AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756440 MtrunA17_Chr5g0401491 99.359 312 2 0 1 312 1 312 0.0 637
Msa0756440 MtrunA17_Chr1g0151581 47.205 161 84 1 66 225 50 210 2.16e-43 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756440 AT5G67370.1 67.278 327 92 3 1 312 1 327 5.12e-147 416
Msa0756440 AT5G11840.1 39.370 254 139 7 12 262 11 252 1.64e-46 158
Msa0756440 AT5G11840.3 42.079 202 105 5 12 210 11 203 1.04e-40 141
Msa0756440 AT5G11840.4 43.684 190 95 5 12 198 11 191 7.55e-40 139
Msa0756440 AT5G11840.2 39.655 174 93 5 12 182 11 175 3.33e-29 111

Find 108 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTTAGTTATCTATTTC+AGG 0.204968 5_2:+10694237 None:intergenic
ATTAAAGTTAAGGCCATAAA+AGG 0.256213 5_2:-10696717 Msa0756440:CDS
TGTCAGCTCCTAGTTTATTA+TGG 0.285048 5_2:-10694068 Msa0756440:three_prime_UTR
GATTGTCTTGAGGATATATC+TGG 0.307364 5_2:-10695802 Msa0756440:intron
TGAAAACAACCTTGCTTTGT+TGG 0.310340 5_2:-10696900 Msa0756440:five_prime_UTR
AACGAACCATGGTTGCTTCC+CGG 0.333037 5_2:+10696786 None:intergenic
TGTTACATTTCGCAACTCTA+TGG 0.339497 5_2:-10694323 Msa0756440:three_prime_UTR
GCTGTATTCATGGGGAGAAC+TGG 0.347057 5_2:-10696150 Msa0756440:CDS
TTTACTTTGACTACGTTGAA+TGG 0.353446 5_2:+10694271 None:intergenic
CTAAAGCTTGCAGCTGCAAT+TGG 0.364895 5_2:+10696062 None:intergenic
CTGTTTATCTGCCTATATAC+TGG 0.369110 5_2:+10694210 None:intergenic
AAATTCGCACTTACTCTAGA+AGG 0.375714 5_2:+10696038 None:intergenic
GGAGAAACAAGTGGATCTTC+AGG 0.375718 5_2:-10696684 Msa0756440:CDS
TCAACACAAAGTACAATCTA+AGG 0.377796 5_2:-10694637 Msa0756440:intron
GCAAGTTCCATATGCATGTT+AGG 0.378055 5_2:-10694173 Msa0756440:three_prime_UTR
TGCTTCAGCAATTTAACAAC+TGG 0.384909 5_2:+10694791 None:intergenic
TCCTAGTTTATTATGGTAAA+GGG 0.385624 5_2:-10694061 Msa0756440:three_prime_UTR
TTTAGGCATTTGTAAAGGTA+TGG 0.391330 5_2:-10693968 Msa0756440:three_prime_UTR
CTCCTAGTTTATTATGGTAA+AGG 0.391688 5_2:-10694062 Msa0756440:three_prime_UTR
ACGGGTTTCCATTAAAGTTA+AGG 0.392385 5_2:-10696727 Msa0756440:CDS
TACCATCCACTTTCTTCATA+AGG 0.394550 5_2:+10695457 None:intergenic
GGAGAAGGAAGAGGAGGAAA+AGG 0.396271 5_2:+10696934 None:intergenic
GATCCTCCCATTTGCAGTAC+TGG 0.400519 5_2:+10694409 None:intergenic
CATACCGGTCTTTGCTCAAA+AGG 0.406196 5_2:+10696627 None:intergenic
GGGTCGTTCTTTCTTCGCCT+TGG 0.406243 5_2:-10696122 Msa0756440:CDS
