AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078940 MtrunA17_Chr7g0263731 97.863 468 10 0 1 468 1 468 0.0 932
Msa1078940 MtrunA17_Chr1g0181581 69.665 478 121 11 1 467 1 465 0.0 596
Msa1078940 MtrunA17_Chr6g0462191 50.873 458 188 9 1 453 1 426 4.66e-121 360
Msa1078940 MtrunA17_Chr1g0200161 39.293 509 238 11 1 465 1 482 5.26e-98 303
Msa1078940 MtrunA17_Chr4g0045641 35.294 357 178 15 108 439 146 474 5.62e-43 159
Msa1078940 MtrunA17_Chr4g0025441 47.917 192 96 2 107 298 95 282 7.72e-42 154
Msa1078940 MtrunA17_Chr8g0346021 32.061 393 200 14 94 438 113 486 1.53e-41 155
Msa1078940 MtrunA17_Chr4g0020671 31.590 459 210 23 3 439 4 380 2.05e-38 144
Msa1078940 MtrunA17_Chr2g0283321 40.828 169 97 2 107 275 62 227 5.79e-36 134
Msa1078940 MtrunA17_Chr7g0273861 28.539 438 219 18 1 411 1 371 6.30e-32 126
Msa1078940 MtrunA17_Chr3g0135851 44.385 187 89 5 103 275 80 265 1.23e-31 126
Msa1078940 MtrunA17_Chr2g0316401 35.928 167 106 1 109 275 75 240 7.46e-31 121
Msa1078940 MtrunA17_Chr1g0146931 39.109 202 97 4 106 281 120 321 3.14e-28 117
Msa1078940 MtrunA17_Chr3g0126901 27.352 457 219 15 1 429 1 372 5.33e-26 110
Msa1078940 MtrunA17_Chr1g0204901 31.950 241 130 8 1 211 1 237 9.92e-20 91.7
Msa1078940 MtrunA17_Chr1g0203711 28.254 315 173 10 107 411 114 385 7.56e-19 88.6
Msa1078940 MtrunA17_Chr8g0340761 31.496 254 125 12 1 216 1 243 1.01e-18 88.2
Msa1078940 MtrunA17_Chr8g0342551 33.681 288 166 8 1 283 1 268 1.51e-18 87.8
Msa1078940 MtrunA17_Chr8g0389781 40.458 131 61 4 103 223 121 244 2.33e-18 87.4
Msa1078940 MtrunA17_Chr6g0472551 53.165 79 36 1 107 184 115 193 2.98e-18 87.0
Msa1078940 MtrunA17_Chr2g0330051 32.000 325 150 10 105 409 69 342 3.53e-18 86.3
Msa1078940 MtrunA17_Chr2g0330921 48.780 82 36 1 97 172 80 161 1.14e-16 81.3
Msa1078940 MtrunA17_Chr1g0172611 27.500 280 179 10 1 265 1 271 3.78e-16 79.7
Msa1078940 MtrunA17_Chr7g0273951 50.000 74 37 0 110 183 108 181 1.76e-15 78.2
Msa1078940 MtrunA17_Chr4g0060381 28.507 221 118 3 54 272 61 243 3.15e-15 78.2
Msa1078940 MtrunA17_Chr1g0166431 43.000 100 56 1 108 206 117 216 5.87e-14 73.6
Msa1078940 MtrunA17_Chr8g0371131 48.485 66 34 0 106 171 69 134 8.40e-14 68.6
Msa1078940 MtrunA17_Chr3g0130441 36.842 114 65 3 251 362 1 109 2.02e-12 64.3
Msa1078940 MtrunA17_Chr1g0156121 31.481 162 84 5 108 267 124 260 3.05e-12 68.9
Msa1078940 MtrunA17_Chr3g0130451 54.098 61 25 1 169 226 47 107 5.60e-12 62.4
Msa1078940 MtrunA17_Chr4g0057321 46.970 66 35 0 106 171 86 151 1.35e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078940 AT5G03040.1 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa1078940 AT5G03040.3 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa1078940 AT5G03040.2 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa1078940 AT3G09710.1 48.211 475 199 15 1 456 1 447 1.14e-111 337
Msa1078940 AT3G52290.1 46.383 470 190 14 1 456 1 422 2.02e-111 336
Msa1078940 AT3G09710.2 46.830 489 199 16 1 456 1 461 3.00e-108 329
Msa1078940 AT2G26410.2 37.425 334 160 8 106 434 146 435 2.42e-56 196
Msa1078940 AT2G26410.1 37.425 334 160 8 106 434 146 435 2.42e-56 196
Msa1078940 AT3G22190.3 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1078940 AT3G22190.2 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1078940 AT3G22190.4 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1078940 AT3G22190.1 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa1078940 AT3G59690.2 33.770 305 152 8 111 411 172 430 1.43e-37 144
Msa1078940 AT3G59690.1 33.770 305 152 8 111 411 172 430 1.43e-37 144
Msa1078940 AT2G33990.1 40.698 172 100 1 107 278 46 215 1.71e-37 138
Msa1078940 AT2G26180.1 46.667 195 89 4 95 275 65 258 1.15e-36 140
Msa1078940 AT1G01110.2 28.858 499 266 20 1 440 1 469 1.43e-36 141
Msa1078940 AT2G43680.4 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1078940 AT2G43680.2 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1078940 AT2G43680.3 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1078940 AT2G43680.5 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa1078940 AT2G43680.1 31.672 341 173 12 105 439 320 606 1.71e-35 140
Msa1078940 AT4G00820.1 30.833 360 210 13 106 440 130 475 1.93e-34 135
Msa1078940 AT3G15050.1 37.870 169 104 1 108 276 50 217 3.33e-33 126
Msa1078940 AT3G49260.1 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa1078940 AT3G49260.4 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa1078940 AT3G49260.2 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa1078940 AT5G13460.1 29.508 305 158 10 1 279 1 274 5.23e-30 122
Msa1078940 AT3G49260.3 30.293 307 176 10 1 275 1 301 1.85e-29 120
Msa1078940 AT1G72670.1 34.906 212 124 5 95 295 74 282 1.45e-28 117
Msa1078940 AT4G10640.1 28.189 486 189 20 1 436 1 376 2.54e-22 99.4
Msa1078940 AT1G17480.1 36.306 157 87 3 106 260 92 237 7.08e-21 94.4
Msa1078940 AT4G29150.1 44.444 99 55 0 102 200 125 223 7.97e-18 85.5
Msa1078940 AT4G14750.1 43.529 85 48 0 90 174 87 171 1.46e-17 84.7
