AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0762360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762360 MtrunA17_Chr5g0412721 84.466 721 105 3 1 720 1 715 0.0 1233
Msa0762360 MtrunA17_Chr5g0412921 86.509 719 83 3 1 719 1 705 0.0 1216
Msa0762360 MtrunA17_Chr5g0445741 85.000 720 104 2 1 720 11 726 0.0 1181
Msa0762360 MtrunA17_Chr3g0101481 63.866 714 239 5 9 720 24 720 0.0 911
Msa0762360 MtrunA17_Chr3g0101471 60.571 525 202 1 196 720 7 526 0.0 647
Msa0762360 MtrunA17_Chr3g0101441 62.311 528 192 2 195 720 6 528 0.0 643
Msa0762360 MtrunA17_Chr3g0101461 61.174 528 198 2 195 720 6 528 0.0 632
Msa0762360 MtrunA17_Chr5g0445691 79.576 377 77 0 1 377 11 387 0.0 605
Msa0762360 MtrunA17_Chr5g0445671 86.866 335 44 0 386 720 1 335 0.0 598
Msa0762360 MtrunA17_Chr1g0183191 43.854 602 310 6 125 719 158 738 2.42e-160 504
Msa0762360 MtrunA17_Chr7g0262191 49.098 499 247 2 224 719 240 734 3.45e-157 496
Msa0762360 MtrunA17_Chr8g0337121 44.961 516 279 3 209 720 209 723 1.48e-134 435
Msa0762360 MtrunA17_Chr8g0337191 44.574 516 281 3 209 720 189 703 6.31e-133 430
Msa0762360 MtrunA17_Chr8g0376961 37.816 632 327 13 113 719 93 683 7.45e-128 416
Msa0762360 MtrunA17_Chr1g0202221 36.610 590 344 8 162 747 171 734 2.53e-118 389
Msa0762360 MtrunA17_Chr6g0463131 37.201 586 336 7 168 747 177 736 1.16e-114 380
Msa0762360 MtrunA17_Chr6g0463141 37.652 494 306 2 228 720 223 715 1.74e-112 374
Msa0762360 MtrunA17_Chr6g0463181 34.312 647 379 13 110 747 113 722 2.46e-111 370
Msa0762360 MtrunA17_Chr6g0463401 35.169 563 335 7 168 720 182 724 3.28e-111 358
Msa0762360 MtrunA17_Chr3g0085281 36.511 619 333 14 125 720 108 689 6.38e-111 369
Msa0762360 MtrunA17_Chr6g0463151 36.092 568 336 6 184 747 9 553 1.53e-108 360
Msa0762360 MtrunA17_Chr8g0341751 38.536 519 316 3 205 720 2 520 6.79e-108 358
Msa0762360 MtrunA17_Chr6g0484361 38.247 502 304 4 229 724 206 707 1.57e-107 348
Msa0762360 MtrunA17_Chr6g0471281 38.095 504 306 3 218 718 215 715 3.90e-107 358
Msa0762360 MtrunA17_Chr8g0341761 35.826 575 345 6 148 720 140 692 7.40e-106 355
Msa0762360 MtrunA17_Chr6g0472531 36.347 531 328 4 218 747 165 686 1.05e-105 354
Msa0762360 MtrunA17_Chr6g0463121 37.016 516 315 4 213 720 203 716 1.69e-105 354
Msa0762360 MtrunA17_Chr8g0353781 35.826 575 345 5 148 720 143 695 1.73e-103 348
Msa0762360 MtrunA17_Chr2g0295921 39.960 498 287 5 227 720 260 749 2.06e-103 348
Msa0762360 MtrunA17_Chr6g0463211 36.162 495 314 2 227 720 261 754 8.34e-103 347
Msa0762360 MtrunA17_Chr1g0195691 36.731 569 327 6 165 720 198 746 1.12e-102 347
Msa0762360 MtrunA17_Chr6g0463201 34.698 562 346 5 165 720 175 721 6.47e-102 344
Msa0762360 MtrunA17_Chr2g0295911 38.922 501 293 5 227 723 248 739 8.10e-101 341
Msa0762360 MtrunA17_Chr8g0363771 37.400 500 297 3 227 720 243 732 1.74e-100 340
Msa0762360 MtrunA17_Chr2g0295901 38.124 501 297 5 227 723 248 739 2.86e-99 337
Msa0762360 MtrunA17_Chr8g0341811 34.358 553 324 7 178 720 10 533 1.18e-92 316
Msa0762360 MtrunA17_Chr8g0341851 35.827 508 307 9 231 724 207 709 1.57e-90 311
Msa0762360 MtrunA17_Chr8g0341781 34.694 490 318 2 191 679 2 490 1.85e-88 288
Msa0762360 MtrunA17_Chr2g0285731 29.720 535 358 6 215 747 213 731 8.15e-64 233
Msa0762360 MtrunA17_Chr3g0080941 30.241 539 352 10 212 746 213 731 1.03e-63 233
Msa0762360 MtrunA17_Chr3g0080981 30.612 539 353 9 212 746 210 731 2.84e-63 231
Msa0762360 MtrunA17_Chr8g0353541 39.145 304 184 1 418 720 1 304 1.39e-62 228
Msa0762360 MtrunA17_Chr8g0349441 45.000 140 73 1 581 720 2 137 1.14e-32 125
Msa0762360 MtrunA17_Chr2g0333911 34.317 271 162 3 478 732 1 271 7.92e-31 130
Msa0762360 MtrunA17_Chr2g0333921 27.711 249 170 6 215 461 219 459 3.17e-17 85.5
Msa0762360 MtrunA17_Chr8g0353561 34.459 148 96 1 229 375 25 172 2.60e-15 75.5
Msa0762360 MtrunA17_Chr4g0014991 35.514 107 68 1 483 588 13 119 1.82e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762360 AT3G13080.2 58.496 718 284 7 6 720 30 736 0.0 787
Msa0762360 AT3G13080.3 58.496 718 284 7 6 720 30 736 0.0 786
Msa0762360 AT3G13080.4 58.496 718 284 7 6 720 30 736 0.0 786
Msa0762360 AT3G13080.1 58.496 718 284 7 6 720 30 736 0.0 786
Msa0762360 AT3G13080.5 58.496 718 284 7 6 720 30 736 0.0 785
Msa0762360 AT3G13100.1 50.348 719 340 7 7 720 14 720 0.0 675
Msa0762360 AT3G13090.1 51.944 720 312 8 6 720 7 697 0.0 673
Msa0762360 AT3G13100.2 61.975 476 180 1 245 720 1 475 0.0 578
Msa0762360 AT1G04120.2 43.167 600 321 5 122 719 136 717 1.66e-163 513
Msa0762360 AT1G04120.1 43.167 600 321 5 122 719 136 717 2.38e-163 513
Msa0762360 AT1G04120.3 40.772 596 298 6 126 719 140 682 3.07e-144 461
Msa0762360 AT3G60160.2 42.810 612 310 10 122 720 142 726 4.87e-138 442
Msa0762360 AT3G60160.3 42.647 612 311 9 122 720 106 690 1.61e-137 442
Msa0762360 AT3G60160.1 42.647 612 311 9 122 720 142 726 3.17e-137 442