TAACTAATAGAATAATGCTT+TGG 0.406729 5_2:+10694300 None:intergenic
AAATAAAGACTCCAGTATAT+AGG 0.410592 5_2:-10694221 Msa0756440:three_prime_UTR
TCATGGGGAGAACTGGGTCC+AGG 0.410922 5_2:-10696143 Msa0756440:CDS
TGCTAAAGTAAAGAACAAAA+AGG 0.411381 5_2:-10694386 Msa0756440:exon
GTGGATCTTCAGGAGGTAGC+TGG 0.417633 5_2:-10696674 Msa0756440:CDS
TTGCTGAAGCAAACTCTAGT+TGG 0.417913 5_2:-10694779 Msa0756440:CDS
TCTTGCAGCTGCTGCTGCTG+AGG 0.421207 5_2:-10694490 Msa0756440:CDS
AACTGCAAGACAAACTAAAC+CGG 0.436110 5_2:-10696805 Msa0756440:CDS
GCTGCTGCTGAGGCTGCAGA+TGG 0.438479 5_2:-10694480 Msa0756440:CDS
CAGGAGGCCAGTACTGCAAA+TGG 0.438936 5_2:-10694416 Msa0756440:CDS
TTCTTCGCCTTGGAGGTCTC+TGG 0.439796 5_2:-10696112 Msa0756440:CDS
TTTATACTAGCTGCTGGAAC+AGG 0.441314 5_2:-10695846 Msa0756440:CDS
CCTAGCTCGTGATAGATTGT+TGG 0.448412 5_2:-10694958 Msa0756440:CDS
TAAATATGTATAATCTTATC+CGG 0.450407 5_2:+10694133 None:intergenic
CTAGCTCGTGATAGATTGTT+GGG 0.458803 5_2:-10694957 Msa0756440:CDS
GGGACTTCAATTTCCAATCC+AGG 0.460451 5_2:+10696648 None:intergenic
CAGTATATAGGCAGATAAAC+AGG 0.461166 5_2:-10694209 Msa0756440:three_prime_UTR
GGTTTAGTTTGTCTTGCAGT+TGG 0.461505 5_2:+10696807 None:intergenic
TCAGGAGGTAGCTGGGATCC+TGG 0.464576 5_2:-10696666 Msa0756440:CDS
TTGTACTTTGTGTTGACCTT+GGG 0.465912 5_2:+10694644 None:intergenic
TTGGCAGTGTTCACAGTGCT+TGG 0.468253 5_2:-10696089 Msa0756440:CDS
AGGATGGAATGCTGTATTCA+TGG 0.479665 5_2:-10696160 Msa0756440:CDS
TAGATTGTTGGGCTCTTACA+AGG 0.485638 5_2:-10694946 Msa0756440:intron
AACCTATCTCTACAGTATAC+TGG 0.487242 5_2:+10694453 None:intergenic
GAAGGAAGAGGAGGAAAAGG+AGG 0.488611 5_2:+10696937 None:intergenic
ACTGGAGCATTGCTTGTCAC+TGG 0.490569 5_2:-10694755 Msa0756440:CDS
TGCTGAAGCAAACTCTAGTT+GGG 0.491191 5_2:-10694778 Msa0756440:CDS
CTTGTGTCCTAACATGCATA+TGG 0.494184 5_2:+10694166 None:intergenic
TTAGGCATTTGTAAAGGTAT+GGG 0.498863 5_2:-10693967 Msa0756440:three_prime_UTR
TCTTTACTTGGAGAAGGAAG+AGG 0.499084 5_2:+10696925 None:intergenic
TCGTTCTTTCTTCGCCTTGG+AGG 0.501822 5_2:-10696119 Msa0756440:CDS
TTCAATTCTTTACTTGGAGA+AGG 0.504464 5_2:+10696919 None:intergenic
CTGTATTCATGGGGAGAACT+GGG 0.507278 5_2:-10696149 Msa0756440:CDS
GTCATTCCTTATGAAGAAAG+TGG 0.511705 5_2:-10695463 Msa0756440:CDS
TCGTCCGCTTTCACATCTGC+AGG 0.511726 5_2:+10694516 None:intergenic
GCCATAAAAGGTGAGATGAA+TGG 0.514026 5_2:-10696705 Msa0756440:CDS