Msa1078940 AT4G14750.2 43.529 85 48 0 90 174 146 230 2.06e-17 84.7
Msa1078940 AT3G16490.1 43.000 100 52 2 101 197 100 197 2.21e-17 84.3
Msa1078940 AT4G14750.3 43.529 85 48 0 90 174 146 230 2.26e-17 84.7
Msa1078940 AT1G18840.1 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa1078940 AT1G18840.3 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa1078940 AT1G18840.2 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa1078940 AT5G35670.1 35.542 166 94 5 107 270 159 313 4.03e-16 80.9
Msa1078940 AT1G74690.1 31.953 169 85 3 108 272 113 255 4.80e-16 81.3
Msa1078940 AT4G23060.1 42.157 102 57 1 82 181 139 240 1.65e-15 79.3
Msa1078940 AT5G07240.1 61.017 59 23 0 110 168 108 166 1.79e-15 78.6
Msa1078940 AT5G07240.2 61.017 59 23 0 110 168 154 212 2.22e-15 78.6
Msa1078940 AT1G51960.1 54.839 62 28 0 110 171 102 163 6.29e-15 76.3
Msa1078940 AT5G62070.1 59.649 57 23 0 106 162 115 171 9.05e-15 76.3
Msa1078940 AT3G51380.1 50.000 64 32 0 106 169 35 98 1.66e-14 69.7
Msa1078940 AT5G03960.1 36.000 150 65 3 100 232 99 234 7.27e-14 73.6
Msa1078940 AT5G03960.3 36.000 150 65 3 100 232 100 235 7.64e-14 73.6
Msa1078940 AT5G03960.2 36.000 150 65 3 100 232 100 235 7.64e-14 73.6
Msa1078940 AT3G49380.1 54.237 59 27 0 106 164 108 166 4.36e-11 64.7
Msa1078940 AT1G14380.7 27.477 222 117 7 70 274 42 236 7.78e-11 64.7
Msa1078940 AT1G14380.6 27.477 222 117 7 70 274 42 236 8.85e-11 64.7
Msa1078940 AT1G14380.5 27.477 222 117 7 70 274 42 236 8.85e-11 64.7
Msa1078940 AT1G14380.2 27.477 222 117 7 70 274 42 236 8.85e-11 64.7

Find 144 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCCCATTATCTTCT+TGG 0.102885 7_2:-77965041 None:intergenic
CTCATACTTGCTCAGTAATT+TGG 0.160600 7_2:-77966122 None:intergenic
CACAGGTAACTCTGCATTTA+TGG 0.176562 7_2:-77967784 None:intergenic
GACCTTGAGGGGAAGAAATT+TGG 0.205051 7_2:+77968056 Msa1078940:three_prime_UTR
TTTACAGGAACATGTATTAA+AGG 0.248528 7_2:+77964524 Msa1078940:five_prime_UTR
ATCTTTCACTTCATTCATTC+AGG 0.259648 7_2:+77964623 Msa1078940:five_prime_UTR
CAATTTGTTCTTTAGATTGT+AGG 0.261072 7_2:-77966096 None:intergenic
AGCTGGGTGAGCCAGGATTT+TGG 0.263792 7_2:-77967377 None:intergenic
TGATATAAAGGATCAAATTA+AGG 0.280243 7_2:+77965014 Msa1078940:intron
CTGTACACTTGCCATGCTTT+TGG 0.281192 7_2:-77967499 None:intergenic
AAAATACAAATTGATTAATA+TGG 0.294508 7_2:-77968013 None:intergenic
ATTGCTGCCACTTCATCCTT+TGG 0.307055 7_2:-77965451 None:intergenic
TAATGGGGAAGAAGGGAAAT+TGG 0.319680 7_2:+77965050 Msa1078940:exon
AGTTCGAGCCGCAGCATTAT+AGG 0.323895 7_2:+77967288 Msa1078940:CDS
TTCCGCAGGCACTCTATTGC+CGG 0.327399 7_2:+77967531 Msa1078940:CDS
AAAAGTATTAATGAAATGTT+TGG 0.336829 7_2:-77967963 None:intergenic
AGTCCATTAGCAAAAGAAAA+TGG 0.343691 7_2:+77967657 Msa1078940:CDS
TCAGTTAATTTAATATCTTC+TGG 0.345648 7_2:-77965295 None:intergenic
AAGGAATGCCAAGAAGATAA+TGG 0.348066 7_2:+77965033 Msa1078940:exon
AGGAATGCCAAGAAGATAAT+GGG 0.352188 7_2:+77965034 Msa1078940:exon
TCCATCAGTTCCAAGTTATA+TGG 0.368788 7_2:+77967590 Msa1078940:CDS
CGGCTTAGTAGGAGTTGAAT+TGG 0.370892 7_2:-77967406 None:intergenic
CTTGGCCTCGCAGGCGAAGC+CGG 0.371444 7_2:-77967729 None:intergenic
TTAGGCAAGAAGAGCATTGC+GGG 0.387422 7_2:+77965732 Msa1078940:intron
AGAAAATGGCAAACAAGAAA+AGG 0.397205 7_2:+77967671 Msa1078940:CDS
GGCTTATGCATTCACTCATC+AGG 0.397924 7_2:+77966171 Msa1078940:CDS
TGGATCCCACCAATCCTACT+TGG 0.400459 7_2:+77967172 Msa1078940:CDS
GACTGAAAGCTGGGTGAGCC+AGG 0.404427 7_2:-77967384 None:intergenic
TTTATGGCGGTTTCTACCTT+CGG 0.410128 7_2:-77967768 None:intergenic
ATCTATGAATCCAATGTTTG+TGG 0.410976 7_2:+77967152 Msa1078940:CDS
TCCATAACCCAACTTCCCTT+TGG 0.416087 7_2:-77967468 None:intergenic
ATGGATGGCTGCCCGACCTT+GGG 0.416101 7_2:+77967215 Msa1078940:CDS
TAGGAGGGTCAGAATGTTAG+AGG 0.417574 7_2:+77965873 Msa1078940:CDS
TTCAGAGTTGAGCTGGAAAC+GGG 0.418428 7_2:-77967334 None:intergenic
CAGAATGTTAGAGGAGAATC+AGG 0.419135 7_2:+77965882 Msa1078940:CDS
AAACAAGAAAAGGGGTCCTT+TGG 0.420323 7_2:+77967681 Msa1078940:CDS
AGAGCATTGCGGGCTTTAAG+AGG 0.426239 7_2:+77965742 Msa1078940:CDS
CTGATTATTATATAATCAAC+TGG 0.427029 7_2:-77967820 None:intergenic
TGCAATCTCAGATTCGTTCT+AGG 0.427507 7_2:+77965854 Msa1078940:CDS
CATTATAGATTGGGGAGGAA+TGG 0.428913 7_2:+77966065 Msa1078940:intron
TCCAAAGGGAAGTTGGGTTA+TGG 0.429384 7_2:+77967467 Msa1078940:CDS
GAAAATGGCAAACAAGAAAA+GGG 0.429410 7_2:+77967672 Msa1078940:CDS
TTGGCCTCGCAGGCGAAGCC+GGG 0.432715 7_2:-77967728 None:intergenic
TTCTTTACCATTGACCTTGA+GGG 0.433200 7_2:+77968044 Msa1078940:three_prime_UTR
GAAGCAGAACCCGGCTTAGT+AGG 0.447007 7_2:-77967417 None:intergenic
ATTATAGATTGGGGAGGAAT+GGG 0.448809 7_2:+77966066 Msa1078940:intron
TTTCTTCCCCTCAAGGTCAA+TGG 0.453129 7_2:-77968051 None:intergenic
TTTCAGAGTTGAGCTGGAAA+CGG 0.462924 7_2:-77967335 None:intergenic
ATATCTTCTGGCGGAGGAAG+AGG 0.467550 7_2:-77965283 None:intergenic
GATGGATGGCTGCCCGACCT+TGG 0.469154 7_2:+77967214 Msa1078940:CDS