Msa0762360 AT2G47800.1 40.040 497 292 3 225 720 246 737 9.59e-109 364
Msa0762360 AT3G59140.1 35.366 574 340 6 179 746 168 716 1.67e-107 360
Msa0762360 AT3G62700.1 38.554 498 298 4 225 720 244 735 6.15e-104 351
Msa0762360 AT3G21250.4 38.076 499 304 3 231 724 209 707 7.03e-99 336
Msa0762360 AT3G21250.5 38.076 499 304 3 231 724 209 707 7.72e-99 335
Msa0762360 AT3G21250.1 38.076 499 304 3 231 724 203 701 8.92e-99 335
Msa0762360 AT3G21250.2 38.076 499 304 3 231 724 203 701 9.61e-99 335
Msa0762360 AT3G60970.1 50.000 310 155 0 411 720 1 310 2.59e-93 315
Msa0762360 AT2G34660.1 30.824 558 357 9 199 747 193 730 1.50e-71 256
Msa0762360 AT2G34660.2 30.824 558 357 9 199 747 193 730 1.50e-71 256
Msa0762360 AT1G30400.2 30.129 541 358 6 210 747 207 730 4.34e-70 252
Msa0762360 AT1G30400.1 30.129 541 358 6 210 747 207 730 4.34e-70 252
Msa0762360 AT1G30420.2 27.581 649 423 14 107 746 120 730 9.00e-63 229
Msa0762360 AT2G07680.2 32.049 493 321 7 233 718 192 677 2.52e-62 228
Msa0762360 AT2G34660.3 32.200 441 277 7 313 747 19 443 2.58e-62 228
Msa0762360 AT2G07680.6 32.049 493 321 7 233 718 93 578 7.91e-62 227
Msa0762360 AT2G07680.3 32.049 493 321 7 233 718 192 677 8.27e-62 227
Msa0762360 AT1G30420.1 27.538 650 424 14 106 746 119 730 1.07e-61 227
Msa0762360 AT3G21250.6 46.154 247 129 2 482 724 39 285 1.55e-59 219
Msa0762360 AT3G21250.3 46.154 247 129 2 482 724 39 285 1.55e-59 219
Msa0762360 AT1G30410.3 27.821 647 428 14 106 747 119 731 1.63e-58 217
Msa0762360 AT1G30410.2 29.336 542 359 9 211 747 209 731 2.73e-58 216
Msa0762360 AT1G30410.6 29.336 542 359 9 211 747 209 731 2.73e-58 216
Msa0762360 AT1G30410.4 29.336 542 359 9 211 747 209 731 2.73e-58 216
Msa0762360 AT1G30410.5 27.821 647 428 14 106 747 4 616 6.03e-58 215
Msa0762360 AT1G30410.1 29.520 542 361 9 211 747 209 734 1.22e-57 214
Msa0762360 AT2G07680.1 30.832 493 302 7 233 718 195 655 2.89e-56 210
Msa0762360 AT2G07680.5 30.832 493 302 7 233 718 201 661 3.15e-56 210
Msa0762360 AT2G07680.4 30.832 493 302 7 233 718 192 652 3.22e-56 210

Find 143 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTGTTCCACAAACTTTA+AGG 0.123512 5_2:+20481743 None:intergenic
TCAAGTTTGTCTCTGAAAAT+TGG 0.152462 5_2:+20482963 None:intergenic
TTCTGTTCAATTACCTTTAC+TGG 0.182090 5_2:-20483571 Msa0762360:CDS
TTCAATACCTTAATGGAAAA+AGG 0.184067 5_2:-20482788 Msa0762360:CDS
TTTGGCACTTGTACGCTCTT+AGG 0.193113 5_2:-20482144 Msa0762360:CDS
TAAAGTAACCACACTTAAAT+TGG 0.205833 5_2:-20482919 Msa0762360:CDS
CTTTCATCTGTGGTTTCTTT+TGG 0.215558 5_2:-20482162 Msa0762360:CDS
CAAATAGGCATCAGTTCTTT+AGG 0.218428 5_2:-20482698 Msa0762360:CDS
CGCGACTACATTTGTCCTTT+GGG 0.233448 5_2:-20482196 Msa0762360:CDS
AGATAACCCATGAAGGAAAA+TGG 0.236697 5_2:+20483757 None:intergenic
CAAATTCCAGCATTTGAAAA+AGG 0.248554 5_2:+20483101 None:intergenic
TCTATCTGTTTGTTTCTTGT+TGG 0.276320 5_2:-20483379 Msa0762360:CDS
AATGGGTTCCAGAAGAAAAT+TGG 0.280095 5_2:+20483775 None:intergenic
ACTTTACTTTCATGTGTATT+GGG 0.280900 5_2:-20481790 Msa0762360:CDS
TGTCAGCACTTGCAACATTC+AGG 0.294506 5_2:-20482095 Msa0762360:CDS
CCGCGACTACATTTGTCCTT+TGG 0.296658 5_2:-20482197 Msa0762360:CDS
TGTTTGGTGAACACATCATT+AGG 0.300265 5_2:-20481666 Msa0762360:CDS
TACTTTACTTTCATGTGTAT+TGG 0.321286 5_2:-20481791 Msa0762360:CDS
TTAGGGATCCCGCTTGAATC+AGG 0.324872 5_2:-20482126 Msa0762360:CDS
ACCTACTGCAGACCTTATAT+TGG 0.332800 5_2:-20480669 Msa0762360:CDS
TTGTAGAAAGCTTAACAAAT+AGG 0.345871 5_2:-20482713 Msa0762360:CDS
ACATCTGGAAGACTATAAAT+AGG 0.354197 5_2:+20482060 None:intergenic
TTTCCCATCCTTGTAGTTTG+AGG 0.363693 5_2:+20482295 None:intergenic
GTTAAGTCTTTGATAATCTC+AGG 0.364967 5_2:-20482897 Msa0762360:CDS
AATAAATACTCACCAATATA+AGG 0.365128 5_2:+20480657 None:intergenic
TAGAGTTAAAAGAGACTAAA+GGG 0.365834 5_2:-20483139 Msa0762360:CDS
AAACTAAAGTTTCTCTTGAT+AGG 0.370897 5_2:-20482020 Msa0762360:CDS
GTGGGTCCACTTATAACATT+TGG 0.378215 5_2:-20483056 Msa0762360:CDS
GGAGTCTTCTCACCTTCACT+TGG 0.380580 5_2:-20483079 Msa0762360:CDS
TTCCATTCTTCTTTAGAGCT+TGG 0.383282 5_2:-20483409 Msa0762360:CDS
TTGGCACTTGTACGCTCTTA+GGG 0.392476 5_2:-20482143 Msa0762360:CDS
GTTTGGTGAACACATCATTA+GGG 0.393311 5_2:-20481665 Msa0762360:CDS
CATGAAATTGATTATTTCTC+CGG 0.393454 5_2:+20482578 None:intergenic
ATAGAGGATAATATATTGTT+TGG 0.396487 5_2:-20481682 Msa0762360:CDS
TCAAGGCAGTGTCAGACTTC+CGG 0.399520 5_2:-20482597 Msa0762360:CDS
TGTCATTAATTTAAAACTGA+TGG 0.403446 5_2:-20480624 Msa0762360:CDS
GAAGTTACAAAACAAGTTGA+TGG 0.412938 5_2:-20482373 Msa0762360:CDS
TGGTTTGTTCTTCTGTTATG+TGG 0.413465 5_2:-20483267 Msa0762360:CDS
GATAGTAGAGATAGTGTAGT+TGG 0.415466 5_2:-20482993 Msa0762360:CDS
TCAGGCATCCTTAAAGTTTG+TGG 0.415996 5_2:-20481751 Msa0762360:CDS
TTATTGCCAAATGTTATAAG+TGG 0.416681 5_2:+20483050 None:intergenic
GCTATCATTGAAATTACATC+TGG 0.417128 5_2:+20482045 None:intergenic
GGCATGAAGGTTGCTGTTTG+TGG 0.423141 5_2:-20481835 Msa0762360:CDS
