AlfalfaGEDB | Msa1169380

M. sativa cultivar zhongmu-4 / Msa1169380

KEGG: K01537
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132
PFAM: PF00690.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169380	XP_024626304.1	98.963	1061	11	0	1	1061	1	1061	0.0	2162

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169380	sp\|Q9XES1\|ECA4_ARATH	80.000	1050	205	3	1	1050	1	1045	0.0	1727

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169380	A0A396H549	98.963	1061	11	0	1	1061	1	1061	0.0	2162

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0170130	Msa1169380	0.818434	1.964442e-52	-8.615850e-47
Msa0249360	Msa1169380	0.826874	2.134482e-54	-8.615850e-47
Msa0254260	Msa1169380	0.812597	3.912518e-51	-8.615850e-47
Msa0287850	Msa1169380	0.816072	6.677149e-52	-8.615850e-47
Msa0335360	Msa1169380	0.810942	8.967071e-51	-8.615850e-47
Msa0387140	Msa1169380	0.809494	1.840358e-50	-8.615850e-47
Msa0400420	Msa1169380	0.853272	2.667122e-61	-8.615850e-47
Msa0427700	Msa1169380	0.800529	1.381147e-48	-8.615850e-47
Msa0441600	Msa1169380	0.803304	3.715781e-49	-8.615850e-47
Msa0489120	Msa1169380	0.825166	5.437259e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169380	MtrunA17_Chr7g0263361	98.963	1061	11	0	1	1061	1	1061	0.0	2162
Msa1169380	MtrunA17_Chr8g0346461	66.127	1051	330	11	24	1059	12	1051	0.0	1397
Msa1169380	MtrunA17_Chr3g0134951	45.865	1040	480	23	25	1047	3	976	0.0	805
Msa1169380	MtrunA17_Chr6g0456201	32.454	872	467	25	38	873	102	887	7.19e-108	360
Msa1169380	MtrunA17_Chr4g0020551	32.360	856	465	23	28	855	40	809	9.02e-108	357
Msa1169380	MtrunA17_Chr5g0401211	30.237	1012	556	30	36	1033	125	1000	3.15e-107	358
Msa1169380	MtrunA17_Chr4g0054021	30.922	1009	549	32	36	1032	50	922	9.19e-107	355
Msa1169380	MtrunA17_Chr1g0173111	31.968	879	485	26	24	876	109	900	2.07e-106	357
Msa1169380	MtrunA17_Chr4g0002331	31.238	1034	543	36	31	1033	171	1067	1.14e-105	356
Msa1169380	MtrunA17_Chr2g0298871	29.942	1032	546	34	38	1033	165	1055	2.42e-103	349

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169380	AT1G07670.2	80.000	1050	205	3	1	1050	1	1045	0.0	1727
Msa1169380	AT1G07670.1	80.000	1050	205	3	1	1050	1	1045	0.0	1727
Msa1169380	AT1G07810.1	79.905	1050	206	3	1	1050	1	1045	0.0	1721
Msa1169380	AT4G00900.2	67.048	1050	324	10	24	1059	7	1048	0.0	1412
Msa1169380	AT4G00900.1	67.048	1050	324	10	24	1059	7	1048	0.0	1412
Msa1169380	AT1G10130.1	46.958	1052	476	21	26	1061	4	989	0.0	829
Msa1169380	AT3G57330.2	30.388	1030	545	34	36	1039	68	951	3.18e-103	347
Msa1169380	AT3G57330.1	30.553	1031	542	36	36	1039	123	1006	4.07e-103	348
Msa1169380	AT2G22950.1	32.602	911	500	29	38	927	126	943	4.07e-103	348
Msa1169380	AT4G37640.1	32.463	881	479	28	28	876	107	903	1.71e-101	343