CATGTATTAAAGGTGTGGTT+TGG 0.469410 7_2:+77964534 Msa1078940:five_prime_UTR
CTAGCAACTGAAGCAGAACC+CGG 0.473296 7_2:-77967426 None:intergenic
GGCGAGTCCAAAGGGAAGTT+GGG 0.474248 7_2:+77967461 Msa1078940:CDS
CAAATTACTGAGCAAGTATG+AGG 0.474416 7_2:+77966123 Msa1078940:CDS
AATGTATTTCAGAGTTGAGC+TGG 0.481876 7_2:-77967341 None:intergenic
GGATCCCACCAATCCTACTT+GGG 0.483131 7_2:+77967173 Msa1078940:CDS
CAAGAAGATAATGGGGAAGA+AGG 0.486516 7_2:+77965042 Msa1078940:exon
TAATACATGTTCCTGTAAAG+AGG 0.486866 7_2:-77964520 None:intergenic
GAAACTCTTGATTCTAAATG+TGG 0.487636 7_2:+77968203 Msa1078940:three_prime_UTR
CGGGTTCTGCTTCAGTTGCT+AGG 0.487745 7_2:+77967427 Msa1078940:CDS
CAATTCAACTCCTACTAAGC+CGG 0.488786 7_2:+77967407 Msa1078940:CDS
AGGCGAGTCCAAAGGGAAGT+TGG 0.492154 7_2:+77967460 Msa1078940:CDS
CTTGTTGATGAAACACAGAA+TGG 0.495295 7_2:-77968123 None:intergenic
CTGAAGAAGGCGAGTCCAAA+GGG 0.500013 7_2:+77967453 Msa1078940:CDS
AGTTGAATTGGACTGAAAGC+TGG 0.502940 7_2:-77967394 None:intergenic
GCTGTCTGAACAGAACGAAC+AGG 0.506676 7_2:-77965382 None:intergenic
AGCGGAGGGTACTCATGGCT+TGG 0.509205 7_2:-77965810 None:intergenic
AGGACAGAAATCATTAAAGT+AGG 0.510647 7_2:+77967849 Msa1078940:three_prime_UTR
ATTGCGGGCTTTAAGAGGGC+TGG 0.511040 7_2:+77965747 Msa1078940:CDS
CGACTCAATCTGCGAAAGCT+AGG 0.512605 7_2:+77967616 Msa1078940:CDS
GGTGGACCTGAATGACGCCT+TGG 0.514462 7_2:-77967747 None:intergenic
TATTAAAGGTGTGGTTTGGT+TGG 0.514474 7_2:+77964538 Msa1078940:five_prime_UTR
AGCTCTTACAGAAGCACGCA+AGG 0.515912 7_2:+77965917 Msa1078940:CDS
TCCGCAGGCACTCTATTGCC+GGG 0.521984 7_2:+77967532 Msa1078940:CDS
CCAGTAGCGAGCCAAAATCC+TGG 0.525286 7_2:+77967366 Msa1078940:CDS
AGCTCTCAGCCCTGACTCAA+AGG 0.528686 7_2:+77965090 Msa1078940:CDS
GGTGAGATTGAAAACATTGA+TGG 0.529438 7_2:+77965768 Msa1078940:CDS
TACAGTCAGATCGGTTCCGC+AGG 0.535268 7_2:+77967517 Msa1078940:CDS
AATACATGTTCCTGTAAAGA+GGG 0.535430 7_2:-77964519 None:intergenic
GTTCATGTTGATCTTGTGAC+GGG 0.537235 7_2:+77968078 Msa1078940:three_prime_UTR
AACCAAATTTCTTCCCCTCA+AGG 0.538043 7_2:-77968058 None:intergenic
CATTGAGCGGAGGGTACTCA+TGG 0.539242 7_2:-77965815 None:intergenic
AATTCAACTCCTACTAAGCC+GGG 0.541175 7_2:+77967408 Msa1078940:CDS
ACCATATAACTTGGAACTGA+TGG 0.542002 7_2:-77967591 None:intergenic
TTGGTGGGATCCACAAACAT+TGG 0.547737 7_2:-77967162 None:intergenic
TTGTAATTTCAGCAACATGA+TGG 0.550799 7_2:-77965339 None:intergenic
TATATAATAATCAGAGTGAA+AGG 0.551583 7_2:+77967829 Msa1078940:three_prime_UTR
ATGGCGGTTTCTACCTTCGG+TGG 0.551866 7_2:-77967765 None:intergenic
TGAGTCGGCACCATATAACT+TGG 0.553119 7_2:-77967600 None:intergenic
GATCCCACCAATCCTACTTG+GGG 0.554025 7_2:+77967174 Msa1078940:CDS
CATTCTGTGTTTCATCAACA+AGG 0.560883 7_2:+77968124 Msa1078940:three_prime_UTR
ATCATCTCTAACTGATGACC+CGG 0.566819 7_2:-77967550 None:intergenic
ATTCTTTACCATTGACCTTG+AGG 0.568860 7_2:+77968043 Msa1078940:three_prime_UTR
TACAACTGTGGTGGATGTCG+AGG 0.573197 7_2:+77965357 Msa1078940:CDS
GAGCATTGCGGGCTTTAAGA+GGG 0.574907 7_2:+77965743 Msa1078940:CDS
GGTTCATGTTGATCTTGTGA+CGG 0.575573 7_2:+77968077 Msa1078940:three_prime_UTR
GCTGTATCGATTTCTACAGA+GGG 0.577428 7_2:-77965256 None:intergenic
AGGAACATGTATTAAAGGTG+TGG 0.580118 7_2:+77964529 Msa1078940:five_prime_UTR
TAACGTCTGCATTGAGCGGA+GGG 0.581741 7_2:-77965824 None:intergenic
AATTTAATATCTTCTGGCGG+AGG 0.588204 7_2:-77965289 None:intergenic
AAGAAGATAATGGGGAAGAA+GGG 0.590179 7_2:+77965043 Msa1078940:exon
AGATTGAAAACATTGATGGA+AGG 0.590382 7_2:+77965772 Msa1078940:CDS
ACTGAAGAAGGCGAGTCCAA+AGG 0.594202 7_2:+77967452 Msa1078940:CDS
ATCCCACCAATCCTACTTGG+GGG 0.597567 7_2:+77967175 Msa1078940:CDS
AGTTGCTAGGAAACTGAAGA+AGG 0.598507 7_2:+77967440 Msa1078940:CDS
CTGGCCACACCATTGCTCAC+AGG 0.598982 7_2:-77967801 None:intergenic
TGCTGTATCGATTTCTACAG+AGG 0.603089 7_2:-77965257 None:intergenic
TGGTAAACCAAAGGATGAAG+TGG 0.603448 7_2:+77965444 Msa1078940:CDS
TCTTTACCATTGACCTTGAG+GGG 0.607112 7_2:+77968045 Msa1078940:three_prime_UTR
ATCTCAGATTCGTTCTAGGA+GGG 0.616350 7_2:+77965858 Msa1078940:CDS
AATCTCAGATTCGTTCTAGG+AGG 0.623684 7_2:+77965857 Msa1078940:CDS
GATTGAAAACATTGATGGAA+GGG 0.623713 7_2:+77965773 Msa1078940:CDS
CTAACGTCTGCATTGAGCGG+AGG 0.624271 7_2:-77965825 None:intergenic
TGGCAAGTGTACAGTCAGAT+CGG 0.624328 7_2:+77967508 Msa1078940:CDS
CTAGCTTTCGCAGATTGAGT+CGG 0.624424 7_2:-77967615 None:intergenic
GGATGATGACTCCAAAAGCA+TGG 0.624895 7_2:+77967488 Msa1078940:CDS
CATGTTGATCTTGTGACGGG+AGG 0.627453 7_2:+77968081 Msa1078940:three_prime_UTR
GTTGAATTGGACTGAAAGCT+GGG 0.631003 7_2:-77967393 None:intergenic
AAGGGAGCTTGAAACCATGC+GGG 0.632453 7_2:+77965936 Msa1078940:CDS
GCCCGACCTTGGGAGAGCCG+TGG 0.632629 7_2:+77967225 Msa1078940:CDS
ACCCGGCAATAGAGTGCCTG+CGG 0.633713 7_2:-77967533 None:intergenic
GAAAGAAACCCATACCCGCA+TGG 0.636453 7_2:-77965950 None:intergenic
TCTTCTGGCGGAGGAAGAGG+CGG 0.642359 7_2:-77965280 None:intergenic
AGGTAACTCTGCATTTATGG+CGG 0.642380 7_2:-77967781 None:intergenic