TGTGTGGCAGGAATGCTTGC+TGG 0.437603 5_2:-20480744 Msa0762360:intron
TATATGCTTGTTTCCACAAA+GGG 0.440902 5_2:-20483472 Msa0762360:CDS
GTTGCTGTTTGTGGTACTGT+TGG 0.443246 5_2:-20481826 Msa0762360:CDS
TTAGAGTTAAAAGAGACTAA+AGG 0.445328 5_2:-20483140 Msa0762360:CDS
ATCTTCCCACTTTGAATCCA+TGG 0.445516 5_2:+20481703 None:intergenic
GAAGAACAAACCAACACAAA+AGG 0.445682 5_2:+20483277 None:intergenic
AAGTTTCTCTTGATAGGATC+GGG 0.445937 5_2:-20482014 Msa0762360:CDS
GGTGGTAATGGTAATGATAA+TGG 0.449304 5_2:-20483170 Msa0762360:CDS
TAGCTCTCAAAACAGTTACT+TGG 0.450327 5_2:-20483502 Msa0762360:CDS
AGGAACATCCTCAAGGTCTA+AGG 0.451748 5_2:+20483022 None:intergenic
GGTTTGTTCTTCTGTTATGT+GGG 0.456798 5_2:-20483266 Msa0762360:CDS
GATAACCCATGAAGGAAAAT+GGG 0.457160 5_2:+20483758 None:intergenic
CAACATTCAGGATGCTTCAA+AGG 0.459333 5_2:-20482083 Msa0762360:CDS
TGATTGAGATGAAAGTGTTA+AGG 0.463073 5_2:+20482617 None:intergenic
CCAGAAGAAAATTGGTTCCA+AGG 0.467275 5_2:+20483783 None:intergenic
CTTCTCACCTTCACTTGGGT+GGG 0.467362 5_2:-20483074 Msa0762360:CDS
GTTGGTACATGCATGATTTG+TGG 0.475368 5_2:-20482524 Msa0762360:CDS
TATGTTGGCAACTCTTCCAT+CGG 0.481456 5_2:-20482409 Msa0762360:CDS
TAACACTTTCATCTCAATCA+AGG 0.481956 5_2:-20482614 Msa0762360:CDS
AACACTCTTTCTACTTATGT+TGG 0.481959 5_2:-20482834 Msa0762360:CDS
TCTTCTCACCTTCACTTGGG+TGG 0.487298 5_2:-20483075 Msa0762360:CDS
CACCAAGCTCTAAAGAAGAA+TGG 0.495959 5_2:+20483407 None:intergenic
GTGCTGGCAGGTGTCTCCTT+AGG 0.496137 5_2:+20483653 None:intergenic
TCCTCTTTACTCATGAACCT+TGG 0.501952 5_2:-20483800 None:intergenic
GGTGATACACATGGTGGTAA+TGG 0.504817 5_2:-20483182 Msa0762360:CDS
GAAACCACAGATGAAAGTAT+AGG 0.506376 5_2:+20482168 None:intergenic
AAAGTTTCTCTTGATAGGAT+CGG 0.508601 5_2:-20482015 Msa0762360:CDS
CATGCGGGGTATTACAAACA+AGG 0.510664 5_2:+20480570 None:intergenic
TGTTTGTGGTACTGTTGGAT+CGG 0.512586 5_2:-20481821 Msa0762360:CDS
ATGTTGGCAACTCTTCCATC+GGG 0.512809 5_2:-20482408 Msa0762360:CDS
TCAAAGTCACAAGCAGTGCT+TGG 0.512945 5_2:+20482652 None:intergenic
GAGTCTTCTCACCTTCACTT+GGG 0.513960 5_2:-20483078 Msa0762360:CDS
AACCACTTCTATACCAGTAA+AGG 0.516114 5_2:+20483558 None:intergenic
GTTTGTGGTACTGTTGGATC+GGG 0.516712 5_2:-20481820 Msa0762360:CDS
AGTAGCTTTGCAAGTTACAT+TGG 0.519461 5_2:-20482499 Msa0762360:CDS
GTGTGGCAGGAATGCTTGCT+GGG 0.520765 5_2:-20480743 Msa0762360:intron
AAAGAGTTGGTAGTTTCAGT+TGG 0.522193 5_2:-20482542 Msa0762360:CDS
CCATGGTGATTGAGCAACAT+AGG 0.523062 5_2:+20481720 None:intergenic
AGGAGACACCTGCCAGCACT+TGG 0.525811 5_2:-20483649 Msa0762360:CDS
TTCTTTAGGTTGCAGCAACT+CGG 0.530506 5_2:-20482684 Msa0762360:CDS
TACAACCATCATCGTTATGT+TGG 0.537631 5_2:-20482424 Msa0762360:CDS
GTTTCTTAAAATTTCAGATG+TGG 0.537679 5_2:+20482326 None:intergenic
TAGTGTTGTCAATGAGCCTA+AGG 0.538363 5_2:-20483669 Msa0762360:CDS
TACACCTATACTTTCATCTG+TGG 0.540222 5_2:-20482172 Msa0762360:CDS
AAAAGGCTATATGAGAATCA+AGG 0.544376 5_2:-20482771 Msa0762360:CDS
ACTGCAATTGAAGTGGTTGA+TGG 0.544570 5_2:-20481925 Msa0762360:CDS
ACAAAAGAATCAATAAGATA+AGG 0.547957 5_2:+20482810 None:intergenic
GATTCAAAGTGGGAAGATAG+AGG 0.550213 5_2:-20481698 Msa0762360:CDS
TCATGTACTGTTGCTTGTTG+CGG 0.552193 5_2:-20483726 Msa0762360:CDS
TACCTTTACTGGTATAGAAG+TGG 0.553145 5_2:-20483560 Msa0762360:CDS
TCAGAGAGGCCGAACAAGGT+TGG 0.554452 5_2:-20482245 Msa0762360:CDS
AAACAAGTTGATGGAGTCAA+AGG 0.555185 5_2:-20482364 Msa0762360:CDS
GGGTCCTCAAACTACAAGGA+TGG 0.556430 5_2:-20482299 Msa0762360:CDS
TAGGGATCCCGCTTGAATCA+GGG 0.556748 5_2:-20482125 Msa0762360:CDS
CTGCAATTGAAGTGGTTGAT+GGG 0.563207 5_2:-20481924 Msa0762360:CDS
TTTGCAAAACATAAACCTGA+AGG 0.570725 5_2:-20481866 Msa0762360:CDS
TTAAGTCTTTGATAATCTCA+GGG 0.572710 5_2:-20482896 Msa0762360:CDS
TGAGTTAACACCTCAATGCA+TGG 0.575270 5_2:-20483315 Msa0762360:CDS
TTCTCTTGCAATGATCCCGA+TGG 0.575910 5_2:+20482393 None:intergenic
GGTCCTCAAACTACAAGGAT+GGG 0.575967 5_2:-20482298 Msa0762360:CDS
GAGCTCAGAGAGGCCGAACA+AGG 0.585153 5_2:-20482249 Msa0762360:CDS
GCGACTACATTTGTCCTTTG+GGG 0.585900 5_2:-20482195 Msa0762360:CDS
AGTTGCCAACATAACGATGA+TGG 0.586181 5_2:+20482419 None:intergenic
TGAGAATCAAGGCTATGTGT+TGG 0.587063 5_2:-20482760 Msa0762360:CDS
TTCTGATACTGCAATTGAAG+TGG 0.587140 5_2:-20481932 Msa0762360:CDS
AGACTTAACCAATTTAAGTG+TGG 0.587451 5_2:+20482911 None:intergenic
ACCAACTCTTTCAGCATCAA+CGG 0.587936 5_2:+20482554 None:intergenic
GTTGTCGAAAAGCTTCCTCC+TGG 0.587947 5_2:-20481958 Msa0762360:CDS
CAGCAACTGAAGCAAGTCCA+AGG 0.591302 5_2:+20482454 None:intergenic
CCTTAAAGTTTGTGGAACAA+AGG 0.593997 5_2:-20481743 Msa0762360:CDS
ATGAGGGTCCTCAAACTACA+AGG 0.596212 5_2:-20482303 Msa0762360:CDS
ACTTTAAACCAAGTGCTGGC+AGG 0.596743 5_2:+20483641 None:intergenic
CAATCACCATGGATTCAAAG+TGG 0.599579 5_2:-20481709 Msa0762360:CDS
GTTTGTTCTTCTGTTATGTG+GGG 0.599716 5_2:-20483265 Msa0762360:CDS
