AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123940 MtrunA17_Chr7g0263731 97.863 468 10 0 1 468 1 468 0.0 932
Msa1123940 MtrunA17_Chr1g0181581 69.665 478 121 11 1 467 1 465 0.0 596
Msa1123940 MtrunA17_Chr6g0462191 50.873 458 188 9 1 453 1 426 4.66e-121 360
Msa1123940 MtrunA17_Chr1g0200161 39.293 509 238 11 1 465 1 482 5.26e-98 303
Msa1123940 MtrunA17_Chr4g0045641 35.294 357 178 15 108 439 146 474 5.62e-43 159
Msa1123940 MtrunA17_Chr4g0025441 47.917 192 96 2 107 298 95 282 7.72e-42 154
Msa1123940 MtrunA17_Chr8g0346021 32.061 393 200 14 94 438 113 486 1.53e-41 155
Msa1123940 MtrunA17_Chr4g0020671 31.590 459 210 23 3 439 4 380 2.05e-38 144
Msa1123940 MtrunA17_Chr2g0283321 40.828 169 97 2 107 275 62 227 5.79e-36 134
Msa1123940 MtrunA17_Chr7g0273861 28.539 438 219 18 1 411 1 371 6.30e-32 126
Msa1123940 MtrunA17_Chr3g0135851 44.385 187 89 5 103 275 80 265 1.23e-31 126
Msa1123940 MtrunA17_Chr2g0316401 35.928 167 106 1 109 275 75 240 7.46e-31 121
Msa1123940 MtrunA17_Chr1g0146931 39.109 202 97 4 106 281 120 321 3.14e-28 117
Msa1123940 MtrunA17_Chr3g0126901 27.352 457 219 15 1 429 1 372 5.33e-26 110
Msa1123940 MtrunA17_Chr1g0204901 31.950 241 130 8 1 211 1 237 9.92e-20 91.7
Msa1123940 MtrunA17_Chr1g0203711 28.254 315 173 10 107 411 114 385 7.56e-19 88.6
Msa1123940 MtrunA17_Chr8g0340761 31.496 254 125 12 1 216 1 243 1.01e-18 88.2
Msa1123940 MtrunA17_Chr8g0342551 33.681 288 166 8 1 283 1 268 1.51e-18 87.8
Msa1123940 MtrunA17_Chr8g0389781 40.458 131 61 4 103 223 121 244 2.33e-18 87.4
Msa1123940 MtrunA17_Chr6g0472551 53.165 79 36 1 107 184 115 193 2.98e-18 87.0
Msa1123940 MtrunA17_Chr2g0330051 32.000 325 150 10 105 409 69 342 3.53e-18 86.3
Msa1123940 MtrunA17_Chr2g0330921 48.780 82 36 1 97 172 80 161 1.14e-16 81.3
Msa1123940 MtrunA17_Chr1g0172611 27.500 280 179 10 1 265 1 271 3.78e-16 79.7
Msa1123940 MtrunA17_Chr7g0273951 50.000 74 37 0 110 183 108 181 1.76e-15 78.2
Msa1123940 MtrunA17_Chr4g0060381 28.507 221 118 3 54 272 61 243 3.15e-15 78.2
Msa1123940 MtrunA17_Chr1g0166431 43.000 100 56 1 108 206 117 216 5.87e-14 73.6
Msa1123940 MtrunA17_Chr8g0371131 48.485 66 34 0 106 171 69 134 8.40e-14 68.6
Msa1123940 MtrunA17_Chr3g0130441 36.842 114 65 3 251 362 1 109 2.02e-12 64.3
Msa1123940 MtrunA17_Chr1g0156121 31.481 162 84 5 108 267 124 260 3.05e-12 68.9
Msa1123940 MtrunA17_Chr3g0130451 54.098 61 25 1 169 226 47 107 5.60e-12 62.4
Msa1123940 MtrunA17_Chr4g0057321 46.970 66 35 0 106 171 86 151 1.35e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123940 AT5G03040.1 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa1123940 AT5G03040.3 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa1123940 AT5G03040.2 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa1123940 AT3G09710.1 48.211 475 199 15 1 456 1 447 1.14e-111 337
Msa1123940 AT3G52290.1 46.383 470 190 14 1 456 1 422 2.02e-111 336
Msa1123940 AT3G09710.2 46.830 489 199 16 1 456 1 461 3.00e-108 329
Msa1123940 AT2G26410.2 37.425 334 160 8 106 434 146 435 2.42e-56 196
Msa1123940 AT2G26410.1 37.425 334 160 8 106 434 146 435 2.42e-56 196
Msa1123940 AT3G22190.3 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1123940 AT3G22190.2 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1123940 AT3G22190.4 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1123940 AT3G22190.1 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1123940 AT3G59690.2 33.770 305 152 8 111 411 172 430 1.43e-37 144
Msa1123940 AT3G59690.1 33.770 305 152 8 111 411 172 430 1.43e-37 144
Msa1123940 AT2G33990.1 40.698 172 100 1 107 278 46 215 1.71e-37 138
Msa1123940 AT2G26180.1 46.667 195 89 4 95 275 65 258 1.15e-36 140
Msa1123940 AT1G01110.2 28.858 499 266 20 1 440 1 469 1.43e-36 141
Msa1123940 AT2G43680.4 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1123940 AT2G43680.2 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1123940 AT2G43680.3 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1123940 AT2G43680.5 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1123940 AT2G43680.1 31.672 341 173 12 105 439 320 606 1.71e-35 140
Msa1123940 AT4G00820.1 30.833 360 210 13 106 440 130 475 1.93e-34 135
Msa1123940 AT3G15050.1 37.870 169 104 1 108 276 50 217 3.33e-33 126
Msa1123940 AT3G49260.1 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa1123940 AT3G49260.4 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa1123940 AT3G49260.2 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa1123940 AT5G13460.1 29.508 305 158 10 1 279 1 274 5.23e-30 122
Msa1123940 AT3G49260.3 30.293 307 176 10 1 275 1 301 1.85e-29 120
Msa1123940 AT1G72670.1 34.906 212 124 5 95 295 74 282 1.45e-28 117
Msa1123940 AT4G10640.1 28.189 486 189 20 1 436 1 376 2.54e-22 99.4
Msa1123940 AT1G17480.1 36.306 157 87 3 106 260 92 237 7.08e-21 94.4
Msa1123940 AT4G29150.1 44.444 99 55 0 102 200 125 223 7.97e-18 85.5