GCGTCATTCAGGTCCACCGA+AGG 0.644936 7_2:+77967752 Msa1078940:CDS
TATGCGAAGAGAAAGAGCAC+TGG 0.647271 7_2:+77966150 Msa1078940:CDS
TGCTGAAATTACAACTGTGG+TGG 0.649384 7_2:+77965348 Msa1078940:CDS
GGAATGCCAAGAAGATAATG+GGG 0.650329 7_2:+77965035 Msa1078940:exon
TCGAGCCGCAGCATTATAGG+TGG 0.650702 7_2:+77967291 Msa1078940:CDS
AAAATGGCAAACAAGAAAAG+GGG 0.651135 7_2:+77967673 Msa1078940:CDS
TTTAGGCAAGAAGAGCATTG+CGG 0.651340 7_2:+77965731 Msa1078940:intron
TTTCTCCACCTATAATGCTG+CGG 0.652765 7_2:-77967296 None:intergenic
GTTAATTTAATATCTTCTGG+CGG 0.660808 7_2:-77965292 None:intergenic
GTTCTTTATCAACAACGCCA+CGG 0.668044 7_2:-77967242 None:intergenic
CAAGGGAGCTTGAAACCATG+CGG 0.673697 7_2:+77965935 Msa1078940:CDS
GAGCTGGATAGAACGATGGA+TGG 0.675083 7_2:+77967200 Msa1078940:CDS
GGTGGAGCTGGATAGAACGA+TGG 0.677630 7_2:+77967196 Msa1078940:CDS
GCTCTTACAGAAGCACGCAA+GGG 0.686718 7_2:+77965918 Msa1078940:CDS
GAGCTAACGTCTGCATTGAG+CGG 0.689445 7_2:-77965828 None:intergenic
GCAGAGTTACCTGTGAGCAA+TGG 0.694985 7_2:+77967792 Msa1078940:CDS
TCTGTGTTTCATCAACAAGG+AGG 0.705680 7_2:+77968127 Msa1078940:three_prime_UTR
CTGTATCGATTTCTACAGAG+GGG 0.722657 7_2:-77965255 None:intergenic
GTTACCTGTGAGCAATGGTG+TGG 0.726390 7_2:+77967797 Msa1078940:CDS
TGTTGCTGAAATTACAACTG+TGG 0.743093 7_2:+77965345 Msa1078940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAATCAATTTTTTCAA+TGG - chr7_2:77964864-77964883 None:intergenic 10.0%
!!! AAAATATTTTCAAACTAAAT+TGG - chr7_2:77966610-77966629 None:intergenic 10.0%
!! AAAATACAAATTGATTAATA+TGG - chr7_2:77968016-77968035 None:intergenic 10.0%
!!! GCATTTTAAAAAAATGTTAA+AGG - chr7_2:77965975-77965994 None:intergenic 15.0%
!!! TGAATTTTTTTTAGATGAAT+TGG + chr7_2:77966237-77966256 Msa1078940:intron 15.0%
!!! TTAAACATTTGTTATAGAAA+GGG - chr7_2:77966742-77966761 None:intergenic 15.0%
!!! TTTAAACATTTGTTATAGAA+AGG - chr7_2:77966743-77966762 None:intergenic 15.0%
!! CAATTCATTCAAATTATAAT+AGG - chr7_2:77967056-77967075 None:intergenic 15.0%
!!! AAAAGTATTAATGAAATGTT+TGG - chr7_2:77967966-77967985 None:intergenic 15.0%
!!! TTTCATTAATACTTTTGATT+TGG + chr7_2:77967970-77967989 Msa1078940:three_prime_UTR 15.0%
!!! TTCATTAATACTTTTGATTT+GGG + chr7_2:77967971-77967990 Msa1078940:three_prime_UTR 15.0%
!! TTTATGAAAAAAAGAGAAAA+AGG - chr7_2:77968174-77968193 None:intergenic 15.0%
!! ATTCAATCTAAATCAAAGTT+GGG - chr7_2:77964748-77964767 None:intergenic 20.0%
!! AATTCAATCTAAATCAAAGT+TGG - chr7_2:77964749-77964768 None:intergenic 20.0%
!! TAATACATACTACTACTAAT+AGG + chr7_2:77964772-77964791 Msa1078940:intron 20.0%
!! AATACATACTACTACTAATA+GGG + chr7_2:77964773-77964792 Msa1078940:intron 20.0%
!! TTAAAACATGCTAATATCAA+TGG + chr7_2:77964902-77964921 Msa1078940:intron 20.0%
!! TGATATAAAGGATCAAATTA+AGG + chr7_2:77965014-77965033 Msa1078940:intron 20.0%
!! CAAGTAAATCAAAAAAGAAA+TGG + chr7_2:77965203-77965222 Msa1078940:CDS 20.0%
!! AAATCAAAAAAGAAATGGTT+TGG + chr7_2:77965208-77965227 Msa1078940:CDS 20.0%
!! AATCAAAAAAGAAATGGTTT+GGG + chr7_2:77965209-77965228 Msa1078940:CDS 20.0%
!! TCAGTTAATTTAATATCTTC+TGG - chr7_2:77965298-77965317 None:intergenic 20.0%
!!! TATCATTTTGAAATACCTTT+CGG + chr7_2:77965686-77965705 Msa1078940:intron 20.0%
!!! ACTGTCTTTTAAAATCATTT+AGG + chr7_2:77965714-77965733 Msa1078940:intron 20.0%
!!! AATTTTTATTTTCCGATCAA+TGG - chr7_2:77966393-77966412 None:intergenic 20.0%
!!! CTAAATTGGTTATAAGTTTT+AGG - chr7_2:77966596-77966615 None:intergenic 20.0%
!! CTATATAGATCTTCAAAAAT+AGG - chr7_2:77966688-77966707 None:intergenic 20.0%
!! AACTGAATTAAGCATATTAT+TGG - chr7_2:77966957-77966976 None:intergenic 20.0%
!! CTGATTATTATATAATCAAC+TGG - chr7_2:77967823-77967842 None:intergenic 20.0%
!! TATATAATAATCAGAGTGAA+AGG + chr7_2:77967829-77967848 Msa1078940:three_prime_UTR 20.0%
!!! TCATTAATACTTTTGATTTG+GGG + chr7_2:77967972-77967991 Msa1078940:three_prime_UTR 20.0%
! TTTACAGGAACATGTATTAA+AGG + chr7_2:77964524-77964543 Msa1078940:five_prime_UTR 25.0%
!!! CTTTTTGTTTAAACACGAAT+TGG + chr7_2:77964590-77964609 Msa1078940:five_prime_UTR 25.0%
! AAATTTATCTCTCTTGAAGA+AGG - chr7_2:77964665-77964684 None:intergenic 25.0%
!! TCCTTCTTTTTGTGATATAA+AGG + chr7_2:77965002-77965021 Msa1078940:intron 25.0%
! TCCTTTATATCACAAAAAGA+AGG - chr7_2:77965006-77965025 None:intergenic 25.0%
! GTTAATTTAATATCTTCTGG+CGG - chr7_2:77965295-77965314 None:intergenic 25.0%
! TCTATATATGCAGAATAATG+AGG + chr7_2:77965625-77965644 Msa1078940:intron 25.0%
!! TTATTTGACTTCGTTTGTAA+TGG + chr7_2:77966020-77966039 Msa1078940:intron 25.0%
! CCAATCTATAATGAAAATTC+GGG - chr7_2:77966058-77966077 None:intergenic 25.0%
! CCCAATCTATAATGAAAATT+CGG - chr7_2:77966059-77966078 None:intergenic 25.0%
!! CCGAATTTTCATTATAGATT+GGG + chr7_2:77966056-77966075 Msa1078940:intron 25.0%
!! CGAATTTTCATTATAGATTG+GGG + chr7_2:77966057-77966076 Msa1078940:intron 25.0%
!! CAATTTGTTCTTTAGATTGT+AGG - chr7_2:77966099-77966118 None:intergenic 25.0%
! TTTGAAGATCTATATAGAAG+AGG + chr7_2:77966691-77966710 Msa1078940:intron 25.0%