GTATATGCTTGTTTCCACAA+AGG 0.599742 5_2:-20483473 Msa0762360:CDS
AGAATCTTCCCTGATTCAAG+CGG 0.600675 5_2:+20482117 None:intergenic
TGTGACTTTAAACCAAGTGC+TGG 0.602309 5_2:+20483637 None:intergenic
TTAAGCTAGATAACCCATGA+AGG 0.607022 5_2:+20483750 None:intergenic
GAATCTTCCCTGATTCAAGC+GGG 0.607261 5_2:+20482118 None:intergenic
TAAGAAGACCTTAGACCTTG+AGG 0.618849 5_2:-20483030 Msa0762360:CDS
AAAGTATAGGTGTACCCCAA+AGG 0.620279 5_2:+20482181 None:intergenic
TCAATGCATGGTTTCTGATG+TGG 0.622039 5_2:-20483303 Msa0762360:CDS
TTTACTGGTATAGAAGTGGT+TGG 0.625665 5_2:-20483556 Msa0762360:CDS
AAGTGGACCCACCCAAGTGA+AGG 0.629777 5_2:+20483067 None:intergenic
AATCACCATGGATTCAAAGT+GGG 0.638346 5_2:-20481708 Msa0762360:CDS
ACCGTTGATGCTGAAAGAGT+TGG 0.638663 5_2:-20482555 Msa0762360:CDS
GACAAACTTGAAGCTGATTG+TGG 0.641893 5_2:-20482951 Msa0762360:CDS
CATTAGGGAAAGATATGAGA+AGG 0.644177 5_2:-20481650 Msa0762360:intron
ACATCAGAAACCATGCATTG+AGG 0.645486 5_2:+20483305 None:intergenic
CCTATGTTGCTCAATCACCA+TGG 0.646960 5_2:-20481720 Msa0762360:CDS
ACCAATATAAGGTCTGCAGT+AGG 0.656182 5_2:+20480668 None:intergenic
CCAAAGGACAAATGTAGTCG+CGG 0.656861 5_2:+20482197 None:intergenic
ATGCGGGGTATTACAAACAA+GGG 0.657164 5_2:+20480571 None:intergenic
CTAGCTGAGGAACATCCTCA+AGG 0.658424 5_2:+20483015 None:intergenic
ATTGCAGTATCAGAACTACC+AGG 0.682084 5_2:+20481940 None:intergenic
CTATCTCTACTATCTAGCTG+AGG 0.685160 5_2:+20483002 None:intergenic
AGTCTTTGATAATCTCAGGG+TGG 0.708877 5_2:-20482893 Msa0762360:CDS
TAAAGTAACTGAGCTCAGAG+AGG 0.713494 5_2:-20482259 Msa0762360:CDS
GCAGTATCAGAACTACCAGG+AGG 0.765578 5_2:+20481943 None:intergenic
TTGAATGGTGATACACATGG+TGG 0.782086 5_2:-20483188 Msa0762360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAGTTACCTTAAAA+AGG + chr5_2:20482889-20482908 None:intergenic 15.0%
!! TTTATTATGTCAATATAAAC+TGG - chr5_2:20482918-20482937 Msa0762360:CDS 15.0%
!! ATAAAATAGACAAAAAAAAC+AGG + chr5_2:20483225-20483244 None:intergenic 15.0%
!!! AAAAATGACATGTTTTTTTT+TGG - chr5_2:20483357-20483376 Msa0762360:CDS 15.0%
!! ACAAAAGAATCAATAAGATA+AGG + chr5_2:20481510-20481529 None:intergenic 20.0%
!!! TTGATTTTGTATAAAAACCT+TGG - chr5_2:20481846-20481865 Msa0762360:CDS 20.0%
!!! TGAAATTTTAAGAAACATGA+GGG - chr5_2:20481998-20482017 Msa0762360:CDS 20.0%
!! ATAGAGGATAATATATTGTT+TGG - chr5_2:20482635-20482654 Msa0762360:CDS 20.0%
!!! TCCAATTTTTTGTTAAAACT+CGG - chr5_2:20483016-20483035 Msa0762360:CDS 20.0%
!! AGTGATTCATTAAATTAATC+AGG + chr5_2:20483178-20483197 None:intergenic 20.0%
!! ATCAAATGACATAAGAAAAA+TGG + chr5_2:20483256-20483275 None:intergenic 20.0%
!!! AATTTTTGGTTTAAGTCTTT+TGG - chr5_2:20483482-20483501 Msa0762360:CDS 20.0%
!! AATAAATACTCACCAATATA+AGG + chr5_2:20483663-20483682 None:intergenic 20.0%
!!! TGTCATTAATTTAAAACTGA+TGG - chr5_2:20483693-20483712 Msa0762360:CDS 20.0%
!!! AGTATCAGTTATTTTATCAT+TGG - chr5_2:20483779-20483798 Msa0762360:CDS 20.0%
! TTTGAGAGCTAAATCAAAAA+GGG + chr5_2:20480806-20480825 None:intergenic 25.0%
!!! TTTTGAGAGCTAAATCAAAA+AGG + chr5_2:20480807-20480826 None:intergenic 25.0%
! TTAGAGTTAAAAGAGACTAA+AGG - chr5_2:20481177-20481196 Msa0762360:intron 25.0%
! TAGAGTTAAAAGAGACTAAA+GGG - chr5_2:20481178-20481197 Msa0762360:intron 25.0%
! TTATTGCCAAATGTTATAAG+TGG + chr5_2:20481270-20481289 None:intergenic 25.0%
! TAAAGTAACCACACTTAAAT+TGG - chr5_2:20481398-20481417 Msa0762360:intron 25.0%
!! TTAAGTCTTTGATAATCTCA+GGG - chr5_2:20481421-20481440 Msa0762360:intron 25.0%
!! TCTTTTGTTCAATACCTTAA+TGG - chr5_2:20481522-20481541 Msa0762360:intron 25.0%
! TTCAATACCTTAATGGAAAA+AGG - chr5_2:20481529-20481548 Msa0762360:intron 25.0%
! TTGTAGAAAGCTTAACAAAT+AGG - chr5_2:20481604-20481623 Msa0762360:intron 25.0%
!! CATGAAATTGATTATTTCTC+CGG + chr5_2:20481742-20481761 None:intergenic 25.0%
! GTTTCTTAAAATTTCAGATG+TGG + chr5_2:20481994-20482013 None:intergenic 25.0%
!!! CTGAAATTTTAAGAAACATG+AGG - chr5_2:20481997-20482016 Msa0762360:CDS 25.0%
! AAACTAAAGTTTCTCTTGAT+AGG - chr5_2:20482297-20482316 Msa0762360:CDS 25.0%
! TACTTTACTTTCATGTGTAT+TGG - chr5_2:20482526-20482545 Msa0762360:CDS 25.0%
! ACTTTACTTTCATGTGTATT+GGG - chr5_2:20482527-20482546 Msa0762360:CDS 25.0%
! ATAGATATATATCAGCATCT+TGG + chr5_2:20482823-20482842 None:intergenic 25.0%
! ATATGTAATGTGTATCTACT+TGG - chr5_2:20482985-20483004 Msa0762360:CDS 25.0%
!!! ACCGAGTTTTAACAAAAAAT+TGG + chr5_2:20483020-20483039 None:intergenic 25.0%
! AAATAGACAAAAAAAACAGG+TGG + chr5_2:20483222-20483241 None:intergenic 25.0%
! AATGACATAAGAAAAATGGT+GGG + chr5_2:20483252-20483271 None:intergenic 25.0%
! AAATGACATAAGAAAAATGG+TGG + chr5_2:20483253-20483272 None:intergenic 25.0%
! CAAAAATTAGTTGTACATCA+TGG + chr5_2:20483470-20483489 None:intergenic 25.0%
!! CATGATGTACAACTAATTTT+TGG - chr5_2:20483468-20483487 Msa0762360:CDS 25.0%
!!! TTTAAAACTGACCTCTTTTT+CGG - chr5_2:20483723-20483742 Msa0762360:CDS 25.0%