Msa1123940 AT4G14750.1 43.529 85 48 0 90 174 87 171 1.46e-17 84.7
Msa1123940 AT4G14750.2 43.529 85 48 0 90 174 146 230 2.06e-17 84.7
Msa1123940 AT3G16490.1 43.000 100 52 2 101 197 100 197 2.21e-17 84.3
Msa1123940 AT4G14750.3 43.529 85 48 0 90 174 146 230 2.26e-17 84.7
Msa1123940 AT1G18840.1 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa1123940 AT1G18840.3 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa1123940 AT1G18840.2 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa1123940 AT5G35670.1 35.542 166 94 5 107 270 159 313 4.03e-16 80.9
Msa1123940 AT1G74690.1 31.953 169 85 3 108 272 113 255 4.80e-16 81.3
Msa1123940 AT4G23060.1 42.157 102 57 1 82 181 139 240 1.65e-15 79.3
Msa1123940 AT5G07240.1 61.017 59 23 0 110 168 108 166 1.79e-15 78.6
Msa1123940 AT5G07240.2 61.017 59 23 0 110 168 154 212 2.22e-15 78.6
Msa1123940 AT1G51960.1 54.839 62 28 0 110 171 102 163 6.29e-15 76.3
Msa1123940 AT5G62070.1 59.649 57 23 0 106 162 115 171 9.05e-15 76.3
Msa1123940 AT3G51380.1 50.000 64 32 0 106 169 35 98 1.66e-14 69.7
Msa1123940 AT5G03960.1 36.000 150 65 3 100 232 99 234 7.27e-14 73.6
Msa1123940 AT5G03960.3 36.000 150 65 3 100 232 100 235 7.64e-14 73.6
Msa1123940 AT5G03960.2 36.000 150 65 3 100 232 100 235 7.64e-14 73.6
Msa1123940 AT3G49380.1 54.237 59 27 0 106 164 108 166 4.36e-11 64.7
Msa1123940 AT1G14380.7 27.477 222 117 7 70 274 42 236 7.78e-11 64.7
Msa1123940 AT1G14380.6 27.477 222 117 7 70 274 42 236 8.85e-11 64.7
Msa1123940 AT1G14380.5 27.477 222 117 7 70 274 42 236 8.85e-11 64.7
Msa1123940 AT1G14380.2 27.477 222 117 7 70 274 42 236 8.85e-11 64.7

Find 141 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCCCATTATCTTCT+TGG 0.102885 7_3:-74944448 None:intergenic
CTCATACTTGCTCAGTAATT+TGG 0.160600 7_3:-74945529 None:intergenic
CACAGGTAACTCTGCATTTA+TGG 0.176562 7_3:-74947191 None:intergenic
TTTACAGGAACATGTATTAA+AGG 0.248528 7_3:+74943932 Msa1123940:five_prime_UTR
CAATTTGTTCTTTAGATTGT+AGG 0.261072 7_3:-74945503 None:intergenic
AGCTGGGTGAGCCAGGATTT+TGG 0.263792 7_3:-74946784 None:intergenic
TGATATAAAGGATCAAATTA+AGG 0.280243 7_3:+74944421 Msa1123940:intron
CTGTACACTTGCCATGCTTT+TGG 0.281192 7_3:-74946906 None:intergenic
AAAATACAAATTGATTAATA+TGG 0.294508 7_3:-74947420 None:intergenic
ATTGCTGCCACTTCATCCTT+TGG 0.307055 7_3:-74944858 None:intergenic
TAATGGGGAAGAAGGGAAAT+TGG 0.319680 7_3:+74944457 Msa1123940:exon
AGTTCGAGCCGCAGCATTAT+AGG 0.323895 7_3:+74946695 Msa1123940:CDS
TTCCGCAGGCACTCTATTGC+CGG 0.327399 7_3:+74946938 Msa1123940:CDS
AAAAGTATTAATGAAATGTT+TGG 0.336829 7_3:-74947370 None:intergenic
AGTCCATTAGCAAAAGAAAA+TGG 0.343691 7_3:+74947064 Msa1123940:CDS
TCAGTTAATTTAATATCTTC+TGG 0.345648 7_3:-74944702 None:intergenic
AAGGAATGCCAAGAAGATAA+TGG 0.348066 7_3:+74944440 Msa1123940:exon
AGGAATGCCAAGAAGATAAT+GGG 0.352188 7_3:+74944441 Msa1123940:exon
TCCATCAGTTCCAAGTTATA+TGG 0.368788 7_3:+74946997 Msa1123940:CDS
CGGCTTAGTAGGAGTTGAAT+TGG 0.370892 7_3:-74946813 None:intergenic
CTTGGCCTCGCAGGCGAAGC+CGG 0.371444 7_3:-74947136 None:intergenic
TTAGGCAAGAAGAGCATTGC+GGG 0.387422 7_3:+74945139 Msa1123940:intron
AGAAAATGGCAAACAAGAAA+AGG 0.397205 7_3:+74947078 Msa1123940:CDS
GGCTTATGCATTCACTCATC+AGG 0.397924 7_3:+74945578 Msa1123940:CDS
TGGATCCCACCAATCCTACT+TGG 0.400459 7_3:+74946579 Msa1123940:CDS
GACTGAAAGCTGGGTGAGCC+AGG 0.404427 7_3:-74946791 None:intergenic
TTTATGGCGGTTTCTACCTT+CGG 0.410128 7_3:-74947175 None:intergenic
ATCTATGAATCCAATGTTTG+TGG 0.410976 7_3:+74946559 Msa1123940:CDS
TCCATAACCCAACTTCCCTT+TGG 0.416087 7_3:-74946875 None:intergenic
ATGGATGGCTGCCCGACCTT+GGG 0.416101 7_3:+74946622 Msa1123940:CDS
TAGGAGGGTCAGAATGTTAG+AGG 0.417574 7_3:+74945280 Msa1123940:CDS
TTCAGAGTTGAGCTGGAAAC+GGG 0.418428 7_3:-74946741 None:intergenic
CAGAATGTTAGAGGAGAATC+AGG 0.419135 7_3:+74945289 Msa1123940:CDS
AAACAAGAAAAGGGGTCCTT+TGG 0.420323 7_3:+74947088 Msa1123940:CDS
AGAGCATTGCGGGCTTTAAG+AGG 0.426239 7_3:+74945149 Msa1123940:CDS
CTGATTATTATATAATCAAC+TGG 0.427029 7_3:-74947227 None:intergenic
TGCAATCTCAGATTCGTTCT+AGG 0.427507 7_3:+74945261 Msa1123940:CDS
CATTATAGATTGGGGAGGAA+TGG 0.428913 7_3:+74945472 Msa1123940:intron
TCCAAAGGGAAGTTGGGTTA+TGG 0.429384 7_3:+74946874 Msa1123940:CDS
GAAAATGGCAAACAAGAAAA+GGG 0.429410 7_3:+74947079 Msa1123940:CDS
TTGGCCTCGCAGGCGAAGCC+GGG 0.432715 7_3:-74947135 None:intergenic
TTCTTTACCATTGACCTTGA+GGG 0.433900 7_3:+74947451 Msa1123940:three_prime_UTR
GAAGCAGAACCCGGCTTAGT+AGG 0.447007 7_3:-74946824 None:intergenic
ATTATAGATTGGGGAGGAAT+GGG 0.448809 7_3:+74945473 Msa1123940:intron
TTTCAGAGTTGAGCTGGAAA+CGG 0.462924 7_3:-74946742 None:intergenic
ATATCTTCTGGCGGAGGAAG+AGG 0.467550 7_3:-74944690 None:intergenic
GATGGATGGCTGCCCGACCT+TGG 0.469154 7_3:+74946621 Msa1123940:CDS
CATGTATTAAAGGTGTGGTT+TGG 0.469410 7_3:+74943942 Msa1123940:five_prime_UTR
CTAGCAACTGAAGCAGAACC+CGG 0.473296 7_3:-74946833 None:intergenic
GGCGAGTCCAAAGGGAAGTT+GGG 0.474248 7_3:+74946868 Msa1123940:CDS