CTGAGATTTATACTAGCTGC+TGG 0.524640 5_2:-10695852 Msa0756440:CDS
AAATGAGTACTCATCTTTGA+AGG 0.527068 5_2:-10696180 Msa0756440:CDS
AAGCAAACTCTAGTTGGGAC+TGG 0.534146 5_2:-10694773 Msa0756440:CDS
GGACACAAGTCCGTGGAAGC+CGG 0.535146 5_2:-10694152 Msa0756440:three_prime_UTR
GGACATTTAGGCATTTGTAA+AGG 0.537925 5_2:-10693973 Msa0756440:three_prime_UTR
GACCAGTATACTGTAGAGAT+AGG 0.539279 5_2:-10694455 Msa0756440:CDS
AGGTAGCTGGGATCCTGGAT+TGG 0.543722 5_2:-10696661 Msa0756440:CDS
TGGATCTTCAGGAGGTAGCT+GGG 0.548745 5_2:-10696673 Msa0756440:CDS
TTGTGTCTTTGATTGTCTTG+AGG 0.548909 5_2:-10695812 Msa0756440:CDS
GAGTACTCATCTTTGAAGGA+TGG 0.549927 5_2:-10696176 Msa0756440:CDS
TCCCTTTACCATAATAAACT+AGG 0.550803 5_2:+10694060 None:intergenic
GTTGACCTTGGGAACTTGAA+CGG 0.554757 5_2:+10694655 None:intergenic
TTCTTCGTTATTATAACACA+TGG 0.555929 5_2:+10694105 None:intergenic
ATTGTACTTTGTGTTGACCT+TGG 0.556950 5_2:+10694643 None:intergenic
ATACCGGTCTTTGCTCAAAA+GGG 0.558808 5_2:+10696628 None:intergenic
AGGAGGCCAGTACTGCAAAT+GGG 0.560894 5_2:-10694415 Msa0756440:CDS
GAATGAAGAAAATTCTCCAC+TGG 0.565797 5_2:+10694707 None:intergenic
CCAACAATCTATCACGAGCT+AGG 0.567433 5_2:+10694958 None:intergenic
ATTTATCTTTGCTACACCAG+TGG 0.569868 5_2:-10694723 Msa0756440:CDS
ATAATAACGAAGAAAACTAC+AGG 0.573134 5_2:-10694096 Msa0756440:three_prime_UTR
TCGCCTTGGAGGTCTCTGGT+TGG 0.574053 5_2:-10696108 Msa0756440:CDS
TTACTTGGAGAAGGAAGAGG+AGG 0.575146 5_2:+10696928 None:intergenic
GAAGAAAGTGGATGGTATGA+CGG 0.576103 5_2:-10695451 Msa0756440:CDS
ATAATCTTATCCGGCTTCCA+CGG 0.583764 5_2:+10694142 None:intergenic
GGATGGAATGCTGTATTCAT+GGG 0.587098 5_2:-10696159 Msa0756440:CDS
CATGGGGAGAACTGGGTCCA+GGG 0.587436 5_2:-10696142 Msa0756440:CDS
ATGAGTAAACCAACAAAGCA+AGG 0.599136 5_2:+10696891 None:intergenic
ATCAACCGTTCAAGTTCCCA+AGG 0.607453 5_2:-10694660 Msa0756440:CDS
TTCCTTATGAAGAAAGTGGA+TGG 0.609524 5_2:-10695459 Msa0756440:CDS
ATGCAGGGGTGGAGTTATGT+TGG 0.613989 5_2:-10695505 Msa0756440:intron
AGGCGAAGAAAGAACGACCC+TGG 0.620568 5_2:+10696125 None:intergenic
ACTAAACCGGGAAGCAACCA+TGG 0.621555 5_2:-10696792 Msa0756440:CDS
TAATGTGTACTGTAGAAAGG+AGG 0.641199 5_2:-10694553 Msa0756440:intron
TTTGGATGATGAACGAACCA+TGG 0.644971 5_2:+10696775 None:intergenic
CATGTTAGGACACAAGTCCG+TGG 0.645846 5_2:-10694159 Msa0756440:three_prime_UTR
ACTGCAAGACAAACTAAACC+GGG 0.646464 5_2:-10696804 Msa0756440:CDS