!!! TGATACTGAATTTTTTCATG+CGG + chr5_2:20483766-20483785 None:intergenic 25.0%
TTCTGTTCAATTACCTTTAC+TGG - chr5_2:20480746-20480765 Msa0762360:intron 30.0%
TATATGCTTGTTTCCACAAA+GGG - chr5_2:20480845-20480864 Msa0762360:intron 30.0%
! TCTATCTGTTTGTTTCTTGT+TGG - chr5_2:20480938-20480957 Msa0762360:intron 30.0%
CAAATTCCAGCATTTGAAAA+AGG + chr5_2:20481219-20481238 None:intergenic 30.0%
!!! CTTTTTCAAATGCTGGAATT+TGG - chr5_2:20481217-20481236 Msa0762360:intron 30.0%
! TCAAGTTTGTCTCTGAAAAT+TGG + chr5_2:20481357-20481376 None:intergenic 30.0%
AGACTTAACCAATTTAAGTG+TGG + chr5_2:20481409-20481428 None:intergenic 30.0%
! GTTAAGTCTTTGATAATCTC+AGG - chr5_2:20481420-20481439 Msa0762360:intron 30.0%
AACACTCTTTCTACTTATGT+TGG - chr5_2:20481483-20481502 Msa0762360:intron 30.0%
! CATATAGCCTTTTTCCATTA+AGG + chr5_2:20481539-20481558 None:intergenic 30.0%
AAAAGGCTATATGAGAATCA+AGG - chr5_2:20481546-20481565 Msa0762360:intron 30.0%
!! TGATTGAGATGAAAGTGTTA+AGG + chr5_2:20481703-20481722 None:intergenic 30.0%
TAACACTTTCATCTCAATCA+AGG - chr5_2:20481703-20481722 Msa0762360:CDS 30.0%
! GAAGTTACAAAACAAGTTGA+TGG - chr5_2:20481944-20481963 Msa0762360:CDS 30.0%
ACATCTGGAAGACTATAAAT+AGG + chr5_2:20482260-20482279 None:intergenic 30.0%
GCTATCATTGAAATTACATC+TGG + chr5_2:20482275-20482294 None:intergenic 30.0%
AAAGTTTCTCTTGATAGGAT+CGG - chr5_2:20482302-20482321 Msa0762360:CDS 30.0%
! ATGTTTTGCAAAGTTGGATT+AGG + chr5_2:20482443-20482462 None:intergenic 30.0%
! AGGTTTATGTTTTGCAAAGT+TGG + chr5_2:20482449-20482468 None:intergenic 30.0%
TTTGCAAAACATAAACCTGA+AGG - chr5_2:20482451-20482470 Msa0762360:CDS 30.0%
! ATAAACCTGAAGGTTTTTCA+TGG - chr5_2:20482461-20482480 Msa0762360:CDS 30.0%
! TTAAGGATGCCTGATATTTT+TGG + chr5_2:20482560-20482579 None:intergenic 30.0%
! TTTTGTTAAAACTCGGTATC+CGG - chr5_2:20483023-20483042 Msa0762360:CDS 30.0%
! TTGATCCATGACTTGAATTT+TGG - chr5_2:20483271-20483290 Msa0762360:CDS 30.0%
GAAAAAATGTCTTCTGATTC+AGG - chr5_2:20483423-20483442 Msa0762360:CDS 30.0%
AATCGTTTGTTCAAATTGTG+TGG - chr5_2:20483557-20483576 Msa0762360:CDS 30.0%
!!! ATACTGAATTTTTTCATGCG+GGG + chr5_2:20483764-20483783 None:intergenic 30.0%
!!! GATACTGAATTTTTTCATGC+GGG + chr5_2:20483765-20483784 None:intergenic 30.0%
! AATGGGTTCCAGAAGAAAAT+TGG + chr5_2:20480545-20480564 None:intergenic 35.0%
GATAACCCATGAAGGAAAAT+GGG + chr5_2:20480562-20480581 None:intergenic 35.0%
AGATAACCCATGAAGGAAAA+TGG + chr5_2:20480563-20480582 None:intergenic 35.0%
TTAAGCTAGATAACCCATGA+AGG + chr5_2:20480570-20480589 None:intergenic 35.0%
!!! GTCACAGAGTTTTGTTCTAT+TGG - chr5_2:20480697-20480716 Msa0762360:CDS 35.0%
TACCTTTACTGGTATAGAAG+TGG - chr5_2:20480757-20480776 Msa0762360:intron 35.0%
AACCACTTCTATACCAGTAA+AGG + chr5_2:20480762-20480781 None:intergenic 35.0%
TTTACTGGTATAGAAGTGGT+TGG - chr5_2:20480761-20480780 Msa0762360:intron 35.0%
TAGCTCTCAAAACAGTTACT+TGG - chr5_2:20480815-20480834 Msa0762360:intron 35.0%
GTATATGCTTGTTTCCACAA+AGG - chr5_2:20480844-20480863 Msa0762360:intron 35.0%
AGAAAAAGAAGAACCCTTTG+TGG + chr5_2:20480861-20480880 None:intergenic 35.0%
! TTCTTCTTTTTCTTGAGCTC+AGG - chr5_2:20480868-20480887 Msa0762360:intron 35.0%
!! TTCCATTCTTCTTTAGAGCT+TGG - chr5_2:20480908-20480927 Msa0762360:intron 35.0%
GAAGAACAAACCAACACAAA+AGG + chr5_2:20481043-20481062 None:intergenic 35.0%
!! TGGTTTGTTCTTCTGTTATG+TGG - chr5_2:20481050-20481069 Msa0762360:intron 35.0%
! GGTTTGTTCTTCTGTTATGT+GGG - chr5_2:20481051-20481070 Msa0762360:intron 35.0%
GTTTGTTCTTCTGTTATGTG+GGG - chr5_2:20481052-20481071 Msa0762360:intron 35.0%
GTGAAAAATGAGAGTGAAGA+AGG - chr5_2:20481081-20481100 Msa0762360:intron 35.0%
!!! CTTCAAGAGCATCTTTTGAA+TGG - chr5_2:20481114-20481133 Msa0762360:intron 35.0%
! CTTTTGAATGGTGATACACA+TGG - chr5_2:20481126-20481145 Msa0762360:intron 35.0%
!! GGTGGTAATGGTAATGATAA+TGG - chr5_2:20481147-20481166 Msa0762360:intron 35.0%
!!! GTTACTCCTTTTTCAAATGC+TGG - chr5_2:20481210-20481229 Msa0762360:intron 35.0%
GATAGTAGAGATAGTGTAGT+TGG - chr5_2:20481324-20481343 Msa0762360:intron 35.0%
!! TATCACTGCTTTTCTTGCAT+TGG - chr5_2:20481458-20481477 Msa0762360:intron 35.0%
CAAATAGGCATCAGTTCTTT+AGG - chr5_2:20481619-20481638 Msa0762360:intron 35.0%
!! AAAGAGTTGGTAGTTTCAGT+TGG - chr5_2:20481775-20481794 Msa0762360:CDS 35.0%
! AGTAGCTTTGCAAGTTACAT+TGG - chr5_2:20481818-20481837 Msa0762360:CDS 35.0%
TACAACCATCATCGTTATGT+TGG - chr5_2:20481893-20481912 Msa0762360:CDS 35.0%
!! AAACAAGTTGATGGAGTCAA+AGG - chr5_2:20481953-20481972 Msa0762360:CDS 35.0%
! TTTTATCAGCCAACCTTGTT+CGG + chr5_2:20482084-20482103 None:intergenic 35.0%
TACACCTATACTTTCATCTG+TGG - chr5_2:20482145-20482164 Msa0762360:CDS 35.0%
! GAAACCACAGATGAAAGTAT+AGG + chr5_2:20482152-20482171 None:intergenic 35.0%
! CTTTCATCTGTGGTTTCTTT+TGG - chr5_2:20482155-20482174 Msa0762360:CDS 35.0%