CAAATTACTGAGCAAGTATG+AGG 0.474416 7_3:+74945530 Msa1123940:CDS
AATGTATTTCAGAGTTGAGC+TGG 0.481876 7_3:-74946748 None:intergenic
GGATCCCACCAATCCTACTT+GGG 0.483131 7_3:+74946580 Msa1123940:CDS
CAAGAAGATAATGGGGAAGA+AGG 0.486516 7_3:+74944449 Msa1123940:exon
TAATACATGTTCCTGTAAAG+AGG 0.486866 7_3:-74943928 None:intergenic
GAAACTCTTGATTCTAAATG+TGG 0.487636 7_3:+74947608 Msa1123940:three_prime_UTR
CGGGTTCTGCTTCAGTTGCT+AGG 0.487745 7_3:+74946834 Msa1123940:CDS
CAATTCAACTCCTACTAAGC+CGG 0.488786 7_3:+74946814 Msa1123940:CDS
AGGCGAGTCCAAAGGGAAGT+TGG 0.492154 7_3:+74946867 Msa1123940:CDS
CTTGTTGATGAAACACAGAA+TGG 0.495295 7_3:-74947528 None:intergenic
CTGAAGAAGGCGAGTCCAAA+GGG 0.500013 7_3:+74946860 Msa1123940:CDS
AGTTGAATTGGACTGAAAGC+TGG 0.502940 7_3:-74946801 None:intergenic
GCTGTCTGAACAGAACGAAC+AGG 0.506676 7_3:-74944789 None:intergenic
AGCGGAGGGTACTCATGGCT+TGG 0.509205 7_3:-74945217 None:intergenic
AGGACAGAAATCATTAAAGT+AGG 0.510647 7_3:+74947256 Msa1123940:three_prime_UTR
ATTGCGGGCTTTAAGAGGGC+TGG 0.511040 7_3:+74945154 Msa1123940:CDS
CGACTCAATCTGCGAAAGCT+AGG 0.512605 7_3:+74947023 Msa1123940:CDS
GGTGGACCTGAATGACGCCT+TGG 0.514462 7_3:-74947154 None:intergenic
TATTAAAGGTGTGGTTTGGT+TGG 0.514474 7_3:+74943946 Msa1123940:five_prime_UTR
AGCTCTTACAGAAGCACGCA+AGG 0.515912 7_3:+74945324 Msa1123940:CDS
TCCGCAGGCACTCTATTGCC+GGG 0.521984 7_3:+74946939 Msa1123940:CDS
CCAGTAGCGAGCCAAAATCC+TGG 0.525286 7_3:+74946773 Msa1123940:CDS
AGCTCTCAGCCCTGACTCAA+AGG 0.528686 7_3:+74944497 Msa1123940:CDS
GGTGAGATTGAAAACATTGA+TGG 0.529438 7_3:+74945175 Msa1123940:CDS
TACAGTCAGATCGGTTCCGC+AGG 0.535268 7_3:+74946924 Msa1123940:CDS
AATACATGTTCCTGTAAAGA+GGG 0.535430 7_3:-74943927 None:intergenic
GTTCATGTTGATCTTGTGAC+GGG 0.537235 7_3:+74947483 Msa1123940:three_prime_UTR
CATTGAGCGGAGGGTACTCA+TGG 0.539242 7_3:-74945222 None:intergenic
AATTCAACTCCTACTAAGCC+GGG 0.541175 7_3:+74946815 Msa1123940:CDS
ACCATATAACTTGGAACTGA+TGG 0.542002 7_3:-74946998 None:intergenic
TTGGTGGGATCCACAAACAT+TGG 0.547737 7_3:-74946569 None:intergenic
TTGTAATTTCAGCAACATGA+TGG 0.550799 7_3:-74944746 None:intergenic
TATATAATAATCAGAGTGAA+AGG 0.551583 7_3:+74947236 Msa1123940:three_prime_UTR
ATGGCGGTTTCTACCTTCGG+TGG 0.551866 7_3:-74947172 None:intergenic
TGAGTCGGCACCATATAACT+TGG 0.553119 7_3:-74947007 None:intergenic
GATCCCACCAATCCTACTTG+GGG 0.554025 7_3:+74946581 Msa1123940:CDS
CATTCTGTGTTTCATCAACA+AGG 0.560883 7_3:+74947529 Msa1123940:three_prime_UTR
ATTCTTTACCATTGACCTTG+AGG 0.561425 7_3:+74947450 Msa1123940:three_prime_UTR
ATCATCTCTAACTGATGACC+CGG 0.566819 7_3:-74946957 None:intergenic
TACAACTGTGGTGGATGTCG+AGG 0.573197 7_3:+74944764 Msa1123940:CDS
GAGCATTGCGGGCTTTAAGA+GGG 0.574907 7_3:+74945150 Msa1123940:CDS
GGTTCATGTTGATCTTGTGA+CGG 0.575573 7_3:+74947482 Msa1123940:three_prime_UTR
GCTGTATCGATTTCTACAGA+GGG 0.577428 7_3:-74944663 None:intergenic
TCTTTACCATTGACCTTGAG+GGG 0.579969 7_3:+74947452 Msa1123940:three_prime_UTR
AGGAACATGTATTAAAGGTG+TGG 0.580118 7_3:+74943937 Msa1123940:five_prime_UTR
TAACGTCTGCATTGAGCGGA+GGG 0.581741 7_3:-74945231 None:intergenic
AATTTAATATCTTCTGGCGG+AGG 0.588204 7_3:-74944696 None:intergenic
AAGAAGATAATGGGGAAGAA+GGG 0.590179 7_3:+74944450 Msa1123940:exon
AGATTGAAAACATTGATGGA+AGG 0.590382 7_3:+74945179 Msa1123940:CDS
ACTGAAGAAGGCGAGTCCAA+AGG 0.594202 7_3:+74946859 Msa1123940:CDS
ATCCCACCAATCCTACTTGG+GGG 0.597567 7_3:+74946582 Msa1123940:CDS
AGTTGCTAGGAAACTGAAGA+AGG 0.598507 7_3:+74946847 Msa1123940:CDS
CTGGCCACACCATTGCTCAC+AGG 0.598982 7_3:-74947208 None:intergenic
TGCTGTATCGATTTCTACAG+AGG 0.603089 7_3:-74944664 None:intergenic
TGGTAAACCAAAGGATGAAG+TGG 0.603448 7_3:+74944851 Msa1123940:CDS
ATCTCAGATTCGTTCTAGGA+GGG 0.616350 7_3:+74945265 Msa1123940:CDS
AATCTCAGATTCGTTCTAGG+AGG 0.623684 7_3:+74945264 Msa1123940:CDS
GATTGAAAACATTGATGGAA+GGG 0.623713 7_3:+74945180 Msa1123940:CDS
CTAACGTCTGCATTGAGCGG+AGG 0.624271 7_3:-74945232 None:intergenic
TGGCAAGTGTACAGTCAGAT+CGG 0.624328 7_3:+74946915 Msa1123940:CDS
CTAGCTTTCGCAGATTGAGT+CGG 0.624424 7_3:-74947022 None:intergenic
CTTTACCATTGACCTTGAGG+GGG 0.624712 7_3:+74947453 Msa1123940:three_prime_UTR
GGATGATGACTCCAAAAGCA+TGG 0.624895 7_3:+74946895 Msa1123940:CDS
CATGTTGATCTTGTGACGGG+AGG 0.627453 7_3:+74947486 Msa1123940:three_prime_UTR
GTTGAATTGGACTGAAAGCT+GGG 0.631003 7_3:-74946800 None:intergenic
AAGGGAGCTTGAAACCATGC+GGG 0.632453 7_3:+74945343 Msa1123940:CDS
GCCCGACCTTGGGAGAGCCG+TGG 0.632629 7_3:+74946632 Msa1123940:CDS
ACCCGGCAATAGAGTGCCTG+CGG 0.633713 7_3:-74946940 None:intergenic
GAAAGAAACCCATACCCGCA+TGG 0.636453 7_3:-74945357 None:intergenic
TCTTCTGGCGGAGGAAGAGG+CGG 0.642359 7_3:-74944687 None:intergenic
AGGTAACTCTGCATTTATGG+CGG 0.642380 7_3:-74947188 None:intergenic
GCGTCATTCAGGTCCACCGA+AGG 0.644936 7_3:+74947159 Msa1123940:CDS
TATGCGAAGAGAAAGAGCAC+TGG 0.647271 7_3:+74945557 Msa1123940:CDS