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Find 298 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGATCGCAGAAATT+AGG	0.191309	7_4:+62372197	None:intergenic
AAAATGCAGCCCAAACGAAA+CGG	0.558522	7_4:+62366213	None:intergenic
AAACAAGATCGCAGAAATTA+GGG	0.381802	7_4:+62372198	None:intergenic
AAACCAATTTCCAAATGGAT+TGG	0.475355	7_4:+62371853	None:intergenic
AAAGAAGTCGCTGCTGGTTA+AGG	0.397823	7_4:-62369633	Msa1169380:intron
AAAGCCATTCATTGAAGCTC+AGG	0.417100	7_4:+62366143	None:intergenic
AAAGCTTATCTGAGACAGAC+TGG	0.546791	7_4:-62368055	Msa1169380:CDS
AAATCCCAAAGCTGTTGCAG+GGG	0.650488	7_4:+62366818	None:intergenic
AAATTGATCAGTCCTTGAAT+AGG	0.453066	7_4:-62365990	Msa1169380:three_prime_UTR
AACAACTTTCAACCTATTCA+AGG	0.451066	7_4:+62365978	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGATCGCAGAAATTA+GGG	+	chr7_4:62365755-62365774	None:intergenic	30.0%
AAAACAAGATCGCAGAAATT+AGG	+	chr7_4:62365756-62365775	None:intergenic	30.0%
CCTAATTAGAAGTTAGGAAA+AGG	+	chr7_4:62365799-62365818	None:intergenic	30.0%
CCCAGTTAATTCATGAAAAT+CGG	+	chr7_4:62365826-62365845	None:intergenic	30.0%
AAACCAATTTCCAAATGGAT+TGG	+	chr7_4:62366100-62366119	None:intergenic	30.0%
TTCCAAAACCAATTTCCAAA+TGG	+	chr7_4:62366105-62366124	None:intergenic	30.0%
TTGATTGTGAATGCTATTGT+TGG	-	chr7_4:62366260-62366279	Msa1169380:CDS	30.0%
TGATTGTGAATGCTATTGTT+GGG	-	chr7_4:62366261-62366280	Msa1169380:CDS	30.0%
ATGTCAAGTATTTCCTTACA+TGG	-	chr7_4:62366792-62366811	Msa1169380:CDS	30.0%
TGTCAAGTATTTCCTTACAT+GGG	-	chr7_4:62366793-62366812	Msa1169380:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	62365611	62372361	62365611	ID=Msa1169380;Name=Msa1169380
chr7_4	mRNA	62365611	62372361	62365611	ID=Msa1169380-mRNA-1;Parent=Msa1169380;Name=Msa1169380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=283\|1\|1\|1\|1\|1\|8\|425\|1061
chr7_4	exon	62365611	62366605	62365611	ID=Msa1169380-mRNA-1:exon:19744;Parent=Msa1169380-mRNA-1
chr7_4	exon	62366731	62366959	62366731	ID=Msa1169380-mRNA-1:exon:19743;Parent=Msa1169380-mRNA-1
chr7_4	exon	62367577	62367686	62367577	ID=Msa1169380-mRNA-1:exon:19742;Parent=Msa1169380-mRNA-1
chr7_4	exon	62367892	62368269	62367892	ID=Msa1169380-mRNA-1:exon:19741;Parent=Msa1169380-mRNA-1
chr7_4	exon	62368368	62368649	62368368	ID=Msa1169380-mRNA-1:exon:19740;Parent=Msa1169380-mRNA-1
chr7_4	exon	62369634	62369758	62369634	ID=Msa1169380-mRNA-1:exon:19739;Parent=Msa1169380-mRNA-1
chr7_4	exon	62370109	62370181	62370109	ID=Msa1169380-mRNA-1:exon:19738;Parent=Msa1169380-mRNA-1
chr7_4	exon	62370660	62372361	62370660	ID=Msa1169380-mRNA-1:exon:19737;Parent=Msa1169380-mRNA-1
chr7_4	five_prime_UTR	62372079	62372361	62372079	ID=Msa1169380-mRNA-1:five_prime_utr;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62370660	62372078	62370660	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62370109	62370181	62370109	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62369634	62369758	62369634	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62368368	62368649	62368368	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62367892	62368269	62367892	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62367577	62367686	62367577	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62366731	62366959	62366731	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	CDS	62366036	62366605	62366036	ID=Msa1169380-mRNA-1:cds;Parent=Msa1169380-mRNA-1
chr7_4	three_prime_UTR	62365611	62366035	62365611	ID=Msa1169380-mRNA-1:three_prime_utr;Parent=Msa1169380-mRNA-1