ATTGCCTGCAGATGTGAAAG+CGG 0.647332 5_2:-10694520 Msa0756440:CDS
GATGTGGGTCAAGCCGCCCG+AGG 0.654400 5_2:-10695425 Msa0756440:intron
ATGGTATGACGGACAGATGT+GGG 0.654790 5_2:-10695440 Msa0756440:CDS
GAGATGAATGGAGAAACAAG+TGG 0.659434 5_2:-10696693 Msa0756440:CDS
GTTAAGAGACTAACCTCGGG+CGG 0.676465 5_2:+10695412 None:intergenic
CTGCCAACCAGAGACCTCCA+AGG 0.677013 5_2:+10696105 None:intergenic
AGGCCAGTACTGCAAATGGG+AGG 0.682389 5_2:-10694412 Msa0756440:CDS
GATGGTATGACGGACAGATG+TGG 0.687282 5_2:-10695441 Msa0756440:CDS
GATGGAATGCTGTATTCATG+GGG 0.687693 5_2:-10696158 Msa0756440:CDS
GAAACAAGTGGATCTTCAGG+AGG 0.690118 5_2:-10696681 Msa0756440:CDS
GCAGCTAGTATAAATCTCAG+AGG 0.718109 5_2:+10695855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAATTACAAATAAT+TGG - chr5_2:10693961-10693980 Msa0756440:three_prime_UTR 10.0%
!! ATGAGAAAAAATCAAAATAT+TGG - chr5_2:10694563-10694582 Msa0756440:intron 15.0%
!!! TATAAGAAACATTTTTTAGT+GGG + chr5_2:10694739-10694758 None:intergenic 15.0%
!!! TTATAAGAAACATTTTTTAG+TGG + chr5_2:10694740-10694759 None:intergenic 15.0%
!! TTTATTTAGTTATCTATTTC+AGG + chr5_2:10696746-10696765 None:intergenic 15.0%
!! TAAATATGTATAATCTTATC+CGG + chr5_2:10696850-10696869 None:intergenic 15.0%
!! AAACAAAAAATTGTTCATAT+TGG + chr5_2:10696985-10697004 None:intergenic 15.0%
!!! ATATGAACAATTTTTTGTTT+TGG - chr5_2:10696985-10697004 Msa0756440:five_prime_UTR 15.0%
!!! TATGAACAATTTTTTGTTTT+GGG - chr5_2:10696986-10697005 Msa0756440:five_prime_UTR 15.0%
!! ATGCAATATCAAAGTTTATT+TGG + chr5_2:10694439-10694458 None:intergenic 20.0%
!! AAATAAACTTTGATATTGCA+TGG - chr5_2:10694438-10694457 Msa0756440:CDS 20.0%
!!! TAAAAGAAAGTATCAGAAAA+AGG - chr5_2:10694539-10694558 Msa0756440:CDS 20.0%
!! ATATTAGAGTATGTATTTCA+TGG - chr5_2:10694596-10694615 Msa0756440:intron 20.0%
!! AAGTATATGTGTATAATGAT+TGG - chr5_2:10694967-10694986 Msa0756440:intron 20.0%
!! AGTATATGTGTATAATGATT+GGG - chr5_2:10694968-10694987 Msa0756440:intron 20.0%
!!! TTTTTACTTTTAGGTAAAAG+AGG + chr5_2:10695609-10695628 None:intergenic 20.0%
!!! CTTACAATTTTAAAGACAAA+AGG + chr5_2:10695827-10695846 None:intergenic 20.0%
!!! GCTTCATTTCTTTAAATTTT+TGG - chr5_2:10695965-10695984 Msa0756440:intron 20.0%
!! CATTAAAAGTTTCAATGATA+TGG + chr5_2:10696412-10696431 None:intergenic 20.0%
!! TAACTAATAGAATAATGCTT+TGG + chr5_2:10696683-10696702 None:intergenic 20.0%