TGCTGAAATTACAACTGTGG+TGG 0.649384 7_3:+74944755 Msa1123940:CDS
GGAATGCCAAGAAGATAATG+GGG 0.650329 7_3:+74944442 Msa1123940:exon
TCGAGCCGCAGCATTATAGG+TGG 0.650702 7_3:+74946698 Msa1123940:CDS
AAAATGGCAAACAAGAAAAG+GGG 0.651135 7_3:+74947080 Msa1123940:CDS
TTTAGGCAAGAAGAGCATTG+CGG 0.651340 7_3:+74945138 Msa1123940:intron
TTTCTCCACCTATAATGCTG+CGG 0.652765 7_3:-74946703 None:intergenic
GTTAATTTAATATCTTCTGG+CGG 0.660808 7_3:-74944699 None:intergenic
GTTCTTTATCAACAACGCCA+CGG 0.668044 7_3:-74946649 None:intergenic
CAAGGGAGCTTGAAACCATG+CGG 0.673697 7_3:+74945342 Msa1123940:CDS
GAGCTGGATAGAACGATGGA+TGG 0.675083 7_3:+74946607 Msa1123940:CDS
GGTGGAGCTGGATAGAACGA+TGG 0.677630 7_3:+74946603 Msa1123940:CDS
GCTCTTACAGAAGCACGCAA+GGG 0.686718 7_3:+74945325 Msa1123940:CDS
GAGCTAACGTCTGCATTGAG+CGG 0.689445 7_3:-74945235 None:intergenic
GCAGAGTTACCTGTGAGCAA+TGG 0.694985 7_3:+74947199 Msa1123940:CDS
TCTGTGTTTCATCAACAAGG+AGG 0.705680 7_3:+74947532 Msa1123940:three_prime_UTR
CTGTATCGATTTCTACAGAG+GGG 0.722657 7_3:-74944662 None:intergenic
GTTACCTGTGAGCAATGGTG+TGG 0.726390 7_3:+74947204 Msa1123940:CDS
TGTTGCTGAAATTACAACTG+TGG 0.743093 7_3:+74944752 Msa1123940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAATCAATTTTTTCAA+TGG - chr7_3:74944271-74944290 None:intergenic 10.0%
!!! AAAATATTTTCAAACTAAAT+TGG - chr7_3:74946017-74946036 None:intergenic 10.0%
!! AAAATACAAATTGATTAATA+TGG - chr7_3:74947423-74947442 None:intergenic 10.0%
!!! GCATTTTAAAAAAATGTTAA+AGG - chr7_3:74945382-74945401 None:intergenic 15.0%
!!! TGAATTTTTTTTAGATGAAT+TGG + chr7_3:74945644-74945663 Msa1123940:intron 15.0%
!!! TTAAACATTTGTTATAGAAA+GGG - chr7_3:74946149-74946168 None:intergenic 15.0%
!!! TTTAAACATTTGTTATAGAA+AGG - chr7_3:74946150-74946169 None:intergenic 15.0%
!! CAATTCATTCAAATTATAAT+AGG - chr7_3:74946463-74946482 None:intergenic 15.0%
!!! AAAAGTATTAATGAAATGTT+TGG - chr7_3:74947373-74947392 None:intergenic 15.0%
!!! TTTCATTAATACTTTTGATT+TGG + chr7_3:74947377-74947396 Msa1123940:three_prime_UTR 15.0%
!!! TTCATTAATACTTTTGATTT+GGG + chr7_3:74947378-74947397 Msa1123940:three_prime_UTR 15.0%
!! TTTATGAAAAAAAGAGAAAA+AGG - chr7_3:74947579-74947598 None:intergenic 15.0%
!! ATTCAATCTAAATCAAAGTT+GGG - chr7_3:74944155-74944174 None:intergenic 20.0%
!! AATTCAATCTAAATCAAAGT+TGG - chr7_3:74944156-74944175 None:intergenic 20.0%
!! TAATACATACTACTACTAAT+AGG + chr7_3:74944179-74944198 Msa1123940:intron 20.0%
!! AATACATACTACTACTAATA+GGG + chr7_3:74944180-74944199 Msa1123940:intron 20.0%
!! TTAAAACATGCTAATATCAA+TGG + chr7_3:74944309-74944328 Msa1123940:intron 20.0%
!! TGATATAAAGGATCAAATTA+AGG + chr7_3:74944421-74944440 Msa1123940:intron 20.0%
!! CAAGTAAATCAAAAAAGAAA+TGG + chr7_3:74944610-74944629 Msa1123940:CDS 20.0%
!! AAATCAAAAAAGAAATGGTT+TGG + chr7_3:74944615-74944634 Msa1123940:CDS 20.0%
!! AATCAAAAAAGAAATGGTTT+GGG + chr7_3:74944616-74944635 Msa1123940:CDS 20.0%
!! TCAGTTAATTTAATATCTTC+TGG - chr7_3:74944705-74944724 None:intergenic 20.0%
!!! TATCATTTTGAAATACCTTT+CGG + chr7_3:74945093-74945112 Msa1123940:intron 20.0%
!!! ACTGTCTTTTAAAATCATTT+AGG + chr7_3:74945121-74945140 Msa1123940:intron 20.0%
!!! AATTTTTATTTTCCGATCAA+TGG - chr7_3:74945800-74945819 None:intergenic 20.0%
!!! CTAAATTGGTTATAAGTTTT+AGG - chr7_3:74946003-74946022 None:intergenic 20.0%
!! CTATATAGATCTTCAAAAAT+AGG - chr7_3:74946095-74946114 None:intergenic 20.0%
!! AACTGAATTAAGCATATTAT+TGG - chr7_3:74946364-74946383 None:intergenic 20.0%
!! CTGATTATTATATAATCAAC+TGG - chr7_3:74947230-74947249 None:intergenic 20.0%
!! TATATAATAATCAGAGTGAA+AGG + chr7_3:74947236-74947255 Msa1123940:three_prime_UTR 20.0%
!!! TCATTAATACTTTTGATTTG+GGG + chr7_3:74947379-74947398 Msa1123940:three_prime_UTR 20.0%
! TTTACAGGAACATGTATTAA+AGG + chr7_3:74943932-74943951 Msa1123940:five_prime_UTR 25.0%
!!! CTTTTTGTTTAAACACGAAT+TGG + chr7_3:74943998-74944017 Msa1123940:five_prime_UTR 25.0%
! AAATTTATCTCTCTTGAAGA+AGG - chr7_3:74944072-74944091 None:intergenic 25.0%
!! TCCTTCTTTTTGTGATATAA+AGG + chr7_3:74944409-74944428 Msa1123940:intron 25.0%
! TCCTTTATATCACAAAAAGA+AGG - chr7_3:74944413-74944432 None:intergenic 25.0%
! GTTAATTTAATATCTTCTGG+CGG - chr7_3:74944702-74944721 None:intergenic 25.0%
! TCTATATATGCAGAATAATG+AGG + chr7_3:74945032-74945051 Msa1123940:intron 25.0%
!! TTATTTGACTTCGTTTGTAA+TGG + chr7_3:74945427-74945446 Msa1123940:intron 25.0%
! CCAATCTATAATGAAAATTC+GGG - chr7_3:74945465-74945484 None:intergenic 25.0%
! CCCAATCTATAATGAAAATT+CGG - chr7_3:74945466-74945485 None:intergenic 25.0%
!! CCGAATTTTCATTATAGATT+GGG + chr7_3:74945463-74945482 Msa1123940:intron 25.0%
!! CGAATTTTCATTATAGATTG+GGG + chr7_3:74945464-74945483 Msa1123940:intron 25.0%
!! CAATTTGTTCTTTAGATTGT+AGG - chr7_3:74945506-74945525 None:intergenic 25.0%
! TTTGAAGATCTATATAGAAG+AGG + chr7_3:74946098-74946117 Msa1123940:intron 25.0%
! ATGACAACTGAAAATAACTT+AGG + chr7_3:74946220-74946239 Msa1123940:intron 25.0%