AAGTTTCTCTTGATAGGATC+GGG - chr5_2:20482303-20482322 Msa0762360:CDS 35.0%
TTCTGATACTGCAATTGAAG+TGG - chr5_2:20482385-20482404 Msa0762360:CDS 35.0%
!! GGAGAAGTACCAAAAATATC+AGG - chr5_2:20482548-20482567 Msa0762360:CDS 35.0%
CCTTTGTTCCACAAACTTTA+AGG + chr5_2:20482577-20482596 None:intergenic 35.0%
CCTTAAAGTTTGTGGAACAA+AGG - chr5_2:20482574-20482593 Msa0762360:CDS 35.0%
AATCACCATGGATTCAAAGT+GGG - chr5_2:20482609-20482628 Msa0762360:CDS 35.0%
! TGTTTGGTGAACACATCATT+AGG - chr5_2:20482651-20482670 Msa0762360:CDS 35.0%
! GTTTGGTGAACACATCATTA+GGG - chr5_2:20482652-20482671 Msa0762360:CDS 35.0%
CATTAGGGAAAGATATGAGA+AGG - chr5_2:20482667-20482686 Msa0762360:CDS 35.0%
GATCTGGAAATCTTGTCATT+TGG - chr5_2:20482716-20482735 Msa0762360:CDS 35.0%
! TTTGGTGATCAGACAGTTAT+AGG - chr5_2:20482734-20482753 Msa0762360:CDS 35.0%
! TACAGGATCTGACCTTTTTA+AGG - chr5_2:20482874-20482893 Msa0762360:CDS 35.0%
!! ACTTTGCTCTGGCTTTAAAT+GGG + chr5_2:20483102-20483121 None:intergenic 35.0%
!! AACTTTGCTCTGGCTTTAAA+TGG + chr5_2:20483103-20483122 None:intergenic 35.0%
AGGATTCATCACAGTGAATT+GGG + chr5_2:20483158-20483177 None:intergenic 35.0%
! TGGTTAGCTACACTAAGTTT+AGG + chr5_2:20483202-20483221 None:intergenic 35.0%
TGACTCCAAAATTCAAGTCA+TGG + chr5_2:20483279-20483298 None:intergenic 35.0%
TTATACAAGTGTCATCCTGT+TGG + chr5_2:20483521-20483540 None:intergenic 35.0%
! CCAGAAGAAAATTGGTTCCA+AGG + chr5_2:20480537-20480556 None:intergenic 40.0%
! CCTTGGAACCAATTTTCTTC+TGG - chr5_2:20480534-20480553 Msa0762360:CDS 40.0%
! TGGAACCCATTTTCCTTCAT+GGG - chr5_2:20480554-20480573 Msa0762360:CDS 40.0%
! TCATGTACTGTTGCTTGTTG+CGG - chr5_2:20480591-20480610 Msa0762360:CDS 40.0%
!! TTGTTGCGGTTTTAGTCTCA+TGG - chr5_2:20480605-20480624 Msa0762360:CDS 40.0%
!! TGTTGCGGTTTTAGTCTCAT+GGG - chr5_2:20480606-20480625 Msa0762360:CDS 40.0%
TAGTGTTGTCAATGAGCCTA+AGG - chr5_2:20480648-20480667 Msa0762360:CDS 40.0%
TGTGACTTTAAACCAAGTGC+TGG + chr5_2:20480683-20480702 None:intergenic 40.0%
!! CACCAAGCTCTAAAGAAGAA+TGG + chr5_2:20480913-20480932 None:intergenic 40.0%
TGAGTTAACACCTCAATGCA+TGG - chr5_2:20481002-20481021 Msa0762360:intron 40.0%
ACATCAGAAACCATGCATTG+AGG + chr5_2:20481015-20481034 None:intergenic 40.0%
TCAATGCATGGTTTCTGATG+TGG - chr5_2:20481014-20481033 Msa0762360:intron 40.0%
! GATGTGGTATCCTTTTGTGT+TGG - chr5_2:20481030-20481049 Msa0762360:intron 40.0%
TTGAATGGTGATACACATGG+TGG - chr5_2:20481129-20481148 Msa0762360:intron 40.0%
GTGGGTCCACTTATAACATT+TGG - chr5_2:20481261-20481280 Msa0762360:intron 40.0%
TAAGAAGACCTTAGACCTTG+AGG - chr5_2:20481287-20481306 Msa0762360:intron 40.0%
CTATCTCTACTATCTAGCTG+AGG + chr5_2:20481318-20481337 None:intergenic 40.0%
GACAAACTTGAAGCTGATTG+TGG - chr5_2:20481366-20481385 Msa0762360:intron 40.0%
! AGTCTTTGATAATCTCAGGG+TGG - chr5_2:20481424-20481443 Msa0762360:intron 40.0%
TGAGAATCAAGGCTATGTGT+TGG - chr5_2:20481557-20481576 Msa0762360:intron 40.0%
!! TTCTTTAGGTTGCAGCAACT+CGG - chr5_2:20481633-20481652 Msa0762360:intron 40.0%
ACCAACTCTTTCAGCATCAA+CGG + chr5_2:20481766-20481785 None:intergenic 40.0%
GTTGGTACATGCATGATTTG+TGG - chr5_2:20481793-20481812 Msa0762360:CDS 40.0%
AGTTGCCAACATAACGATGA+TGG + chr5_2:20481901-20481920 None:intergenic 40.0%
TATGTTGGCAACTCTTCCAT+CGG - chr5_2:20481908-20481927 Msa0762360:CDS 40.0%
TTTCCCATCCTTGTAGTTTG+AGG + chr5_2:20482025-20482044 None:intergenic 40.0%
TAAAGTAACTGAGCTCAGAG+AGG - chr5_2:20482058-20482077 Msa0762360:CDS 40.0%
AAAGTATAGGTGTACCCCAA+AGG + chr5_2:20482139-20482158 None:intergenic 40.0%
AGAATCTTCCCTGATTCAAG+CGG + chr5_2:20482203-20482222 None:intergenic 40.0%
CAACATTCAGGATGCTTCAA+AGG - chr5_2:20482234-20482253 Msa0762360:CDS 40.0%
ATTGCAGTATCAGAACTACC+AGG + chr5_2:20482380-20482399 None:intergenic 40.0%
ACTGCAATTGAAGTGGTTGA+TGG - chr5_2:20482392-20482411 Msa0762360:CDS 40.0%
CTGCAATTGAAGTGGTTGAT+GGG - chr5_2:20482393-20482412 Msa0762360:CDS 40.0%
TCATGCCATGAAAAACCTTC+AGG + chr5_2:20482469-20482488 None:intergenic 40.0%
! GAAGGTTTTTCATGGCATGA+AGG - chr5_2:20482469-20482488 Msa0762360:CDS 40.0%
TGTTTGTGGTACTGTTGGAT+CGG - chr5_2:20482496-20482515 Msa0762360:CDS 40.0%
TCAGGCATCCTTAAAGTTTG+TGG - chr5_2:20482566-20482585 Msa0762360:CDS 40.0%
CAATCACCATGGATTCAAAG+TGG - chr5_2:20482608-20482627 Msa0762360:CDS 40.0%
ATCTTCCCACTTTGAATCCA+TGG + chr5_2:20482617-20482636 None:intergenic 40.0%
GATTCAAAGTGGGAAGATAG+AGG - chr5_2:20482619-20482638 Msa0762360:CDS 40.0%
GATTTCCAGATCCTTCTTCA+GGG + chr5_2:20482708-20482727 None:intergenic 40.0%
AGATTTCCAGATCCTTCTTC+AGG + chr5_2:20482709-20482728 None:intergenic 40.0%
GAGCGTGGAATAAATTTGAG+CGG - chr5_2:20482758-20482777 Msa0762360:CDS 40.0%
GTGGAATAAATTTGAGCGGT+GGG - chr5_2:20482762-20482781 Msa0762360:CDS 40.0%
! TGATGATCCTTTTAGTGCTC+TGG - chr5_2:20482844-20482863 Msa0762360:CDS 40.0%
