | None:intergenic | 40.0% |
| AAAAACATCTCCGTCGCAAT+CGG | + | chr7_3:65035508-65035527 | None:intergenic | 40.0% | |
| !!! | CGACGGAGATGTTTTTTGAT+GGG | - | chr7_3:65035512-65035531 | Msa1116990:intron | 40.0% |
| !!! | GTTTTTTGATGGGAAAACGG+AGG | - | chr7_3:65035522-65035541 | Msa1116990:intron | 40.0% |
| GAAAACTGAAAGAGTCCGTT+TGG | - | chr7_3:65035555-65035574 | Msa1116990:intron | 40.0% | |
| AAAGATGTTGCTCCTGTTGT+TGG | - | chr7_3:65035594-65035613 | Msa1116990:intron | 40.0% | |
| !!! | TGCTCCTGTTGTTGGTTTTT+TGG | - | chr7_3:65035602-65035621 | Msa1116990:intron | 40.0% |
| GTAGCCAAAAAACCAACAAC+AGG | + | chr7_3:65035609-65035628 | None:intergenic | 40.0% | |
| !! | GATGCTTCTGAATGGGTTAA+TGG | - | chr7_3:65035630-65035649 | Msa1116990:intron | 40.0% |
| !! | GTTACAGTGCTGATTGTTGT+AGG | - | chr7_3:65035890-65035909 | Msa1116990:CDS | 40.0% |
| !! | AAGCTTTGGAACTTCAAGAG+TGG | - | chr7_3:65036109-65036128 | Msa1116990:CDS | 40.0% |
| ATTGCAACTCGGTCTTGAAG+CGG | + | chr7_3:65034938-65034957 | None:intergenic | 45.0% | |
| AACCGGTGACAATTGCAACT+CGG | + | chr7_3:65034949-65034968 | None:intergenic | 45.0% | |
| GATCTCTTTAACGATTCCGC+GGG | + | chr7_3:65034975-65034994 | None:intergenic | 45.0% | |
| CGATCTCTTTAACGATTCCG+CGG | + | chr7_3:65034976-65034995 | None:intergenic | 45.0% | |
| TGATGGCTCGTAAAGTGGTA+TGG | + | chr7_3:65035093-65035112 | None:intergenic | 45.0% | |
| AAGAGAGATTTCACACCCTC+CGG | + | chr7_3:65035139-65035158 | None:intergenic | 45.0% | |
| AGGCGATTTGAAGGCTTCTT+CGG | + | chr7_3:65035170-65035189 | None:intergenic | 45.0% | |
| GATGTGAACAGGCGATTTGA+AGG | + | chr7_3:65035179-65035198 | None:intergenic | 45.0% | |
| GAGTTAACCAGGATGTGAAC+AGG | + | chr7_3:65035190-65035209 | None:intergenic | 45.0% | |
| ! | GCAACGAATCGTTTGAAGCA+AGG | - | chr7_3:65035319-65035338 | Msa1116990:intron | 45.0% |
| ! | ACGAATCGTTTGAAGCAAGG+CGG | - | chr7_3:65035322-65035341 | Msa1116990:intron | 45.0% |
| AGGAGGGAGAATCATACTTC+TGG | - | chr7_3:65035345-65035364 | Msa1116990:intron | 45.0% | |
| CATACTTCTGGCATCGTCAT+TGG | - | chr7_3:65035357-65035376 | Msa1116990:intron | 45.0% | |
| GGAAGCAATGACGAAGATTC+TGG | - | chr7_3:65035432-65035451 | Msa1116990:intron | 45.0% | |
| AATGACGAAGATTCTGGCGA+AGG | - | chr7_3:65035438-65035457 | Msa1116990:intron | 45.0% | |
| !!! | GCGACGGAGATGTTTTTTGA+TGG | - | chr7_3:65035511-65035530 | Msa1116990:intron | 45.0% |
| TGGCTACTGATGCTTCTGAA+TGG | - | chr7_3:65035622-65035641 | Msa1116990:intron | 45.0% | |
| GGCTACTGATGCTTCTGAAT+GGG | - | chr7_3:65035623-65035642 | Msa1116990:intron | 45.0% | |
| ATTGCAACTCGGTCTTGAAG+CGG | + | chr7_3:65034938-65034957 | None:intergenic | 45.0% | |
| AACCGGTGACAATTGCAACT+CGG | + | chr7_3:65034949-65034968 | None:intergenic | 45.0% | |