! ATTATGCAAAAAAATCAACG+TGG - chr7_3:74946333-74946352 None:intergenic 25.0%
!! TTTTTGCCAATAGAGATATT+TGG + chr7_3:74946405-74946424 Msa1123940:intron 25.0%
! GTTTGGATACACATAAAAAT+AGG - chr7_3:74947356-74947375 None:intergenic 25.0%
AATACATGTTCCTGTAAAGA+GGG - chr7_3:74943930-74943949 None:intergenic 30.0%
TAATACATGTTCCTGTAAAG+AGG - chr7_3:74943931-74943950 None:intergenic 30.0%
!!! TTAGCATGTTTTAATCTGTG+TGG - chr7_3:74944303-74944322 None:intergenic 30.0%
! ATTTTCATACCTTTGAGTCA+GGG - chr7_3:74944509-74944528 None:intergenic 30.0%
! TATTTTCATACCTTTGAGTC+AGG - chr7_3:74944510-74944529 None:intergenic 30.0%
TTGTAATTTCAGCAACATGA+TGG - chr7_3:74944749-74944768 None:intergenic 30.0%
! TCAAGATTCAAACAGCTTTT+CGG + chr7_3:74944880-74944899 Msa1123940:CDS 30.0%
GCGAACAAATTTGAAAATGA+GGG - chr7_3:74944933-74944952 None:intergenic 30.0%
AGCGAACAAATTTGAAAATG+AGG - chr7_3:74944934-74944953 None:intergenic 30.0%
AGATTGAAAACATTGATGGA+AGG + chr7_3:74945179-74945198 Msa1123940:CDS 30.0%
GATTGAAAACATTGATGGAA+GGG + chr7_3:74945180-74945199 Msa1123940:CDS 30.0%
AAATGCTAATCTCTCAACAT+TGG + chr7_3:74945396-74945415 Msa1123940:intron 30.0%
! CCCGAATTTTCATTATAGAT+TGG + chr7_3:74945462-74945481 Msa1123940:intron 30.0%
! ATTTTCATTATAGATTGGGG+AGG + chr7_3:74945467-74945486 Msa1123940:intron 30.0%
TAGGAAACAAAAGTGAAGAA+AGG - chr7_3:74946076-74946095 None:intergenic 30.0%
CACTATCCAAATATCTCTAT+TGG - chr7_3:74946414-74946433 None:intergenic 30.0%
CAATAGAGATATTTGGATAG+TGG + chr7_3:74946412-74946431 Msa1123940:intron 30.0%
ATAGGACATCACATAATATG+CGG - chr7_3:74946445-74946464 None:intergenic 30.0%
ATCTATGAATCCAATGTTTG+TGG + chr7_3:74946559-74946578 Msa1123940:CDS 30.0%
AGTCCATTAGCAAAAGAAAA+TGG + chr7_3:74947064-74947083 Msa1123940:CDS 30.0%
!!! TTGCCATTTTCTTTTGCTAA+TGG - chr7_3:74947070-74947089 None:intergenic 30.0%
AGAAAATGGCAAACAAGAAA+AGG + chr7_3:74947078-74947097 Msa1123940:CDS 30.0%
GAAAATGGCAAACAAGAAAA+GGG + chr7_3:74947079-74947098 Msa1123940:CDS 30.0%
AAAATGGCAAACAAGAAAAG+GGG + chr7_3:74947080-74947099 Msa1123940:CDS 30.0%
AGGACAGAAATCATTAAAGT+AGG + chr7_3:74947256-74947275 Msa1123940:three_prime_UTR 30.0%
GAAACTCTTGATTCTAAATG+TGG + chr7_3:74947608-74947627 Msa1123940:three_prime_UTR 30.0%
! TCTGATTTTTCCCTCTTTAC+AGG + chr7_3:74943917-74943936 Msa1123940:five_prime_UTR 35.0%
AGGAACATGTATTAAAGGTG+TGG + chr7_3:74943937-74943956 Msa1123940:five_prime_UTR 35.0%
! CATGTATTAAAGGTGTGGTT+TGG + chr7_3:74943942-74943961 Msa1123940:five_prime_UTR 35.0%
!! TATTAAAGGTGTGGTTTGGT+TGG + chr7_3:74943946-74943965 Msa1123940:five_prime_UTR 35.0%
CATACTACTACTAATAGGGA+AGG + chr7_3:74944184-74944203 Msa1123940:intron 35.0%
ACTACTAATAGGGAAGGATT+AGG + chr7_3:74944190-74944209 Msa1123940:intron 35.0%
AAGGAATGCCAAGAAGATAA+TGG + chr7_3:74944440-74944459 Msa1123940:exon 35.0%
AGGAATGCCAAGAAGATAAT+GGG + chr7_3:74944441-74944460 Msa1123940:exon 35.0%
!! AAGAAGATAATGGGGAAGAA+GGG + chr7_3:74944450-74944469 Msa1123940:exon 35.0%
AATTTAATATCTTCTGGCGG+AGG - chr7_3:74944699-74944718 None:intergenic 35.0%
TGTTGCTGAAATTACAACTG+TGG + chr7_3:74944752-74944771 Msa1123940:CDS 35.0%
! TCATTTTGCTGGTAAACCAA+AGG + chr7_3:74944842-74944861 Msa1123940:CDS 35.0%
! CAAGATTCAAACAGCTTTTC+GGG + chr7_3:74944881-74944900 Msa1123940:CDS 35.0%
! AAGATTCAAACAGCTTTTCG+GGG + chr7_3:74944882-74944901 Msa1123940:CDS 35.0%
!! CAGAATAATGAGGCTTTAAG+AGG + chr7_3:74945042-74945061 Msa1123940:intron 35.0%
AAAAGACAGTTTAGTCCGAA+AGG - chr7_3:74945111-74945130 None:intergenic 35.0%
GGTGAGATTGAAAACATTGA+TGG + chr7_3:74945175-74945194 Msa1123940:CDS 35.0%
AAACGAAGTCAAATAAGCGT+TGG - chr7_3:74945423-74945442 None:intergenic 35.0%
ATTATAGATTGGGGAGGAAT+GGG + chr7_3:74945473-74945492 Msa1123940:intron 35.0%
CTCATACTTGCTCAGTAATT+TGG - chr7_3:74945532-74945551 None:intergenic 35.0%
CAAATTACTGAGCAAGTATG+AGG + chr7_3:74945530-74945549 Msa1123940:CDS 35.0%
CTTGTTAACTTAGATATGCG+AGG + chr7_3:74945613-74945632 Msa1123940:intron 35.0%
CAGAACATAACATGAAAGCT+TGG - chr7_3:74945721-74945740 None:intergenic 35.0%
CAAGCTTTCATGTTATGTTC+TGG + chr7_3:74945719-74945738 Msa1123940:intron 35.0%
ATATGTCAACGACCATTGAT+CGG + chr7_3:74945785-74945804 Msa1123940:intron 35.0%
AACTGCTGATGAGAAAATCA+CGG - chr7_3:74945883-74945902 None:intergenic 35.0%
CAACAACTTCAAGTAGGATA+AGG - chr7_3:74945971-74945990 None:intergenic 35.0%
AAAGAGCAACAACTTCAAGT+AGG - chr7_3:74945977-74945996 None:intergenic 35.0%
! GTGAAGAAAGGTGACAATTT+TGG - chr7_3:74946064-74946083 None:intergenic 35.0%
TAGAAGAGGATGAAAACAAG+AGG + chr7_3:74946112-74946131 Msa1123940:intron 35.0%
AGAAGAGGATGAAAACAAGA+GGG + chr7_3:74946113-74946132 Msa1123940:intron 35.0%
GAAGATAGTGACTACATGAA+AGG - chr7_3:74946264-74946283 None:intergenic 35.0%
AAAAAAATCAACGTGGCAGT+GGG - chr7_3:74946326-74946345 None:intergenic 35.0%
AATGTATTTCAGAGTTGAGC+TGG - chr7_3:74946751-74946770 None:intergenic 35.0%
TCCATCAGTTCCAAGTTATA+TGG + chr7_3:74946997-74947016 Msa1123940:CDS 35.0%