!!! TTATGCACACTTTTTTTCTT+AGG + chr5_2:10694011-10694030 None:intergenic 25.0%
!!! GTTGTTTTCAATTCTTTACT+TGG + chr5_2:10694070-10694089 None:intergenic 25.0%
!!! TTTTATGGCCTTAACTTTAA+TGG + chr5_2:10694264-10694283 None:intergenic 25.0%
! ATTAAAGTTAAGGCCATAAA+AGG - chr5_2:10694263-10694282 Msa0756440:three_prime_UTR 25.0%
! TAAAAAGAACAGAGATAGAA+AGG - chr5_2:10694493-10694512 Msa0756440:CDS 25.0%
! AAAAAGAACAGAGATAGAAA+GGG - chr5_2:10694494-10694513 Msa0756440:CDS 25.0%
! TATAACATTTCATGCTAACT+TGG - chr5_2:10694755-10694774 Msa0756440:CDS 25.0%
! ATCCCAATCATTTCATTATT+GGG - chr5_2:10695230-10695249 Msa0756440:intron 25.0%
! TTTATTGCATTTAACCTAGT+GGG - chr5_2:10695324-10695343 Msa0756440:intron 25.0%
!!! GGACTTTTGTTTTTACTTTT+AGG + chr5_2:10695618-10695637 None:intergenic 25.0%
!!! GTCTTTAAAATTGTAAGAGA+TGG - chr5_2:10695830-10695849 Msa0756440:CDS 25.0%
! ACTCATTAAGCTGAATAATT+AGG - chr5_2:10696089-10696108 Msa0756440:CDS 25.0%
! TAAAAGTTTCAATGATATGG+TGG + chr5_2:10696409-10696428 None:intergenic 25.0%
!! TTTTAATGTGTACTGTAGAA+AGG - chr5_2:10696424-10696443 Msa0756440:intron 25.0%
! TGCTAAAGTAAAGAACAAAA+AGG - chr5_2:10696594-10696613 Msa0756440:intron 25.0%
! AAATAAAGACTCCAGTATAT+AGG - chr5_2:10696759-10696778 Msa0756440:CDS 25.0%
! TTCTTCGTTATTATAACACA+TGG + chr5_2:10696878-10696897 None:intergenic 25.0%
! ATAATAACGAAGAAAACTAC+AGG - chr5_2:10696884-10696903 Msa0756440:five_prime_UTR 25.0%
! TCCTAGTTTATTATGGTAAA+GGG - chr5_2:10696919-10696938 Msa0756440:five_prime_UTR 25.0%
!!! TTTTTTGTTTTGGGACATTT+AGG - chr5_2:10696995-10697014 Msa0756440:five_prime_UTR 25.0%
TTCAATTCTTTACTTGGAGA+AGG + chr5_2:10694064-10694083 None:intergenic 30.0%
!!! ATTTTGAAGCTCTTGGATTT+TGG + chr5_2:10694226-10694245 None:intergenic 30.0%
!!! TGAGAAAATTTTGAAGCTCT+TGG + chr5_2:10694233-10694252 None:intergenic 30.0%
! GAGCTTCAAAATTTTCTCAA+CGG - chr5_2:10694234-10694253 Msa0756440:three_prime_UTR 30.0%
! AGCTTCAAAATTTTCTCAAC+GGG - chr5_2:10694235-10694254 Msa0756440:three_prime_UTR 30.0%
TTGATATTGCATGGTGTAAT+AGG - chr5_2:10694447-10694466 Msa0756440:CDS 30.0%
AAATGAGTACTCATCTTTGA+AGG - chr5_2:10694800-10694819 Msa0756440:CDS 30.0%
CATCCCAATCATTTCATTAT+TGG - chr5_2:10695229-10695248 Msa0756440:intron 30.0%
TCCCAATCATTTCATTATTG+GGG - chr5_2:10695231-10695250 Msa0756440:intron 30.0%
TCCCCAATAATGAAATGATT+GGG + chr5_2:10695235-10695254 None:intergenic 30.0%