| GATCTCTTTAACGATTCCGC+GGG | + | chr7_3:65034975-65034994 | None:intergenic | 45.0% | |
| CGATCTCTTTAACGATTCCG+CGG | + | chr7_3:65034976-65034995 | None:intergenic | 45.0% | |
| TGATGGCTCGTAAAGTGGTA+TGG | + | chr7_3:65035093-65035112 | None:intergenic | 45.0% | |
| AAGAGAGATTTCACACCCTC+CGG | + | chr7_3:65035139-65035158 | None:intergenic | 45.0% | |
| AGGCGATTTGAAGGCTTCTT+CGG | + | chr7_3:65035170-65035189 | None:intergenic | 45.0% | |
| GATGTGAACAGGCGATTTGA+AGG | + | chr7_3:65035179-65035198 | None:intergenic | 45.0% | |
| GAGTTAACCAGGATGTGAAC+AGG | + | chr7_3:65035190-65035209 | None:intergenic | 45.0% | |
| ! | GCAACGAATCGTTTGAAGCA+AGG | - | chr7_3:65035319-65035338 | Msa1116990:intron | 45.0% |
| ! | ACGAATCGTTTGAAGCAAGG+CGG | - | chr7_3:65035322-65035341 | Msa1116990:intron | 45.0% |
| AGGAGGGAGAATCATACTTC+TGG | - | chr7_3:65035345-65035364 | Msa1116990:intron | 45.0% | |
| CATACTTCTGGCATCGTCAT+TGG | - | chr7_3:65035357-65035376 | Msa1116990:intron | 45.0% | |
| GGAAGCAATGACGAAGATTC+TGG | - | chr7_3:65035432-65035451 | Msa1116990:intron | 45.0% | |
| AATGACGAAGATTCTGGCGA+AGG | - | chr7_3:65035438-65035457 | Msa1116990:intron | 45.0% | |
| !!! | GCGACGGAGATGTTTTTTGA+TGG | - | chr7_3:65035511-65035530 | Msa1116990:intron | 45.0% |
| TGGCTACTGATGCTTCTGAA+TGG | - | chr7_3:65035622-65035641 | Msa1116990:intron | 45.0% | |
| GGCTACTGATGCTTCTGAAT+GGG | - | chr7_3:65035623-65035642 | Msa1116990:intron | 45.0% | |
| GACCGAGTTGCAATTGTCAC+CGG | - | chr7_3:65034944-65034963 | Msa1116990:intron | 50.0% | |
| ATCAGCATGGTTGGAGTTGG+AGG | + | chr7_3:65035044-65035063 | None:intergenic | 50.0% | |
| GGAATCAGCATGGTTGGAGT+TGG | + | chr7_3:65035047-65035066 | None:intergenic | 50.0% | |
| !! | GGTATGGTTGGCGTTGATCT+CGG | + | chr7_3:65035077-65035096 | None:intergenic | 50.0% |
| GGCTCGTAAAGTGGTATGGT+TGG | + | chr7_3:65035089-65035108 | None:intergenic | 50.0% | |
| CGATTTGAAGGCTTCTTCGG+CGG | + | chr7_3:65035167-65035186 | None:intergenic | 50.0% | |
| CAAATCGCCTGTTCACATCC+TGG | - | chr7_3:65035180-65035199 | Msa1116990:intron | 50.0% | |
| CACATCCTGGTTAACTCAGC+TGG | - | chr7_3:65035193-65035212 | Msa1116990:intron | 50.0% | |
| ! | AATCGTTTGAAGCAAGGCGG+AGG | - | chr7_3:65035325-65035344 | Msa1116990:intron | 50.0% |
| ACTTCTGGCATCGTCATTGG+TGG | - | chr7_3:65035360-65035379 | Msa1116990:intron | 50.0% | |
| ! | GCGGCGTTGAAGATTTGCAT+GGG | - | chr7_3:65035382-65035401 | Msa1116990:intron | 50.0% |
| ATTCTGGCGAAGGAGCTGAA+GGG | - | chr7_3:65035448-65035467 | Msa1116990:intron | 50.0% | |
| TGGGATTACTGCGAATTGCG+TGG | - | chr7_3:65035474-65035493 | Msa1116990:intron | 50.0% | |
| TGATGGGAAAACGGAGGAGA+TGG | - | chr7_3:65035528-65035547 | Msa1116990:intron | 50.0% | |
| AAGAGTCCGTTTGGGAGACT+TGG | - | chr7_3:65035564-65035583 | Msa1116990:intron | 50.0% | |