! ATGACAACTGAAAATAACTT+AGG + chr7_2:77966813-77966832 Msa1078940:intron 25.0%
! ATTATGCAAAAAAATCAACG+TGG - chr7_2:77966926-77966945 None:intergenic 25.0%
!! TTTTTGCCAATAGAGATATT+TGG + chr7_2:77966998-77967017 Msa1078940:intron 25.0%
! GTTTGGATACACATAAAAAT+AGG - chr7_2:77967949-77967968 None:intergenic 25.0%
AATACATGTTCCTGTAAAGA+GGG - chr7_2:77964522-77964541 None:intergenic 30.0%
TAATACATGTTCCTGTAAAG+AGG - chr7_2:77964523-77964542 None:intergenic 30.0%
ATCTTTCACTTCATTCATTC+AGG + chr7_2:77964623-77964642 Msa1078940:five_prime_UTR 30.0%
!!! TTAGCATGTTTTAATCTGTG+TGG - chr7_2:77964896-77964915 None:intergenic 30.0%
! ATTTTCATACCTTTGAGTCA+GGG - chr7_2:77965102-77965121 None:intergenic 30.0%
! TATTTTCATACCTTTGAGTC+AGG - chr7_2:77965103-77965122 None:intergenic 30.0%
TTGTAATTTCAGCAACATGA+TGG - chr7_2:77965342-77965361 None:intergenic 30.0%
! TCAAGATTCAAACAGCTTTT+CGG + chr7_2:77965473-77965492 Msa1078940:CDS 30.0%
GCGAACAAATTTGAAAATGA+GGG - chr7_2:77965526-77965545 None:intergenic 30.0%
AGCGAACAAATTTGAAAATG+AGG - chr7_2:77965527-77965546 None:intergenic 30.0%
AGATTGAAAACATTGATGGA+AGG + chr7_2:77965772-77965791 Msa1078940:CDS 30.0%
GATTGAAAACATTGATGGAA+GGG + chr7_2:77965773-77965792 Msa1078940:CDS 30.0%
AAATGCTAATCTCTCAACAT+TGG + chr7_2:77965989-77966008 Msa1078940:intron 30.0%
! CCCGAATTTTCATTATAGAT+TGG + chr7_2:77966055-77966074 Msa1078940:intron 30.0%
! ATTTTCATTATAGATTGGGG+AGG + chr7_2:77966060-77966079 Msa1078940:intron 30.0%
TAGGAAACAAAAGTGAAGAA+AGG - chr7_2:77966669-77966688 None:intergenic 30.0%
CACTATCCAAATATCTCTAT+TGG - chr7_2:77967007-77967026 None:intergenic 30.0%
CAATAGAGATATTTGGATAG+TGG + chr7_2:77967005-77967024 Msa1078940:intron 30.0%
ATAGGACATCACATAATATG+CGG - chr7_2:77967038-77967057 None:intergenic 30.0%
ATCTATGAATCCAATGTTTG+TGG + chr7_2:77967152-77967171 Msa1078940:CDS 30.0%
AGTCCATTAGCAAAAGAAAA+TGG + chr7_2:77967657-77967676 Msa1078940:CDS 30.0%
!!! TTGCCATTTTCTTTTGCTAA+TGG - chr7_2:77967663-77967682 None:intergenic 30.0%
AGAAAATGGCAAACAAGAAA+AGG + chr7_2:77967671-77967690 Msa1078940:CDS 30.0%
GAAAATGGCAAACAAGAAAA+GGG + chr7_2:77967672-77967691 Msa1078940:CDS 30.0%
AAAATGGCAAACAAGAAAAG+GGG + chr7_2:77967673-77967692 Msa1078940:CDS 30.0%
AGGACAGAAATCATTAAAGT+AGG + chr7_2:77967849-77967868 Msa1078940:three_prime_UTR 30.0%
GAAACTCTTGATTCTAAATG+TGG + chr7_2:77968203-77968222 Msa1078940:three_prime_UTR 30.0%
! TCTGATTTTTCCCTCTTTAC+AGG + chr7_2:77964509-77964528 Msa1078940:five_prime_UTR 35.0%
AGGAACATGTATTAAAGGTG+TGG + chr7_2:77964529-77964548 Msa1078940:five_prime_UTR 35.0%
! CATGTATTAAAGGTGTGGTT+TGG + chr7_2:77964534-77964553 Msa1078940:five_prime_UTR 35.0%
!! TATTAAAGGTGTGGTTTGGT+TGG + chr7_2:77964538-77964557 Msa1078940:five_prime_UTR 35.0%
CATACTACTACTAATAGGGA+AGG + chr7_2:77964777-77964796 Msa1078940:intron 35.0%
ACTACTAATAGGGAAGGATT+AGG + chr7_2:77964783-77964802 Msa1078940:intron 35.0%
AAGGAATGCCAAGAAGATAA+TGG + chr7_2:77965033-77965052 Msa1078940:exon 35.0%
AGGAATGCCAAGAAGATAAT+GGG + chr7_2:77965034-77965053 Msa1078940:exon 35.0%
!! AAGAAGATAATGGGGAAGAA+GGG + chr7_2:77965043-77965062 Msa1078940:exon 35.0%
AATTTAATATCTTCTGGCGG+AGG - chr7_2:77965292-77965311 None:intergenic 35.0%
TGTTGCTGAAATTACAACTG+TGG + chr7_2:77965345-77965364 Msa1078940:CDS 35.0%
! TCATTTTGCTGGTAAACCAA+AGG + chr7_2:77965435-77965454 Msa1078940:CDS 35.0%
! CAAGATTCAAACAGCTTTTC+GGG + chr7_2:77965474-77965493 Msa1078940:CDS 35.0%
! AAGATTCAAACAGCTTTTCG+GGG + chr7_2:77965475-77965494 Msa1078940:CDS 35.0%
!! CAGAATAATGAGGCTTTAAG+AGG + chr7_2:77965635-77965654 Msa1078940:intron 35.0%
AAAAGACAGTTTAGTCCGAA+AGG - chr7_2:77965704-77965723 None:intergenic 35.0%
GGTGAGATTGAAAACATTGA+TGG + chr7_2:77965768-77965787 Msa1078940:CDS 35.0%
AAACGAAGTCAAATAAGCGT+TGG - chr7_2:77966016-77966035 None:intergenic 35.0%
ATTATAGATTGGGGAGGAAT+GGG + chr7_2:77966066-77966085 Msa1078940:intron 35.0%
CTCATACTTGCTCAGTAATT+TGG - chr7_2:77966125-77966144 None:intergenic 35.0%
CAAATTACTGAGCAAGTATG+AGG + chr7_2:77966123-77966142 Msa1078940:CDS 35.0%
CTTGTTAACTTAGATATGCG+AGG + chr7_2:77966206-77966225 Msa1078940:intron 35.0%
CAGAACATAACATGAAAGCT+TGG - chr7_2:77966314-77966333 None:intergenic 35.0%
CAAGCTTTCATGTTATGTTC+TGG + chr7_2:77966312-77966331 Msa1078940:intron 35.0%
ATATGTCAACGACCATTGAT+CGG + chr7_2:77966378-77966397 Msa1078940:intron 35.0%
AACTGCTGATGAGAAAATCA+CGG - chr7_2:77966476-77966495 None:intergenic 35.0%
CAACAACTTCAAGTAGGATA+AGG - chr7_2:77966564-77966583 None:intergenic 35.0%
AAAGAGCAACAACTTCAAGT+AGG - chr7_2:77966570-77966589 None:intergenic 35.0%
! GTGAAGAAAGGTGACAATTT+TGG - chr7_2:77966657-77966676 None:intergenic 35.0%
TAGAAGAGGATGAAAACAAG+AGG + chr7_2:77966705-77966724 Msa1078940:intron 35.0%
AGAAGAGGATGAAAACAAGA+GGG + chr7_2:77966706-77966725 Msa1078940:intron 35.0%
GAAGATAGTGACTACATGAA+AGG - chr7_2:77966857-77966876 None:intergenic 35.0%