ATCCCCAATAATGAAATGAT+TGG + chr5_2:10695236-10695255 None:intergenic 30.0%
ATTTCATTATTGGGGATCAT+GGG - chr5_2:10695239-10695258 Msa0756440:intron 30.0%
CTTTATTGCATTTAACCTAG+TGG - chr5_2:10695323-10695342 Msa0756440:intron 30.0%
ACTGTGGTTAAGAAATTAAC+TGG - chr5_2:10695446-10695465 Msa0756440:CDS 30.0%
TTAGATAAAGACAAGACCAT+TGG - chr5_2:10695739-10695758 Msa0756440:intron 30.0%
AACCTATTGTTTATTCTCTC+TGG + chr5_2:10695800-10695819 None:intergenic 30.0%
GAGAGAATAAACAATAGGTT+AGG - chr5_2:10695800-10695819 Msa0756440:intron 30.0%
ACAAGCAGTCTATTCAAAAT+TGG - chr5_2:10695867-10695886 Msa0756440:intron 30.0%
! ATTTAACAACTGGTTTAACC+TGG + chr5_2:10696182-10696201 None:intergenic 30.0%
!! GGTTGATTTATTTTCTTCTG+TGG + chr5_2:10696307-10696326 None:intergenic 30.0%
TCAACACAAAGTACAATCTA+AGG - chr5_2:10696343-10696362 Msa0756440:intron 30.0%
! ACAAAGTACAATCTAAGGTA+AGG - chr5_2:10696348-10696367 Msa0756440:intron 30.0%
TTTACTTTGACTACGTTGAA+TGG + chr5_2:10696712-10696731 None:intergenic 30.0%
CTCCTAGTTTATTATGGTAA+AGG - chr5_2:10696918-10696937 Msa0756440:five_prime_UTR 30.0%
TCCCTTTACCATAATAAACT+AGG + chr5_2:10696923-10696942 None:intergenic 30.0%
TTTAGGCATTTGTAAAGGTA+TGG - chr5_2:10697012-10697031 Msa0756440:five_prime_UTR 30.0%
! TTAGGCATTTGTAAAGGTAT+GGG - chr5_2:10697013-10697032 Msa0756440:five_prime_UTR 30.0%
TGAAAACAACCTTGCTTTGT+TGG - chr5_2:10694080-10694099 Msa0756440:three_prime_UTR 35.0%
ATGAGTAAACCAACAAAGCA+AGG + chr5_2:10694092-10694111 None:intergenic 35.0%
AACTGCAAGACAAACTAAAC+CGG - chr5_2:10694175-10694194 Msa0756440:three_prime_UTR 35.0%
ACGGGTTTCCATTAAAGTTA+AGG - chr5_2:10694253-10694272 Msa0756440:three_prime_UTR 35.0%
! TCCATTCATCTCACCTTTTA+TGG + chr5_2:10694279-10694298 None:intergenic 35.0%
GTAGTTGTCTACATACATAC+CGG + chr5_2:10694371-10694390 None:intergenic 35.0%
GTGTAATAGGATATTCCCTT+TGG - chr5_2:10694460-10694479 Msa0756440:CDS 35.0%
! TTTTAACCTCTCAGTCCAAA+GGG + chr5_2:10694478-10694497 None:intergenic 35.0%
! TTTTTAACCTCTCAGTCCAA+AGG + chr5_2:10694479-10694498 None:intergenic 35.0%
AGAAAGGGAGGATAAAAATG+AGG - chr5_2:10694509-10694528 Msa0756440:CDS 35.0%
CACACACATACAAACTGAAA+CGG - chr5_2:10694669-10694688 Msa0756440:CDS 35.0%
TGCTAACTTGGAATATGTCA+TGG - chr5_2:10694767-10694786 Msa0756440:CDS 35.0%
GGAATATGTCATGGTCTAAT+AGG - chr5_2:10694776-10694795 Msa0756440:CDS 35.0%