ACCATATAACTTGGAACTGA+TGG - chr7_3:74947001-74947020 None:intergenic 35.0%
ATTCTTTACCATTGACCTTG+AGG + chr7_3:74947450-74947469 Msa1123940:three_prime_UTR 35.0%
TTCTTTACCATTGACCTTGA+GGG + chr7_3:74947451-74947470 Msa1123940:three_prime_UTR 35.0%
! CTTGTTGATGAAACACAGAA+TGG - chr7_3:74947531-74947550 None:intergenic 35.0%
CATTCTGTGTTTCATCAACA+AGG + chr7_3:74947529-74947548 Msa1123940:three_prime_UTR 35.0%
! TCTCTTGAAGAAGGTGCAAT+GGG - chr7_3:74944063-74944082 None:intergenic 40.0%
GGAAGGATTAGGAGTTTGAA+TGG + chr7_3:74944201-74944220 Msa1123940:intron 40.0%
GGAATGCCAAGAAGATAATG+GGG + chr7_3:74944442-74944461 Msa1123940:exon 40.0%
CTTCTTCCCCATTATCTTCT+TGG - chr7_3:74944451-74944470 None:intergenic 40.0%
!! CAAGAAGATAATGGGGAAGA+AGG + chr7_3:74944449-74944468 Msa1123940:exon 40.0%
TAATGGGGAAGAAGGGAAAT+TGG + chr7_3:74944457-74944476 Msa1123940:exon 40.0%
!! CTGTATCGATTTCTACAGAG+GGG - chr7_3:74944665-74944684 None:intergenic 40.0%
!! GCTGTATCGATTTCTACAGA+GGG - chr7_3:74944666-74944685 None:intergenic 40.0%
!! TGCTGTATCGATTTCTACAG+AGG - chr7_3:74944667-74944686 None:intergenic 40.0%
TGCTGAAATTACAACTGTGG+TGG + chr7_3:74944755-74944774 Msa1123940:CDS 40.0%
TGGTAAACCAAAGGATGAAG+TGG + chr7_3:74944851-74944870 Msa1123940:CDS 40.0%
!! TTTAGGCAAGAAGAGCATTG+CGG + chr7_3:74945138-74945157 Msa1123940:intron 40.0%
!! ATGGCTTGGCGTTTTACAAT+CGG - chr7_3:74945206-74945225 None:intergenic 40.0%
TGCAATCTCAGATTCGTTCT+AGG + chr7_3:74945261-74945280 Msa1123940:CDS 40.0%
! AATCTCAGATTCGTTCTAGG+AGG + chr7_3:74945264-74945283 Msa1123940:CDS 40.0%
!! ATCTCAGATTCGTTCTAGGA+GGG + chr7_3:74945265-74945284 Msa1123940:CDS 40.0%
CAGAATGTTAGAGGAGAATC+AGG + chr7_3:74945289-74945308 Msa1123940:CDS 40.0%
CATTATAGATTGGGGAGGAA+TGG + chr7_3:74945472-74945491 Msa1123940:intron 40.0%
ACTGCTGATGAGAAAATCAC+GGG - chr7_3:74945882-74945901 None:intergenic 40.0%
GAAGAGGATGAAAACAAGAG+GGG + chr7_3:74946114-74946133 Msa1123940:intron 40.0%
AAGAGGATGAAAACAAGAGG+GGG + chr7_3:74946115-74946134 Msa1123940:intron 40.0%
AGAGGTTTAAGCAGAGGAAA+TGG - chr7_3:74946291-74946310 None:intergenic 40.0%
CAAAAAAATCAACGTGGCAG+TGG - chr7_3:74946327-74946346 None:intergenic 40.0%
GTTCTTTATCAACAACGCCA+CGG - chr7_3:74946652-74946671 None:intergenic 40.0%
TTTCTCCACCTATAATGCTG+CGG - chr7_3:74946706-74946725 None:intergenic 40.0%
TTTCAGAGTTGAGCTGGAAA+CGG - chr7_3:74946745-74946764 None:intergenic 40.0%
GTTGAATTGGACTGAAAGCT+GGG - chr7_3:74946803-74946822 None:intergenic 40.0%
AGTTGAATTGGACTGAAAGC+TGG - chr7_3:74946804-74946823 None:intergenic 40.0%
CAATTCAACTCCTACTAAGC+CGG + chr7_3:74946814-74946833 Msa1123940:CDS 40.0%
AATTCAACTCCTACTAAGCC+GGG + chr7_3:74946815-74946834 Msa1123940:CDS 40.0%
AGTTGCTAGGAAACTGAAGA+AGG + chr7_3:74946847-74946866 Msa1123940:CDS 40.0%
ATCATCTCTAACTGATGACC+CGG - chr7_3:74946960-74946979 None:intergenic 40.0%
AAACAAGAAAAGGGGTCCTT+TGG + chr7_3:74947088-74947107 Msa1123940:CDS 40.0%
TTTATGGCGGTTTCTACCTT+CGG - chr7_3:74947178-74947197 None:intergenic 40.0%
AGGTAACTCTGCATTTATGG+CGG - chr7_3:74947191-74947210 None:intergenic 40.0%
CACAGGTAACTCTGCATTTA+TGG - chr7_3:74947194-74947213 None:intergenic 40.0%
TCTTTACCATTGACCTTGAG+GGG + chr7_3:74947452-74947471 Msa1123940:three_prime_UTR 40.0%
GGTTCATGTTGATCTTGTGA+CGG + chr7_3:74947482-74947501 Msa1123940:three_prime_UTR 40.0%
GTTCATGTTGATCTTGTGAC+GGG + chr7_3:74947483-74947502 Msa1123940:three_prime_UTR 40.0%
TCTGTGTTTCATCAACAAGG+AGG + chr7_3:74947532-74947551 Msa1123940:three_prime_UTR 40.0%
! CTCTCTTGAAGAAGGTGCAA+TGG - chr7_3:74944064-74944083 None:intergenic 45.0%
! GCTGCAGTTTCTCATTTTGC+TGG + chr7_3:74944831-74944850 Msa1123940:CDS 45.0%
! ATTGCTGCCACTTCATCCTT+TGG - chr7_3:74944861-74944880 None:intergenic 45.0%
!! AACAGCTTTTCGGGGATACT+TGG + chr7_3:74944890-74944909 Msa1123940:CDS 45.0%
!! TTAGGCAAGAAGAGCATTGC+GGG + chr7_3:74945139-74945158 Msa1123940:intron 45.0%
TAGGAGGGTCAGAATGTTAG+AGG + chr7_3:74945280-74945299 Msa1123940:CDS 45.0%
! TATGCGAAGAGAAAGAGCAC+TGG + chr7_3:74945557-74945576 Msa1123940:CDS 45.0%
GGCTTATGCATTCACTCATC+AGG + chr7_3:74945578-74945597 Msa1123940:CDS 45.0%
TTGGTGGGATCCACAAACAT+TGG - chr7_3:74946572-74946591 None:intergenic 45.0%
TTCAGAGTTGAGCTGGAAAC+GGG - chr7_3:74946744-74946763 None:intergenic 45.0%
CGGCTTAGTAGGAGTTGAAT+TGG - chr7_3:74946816-74946835 None:intergenic 45.0%
TCCAAAGGGAAGTTGGGTTA+TGG + chr7_3:74946874-74946893 Msa1123940:CDS 45.0%
TCCATAACCCAACTTCCCTT+TGG - chr7_3:74946878-74946897 None:intergenic 45.0%
GGATGATGACTCCAAAAGCA+TGG + chr7_3:74946895-74946914 Msa1123940:CDS 45.0%
! CTGTACACTTGCCATGCTTT+TGG - chr7_3:74946909-74946928 None:intergenic 45.0%
TGGCAAGTGTACAGTCAGAT+CGG + chr7_3:74946915-74946934 Msa1123940:CDS 45.0%
TGAGTCGGCACCATATAACT+TGG - chr7_3:74947010-74947029 None:intergenic 45.0%
! CTAGCTTTCGCAGATTGAGT+CGG - chr7_3:74947025-74947044 None:intergenic 45.0%