CCTGAATTAGTCAGTCCTTT+GGG + chr5_2:20483049-20483068 None:intergenic 40.0%
CCAAAGGACTGACTAATTCA+GGG - chr5_2:20483047-20483066 Msa0762360:CDS 40.0%
CAAAGGACTGACTAATTCAG+GGG - chr5_2:20483048-20483067 Msa0762360:CDS 40.0%
CAGGATTCATCACAGTGAAT+TGG + chr5_2:20483159-20483178 None:intergenic 40.0%
GGAATGTAGTTACTTCCAAC+AGG - chr5_2:20483503-20483522 Msa0762360:CDS 40.0%
GTTTGTTCAAATTGTGTGGC+AGG - chr5_2:20483561-20483580 Msa0762360:CDS 40.0%
ACCTACTGCAGACCTTATAT+TGG - chr5_2:20483648-20483667 Msa0762360:CDS 40.0%
ACCAATATAAGGTCTGCAGT+AGG + chr5_2:20483652-20483671 None:intergenic 40.0%
! ATGCGGGGTATTACAAACAA+GGG + chr5_2:20483749-20483768 None:intergenic 40.0%
! CTGGAACCCATTTTCCTTCA+TGG - chr5_2:20480553-20480572 Msa0762360:CDS 45.0%
!! CGGTTTTAGTCTCATGGGTT+TGG - chr5_2:20480611-20480630 Msa0762360:CDS 45.0%
!! ACTTTAAACCAAGTGCTGGC+AGG + chr5_2:20480679-20480698 None:intergenic 45.0%
GGTGATACACATGGTGGTAA+TGG - chr5_2:20481135-20481154 Msa0762360:intron 45.0%
GAGTCTTCTCACCTTCACTT+GGG - chr5_2:20481239-20481258 Msa0762360:intron 45.0%
AGGAACATCCTCAAGGTCTA+AGG + chr5_2:20481298-20481317 None:intergenic 45.0%
TCAAAGTCACAAGCAGTGCT+TGG + chr5_2:20481668-20481687 None:intergenic 45.0%
ACCGTTGATGCTGAAAGAGT+TGG - chr5_2:20481762-20481781 Msa0762360:CDS 45.0%
ATGTTGGCAACTCTTCCATC+GGG - chr5_2:20481909-20481928 Msa0762360:CDS 45.0%
TTCTCTTGCAATGATCCCGA+TGG + chr5_2:20481927-20481946 None:intergenic 45.0%
ATGAGGGTCCTCAAACTACA+AGG - chr5_2:20482014-20482033 Msa0762360:CDS 45.0%
GGTCCTCAAACTACAAGGAT+GGG - chr5_2:20482019-20482038 Msa0762360:CDS 45.0%
CCAAAGGACAAATGTAGTCG+CGG + chr5_2:20482123-20482142 None:intergenic 45.0%
CGCGACTACATTTGTCCTTT+GGG - chr5_2:20482121-20482140 Msa0762360:CDS 45.0%
GCGACTACATTTGTCCTTTG+GGG - chr5_2:20482122-20482141 Msa0762360:CDS 45.0%
TTTGGCACTTGTACGCTCTT+AGG - chr5_2:20482173-20482192 Msa0762360:CDS 45.0%
TTGGCACTTGTACGCTCTTA+GGG - chr5_2:20482174-20482193 Msa0762360:CDS 45.0%
GAATCTTCCCTGATTCAAGC+GGG + chr5_2:20482202-20482221 None:intergenic 45.0%
TGTCAGCACTTGCAACATTC+AGG - chr5_2:20482222-20482241 Msa0762360:CDS 45.0%
!! GTTGCTGTTTGTGGTACTGT+TGG - chr5_2:20482491-20482510 Msa0762360:CDS 45.0%
GTTTGTGGTACTGTTGGATC+GGG - chr5_2:20482497-20482516 Msa0762360:CDS 45.0%
CCATGGTGATTGAGCAACAT+AGG + chr5_2:20482600-20482619 None:intergenic 45.0%
CCTATGTTGCTCAATCACCA+TGG - chr5_2:20482597-20482616 Msa0762360:CDS 45.0%
CGTGGAATAAATTTGAGCGG+TGG - chr5_2:20482761-20482780 Msa0762360:CDS 45.0%
! TGAGCATCCAGAGCACTAAA+AGG + chr5_2:20482854-20482873 None:intergenic 45.0%
AATTAGTCAGTCCTTTGGGC+CGG + chr5_2:20483045-20483064 None:intergenic 45.0%
CCCAAAGGACTGACTAATTC+AGG - chr5_2:20483046-20483065 Msa0762360:CDS 45.0%
CCCTGAATTAGTCAGTCCTT+TGG + chr5_2:20483050-20483069 None:intergenic 45.0%
AATTCAGGGGACCAATCCTA+CGG - chr5_2:20483061-20483080 Msa0762360:CDS 45.0%
AGCCAGAGCAAAGTTCTGTA+TGG - chr5_2:20483108-20483127 Msa0762360:CDS 45.0%
GTCCATACAGAACTTTGCTC+TGG + chr5_2:20483113-20483132 None:intergenic 45.0%
ACAAACAAGGGCCGAAAAAG+AGG + chr5_2:20483737-20483756 None:intergenic 45.0%
! CATGCGGGGTATTACAAACA+AGG + chr5_2:20483750-20483769 None:intergenic 45.0%
GGAGTCTTCTCACCTTCACT+TGG - chr5_2:20481238-20481257 Msa0762360:intron 50.0%
TCTTCTCACCTTCACTTGGG+TGG - chr5_2:20481242-20481261 Msa0762360:intron 50.0%
CTTCTCACCTTCACTTGGGT+GGG - chr5_2:20481243-20481262 Msa0762360:intron 50.0%
CTAGCTGAGGAACATCCTCA+AGG + chr5_2:20481305-20481324 None:intergenic 50.0%
TCAAGGCAGTGTCAGACTTC+CGG - chr5_2:20481720-20481739 Msa0762360:CDS 50.0%
CAGCAACTGAAGCAAGTCCA+AGG + chr5_2:20481866-20481885 None:intergenic 50.0%
GGGTCCTCAAACTACAAGGA+TGG - chr5_2:20482018-20482037 Msa0762360:CDS 50.0%
CCGCGACTACATTTGTCCTT+TGG - chr5_2:20482120-20482139 Msa0762360:CDS 50.0%
TTAGGGATCCCGCTTGAATC+AGG - chr5_2:20482191-20482210 Msa0762360:CDS 50.0%
TAGGGATCCCGCTTGAATCA+GGG - chr5_2:20482192-20482211 Msa0762360:CDS 50.0%
GTTGTCGAAAAGCTTCCTCC+TGG - chr5_2:20482359-20482378 Msa0762360:CDS 50.0%
GCAGTATCAGAACTACCAGG+AGG + chr5_2:20482377-20482396 None:intergenic 50.0%
!! GGCATGAAGGTTGCTGTTTG+TGG - chr5_2:20482482-20482501 Msa0762360:CDS 50.0%
TGAAGCGTGTTCCCTGAAGA+AGG - chr5_2:20482694-20482713 Msa0762360:CDS 50.0%
GTGTTCCCTGAAGAAGGATC+TGG - chr5_2:20482700-20482719 Msa0762360:CDS 50.0%
! AGTGCTCTGGATGCTCATAC+AGG - chr5_2:20482857-20482876 Msa0762360:CDS 50.0%
AAGTGGACCCACCCAAGTGA+AGG + chr5_2:20481253-20481272 None:intergenic 55.0%
TCAGAGAGGCCGAACAAGGT+TGG - chr5_2:20482072-20482091 Msa0762360:CDS 55.0%
CAGACAGTTATAGGCGAGCG+TGG - chr5_2:20482743-20482762 Msa0762360:CDS 55.0%
AAACTCGGTATCCGGCCCAA+AGG - chr5_2:20483031-20483050 Msa0762360:CDS 55.0%
CCAATCCTACGGTCCACTAG+CGG - chr5_2:20483072-20483091 Msa0762360:CDS 55.0%
CAATCCTACGGTCCACTAGC+GGG - chr5_2:20483073-20483092 Msa0762360:CDS 55.0%
AATCCTACGGTCCACTAGCG+GGG - chr5_2:20483074-20483093 Msa0762360:CDS 55.0%
