AlfalfaGEDB | Msa1122040

M. sativa cultivar zhongmu-4 / Msa1122040

KEGG: K10728
GO: GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112
PFAM: PF00533.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122040	XP_039689705.1	64.372	494	142	7	3	489	5	471	0.0	612

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122040	G7KSM4	73.295	528	105	8	2	519	4	505	0.0	742

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0188830	Msa1122040	0.805136	1.544103e-49	-8.615850e-47
Msa0220740	Msa1122040	0.800237	1.583544e-48	-8.615850e-47
Msa0697060	Msa1122040	0.808296	3.321224e-50	-8.615850e-47
Msa0735170	Msa1122040	0.810043	1.402169e-50	-8.615850e-47
Msa0762360	Msa1122040	0.810979	8.805102e-51	-8.615850e-47
Msa1014540	Msa1122040	0.800161	1.640863e-48	-8.615850e-47
Msa1030970	Msa1122040	0.800169	1.634642e-48	-8.615850e-47
Msa1075220	Msa1122040	-0.814466	1.518989e-51	-8.615850e-47
Msa1082500	Msa1122040	0.804612	1.987370e-49	-8.615850e-47
Msa1122040	Msa1159750	0.827061	1.925612e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122040	MtrunA17_Chr7g0257121	87.255	204	25	1	2	204	4	207	3.93e-126	371
Msa1122040	MtrunA17_Chr7g0257131	73.507	268	60	5	261	519	1	266	7.81e-124	373
Msa1122040	MtrunA17_Chr1g0159631	69.145	269	66	6	228	489	2	260	6.67e-111	352
Msa1122040	MtrunA17_Chr1g0159641	69.608	204	61	1	3	206	5	207	4.24e-96	295
Msa1122040	MtrunA17_Chr7g0257141	73.469	49	13	0	443	491	4	52	1.88e-17	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122040	AT1G77320.1	44.358	514	246	6	2	510	4	482	5.55e-130	406
Msa1122040	AT1G77320.3	44.358	514	246	6	2	510	4	482	1.60e-129	405
Msa1122040	AT1G77320.2	44.422	493	217	8	2	489	4	444	3.37e-121	382