!! GAAAAAGCGCCTTTCTTACC+CGG + chr7_3:74947117-74947136 Msa1123940:CDS 45.0%
CTTTACCATTGACCTTGAGG+GGG + chr7_3:74947453-74947472 Msa1123940:three_prime_UTR 45.0%
AATTTCCCCCTCAAGGTCAA+TGG - chr7_3:74947461-74947480 None:intergenic 45.0%
TTGACCTTGAGGGGGAAATT+TGG + chr7_3:74947461-74947480 Msa1123940:three_prime_UTR 45.0%
TGAACCAAATTTCCCCCTCA+AGG - chr7_3:74947468-74947487 None:intergenic 45.0%
!!! ATTTTAATTATAATTACAAA+AGG - chr7_3:74946194-74946213 None:intergenic 5.0%
ATATCTTCTGGCGGAGGAAG+AGG - chr7_3:74944693-74944712 None:intergenic 50.0%
!! TACAACTGTGGTGGATGTCG+AGG + chr7_3:74944764-74944783 Msa1123940:CDS 50.0%
GCTGTCTGAACAGAACGAAC+AGG - chr7_3:74944792-74944811 None:intergenic 50.0%
!! AGAGCATTGCGGGCTTTAAG+AGG + chr7_3:74945149-74945168 Msa1123940:CDS 50.0%
!! GAGCATTGCGGGCTTTAAGA+GGG + chr7_3:74945150-74945169 Msa1123940:CDS 50.0%
TAACGTCTGCATTGAGCGGA+GGG - chr7_3:74945234-74945253 None:intergenic 50.0%
GAGCTAACGTCTGCATTGAG+CGG - chr7_3:74945238-74945257 None:intergenic 50.0%
! AGCTCTTACAGAAGCACGCA+AGG + chr7_3:74945324-74945343 Msa1123940:CDS 50.0%
! GCTCTTACAGAAGCACGCAA+GGG + chr7_3:74945325-74945344 Msa1123940:CDS 50.0%
CAAGGGAGCTTGAAACCATG+CGG + chr7_3:74945342-74945361 Msa1123940:CDS 50.0%
AAGGGAGCTTGAAACCATGC+GGG + chr7_3:74945343-74945362 Msa1123940:CDS 50.0%
AGCTTGAAACCATGCGGGTA+TGG + chr7_3:74945348-74945367 Msa1123940:intron 50.0%
GCTTGAAACCATGCGGGTAT+GGG + chr7_3:74945349-74945368 Msa1123940:intron 50.0%
GAAAGAAACCCATACCCGCA+TGG - chr7_3:74945360-74945379 None:intergenic 50.0%
GGTTGCAGAGGTTTAAGCAG+AGG - chr7_3:74946297-74946316 None:intergenic 50.0%
AATCAACGTGGCAGTGGGAA+AGG - chr7_3:74946321-74946340 None:intergenic 50.0%
TGGATCCCACCAATCCTACT+TGG + chr7_3:74946579-74946598 Msa1123940:CDS 50.0%
GGATCCCACCAATCCTACTT+GGG + chr7_3:74946580-74946599 Msa1123940:CDS 50.0%
GATCCCACCAATCCTACTTG+GGG + chr7_3:74946581-74946600 Msa1123940:CDS 50.0%
ATCCCACCAATCCTACTTGG+GGG + chr7_3:74946582-74946601 Msa1123940:CDS 50.0%
GAGCTGGATAGAACGATGGA+TGG + chr7_3:74946607-74946626 Msa1123940:CDS 50.0%
AGTTCGAGCCGCAGCATTAT+AGG + chr7_3:74946695-74946714 Msa1123940:CDS 50.0%
CTAGCAACTGAAGCAGAACC+CGG - chr7_3:74946836-74946855 None:intergenic 50.0%
ACTGAAGAAGGCGAGTCCAA+AGG + chr7_3:74946859-74946878 Msa1123940:CDS 50.0%
CTGAAGAAGGCGAGTCCAAA+GGG + chr7_3:74946860-74946879 Msa1123940:CDS 50.0%
CGACTCAATCTGCGAAAGCT+AGG + chr7_3:74947023-74947042 Msa1123940:CDS 50.0%
!!! GCGCTTTTTCGCAGTTCCAA+AGG - chr7_3:74947107-74947126 None:intergenic 50.0%
GCAGAGTTACCTGTGAGCAA+TGG + chr7_3:74947199-74947218 Msa1123940:CDS 50.0%
GTTACCTGTGAGCAATGGTG+TGG + chr7_3:74947204-74947223 Msa1123940:CDS 50.0%
! CATGTTGATCTTGTGACGGG+AGG + chr7_3:74947486-74947505 Msa1123940:three_prime_UTR 50.0%
AGCTCTCAGCCCTGACTCAA+AGG + chr7_3:74944497-74944516 Msa1123940:CDS 55.0%
!! ATTGCGGGCTTTAAGAGGGC+TGG + chr7_3:74945154-74945173 Msa1123940:CDS 55.0%
!! CATTGAGCGGAGGGTACTCA+TGG - chr7_3:74945225-74945244 None:intergenic 55.0%
CTAACGTCTGCATTGAGCGG+AGG - chr7_3:74945235-74945254 None:intergenic 55.0%
AGTGGGAAAGGAGGTTGCAG+AGG - chr7_3:74946309-74946328 None:intergenic 55.0%
! CACCCCCAAGTAGGATTGGT+GGG - chr7_3:74946587-74946606 None:intergenic 55.0%
GGTGGAGCTGGATAGAACGA+TGG + chr7_3:74946603-74946622 Msa1123940:CDS 55.0%
TCGAGCCGCAGCATTATAGG+TGG + chr7_3:74946698-74946717 Msa1123940:CDS 55.0%
!!! CCAGGATTTTGGCTCGCTAC+TGG - chr7_3:74946776-74946795 None:intergenic 55.0%
CCAGTAGCGAGCCAAAATCC+TGG + chr7_3:74946773-74946792 Msa1123940:CDS 55.0%
! AGCTGGGTGAGCCAGGATTT+TGG - chr7_3:74946787-74946806 None:intergenic 55.0%
GAAGCAGAACCCGGCTTAGT+AGG - chr7_3:74946827-74946846 None:intergenic 55.0%
CGGGTTCTGCTTCAGTTGCT+AGG + chr7_3:74946834-74946853 Msa1123940:CDS 55.0%
AGGCGAGTCCAAAGGGAAGT+TGG + chr7_3:74946867-74946886 Msa1123940:CDS 55.0%
GGCGAGTCCAAAGGGAAGTT+GGG + chr7_3:74946868-74946887 Msa1123940:CDS 55.0%
! TACAGTCAGATCGGTTCCGC+AGG + chr7_3:74946924-74946943 Msa1123940:CDS 55.0%
TTCCGCAGGCACTCTATTGC+CGG + chr7_3:74946938-74946957 Msa1123940:CDS 55.0%
ATGGCGGTTTCTACCTTCGG+TGG - chr7_3:74947175-74947194 None:intergenic 55.0%
TCTTCTGGCGGAGGAAGAGG+CGG - chr7_3:74944690-74944709 None:intergenic 60.0%
!! AGCGGAGGGTACTCATGGCT+TGG - chr7_3:74945220-74945239 None:intergenic 60.0%
CAACGTGGCAGTGGGAAAGG+AGG - chr7_3:74946318-74946337 None:intergenic 60.0%
CCACCCCCAAGTAGGATTGG+TGG - chr7_3:74946588-74946607 None:intergenic 60.0%
CCACCAATCCTACTTGGGGG+TGG + chr7_3:74946585-74946604 Msa1123940:CDS 60.0%
GCTCCACCCCCAAGTAGGAT+TGG - chr7_3:74946591-74946610 None:intergenic 60.0%
ATCCTACTTGGGGGTGGAGC+TGG + chr7_3:74946591-74946610 Msa1123940:CDS 60.0%
ATCCAGCTCCACCCCCAAGT+AGG - chr7_3:74946596-74946615 None:intergenic 60.0%
ATGGATGGCTGCCCGACCTT+GGG + chr7_3:74946622-74946641 Msa1123940:CDS 60.0%
GACTGAAAGCTGGGTGAGCC+AGG - chr7_3:74946794-74946813 None:intergenic 60.0%
TCCGCAGGCACTCTATTGCC+GGG + chr7_3:74946939-74946958 Msa1123940:CDS 60.0%