AAAAAAATCAACGTGGCAGT+GGG - chr7_2:77966919-77966938 None:intergenic 35.0%
AATGTATTTCAGAGTTGAGC+TGG - chr7_2:77967344-77967363 None:intergenic 35.0%
TCCATCAGTTCCAAGTTATA+TGG + chr7_2:77967590-77967609 Msa1078940:CDS 35.0%
ACCATATAACTTGGAACTGA+TGG - chr7_2:77967594-77967613 None:intergenic 35.0%
ATTCTTTACCATTGACCTTG+AGG + chr7_2:77968043-77968062 Msa1078940:three_prime_UTR 35.0%
TTCTTTACCATTGACCTTGA+GGG + chr7_2:77968044-77968063 Msa1078940:three_prime_UTR 35.0%
! CTTGTTGATGAAACACAGAA+TGG - chr7_2:77968126-77968145 None:intergenic 35.0%
CATTCTGTGTTTCATCAACA+AGG + chr7_2:77968124-77968143 Msa1078940:three_prime_UTR 35.0%
! TCTCTTGAAGAAGGTGCAAT+GGG - chr7_2:77964656-77964675 None:intergenic 40.0%
GGAAGGATTAGGAGTTTGAA+TGG + chr7_2:77964794-77964813 Msa1078940:intron 40.0%
GGAATGCCAAGAAGATAATG+GGG + chr7_2:77965035-77965054 Msa1078940:exon 40.0%
CTTCTTCCCCATTATCTTCT+TGG - chr7_2:77965044-77965063 None:intergenic 40.0%
!! CAAGAAGATAATGGGGAAGA+AGG + chr7_2:77965042-77965061 Msa1078940:exon 40.0%
TAATGGGGAAGAAGGGAAAT+TGG + chr7_2:77965050-77965069 Msa1078940:exon 40.0%
!! CTGTATCGATTTCTACAGAG+GGG - chr7_2:77965258-77965277 None:intergenic 40.0%
!! GCTGTATCGATTTCTACAGA+GGG - chr7_2:77965259-77965278 None:intergenic 40.0%
!! TGCTGTATCGATTTCTACAG+AGG - chr7_2:77965260-77965279 None:intergenic 40.0%
TGCTGAAATTACAACTGTGG+TGG + chr7_2:77965348-77965367 Msa1078940:CDS 40.0%
TGGTAAACCAAAGGATGAAG+TGG + chr7_2:77965444-77965463 Msa1078940:CDS 40.0%
!! TTTAGGCAAGAAGAGCATTG+CGG + chr7_2:77965731-77965750 Msa1078940:intron 40.0%
!! ATGGCTTGGCGTTTTACAAT+CGG - chr7_2:77965799-77965818 None:intergenic 40.0%
TGCAATCTCAGATTCGTTCT+AGG + chr7_2:77965854-77965873 Msa1078940:CDS 40.0%
! AATCTCAGATTCGTTCTAGG+AGG + chr7_2:77965857-77965876 Msa1078940:CDS 40.0%
!! ATCTCAGATTCGTTCTAGGA+GGG + chr7_2:77965858-77965877 Msa1078940:CDS 40.0%
CAGAATGTTAGAGGAGAATC+AGG + chr7_2:77965882-77965901 Msa1078940:CDS 40.0%
CATTATAGATTGGGGAGGAA+TGG + chr7_2:77966065-77966084 Msa1078940:intron 40.0%
ACTGCTGATGAGAAAATCAC+GGG - chr7_2:77966475-77966494 None:intergenic 40.0%
GAAGAGGATGAAAACAAGAG+GGG + chr7_2:77966707-77966726 Msa1078940:intron 40.0%
AAGAGGATGAAAACAAGAGG+GGG + chr7_2:77966708-77966727 Msa1078940:intron 40.0%
AGAGGTTTAAGCAGAGGAAA+TGG - chr7_2:77966884-77966903 None:intergenic 40.0%
CAAAAAAATCAACGTGGCAG+TGG - chr7_2:77966920-77966939 None:intergenic 40.0%
GTTCTTTATCAACAACGCCA+CGG - chr7_2:77967245-77967264 None:intergenic 40.0%
TTTCTCCACCTATAATGCTG+CGG - chr7_2:77967299-77967318 None:intergenic 40.0%
TTTCAGAGTTGAGCTGGAAA+CGG - chr7_2:77967338-77967357 None:intergenic 40.0%
GTTGAATTGGACTGAAAGCT+GGG - chr7_2:77967396-77967415 None:intergenic 40.0%
AGTTGAATTGGACTGAAAGC+TGG - chr7_2:77967397-77967416 None:intergenic 40.0%
CAATTCAACTCCTACTAAGC+CGG + chr7_2:77967407-77967426 Msa1078940:CDS 40.0%
AATTCAACTCCTACTAAGCC+GGG + chr7_2:77967408-77967427 Msa1078940:CDS 40.0%
AGTTGCTAGGAAACTGAAGA+AGG + chr7_2:77967440-77967459 Msa1078940:CDS 40.0%
ATCATCTCTAACTGATGACC+CGG - chr7_2:77967553-77967572 None:intergenic 40.0%
AAACAAGAAAAGGGGTCCTT+TGG + chr7_2:77967681-77967700 Msa1078940:CDS 40.0%
TTTATGGCGGTTTCTACCTT+CGG - chr7_2:77967771-77967790 None:intergenic 40.0%
AGGTAACTCTGCATTTATGG+CGG - chr7_2:77967784-77967803 None:intergenic 40.0%
CACAGGTAACTCTGCATTTA+TGG - chr7_2:77967787-77967806 None:intergenic 40.0%
TCTTTACCATTGACCTTGAG+GGG + chr7_2:77968045-77968064 Msa1078940:three_prime_UTR 40.0%
AACCAAATTTCTTCCCCTCA+AGG - chr7_2:77968061-77968080 None:intergenic 40.0%
GGTTCATGTTGATCTTGTGA+CGG + chr7_2:77968077-77968096 Msa1078940:three_prime_UTR 40.0%
GTTCATGTTGATCTTGTGAC+GGG + chr7_2:77968078-77968097 Msa1078940:three_prime_UTR 40.0%
TCTGTGTTTCATCAACAAGG+AGG + chr7_2:77968127-77968146 Msa1078940:three_prime_UTR 40.0%
! CTCTCTTGAAGAAGGTGCAA+TGG - chr7_2:77964657-77964676 None:intergenic 45.0%
! GCTGCAGTTTCTCATTTTGC+TGG + chr7_2:77965424-77965443 Msa1078940:CDS 45.0%
! ATTGCTGCCACTTCATCCTT+TGG - chr7_2:77965454-77965473 None:intergenic 45.0%
!! AACAGCTTTTCGGGGATACT+TGG + chr7_2:77965483-77965502 Msa1078940:CDS 45.0%
!! TTAGGCAAGAAGAGCATTGC+GGG + chr7_2:77965732-77965751 Msa1078940:intron 45.0%
TAGGAGGGTCAGAATGTTAG+AGG + chr7_2:77965873-77965892 Msa1078940:CDS 45.0%
! TATGCGAAGAGAAAGAGCAC+TGG + chr7_2:77966150-77966169 Msa1078940:CDS 45.0%
GGCTTATGCATTCACTCATC+AGG + chr7_2:77966171-77966190 Msa1078940:CDS 45.0%
TTGGTGGGATCCACAAACAT+TGG - chr7_2:77967165-77967184 None:intergenic 45.0%
TTCAGAGTTGAGCTGGAAAC+GGG - chr7_2:77967337-77967356 None:intergenic 45.0%
CGGCTTAGTAGGAGTTGAAT+TGG - chr7_2:77967409-77967428 None:intergenic 45.0%
TCCAAAGGGAAGTTGGGTTA+TGG + chr7_2:77967467-77967486 Msa1078940:CDS 45.0%
TCCATAACCCAACTTCCCTT+TGG - chr7_2:77967471-77967490 None:intergenic 45.0%
GGATGATGACTCCAAAAGCA+TGG + chr7_2:77967488-77967507 Msa1078940:CDS 45.0%
! CTGTACACTTGCCATGCTTT+TGG - chr7_2:77967502-77967521 None:intergenic 45.0%