| GTCTCACCAAGTCTCCCAAA+CGG | + | chr7_3:65035573-65035592 | None:intergenic | 50.0% | |
| GACCGAGTTGCAATTGTCAC+CGG | - | chr7_3:65034944-65034963 | Msa1116990:intron | 50.0% | |
| ATCAGCATGGTTGGAGTTGG+AGG | + | chr7_3:65035044-65035063 | None:intergenic | 50.0% | |
| GGAATCAGCATGGTTGGAGT+TGG | + | chr7_3:65035047-65035066 | None:intergenic | 50.0% | |
| !! | GGTATGGTTGGCGTTGATCT+CGG | + | chr7_3:65035077-65035096 | None:intergenic | 50.0% |
| GGCTCGTAAAGTGGTATGGT+TGG | + | chr7_3:65035089-65035108 | None:intergenic | 50.0% | |
| CGATTTGAAGGCTTCTTCGG+CGG | + | chr7_3:65035167-65035186 | None:intergenic | 50.0% | |
| CAAATCGCCTGTTCACATCC+TGG | - | chr7_3:65035180-65035199 | Msa1116990:intron | 50.0% | |
| CACATCCTGGTTAACTCAGC+TGG | - | chr7_3:65035193-65035212 | Msa1116990:intron | 50.0% | |
| ! | AATCGTTTGAAGCAAGGCGG+AGG | - | chr7_3:65035325-65035344 | Msa1116990:intron | 50.0% |
| ACTTCTGGCATCGTCATTGG+TGG | - | chr7_3:65035360-65035379 | Msa1116990:intron | 50.0% | |
| ! | GCGGCGTTGAAGATTTGCAT+GGG | - | chr7_3:65035382-65035401 | Msa1116990:intron | 50.0% |
| ATTCTGGCGAAGGAGCTGAA+GGG | - | chr7_3:65035448-65035467 | Msa1116990:intron | 50.0% | |
| TGGGATTACTGCGAATTGCG+TGG | - | chr7_3:65035474-65035493 | Msa1116990:intron | 50.0% | |
| TGATGGGAAAACGGAGGAGA+TGG | - | chr7_3:65035528-65035547 | Msa1116990:intron | 50.0% | |
| AAGAGTCCGTTTGGGAGACT+TGG | - | chr7_3:65035564-65035583 | Msa1116990:intron | 50.0% | |
| GTCTCACCAAGTCTCCCAAA+CGG | + | chr7_3:65035573-65035592 | None:intergenic | 50.0% | |
| CTCTTTAACGATTCCGCGGG+AGG | + | chr7_3:65034972-65034991 | None:intergenic | 55.0% | |
| GCACTCCACCTTGCTTCACT+CGG | - | chr7_3:65034995-65035014 | Msa1116990:intron | 55.0% | |
| !! | ATGGTTGGCGTTGATCTCGG+CGG | + | chr7_3:65035074-65035093 | None:intergenic | 55.0% |
| ! | GACGGTGATGGCTCGTAAAG+TGG | + | chr7_3:65035098-65035117 | None:intergenic | 55.0% |
| ! | GTTTGAAGCAAGGCGGAGGA+GGG | - | chr7_3:65035329-65035348 | Msa1116990:intron | 55.0% |
| TCTGGCATCGTCATTGGTGG+CGG | - | chr7_3:65035363-65035382 | Msa1116990:intron | 55.0% | |
| ! | GGCGGCGTTGAAGATTTGCA+TGG | - | chr7_3:65035381-65035400 | Msa1116990:intron | 55.0% |
| GGGAGCTTACACAGCTTCGA+AGG | - | chr7_3:65035402-65035421 | Msa1116990:intron | 55.0% | |
| GATTCTGGCGAAGGAGCTGA+AGG | - | chr7_3:65035447-65035466 | Msa1116990:intron | 55.0% | |
| CGAAGGAGCTGAAGGGAACT+GGG | - | chr7_3:65035455-65035474 | Msa1116990:intron | 55.0% | |
| TACTGCGAATTGCGTGGCAC+CGG | - | chr7_3:65035480-65035499 | Msa1116990:intron | 55.0% | |
| CTCTTTAACGATTCCGCGGG+AGG | + | chr7_3:65034972-65034991 | None:intergenic | 55.0% | |
| GCACTCCACCTTGCTTCACT+CGG | - | chr7_3:65034995-65035014 | Msa1116990:intron | 55.0% | |