! ACCCGGCAATAGAGTGCCTG+CGG - chr7_3:74946943-74946962 None:intergenic 60.0%
CAGGCGAAGCCGGGTAAGAA+AGG - chr7_3:74947129-74947148 None:intergenic 60.0%
GGTGGACCTGAATGACGCCT+TGG - chr7_3:74947157-74947176 None:intergenic 60.0%
GCGTCATTCAGGTCCACCGA+AGG + chr7_3:74947159-74947178 Msa1123940:CDS 60.0%
CTGGCCACACCATTGCTCAC+AGG - chr7_3:74947211-74947230 None:intergenic 60.0%
GATGGATGGCTGCCCGACCT+TGG + chr7_3:74946621-74946640 Msa1123940:CDS 65.0%
ACAACGCCACGGCTCTCCCA+AGG - chr7_3:74946641-74946660 None:intergenic 65.0%
GAATGACGCCTTGGCCTCGC+AGG - chr7_3:74947148-74947167 None:intergenic 65.0%
! GCGAGGCCAAGGCGTCATTC+AGG + chr7_3:74947148-74947167 Msa1123940:CDS 65.0%
GCCACGGCTCTCCCAAGGTC+GGG - chr7_3:74946636-74946655 None:intergenic 70.0%
CGCCACGGCTCTCCCAAGGT+CGG - chr7_3:74946637-74946656 None:intergenic 70.0%
CTTACCCGGCTTCGCCTGCG+AGG + chr7_3:74947131-74947150 Msa1123940:CDS 70.0%
TTGGCCTCGCAGGCGAAGCC+GGG - chr7_3:74947138-74947157 None:intergenic 70.0%
CTTGGCCTCGCAGGCGAAGC+CGG - chr7_3:74947139-74947158 None:intergenic 70.0%
GCCCGACCTTGGGAGAGCCG+TGG + chr7_3:74946632-74946651 Msa1123940:CDS 75.0%
CGGCTTCGCCTGCGAGGCCA+AGG + chr7_3:74947137-74947156 Msa1123940:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74943875 74947725 74943875 ID=Msa1123940;Name=Msa1123940
chr7_3 mRNA 74943875 74947725 74943875 ID=Msa1123940-mRNA-1;Parent=Msa1123940;Name=Msa1123940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=206|1|1|1|0.8|0.66|6|491|468
chr7_3 exon 74943875 74944051 74943875 ID=Msa1123940-mRNA-1:exon:20068;Parent=Msa1123940-mRNA-1
chr7_3 exon 74944430 74944518 74944430 ID=Msa1123940-mRNA-1:exon:20069;Parent=Msa1123940-mRNA-1
chr7_3 exon 74944606 74944911 74944606 ID=Msa1123940-mRNA-1:exon:20070;Parent=Msa1123940-mRNA-1
chr7_3 exon 74945143 74945364 74945143 ID=Msa1123940-mRNA-1:exon:20071;Parent=Msa1123940-mRNA-1
chr7_3 exon 74945480 74945599 74945480 ID=Msa1123940-mRNA-1:exon:20072;Parent=Msa1123940-mRNA-1
chr7_3 exon 74946536 74947725 74946536 ID=Msa1123940-mRNA-1:exon:20073;Parent=Msa1123940-mRNA-1
chr7_3 five_prime_UTR 74943875 74944051 74943875 ID=Msa1123940-mRNA-1:five_prime_utr;Parent=Msa1123940-mRNA-1
chr7_3 five_prime_UTR 74944430 74944458 74944430 ID=Msa1123940-mRNA-1:five_prime_utr;Parent=Msa1123940-mRNA-1
chr7_3 CDS 74944459 74944518 74944459 ID=Msa1123940-mRNA-1:cds;Parent=Msa1123940-mRNA-1
chr7_3 CDS 74944606 74944911 74944606 ID=Msa1123940-mRNA-1:cds;Parent=Msa1123940-mRNA-1
chr7_3 CDS 74945143 74945364 74945143 ID=Msa1123940-mRNA-1:cds;Parent=Msa1123940-mRNA-1
chr7_3 CDS 74945480 74945599 74945480 ID=Msa1123940-mRNA-1:cds;Parent=Msa1123940-mRNA-1
chr7_3 CDS 74946536 74947234 74946536 ID=Msa1123940-mRNA-1:cds;Parent=Msa1123940-mRNA-1
chr7_3 three_prime_UTR 74947235 74947725 74947235 ID=Msa1123940-mRNA-1:three_prime_utr;Parent=Msa1123940-mRNA-1
Gene Sequence

>Msa1123940

ATGGGGAAGAAGGGAAATTGGTTTTCTACAGTGAAGAAAGCTCTCAGCCCTGACTCAAAGAAATCAAGTAAATCAAAAAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGACCCCTCTGTAGAAATCGATACAGCACCGCCTCTTCCTCCGCCAGAAGATATTAAATTAACTGATATTGAAAATCAAAACAATCACCATCATGTTGCTGAAATTACAACTGTGGTGGATGTCGAGGAACCTGTTCGTTCTGTTCAGACAGCAGTTGTTAAGACTCAAGCTGCTGCAGTTTCTCATTTTGCTGGTAAACCAAAGGATGAAGTGGCAGCAATCAAGATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGAGGGCTGGTGAGATTGAAAACATTGATGGAAGGGCCGATTGTAAAACGCCAAGCCATGAGTACCCTCCGCTCAATGCAGACGTTAGCTCGTGTGCAATCTCAGATTCGTTCTAGGAGGGTCAGAATGTTAGAGGAGAATCAGGCTTTACAGAGACAGCTCTTACAGAAGCACGCAAGGGAGCTTGAAACCATGCGGATTGGGGAGGAATGGGACGATAGCCTACAATCTAAAGAACAAATTGAAGCCAAATTACTGAGCAAGTATGAGGCTACTATGCGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTCGAAGAACTCGTCTAGATCTATGAATCCAATGTTTGTGGATCCCACCAATCCTACTTGGGGGTGGAGCTGGATAGAACGATGGATGGCTGCCCGACCTTGGGAGAGCCGTGGCGTTGTTGATAAAGAACTGAATGATCATTCATCTGTTAAAAGTTCGAGCCGCAGCATTATAGGTGGAGAAATCAGCAAATCATTTGCCCGTTTCCAGCTCAACTCTGAAATACATTCTCCAGTAGCGAGCCAAAATCCTGGCTCACCCAGCTTTCAGTCCAATTCAACTCCTACTAAGCCGGGTTCTGCTTCAGTTGCTAGGAAACTGAAGAAGGCGAGTCCAAAGGGAAGTTGGGTTATGGATGATGACTCCAAAAGCATGGCAAGTGTACAGTCAGATCGGTTCCGCAGGCACTCTATTGCCGGGTCATCAGTTAGAGATGATGAGAGTCTTGCTAGCTCTCCATCAGTTCCAAGTTATATGGTGCCGACTCAATCTGCGAAAGCTAGGTTGAGAACACAAAGTCAAAGTCCATTAGCAAAAGAAAATGGCAAACAAGAAAAGGGGTCCTTTGGAACTGCGAAAAAGCGCCTTTCTTACCCGGCTTCGCCTGCGAGGCCAAGGCGTCATTCAGGTCCACCGAAGGTAGAAACCGCCATAAATGCAGAGTTACCTGTGAGCAATGGTGTGGCCAGTTGA
Protein sequence

>Msa1123940

MGKKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQTSDPSVEIDTAPPLPPPEDIKLTDIENQNNHHHVAEITTVVDVEEPVRSVQTAVVKTQAAAVSHFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRVRMLEENQALQRQLLQKHARELETMRIGEEWDDSLQSKEQIEAKLLSKYEATMRRERALAYAFTHQQNSKNSSRSMNPMFVDPTNPTWGWSWIERWMAARPWESRGVVDKELNDHSSVKSSSRSIIGGEISKSFARFQLNSEIHSPVASQNPGSPSFQSNSTPTKPGSASVARKLKKASPKGSWVMDDDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKARLRTQSQSPLAKENGKQEKGSFGTAKKRLSYPASPARPRRHSGPPKVETAINAELPVSNGVAS*