TGGCAAGTGTACAGTCAGAT+CGG + chr7_2:77967508-77967527 Msa1078940:CDS 45.0%
TGAGTCGGCACCATATAACT+TGG - chr7_2:77967603-77967622 None:intergenic 45.0%
! CTAGCTTTCGCAGATTGAGT+CGG - chr7_2:77967618-77967637 None:intergenic 45.0%
!! GAAAAAGCGCCTTTCTTACC+CGG + chr7_2:77967710-77967729 Msa1078940:CDS 45.0%
TTTCTTCCCCTCAAGGTCAA+TGG - chr7_2:77968054-77968073 None:intergenic 45.0%
GACCTTGAGGGGAAGAAATT+TGG + chr7_2:77968056-77968075 Msa1078940:three_prime_UTR 45.0%
!!! ATTTTAATTATAATTACAAA+AGG - chr7_2:77966787-77966806 None:intergenic 5.0%
ATATCTTCTGGCGGAGGAAG+AGG - chr7_2:77965286-77965305 None:intergenic 50.0%
!! TACAACTGTGGTGGATGTCG+AGG + chr7_2:77965357-77965376 Msa1078940:CDS 50.0%
GCTGTCTGAACAGAACGAAC+AGG - chr7_2:77965385-77965404 None:intergenic 50.0%
!! AGAGCATTGCGGGCTTTAAG+AGG + chr7_2:77965742-77965761 Msa1078940:CDS 50.0%
!! GAGCATTGCGGGCTTTAAGA+GGG + chr7_2:77965743-77965762 Msa1078940:CDS 50.0%
TAACGTCTGCATTGAGCGGA+GGG - chr7_2:77965827-77965846 None:intergenic 50.0%
GAGCTAACGTCTGCATTGAG+CGG - chr7_2:77965831-77965850 None:intergenic 50.0%
! AGCTCTTACAGAAGCACGCA+AGG + chr7_2:77965917-77965936 Msa1078940:CDS 50.0%
! GCTCTTACAGAAGCACGCAA+GGG + chr7_2:77965918-77965937 Msa1078940:CDS 50.0%
CAAGGGAGCTTGAAACCATG+CGG + chr7_2:77965935-77965954 Msa1078940:CDS 50.0%
AAGGGAGCTTGAAACCATGC+GGG + chr7_2:77965936-77965955 Msa1078940:CDS 50.0%
AGCTTGAAACCATGCGGGTA+TGG + chr7_2:77965941-77965960 Msa1078940:intron 50.0%
GCTTGAAACCATGCGGGTAT+GGG + chr7_2:77965942-77965961 Msa1078940:intron 50.0%
GAAAGAAACCCATACCCGCA+TGG - chr7_2:77965953-77965972 None:intergenic 50.0%
GGTTGCAGAGGTTTAAGCAG+AGG - chr7_2:77966890-77966909 None:intergenic 50.0%
AATCAACGTGGCAGTGGGAA+AGG - chr7_2:77966914-77966933 None:intergenic 50.0%
TGGATCCCACCAATCCTACT+TGG + chr7_2:77967172-77967191 Msa1078940:CDS 50.0%
GGATCCCACCAATCCTACTT+GGG + chr7_2:77967173-77967192 Msa1078940:CDS 50.0%
GATCCCACCAATCCTACTTG+GGG + chr7_2:77967174-77967193 Msa1078940:CDS 50.0%
ATCCCACCAATCCTACTTGG+GGG + chr7_2:77967175-77967194 Msa1078940:CDS 50.0%
GAGCTGGATAGAACGATGGA+TGG + chr7_2:77967200-77967219 Msa1078940:CDS 50.0%
AGTTCGAGCCGCAGCATTAT+AGG + chr7_2:77967288-77967307 Msa1078940:CDS 50.0%
CTAGCAACTGAAGCAGAACC+CGG - chr7_2:77967429-77967448 None:intergenic 50.0%
ACTGAAGAAGGCGAGTCCAA+AGG + chr7_2:77967452-77967471 Msa1078940:CDS 50.0%
CTGAAGAAGGCGAGTCCAAA+GGG + chr7_2:77967453-77967472 Msa1078940:CDS 50.0%
CGACTCAATCTGCGAAAGCT+AGG + chr7_2:77967616-77967635 Msa1078940:CDS 50.0%
!!! GCGCTTTTTCGCAGTTCCAA+AGG - chr7_2:77967700-77967719 None:intergenic 50.0%
GCAGAGTTACCTGTGAGCAA+TGG + chr7_2:77967792-77967811 Msa1078940:CDS 50.0%
GTTACCTGTGAGCAATGGTG+TGG + chr7_2:77967797-77967816 Msa1078940:CDS 50.0%
! CATGTTGATCTTGTGACGGG+AGG + chr7_2:77968081-77968100 Msa1078940:three_prime_UTR 50.0%
AGCTCTCAGCCCTGACTCAA+AGG + chr7_2:77965090-77965109 Msa1078940:CDS 55.0%
!! ATTGCGGGCTTTAAGAGGGC+TGG + chr7_2:77965747-77965766 Msa1078940:CDS 55.0%
!! CATTGAGCGGAGGGTACTCA+TGG - chr7_2:77965818-77965837 None:intergenic 55.0%
CTAACGTCTGCATTGAGCGG+AGG - chr7_2:77965828-77965847 None:intergenic 55.0%
AGTGGGAAAGGAGGTTGCAG+AGG - chr7_2:77966902-77966921 None:intergenic 55.0%
! CACCCCCAAGTAGGATTGGT+GGG - chr7_2:77967180-77967199 None:intergenic 55.0%
GGTGGAGCTGGATAGAACGA+TGG + chr7_2:77967196-77967215 Msa1078940:CDS 55.0%
TCGAGCCGCAGCATTATAGG+TGG + chr7_2:77967291-77967310 Msa1078940:CDS 55.0%
!!! CCAGGATTTTGGCTCGCTAC+TGG - chr7_2:77967369-77967388 None:intergenic 55.0%
CCAGTAGCGAGCCAAAATCC+TGG + chr7_2:77967366-77967385 Msa1078940:CDS 55.0%
! AGCTGGGTGAGCCAGGATTT+TGG - chr7_2:77967380-77967399 None:intergenic 55.0%
GAAGCAGAACCCGGCTTAGT+AGG - chr7_2:77967420-77967439 None:intergenic 55.0%
CGGGTTCTGCTTCAGTTGCT+AGG + chr7_2:77967427-77967446 Msa1078940:CDS 55.0%
AGGCGAGTCCAAAGGGAAGT+TGG + chr7_2:77967460-77967479 Msa1078940:CDS 55.0%
GGCGAGTCCAAAGGGAAGTT+GGG + chr7_2:77967461-77967480 Msa1078940:CDS 55.0%
! TACAGTCAGATCGGTTCCGC+AGG + chr7_2:77967517-77967536 Msa1078940:CDS 55.0%
TTCCGCAGGCACTCTATTGC+CGG + chr7_2:77967531-77967550 Msa1078940:CDS 55.0%
ATGGCGGTTTCTACCTTCGG+TGG - chr7_2:77967768-77967787 None:intergenic 55.0%
TCTTCTGGCGGAGGAAGAGG+CGG - chr7_2:77965283-77965302 None:intergenic 60.0%
!! AGCGGAGGGTACTCATGGCT+TGG - chr7_2:77965813-77965832 None:intergenic 60.0%
CAACGTGGCAGTGGGAAAGG+AGG - chr7_2:77966911-77966930 None:intergenic 60.0%
CCACCCCCAAGTAGGATTGG+TGG - chr7_2:77967181-77967200 None:intergenic 60.0%
CCACCAATCCTACTTGGGGG+TGG + chr7_2:77967178-77967197 Msa1078940:CDS 60.0%
GCTCCACCCCCAAGTAGGAT+TGG - chr7_2:77967184-77967203 None:intergenic 60.0%
ATCCTACTTGGGGGTGGAGC+TGG + chr7_2:77967184-77967203 Msa1078940:CDS 60.0%
ATCCAGCTCCACCCCCAAGT+AGG - chr7_2:77967189-77967208 None:intergenic 60.0%
ATGGATGGCTGCCCGACCTT+GGG + chr7_2:77967215-77967234 Msa1078940:CDS 60.0%
GACTGAAAGCTGGGTGAGCC+AGG - chr7_2:77967387-77967406 None:intergenic 60.0%