TGTGTGGCAGGAATGCTTGC+TGG - chr5_2:20483573-20483592 Msa0762360:CDS 55.0%
GTGTGGCAGGAATGCTTGCT+GGG - chr5_2:20483574-20483593 Msa0762360:CDS 55.0%
! GTGCTGGCAGGTGTCTCCTT+AGG + chr5_2:20480667-20480686 None:intergenic 60.0%
AGGAGACACCTGCCAGCACT+TGG - chr5_2:20480668-20480687 Msa0762360:CDS 60.0%
GAGCTCAGAGAGGCCGAACA+AGG - chr5_2:20482068-20482087 Msa0762360:CDS 60.0%
! CCGCTAGTGGACCGTAGGAT+TGG + chr5_2:20483075-20483094 None:intergenic 60.0%
ATCCTACGGTCCACTAGCGG+GGG - chr5_2:20483075-20483094 Msa0762360:CDS 60.0%
TTAAATGGGCCCCCCGCTAG+TGG + chr5_2:20483088-20483107 None:intergenic 60.0%
TCCTACGGTCCACTAGCGGG+GGG - chr5_2:20483076-20483095 Msa0762360:CDS 65.0%
! GCCCCCCGCTAGTGGACCGT+AGG + chr5_2:20483080-20483099 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 20480529 20483810 20480529 ID=Msa0762360;Name=Msa0762360
chr5_2 mRNA 20480529 20483810 20480529 ID=Msa0762360-mRNA-1;Parent=Msa0762360;Name=Msa0762360-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|0|0.5|2|0|795
chr5_2 exon 20481651 20483810 20481651 ID=Msa0762360-mRNA-1:exon:8608;Parent=Msa0762360-mRNA-1
chr5_2 exon 20480529 20480756 20480529 ID=Msa0762360-mRNA-1:exon:8607;Parent=Msa0762360-mRNA-1
chr5_2 CDS 20481651 20483810 20481651 ID=Msa0762360-mRNA-1:cds;Parent=Msa0762360-mRNA-1
chr5_2 CDS 20480529 20480756 20480529 ID=Msa0762360-mRNA-1:cds;Parent=Msa0762360-mRNA-1
Gene Sequence

>Msa0762360

ATGAACCTTGGAACCAATTTTCTTCTGGAACCCATTTTCCTTCATGGGTTATCTAGCTTAATTCATGTACTGTTGCTTGTTGCGGTTTTAGTCTCATGGGTTTGGAAAAAAATCACAACTAGTGTTGTCAATGAGCCTAAGGAGACACCTGCCAGCACTTGGTTTAAAGTCACAGAGTTTTGTTCTATTGGTTTCTCTTCTTTCAATTTTGTTCTGTTTCTGTTCAATTACCTTTACTGGTATAGAAGTGGTTGGTCAGAAGAAAAAGTTGTTACCCTTTTTGATTTAGCTCTCAAAACAGTTACTTGGTGTGTTGTATATGCTTGTTTCCACAAAGGGTTCTTCTTTTTCTTGAGCTCAGGTCAAAGAAAAAGAAAGTTTCCATTCTTCTTTAGAGCTTGGTGTGTTTTCTATCTGTTTGTTTCTTGTTGGTGCTTTGTTATTGACATACTCGTTTTGTATGAAAATCATATTGAGTTAACACCTCAATGCATGGTTTCTGATGTGGTATCCTTTTGTGTTGGTTTGTTCTTCTGTTATGTGGGGTATTGTGTGAAAAATGAGAGTGAAGAAGGTGATAGAACTCTTCAAGAGCATCTTTTGAATGGTGATACACATGGTGGTAATGGTAATGATAATGGTAATGCTTTAGAGTTAAAAGAGACTAAAGGGAGTGACACTGTTACTCCTTTTTCAAATGCTGGAATTTGGAGTCTTCTCACCTTCACTTGGGTGGGTCCACTTATAACATTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTTCCTCAGCTAGATAGTAGAGATAGTGTAGTTGGAGCTTTTCCAATTTTCAGAGACAAACTTGAAGCTGATTGTGGTGCAATCAATAAAGTAACCACACTTAAATTGGTTAAGTCTTTGATAATCTCAGGGTGGAAAGTGATTCTTATCACTGCTTTTCTTGCATTGGTAAACACTCTTTCTACTTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAATACCTTAATGGAAAAAGGCTATATGAGAATCAAGGCTATGTGTTGGTTTCTGCTTTTTTCTTTGCAAAGCTTGTAGAAAGCTTAACAAATAGGCATCAGTTCTTTAGGTTGCAGCAACTCGGACTTCGAATCCAAGCACTGCTTGTGACTTTGATATATAACAAAGCCTTAACACTTTCATCTCAATCAAGGCAGTGTCAGACTTCCGGAGAAATAATCAATTTCATGACCGTTGATGCTGAAAGAGTTGGTAGTTTCAGTTGGTACATGCATGATTTGTGGATAGTAGCTTTGCAAGTTACATTGGCATTGTTGATTTTGTATAAAAACCTTGGACTTGCTTCAGTTGCTGCTTTTGCTACAACCATCATCGTTATGTTGGCAACTCTTCCATCGGGATCATTGCAAGAGAAGTTACAAAACAAGTTGATGGAGTCAAAGGATACTAGAATGAAGACCACATCTGAAATTTTAAGAAACATGAGGGTCCTCAAACTACAAGGATGGGAAATGAAGTTTTTGTCTAAAGTAACTGAGCTCAGAGAGGCCGAACAAGGTTGGCTGATAAAATTTCTATATACTTCAGCCGCGACTACATTTGTCCTTTGGGGTACACCTATACTTTCATCTGTGGTTTCTTTTGGCACTTGTACGCTCTTAGGGATCCCGCTTGAATCAGGGAAGATTCTGTCAGCACTTGCAACATTCAGGATGCTTCAAAGGCCTATTTATAGTCTTCCAGATGTAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGATAGGATCGGGTCGTTTCTTCGTCTTGATGACTTGCAGTCTGATGTTGTCGAAAAGCTTCCTCCTGGTAGTTCTGATACTGCAATTGAAGTGGTTGATGGGAATTTTTCTTGTGATTTATCTTCACCTAATCCAACTTTGCAAAACATAAACCTGAAGGTTTTTCATGGCATGAAGGTTGCTGTTTGTGGTACTGTTGGATCGGGCAAGTCTACTTTACTTTCATGTGTATTGGGAGAAGTACCAAAAATATCAGGCATCCTTAAAGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATTCAAAGTGGGAAGATAGAGGATAATATATTGTTTGGTGAACACATCATTAGGGAAAGATATGAGAAGGAATGCTTGCTGGGTGTTTTAAGTTCAAAAACAGTTGTTTACGTTACTCATCAAGTCGAGTTCTTACCTACTGCAGACCTTATATTGGTGAGTATTTATTCTTATTCTATTGTCATTAATTTAAAACTGATGGATTTTCTTTTAAAACTGACCTCTTTTTCGGCCCTTGTTTGTAATACCCCGCATGAAAAAATTCAGTATCAGTTATTTTATCATTGGAAAATTTAA

Protein sequence

>Msa0762360

MNLGTNFLLEPIFLHGLSSLIHVLLLVAVLVSWVWKKITTSVVNEPKETPASTWFKVTEFCSIGFSSFNFVLFLFNYLYWYRSGWSEEKVVTLFDLALKTVTWCVVYACFHKGFFFFLSSGQRKRKFPFFFRAWCVFYLFVSCWCFVIDILVLYENHIELTPQCMVSDVVSFCVGLFFCYVGYCVKNESEEGDRTLQEHLLNGDTHGGNGNDNGNALELKETKGSDTVTPFSNAGIWSLLTFTWVGPLITFGNKKTLDLEDVPQLDSRDSVVGAFPIFRDKLEADCGAINKVTTLKLVKSLIISGWKVILITAFLALVNTLSTYVGPYLIDSFVQYLNGKRLYENQGYVLVSAFFFAKLVESLTNRHQFFRLQQLGLRIQALLVTLIYNKALTLSSQSRQCQTSGEIINFMTVDAERVGSFSWYMHDLWIVALQVTLALLILYKNLGLASVAAFATTIIVMLATLPSGSLQEKLQNKLMESKDTRMKTTSEILRNMRVLKLQGWEMKFLSKVTELREAEQGWLIKFLYTSAATTFVLWGTPILSSVVSFGTCTLLGIPLESGKILSALATFRMLQRPIYSLPDVISMIAQTKVSLDRIGSFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSCDLSSPNPTLQNINLKVFHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGEHIIRERYEKECLLGVLSSKTVVYVTHQVEFLPTADLILVSIYSYSIVINLKLMDFLLKLTSFSALVCNTPHEKIQYQLFYHWKI*