Gene Sequence

>Msa1169380

ATGGGGAAAGGAGGCGAAAATTATGGAAGAAAAGAGAACACGAGTTCTGATAATTCAGACGGTGAAATCTTCAAAGCGTGGTCGAAAGATGTGCGTGAATGCGAAGAACACTTTAAGGTGAGTGTGAAAACTGGTTTGAGTCACGATGAGGTTGAGAATCGGCGTAAGATCTATGGTTTTAACGAATTGGAGAAGCACGATGGCCAATCCATTTGGAAATTGGTTTTGGAACAGTTTAACGATACGTTGGTTCGGATTCTTCTCGTTGCTGCGATTATTTCGTTTGTTTTGGCTTGGTATGATGGTGATGAAGGTGGTGAGATGGAGATTACGGCTTTTGTTGAGCCGTTGGTGATCTTTTTGATATTGATTGTGAATGCTATTGTTGGGGTTTGGCAAGAGAGTAATGCGGAGAAGGCGTTGGAGGCTTTGAAAGAGATTCAATCGGAGCAAGCTTCGGTGATTAGGAATAACACCAAGATACCTAGCTTGCCCGCGAAGGATCTTGTTCCTGGTGATATTGTGGAGCTTAAGGTTGGAGATAAGGTGCCTGCTGATATGAGGGTTGTTGAACTGATAAGTTCGACGTTGAGATTGGAGCAGGGTTCTTTAACTGGTGAGAGCGAAGCGGTGAATAAGACTAATAAGCCTGTTGCCGAGGATGCTGATATTCAAGGGAAAAAGTGTATTGTGTTTGCGGGAACAACTGTTGTTAATGGGCATTGCTTTTGTCTGGTTACTCAGACTGGTATGGATACTGAGATTGGGAAGGTGCATAACCAGATACACGAGGCGTCGCAGAGTGAGGAAGATACCCCTTTGAAGAAGAAGCTAAATGAATTCGGAGAGAGGCTGACAATGATGATTGGACTTATTTGTATTTTGGTTTGGCTCATCAATGTCAAGTATTTCCTTACATGGGATTATGTTGATGACGGGTGGTGGCCTACCAACTTCAAGTTTTCCTTCGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCGTTGGCTGTGGCGGCTATTCCCGAGGGATTGCCTGCTGTTATTACGACTTGTCTCGCACTTGGTACTCGCAAGATGGCCCAGAAGAATGCCCTGGTTAGGAAGCTACCAAGTGTTGAAACTCTGGGTTGTACAACTGTGATTTGTTCTGATAAAACTGGTACACTGACTACAAACCAGATGGCTGTTTCGAAACTTGTAGCTATTGGCACTAATGTAGACGCACTGCGAGCCTTTAAGGTCGAAGGAACTACATATAATCCAAATGATGGTCAAATAGAGAATTGGCCGGCTGGTCAATTGGATGCTAACCTTCAGACCATAGCGAAAATAGCTGCTGTTTGTAATGATGCCGGAATATCACAGTCAGAGCATAAATTTGTTGCCCATGGAATGCCTACTGAAGCAGCTTTGAAGGTTTTGGTAGAGAAGATGGGCCTGCCTGAAGGATCCAAAGATGTACAATCAGGAAGCAAAAGTACCATACTGCGTTGTTGTGAATGGTGGAATGAACATGACCGGCGGATTGCTACTCTTGAGTTTGACCGTGACAGGAAGTCAATGGGTGTTATTGTAGATTCTGGTGTGGGGAAAAAGAAGTCGCTGCTGGTTAAGGGTGCTGTCGAAAATGTGTTGGATAGAAGCTCTAAAGTTCAGTTGCGTGACGGTTCAGTTGTAAAGCTGGACGATAATGCTAAGAAACTCATATTGCAAGCTCTCCATGAGATGTCCACCAGTGCATTACGCTGTTTGGGATTTGCCTACAAGGACGAGCTCGCTAATTTTGAAAACTATAATGGGAACGAGGATCATCCAGCCCACCAGCTTTTGCTTGATCCTAACAATTATTCATCAATTGAAGATGAACTCATTTTTGTTGGCTTGGTTGGGTTGAGGGATCCTCCTAGGGAGGAGGTTTACCAGGCAATTGAAGACTGCAGAGCAGCTGGAATTCGTGTTATGGTTATAACAGGAGACAACAAAAACACAGCTGAAGCTATATGCCGCGAAATAGGTGTATTTGCACCCAATGAAGACATTAGTTCAAAAAGTTTAACTGGTAAAGATTTTATGGAACTCCGTGATAAAAAAGCTTATCTGAGACAGACTGGTGGGCTTTTGTTTTCGAGAGCTGAACCTAGACACAAGCAGGACATTGTGAGGCTTCTTAAAGAGGATGGGGAGGTGGTAGCTATGACTGGGGATGGTGTTAATGATGCACCTGCCTTAAAGCTTGCAGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTAGCAGACGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAAGGTAGATCTATCTACAATAACATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATTGGCGAGGTCGCTTCTATATTTCTTACAGCTGCACTAGGTATTCCTGAAGGACTGATACCTGTCCAGCTTTTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTTATTAACTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTATGTTGGATTAGCTACTGTTGGTGTCTTCATTATATGGTATACACATGGTTCCTTCATGGGAATTGACCTCAGCGGCGATGGACATACTCTTGTCACTTACTCCCAGCTTGCCAACTGGGGTCAATGCTCCTCTTGGAATAACTTCACTGCTGCTCCCTTCACCGCTGGTTCTAGAGTCATCTCTTTTGATGCCGACCCATGCGACTACTTCACTACTGGTAAAGTGAAAGCTATGACACTGTCCCTCTCTGTGTTGGTAGCTATTGAAATGTTCAACTCTCTCAATGCTCTGTCTGAAGATGGAAGCCTTTTGACAATGCCTCCCTGGGTGAACCCTTGGCTTCTTTTGGCAATGTCCGTTTCGTTTGGGCTGCATTTTTTGATTTTGTATGTGCCATTCTTAGCAAAAGTTTTTGGCATAGTGCCCCTGAGCTTCAATGAATGGCTTTTGGTTTTGGCGGTTGCATTGCCTGTCATTCTAATTGACGAGGTTTTGAAATTTGTTGGGAGATGTACAAGTGAGTCTGCAAGAAGATCAAAGCAAAAATCAGATTAG