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Find 151 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAATTAATGACTGAAA+TGG	0.336089	7_3:+72239831	Msa1122040:CDS
AACCAATAGTTACTTATGAA+TGG	0.439724	7_3:+72240616	Msa1122040:CDS
AACCATTCATAAGTAACTAT+TGG	0.328810	7_3:-72240618	None:intergenic
AACGGCTGTCAAGTTCATAT+CGG	0.528504	7_3:+72237566	Msa1122040:CDS
AACTAGCTTATTTGAATCTG+CGG	0.509713	7_3:-72242330	None:intergenic
AAGATGTCGAAGTTATTTGA+CGG	0.546558	7_3:+72237470	Msa1122040:exon
AAGGCAGTGCAATAGAAGAC+AGG	0.583532	7_3:-72241730	None:intergenic
AAGGGATAAGCTAATTGGTA+TGG	0.558062	7_3:+72242571	Msa1122040:CDS
AAGTAACTATTGGTTTCTTC+AGG	0.331549	7_3:-72240608	None:intergenic
AAGTTGACACACATAGTAGT+TGG	0.513618	7_3:+72242635	Msa1122040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGTCGAAGTTATTTGA+CGG	+	chr7_3:72237470-72237489	Msa1122040:exon	30.0%
CTTAACTAACAATGCATACA+CGG	-	chr7_3:72237874-72237893	None:intergenic	30.0%
CTTAACTAACAATGCATACA+CGG	-	chr7_3:72237874-72237893	None:intergenic	30.0%
CTTAACTAACAATGCATACA+CGG	-	chr7_3:72237874-72237893	None:intergenic	30.0%
CTTAACTAACAATGCATACA+CGG	-	chr7_3:72237874-72237893	None:intergenic	30.0%
CTTAACTAACAATGCATACA+CGG	-	chr7_3:72237874-72237893	None:intergenic	30.0%
CTTAACTAACAATGCATACA+CGG	-	chr7_3:72237874-72237893	None:intergenic	30.0%
CTTTAAATGTGTCTGTATCA+TGG	-	chr7_3:72239162-72239181	None:intergenic	30.0%
ATGTAACTGCACATGTATAT+AGG	-	chr7_3:72239329-72239348	None:intergenic	30.0%
AAAAAGCAACTTGCGAATAT+TGG	-	chr7_3:72239560-72239579	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	72237459	72244465	72237459	ID=Msa1122040;Name=Msa1122040
chr7_3	mRNA	72237459	72244465	72237459	ID=Msa1122040-mRNA-1;Parent=Msa1122040;Name=Msa1122040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=14\|0.76\|0.64\|0.92\|1\|1\|14\|207\|626
chr7_3	exon	72237459	72237646	72237459	ID=Msa1122040-mRNA-1:exon:18696;Parent=Msa1122040-mRNA-1
chr7_3	exon	72237743	72237785	72237743	ID=Msa1122040-mRNA-1:exon:18697;Parent=Msa1122040-mRNA-1
chr7_3	exon	72239409	72239530	72239409	ID=Msa1122040-mRNA-1:exon:18698;Parent=Msa1122040-mRNA-1
chr7_3	exon	72239823	72239930	72239823	ID=Msa1122040-mRNA-1:exon:18699;Parent=Msa1122040-mRNA-1
chr7_3	exon	72240594	72240738	72240594	ID=Msa1122040-mRNA-1:exon:18700;Parent=Msa1122040-mRNA-1
chr7_3	exon	72241384	72241448	72241384	ID=Msa1122040-mRNA-1:exon:18701;Parent=Msa1122040-mRNA-1
chr7_3	exon	72241727	72241792	72241727	ID=Msa1122040-mRNA-1:exon:18702;Parent=Msa1122040-mRNA-1
chr7_3	exon	72241886	72242012	72241886	ID=Msa1122040-mRNA-1:exon:18703;Parent=Msa1122040-mRNA-1
chr7_3	exon	72242198	72242672	72242198	ID=Msa1122040-mRNA-1:exon:18704;Parent=Msa1122040-mRNA-1
chr7_3	exon	72242896	72243038	72242896	ID=Msa1122040-mRNA-1:exon:18705;Parent=Msa1122040-mRNA-1
chr7_3	exon	72243178	72243278	72243178	ID=Msa1122040-mRNA-1:exon:18706;Parent=Msa1122040-mRNA-1
chr7_3	exon	72243376	72243439	72243376	ID=Msa1122040-mRNA-1:exon:18707;Parent=Msa1122040-mRNA-1
chr7_3	exon	72243549	72243639	72243549	ID=Msa1122040-mRNA-1:exon:18708;Parent=Msa1122040-mRNA-1
chr7_3	exon	72244102	72244465	72244102	ID=Msa1122040-mRNA-1:exon:18709;Parent=Msa1122040-mRNA-1
chr7_3	five_prime_UTR	72237459	72237472	72237459	ID=Msa1122040-mRNA-1:five_prime_utr;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72237473	72237646	72237473	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72237743	72237785	72237743	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72239409	72239530	72239409	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72239823	72239930	72239823	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72240594	72240738	72240594	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72241384	72241448	72241384	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72241727	72241792	72241727	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72241886	72242012	72241886	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72242198	72242672	72242198	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72242896	72243038	72242896	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72243178	72243278	72243178	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72243376	72243439	72243376	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72243549	72243639	72243549	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	CDS	72244102	72244258	72244102	ID=Msa1122040-mRNA-1:cds;Parent=Msa1122040-mRNA-1
chr7_3	three_prime_UTR	72244259	72244465	72244259	ID=Msa1122040-mRNA-1:three_prime_utr;Parent=Msa1122040-mRNA-1