| !! | ATGGTTGGCGTTGATCTCGG+CGG | + | chr7_3:65035074-65035093 | None:intergenic | 55.0% |
| ! | GACGGTGATGGCTCGTAAAG+TGG | + | chr7_3:65035098-65035117 | None:intergenic | 55.0% |
| ! | GTTTGAAGCAAGGCGGAGGA+GGG | - | chr7_3:65035329-65035348 | Msa1116990:intron | 55.0% |
| TCTGGCATCGTCATTGGTGG+CGG | - | chr7_3:65035363-65035382 | Msa1116990:intron | 55.0% | |
| ! | GGCGGCGTTGAAGATTTGCA+TGG | - | chr7_3:65035381-65035400 | Msa1116990:intron | 55.0% |
| GGGAGCTTACACAGCTTCGA+AGG | - | chr7_3:65035402-65035421 | Msa1116990:intron | 55.0% | |
| GATTCTGGCGAAGGAGCTGA+AGG | - | chr7_3:65035447-65035466 | Msa1116990:intron | 55.0% | |
| CGAAGGAGCTGAAGGGAACT+GGG | - | chr7_3:65035455-65035474 | Msa1116990:intron | 55.0% | |
| TACTGCGAATTGCGTGGCAC+CGG | - | chr7_3:65035480-65035499 | Msa1116990:intron | 55.0% | |
| !! | ATTGTCACCGGTTCCTCCCG+CGG | - | chr7_3:65034956-65034975 | Msa1116990:intron | 60.0% |
| AACGATTCCGCGGGAGGAAC+CGG | + | chr7_3:65034966-65034985 | None:intergenic | 60.0% | |
| TTGCGCCGAGTGAAGCAAGG+TGG | + | chr7_3:65035003-65035022 | None:intergenic | 60.0% | |
| GTCTTGCGCCGAGTGAAGCA+AGG | + | chr7_3:65035006-65035025 | None:intergenic | 60.0% | |
| GGCGACGGAATCAGCATGGT+TGG | + | chr7_3:65035053-65035072 | None:intergenic | 60.0% | |
| ATCAGACACGTCAGCGCGGA+CGG | + | chr7_3:65035116-65035135 | None:intergenic | 60.0% | |
| GCTGACGTGTCTGATCCGGA+GGG | - | chr7_3:65035121-65035140 | Msa1116990:intron | 60.0% | |
| GGACGCCAGCTGAGTTAACC+AGG | + | chr7_3:65035201-65035220 | None:intergenic | 60.0% | |
| ! | TGGTAGGGTACTTCGCGTCG+AGG | + | chr7_3:65035222-65035241 | None:intergenic | 60.0% |
| !! | AGGAGCGTTTCTCTGCGCGA+AGG | - | chr7_3:65035294-65035313 | Msa1116990:intron | 60.0% |
| ! | CGTTTGAAGCAAGGCGGAGG+AGG | - | chr7_3:65035328-65035347 | Msa1116990:intron | 60.0% |
| CACAGCTTCGAAGGCTGCTG+TGG | - | chr7_3:65035411-65035430 | Msa1116990:intron | 60.0% | |
| GCGAAGGAGCTGAAGGGAAC+TGG | - | chr7_3:65035454-65035473 | Msa1116990:intron | 60.0% | |
| ACTGCGAATTGCGTGGCACC+GGG | - | chr7_3:65035481-65035500 | Msa1116990:intron | 60.0% | |
| ATCTCCGTCGCAATCGGTCC+CGG | + | chr7_3:65035502-65035521 | None:intergenic | 60.0% | |
| !! | ATTGTCACCGGTTCCTCCCG+CGG | - | chr7_3:65034956-65034975 | Msa1116990:intron | 60.0% |
| AACGATTCCGCGGGAGGAAC+CGG | + | chr7_3:65034966-65034985 | None:intergenic | 60.0% | |
| TTGCGCCGAGTGAAGCAAGG+TGG | + | chr7_3:65035003-65035022 | None:intergenic | 60.0% | |
| GTCTTGCGCCGAGTGAAGCA+AGG | + | chr7_3:65035006-65035025 | None:intergenic | 60.0% | |
| GGCGACGGAATCAGCATGGT+TGG | + | chr7_3:65035053-65035072 | None:intergenic | 60.0% | |
| ATCAGACACGTCAGCGCGGA+CGG | + | chr7_3:65035116-65035135 | None:intergenic | 60.0% | |
| GCTGACGTGTCTGATCCGGA+GGG | - | chr7_3:65035121-65035140 | Msa1116990:intron | 60.0% | |