TCCGCAGGCACTCTATTGCC+GGG + chr7_2:77967532-77967551 Msa1078940:CDS 60.0%
! ACCCGGCAATAGAGTGCCTG+CGG - chr7_2:77967536-77967555 None:intergenic 60.0%
CAGGCGAAGCCGGGTAAGAA+AGG - chr7_2:77967722-77967741 None:intergenic 60.0%
GGTGGACCTGAATGACGCCT+TGG - chr7_2:77967750-77967769 None:intergenic 60.0%
GCGTCATTCAGGTCCACCGA+AGG + chr7_2:77967752-77967771 Msa1078940:CDS 60.0%
CTGGCCACACCATTGCTCAC+AGG - chr7_2:77967804-77967823 None:intergenic 60.0%
GATGGATGGCTGCCCGACCT+TGG + chr7_2:77967214-77967233 Msa1078940:CDS 65.0%
ACAACGCCACGGCTCTCCCA+AGG - chr7_2:77967234-77967253 None:intergenic 65.0%
GAATGACGCCTTGGCCTCGC+AGG - chr7_2:77967741-77967760 None:intergenic 65.0%
! GCGAGGCCAAGGCGTCATTC+AGG + chr7_2:77967741-77967760 Msa1078940:CDS 65.0%
GCCACGGCTCTCCCAAGGTC+GGG - chr7_2:77967229-77967248 None:intergenic 70.0%
CGCCACGGCTCTCCCAAGGT+CGG - chr7_2:77967230-77967249 None:intergenic 70.0%
CTTACCCGGCTTCGCCTGCG+AGG + chr7_2:77967724-77967743 Msa1078940:CDS 70.0%
TTGGCCTCGCAGGCGAAGCC+GGG - chr7_2:77967731-77967750 None:intergenic 70.0%
CTTGGCCTCGCAGGCGAAGC+CGG - chr7_2:77967732-77967751 None:intergenic 70.0%
GCCCGACCTTGGGAGAGCCG+TGG + chr7_2:77967225-77967244 Msa1078940:CDS 75.0%
CGGCTTCGCCTGCGAGGCCA+AGG + chr7_2:77967730-77967749 Msa1078940:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77964467 77968320 77964467 ID=Msa1078940;Name=Msa1078940
chr7_2 mRNA 77964467 77968320 77964467 ID=Msa1078940-mRNA-1;Parent=Msa1078940;Name=Msa1078940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=206|1|1|1|0.8|0.83|6|493|468
chr7_2 exon 77964467 77964644 77964467 ID=Msa1078940-mRNA-1:exon:19281;Parent=Msa1078940-mRNA-1
chr7_2 exon 77965024 77965111 77965024 ID=Msa1078940-mRNA-1:exon:19282;Parent=Msa1078940-mRNA-1
chr7_2 exon 77965199 77965504 77965199 ID=Msa1078940-mRNA-1:exon:19283;Parent=Msa1078940-mRNA-1
chr7_2 exon 77965736 77965957 77965736 ID=Msa1078940-mRNA-1:exon:19284;Parent=Msa1078940-mRNA-1
chr7_2 exon 77966073 77966192 77966073 ID=Msa1078940-mRNA-1:exon:19285;Parent=Msa1078940-mRNA-1
chr7_2 exon 77967129 77968320 77967129 ID=Msa1078940-mRNA-1:exon:19286;Parent=Msa1078940-mRNA-1
chr7_2 five_prime_UTR 77964467 77964644 77964467 ID=Msa1078940-mRNA-1:five_prime_utr;Parent=Msa1078940-mRNA-1
chr7_2 five_prime_UTR 77965024 77965051 77965024 ID=Msa1078940-mRNA-1:five_prime_utr;Parent=Msa1078940-mRNA-1
chr7_2 CDS 77965052 77965111 77965052 ID=Msa1078940-mRNA-1:cds;Parent=Msa1078940-mRNA-1
chr7_2 CDS 77965199 77965504 77965199 ID=Msa1078940-mRNA-1:cds;Parent=Msa1078940-mRNA-1
chr7_2 CDS 77965736 77965957 77965736 ID=Msa1078940-mRNA-1:cds;Parent=Msa1078940-mRNA-1
chr7_2 CDS 77966073 77966192 77966073 ID=Msa1078940-mRNA-1:cds;Parent=Msa1078940-mRNA-1
chr7_2 CDS 77967129 77967827 77967129 ID=Msa1078940-mRNA-1:cds;Parent=Msa1078940-mRNA-1
chr7_2 three_prime_UTR 77967828 77968320 77967828 ID=Msa1078940-mRNA-1:three_prime_utr;Parent=Msa1078940-mRNA-1
Gene Sequence

>Msa1078940

ATGGGGAAGAAGGGAAATTGGTTTTCTACAGTGAAGAAAGCTCTCAGCCCTGACTCAAAGAAATCAAGTAAATCAAAAAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGACCCCTCTGTAGAAATCGATACAGCACCGCCTCTTCCTCCGCCAGAAGATATTAAATTAACTGATATTGAAAATCAAAACAATCACCATCATGTTGCTGAAATTACAACTGTGGTGGATGTCGAGGAACCTGTTCGTTCTGTTCAGACAGCAGTTGTTAAGACTCAAGCTGCTGCAGTTTCTCATTTTGCTGGTAAACCAAAGGATGAAGTGGCAGCAATCAAGATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGAGGGCTGGTGAGATTGAAAACATTGATGGAAGGGCCGATTGTAAAACGCCAAGCCATGAGTACCCTCCGCTCAATGCAGACGTTAGCTCGTGTGCAATCTCAGATTCGTTCTAGGAGGGTCAGAATGTTAGAGGAGAATCAGGCTTTACAGAGACAGCTCTTACAGAAGCACGCAAGGGAGCTTGAAACCATGCGGATTGGGGAGGAATGGGACGATAGCCTACAATCTAAAGAACAAATTGAAGCCAAATTACTGAGCAAGTATGAGGCTACTATGCGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTCGAAGAACTCGTCTAGATCTATGAATCCAATGTTTGTGGATCCCACCAATCCTACTTGGGGGTGGAGCTGGATAGAACGATGGATGGCTGCCCGACCTTGGGAGAGCCGTGGCGTTGTTGATAAAGAACTGAATGATCATTCATCTGTTAAAAGTTCGAGCCGCAGCATTATAGGTGGAGAAATCAGCAAATCATTTGCCCGTTTCCAGCTCAACTCTGAAATACATTCTCCAGTAGCGAGCCAAAATCCTGGCTCACCCAGCTTTCAGTCCAATTCAACTCCTACTAAGCCGGGTTCTGCTTCAGTTGCTAGGAAACTGAAGAAGGCGAGTCCAAAGGGAAGTTGGGTTATGGATGATGACTCCAAAAGCATGGCAAGTGTACAGTCAGATCGGTTCCGCAGGCACTCTATTGCCGGGTCATCAGTTAGAGATGATGAGAGTCTTGCTAGCTCTCCATCAGTTCCAAGTTATATGGTGCCGACTCAATCTGCGAAAGCTAGGTTGAGAACACAAAGTCAAAGTCCATTAGCAAAAGAAAATGGCAAACAAGAAAAGGGGTCCTTTGGAACTGCGAAAAAGCGCCTTTCTTACCCGGCTTCGCCTGCGAGGCCAAGGCGTCATTCAGGTCCACCGAAGGTAGAAACCGCCATAAATGCAGAGTTACCTGTGAGCAATGGTGTGGCCAGTTGA
Protein sequence

>Msa1078940

MGKKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQTSDPSVEIDTAPPLPPPEDIKLTDIENQNNHHHVAEITTVVDVEEPVRSVQTAVVKTQAAAVSHFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRVRMLEENQALQRQLLQKHARELETMRIGEEWDDSLQSKEQIEAKLLSKYEATMRRERALAYAFTHQQNSKNSSRSMNPMFVDPTNPTWGWSWIERWMAARPWESRGVVDKELNDHSSVKSSSRSIIGGEISKSFARFQLNSEIHSPVASQNPGSPSFQSNSTPTKPGSASVARKLKKASPKGSWVMDDDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKARLRTQSQSPLAKENGKQEKGSFGTAKKRLSYPASPARPRRHSGPPKVETAINAELPVSNGVAS*