Protein sequence

>Msa1169380

MGKGGENYGRKENTSSDNSDGEIFKAWSKDVRECEEHFKVSVKTGLSHDEVENRRKIYGFNELEKHDGQSIWKLVLEQFNDTLVRILLVAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEQASVIRNNTKIPSLPAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKPVAEDADIQGKKCIVFAGTTVVNGHCFCLVTQTGMDTEIGKVHNQIHEASQSEEDTPLKKKLNEFGERLTMMIGLICILVWLINVKYFLTWDYVDDGWWPTNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVAIGTNVDALRAFKVEGTTYNPNDGQIENWPAGQLDANLQTIAKIAAVCNDAGISQSEHKFVAHGMPTEAALKVLVEKMGLPEGSKDVQSGSKSTILRCCEWWNEHDRRIATLEFDRDRKSMGVIVDSGVGKKKSLLVKGAVENVLDRSSKVQLRDGSVVKLDDNAKKLILQALHEMSTSALRCLGFAYKDELANFENYNGNEDHPAHQLLLDPNNYSSIEDELIFVGLVGLRDPPREEVYQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFAPNEDISSKSLTGKDFMELRDKKAYLRQTGGLLFSRAEPRHKQDIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGVFIIWYTHGSFMGIDLSGDGHTLVTYSQLANWGQCSSWNNFTAAPFTAGSRVISFDADPCDYFTTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKVFGIVPLSFNEWLLVLAVALPVILIDEVLKFVGRCTSESARRSKQKSD*