| GGACGCCAGCTGAGTTAACC+AGG | + | chr7_3:65035201-65035220 | None:intergenic | 60.0% | |
| ! | TGGTAGGGTACTTCGCGTCG+AGG | + | chr7_3:65035222-65035241 | None:intergenic | 60.0% |
| !! | AGGAGCGTTTCTCTGCGCGA+AGG | - | chr7_3:65035294-65035313 | Msa1116990:intron | 60.0% |
| ! | CGTTTGAAGCAAGGCGGAGG+AGG | - | chr7_3:65035328-65035347 | Msa1116990:intron | 60.0% |
| CACAGCTTCGAAGGCTGCTG+TGG | - | chr7_3:65035411-65035430 | Msa1116990:intron | 60.0% | |
| GCGAAGGAGCTGAAGGGAAC+TGG | - | chr7_3:65035454-65035473 | Msa1116990:intron | 60.0% | |
| ACTGCGAATTGCGTGGCACC+GGG | - | chr7_3:65035481-65035500 | Msa1116990:intron | 60.0% | |
| ATCTCCGTCGCAATCGGTCC+CGG | + | chr7_3:65035502-65035521 | None:intergenic | 60.0% | |
| CCGGATCAGACACGTCAGCG+CGG | + | chr7_3:65035120-65035139 | None:intergenic | 65.0% | |
| ! | CCGCGCTGACGTGTCTGATC+CGG | - | chr7_3:65035117-65035136 | Msa1116990:intron | 65.0% |
| CGCTGACGTGTCTGATCCGG+AGG | - | chr7_3:65035120-65035139 | Msa1116990:intron | 65.0% | |
| CCGGATCAGACACGTCAGCG+CGG | + | chr7_3:65035120-65035139 | None:intergenic | 65.0% | |
| ! | CCGCGCTGACGTGTCTGATC+CGG | - | chr7_3:65035117-65035136 | Msa1116990:intron | 65.0% |
| CGCTGACGTGTCTGATCCGG+AGG | - | chr7_3:65035120-65035139 | Msa1116990:intron | 65.0% | |
| CGGCGGCGACGGAATCAGCA+TGG | + | chr7_3:65035057-65035076 | None:intergenic | 70.0% | |
| !! | GGCGTTGATCTCGGCGGCGA+CGG | + | chr7_3:65035068-65035087 | None:intergenic | 70.0% |
| CACGTCAGCGCGGACGGTGA+TGG | + | chr7_3:65035110-65035129 | None:intergenic | 70.0% | |
| ! | GGCACCGGGACCGATTGCGA+CGG | - | chr7_3:65035495-65035514 | Msa1116990:intron | 70.0% |
| CGGCGGCGACGGAATCAGCA+TGG | + | chr7_3:65035057-65035076 | None:intergenic | 70.0% | |
| !! | GGCGTTGATCTCGGCGGCGA+CGG | + | chr7_3:65035068-65035087 | None:intergenic | 70.0% |
| CACGTCAGCGCGGACGGTGA+TGG | + | chr7_3:65035110-65035129 | None:intergenic | 70.0% | |
| ! | GGCACCGGGACCGATTGCGA+CGG | - | chr7_3:65035495-65035514 | Msa1116990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 65034923 | 65036324 | 65034923 | ID=Msa1116990;Name=Msa1116990 |
| chr7_3 | mRNA | 65034923 | 65036324 | 65034923 | ID=Msa1116990-mRNA-1;Parent=Msa1116990;Name=Msa1116990-mRNA-1;_AED=0.09;_eAED=0.12;_QI=0|0|0|0.5|1|1|2|0|229 |
| chr7_3 | exon | 65035662 | 65036324 | 65035662 | ID=Msa1116990-mRNA-1:exon:15446;Parent=Msa1116990-mRNA-1 |
| chr7_3 | exon | 65034923 | 65034949 | 65034923 | ID=Msa1116990-mRNA-1:exon:15445;Parent=Msa1116990-mRNA-1 |
| chr7_3 | CDS | 65035662 | 65036324 | 65035662 | ID=Msa1116990-mRNA-1:cds;Parent=Msa1116990-mRNA-1 |
| chr7_3 | CDS | 65034923 | 65034949 | 65034923 | ID=Msa1116990-mRNA-1:cds;Parent=Msa1116990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