Gene Sequence

>Msa1122040

ATGTCGAAGTTATTTGACGGGTTTAACGTTTTCATATCGCGCCACTTATTTCCACCTGGTGAATTTGATGCTGTTCACAAGGTCGTTGAAGAGAACGGCTGTCAAGTTCATATCGGATTTGATCTTTCCCGCAACGGCGAAAATGATTATCACATCATTTCTTGCCGTCAACACTATAAATTTAAAGATCTAAAATCCAAAGGCTGCAAGATGATTGGTTATAGATGTGTTCTTCAATGTGCTAAAGAAGGAAGGCCTCCCCCTACACAAACCTTCACTTGCTGCTTAACTATGGAGGCTGTCAAAATACTCGCATGTGGCTTTGATGCAGATCAGATGGTTAAGATAAATGAATTAATGACTGAAATGGGGGGAGCTCTACACACTACACCGTCATCAGATTTAAATTCTGTCATTGTGAAAAATGTTTTGGCTCCAGAGTACAAGTGGACTTTGAGTGACCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCAAGTTGTTCCACAAGAGTCATATAAGGTTCTTCCGTTCTCTGGGTTAAAGATCTGTGTGACTGGAATCCAAGCAGGCGGCAAAATTGAAGTTCAAATTATATCTGTAGATTCTATGTTAGTGAACGTTGATTTTAAACTGTGTCCTGTCTTCTATTGCACTGCCTTAGGGATTAGTATCCCTTATGTACTTACAATCAGTGAAAAATTGGTGAATATTTGTGTTCTTGACTGTTCTTACGCTGCTGAAGGTGATAAGTATAAGATGGCAAAACATTGGGGCCATATTAGTATTGTGACAATGACATGGTTTGATGAATCTATTGCTCAAAGAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGAGTGGATCTTTATCTTCACGTAAGGTGACTAGGAACTCAACAGCGCAACATAGTCAGGAAAAGGATATTGGGATAATGCAATCCGGTTCATCCTCAAGAGCCGCAGATTCAAATAAGCTAGTTGATTGCGCCAAGTCTTTAAATGAAGATCCAGTCCCAGATGCTACACAGTCAAAAGATCCAGTCCCCGATGTTAAAGAGGCAGATGCTGAAGCACCTCCATTAAAGACCAGCAAGGAATTGAACTTTGATAGGGTTGTGGCCAATGATTCTGAATCGGACAACAATGACCAGTATTTAGCAGACTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAAGGGATAAGCTAATTGGTATGGTGCGTAAAGGTGGGGGCTCCGAATGCTTGTCTTTAAATGATAAGTTGACACACATAGTAGTTGGGAAGCCGACAGAAATGGAAAGGTGGGATATAGTGAGAACTGTTGGTCAAGGTGTCAATTACGCTGTTAAAACCTCATGGCTTGAGGACTGTGACCGCGAAAAAAAACGAGTCCCTGCCCTACAAAAGTACAGTGCATATGATCTTGTTTTCCCTAAAGGTAACTTGGACACTACTCAAGACCGAGAGGCAAAGAACAATGTAGATACTGAAGTTGAAAATGATGGTGTTGACGTTGCTGCTTTAATTCATACCCTAGTGGACGGATGTGATATGTTCGCACGGAAGAGATTGGATGAGATAAGTGTTTCCTGTCGTGATCAAGTCGTTGTGGAAGACAATCTAAATCCACCTACTCCCTGGGGTCCAGATCCTCATCCTGGCGGTCATTGGCGGAGATGGATAGAAATGAAAGAGGATGCTGAGACTTCTCGAGATCGAAGAGCGGGGACCTATGCAGCTTCCAGTGAATCAGATCCAGAATCTGAAAGAGTTACATGGTTATCTGATCATTCTGGAAGGGATGCGCTTCTAGAGAGGATTCAAAATCAAAATCAAGGTAACCAGCAGTGA

Protein sequence

>Msa1122040

MSKLFDGFNVFISRHLFPPGEFDAVHKVVEENGCQVHIGFDLSRNGENDYHIISCRQHYKFKDLKSKGCKMIGYRCVLQCAKEGRPPPTQTFTCCLTMEAVKILACGFDADQMVKINELMTEMGGALHTTPSSDLNSVIVKNVLAPEYKWTLSDLKKPIVTYEWLKQCSDEHQVVPQESYKVLPFSGLKICVTGIQAGGKIEVQIISVDSMLVNVDFKLCPVFYCTALGISIPYVLTISEKLVNICVLDCSYAAEGDKYKMAKHWGHISIVTMTWFDESIAQRACLNEESYPVQSGSLSSRKVTRNSTAQHSQEKDIGIMQSGSSSRAADSNKLVDCAKSLNEDPVPDATQSKDPVPDVKEADAEAPPLKTSKELNFDRVVANDSESDNNDQYLADCRISLVGFEASERDKLIGMVRKGGGSECLSLNDKLTHIVVGKPTEMERWDIVRTVGQGVNYAVKTSWLEDCDREKKRVPALQKYSAYDLVFPKGNLDTTQDREAKNNVDTEVENDGVDVAALIHTLVDGCDMFARKRLDEISVSCRDQVVVEDNLNPPTPWGPDPHPGGHWRRWIEMKEDAETSRDRRAGTYAASSESDPESERVTWLSDHSGRDALLERIQNQNQGNQQ*