AAATTCGCACTTACTCTAGA+AGG + chr5_2:10694945-10694964 None:intergenic 35.0%
TTGTGTCTTTGATTGTCTTG+AGG - chr5_2:10695168-10695187 Msa0756440:intron 35.0%
GATTGTCTTGAGGATATATC+TGG - chr5_2:10695178-10695197 Msa0756440:intron 35.0%
CATTTCATTATTGGGGATCA+TGG - chr5_2:10695238-10695257 Msa0756440:intron 35.0%
TTTCATTATTGGGGATCATG+GGG - chr5_2:10695240-10695259 Msa0756440:intron 35.0%
TGTTCACACGTAAAAAACTG+TGG - chr5_2:10695430-10695449 Msa0756440:CDS 35.0%
AATTAACTGGATCACAATGC+AGG - chr5_2:10695459-10695478 Msa0756440:CDS 35.0%
ATTAACTGGATCACAATGCA+GGG - chr5_2:10695460-10695479 Msa0756440:CDS 35.0%
GTCATTCCTTATGAAGAAAG+TGG - chr5_2:10695517-10695536 Msa0756440:intron 35.0%
TTCCTTATGAAGAAAGTGGA+TGG - chr5_2:10695521-10695540 Msa0756440:intron 35.0%
TACCATCCACTTTCTTCATA+AGG + chr5_2:10695526-10695545 None:intergenic 35.0%
GTGAATCTACACCTTGAATA+TGG + chr5_2:10695666-10695685 None:intergenic 35.0%
TATTCAAGGTGTAGATTCAC+TGG - chr5_2:10695666-10695685 Msa0756440:intron 35.0%
ATTCAAGGTGTAGATTCACT+GGG - chr5_2:10695667-10695686 Msa0756440:intron 35.0%
AAAGACAAGACCATTGGTAA+AGG - chr5_2:10695745-10695764 Msa0756440:intron 35.0%
!! CTCAAATTAGCCTTTACCAA+TGG + chr5_2:10695758-10695777 None:intergenic 35.0%
GTCCAGAGAGAATAAACAAT+AGG - chr5_2:10695795-10695814 Msa0756440:intron 35.0%
AAAGAAATGAAGCATGTTGC+TGG + chr5_2:10695958-10695977 None:intergenic 35.0%
TAGGATCTGCAAAGAGAAAT+AGG + chr5_2:10696006-10696025 None:intergenic 35.0%
AAGCTGAATAATTAGGATGC+AGG - chr5_2:10696096-10696115 Msa0756440:CDS 35.0%
AGCTGAATAATTAGGATGCA+GGG - chr5_2:10696097-10696116 Msa0756440:CDS 35.0%
TGCTTCAGCAATTTAACAAC+TGG + chr5_2:10696192-10696211 None:intergenic 35.0%
ATTTATCTTTGCTACACCAG+TGG - chr5_2:10696257-10696276 Msa0756440:intron 35.0%
GAATGAAGAAAATTCTCCAC+TGG + chr5_2:10696276-10696295 None:intergenic 35.0%
! TTGTACTTTGTGTTGACCTT+GGG + chr5_2:10696339-10696358 None:intergenic 35.0%
! ATTGTACTTTGTGTTGACCT+TGG + chr5_2:10696340-10696359 None:intergenic 35.0%
CAAGATCCTACAATATCTTC+AGG - chr5_2:10696376-10696395 Msa0756440:intron 35.0%
AGTACTCCTGAAGATATTGT+AGG + chr5_2:10696385-10696404 None:intergenic 35.0%
TAATGTGTACTGTAGAAAGG+AGG - chr5_2:10696427-10696446 Msa0756440:intron 35.0%
AACCTATCTCTACAGTATAC+TGG + chr5_2:10696530-10696549 None:intergenic 35.0%
TGTTACATTTCGCAACTCTA+TGG - chr5_2:10696657-10696676 Msa0756440:CDS 35.0%
CTGTTTATCTGCCTATATAC+TGG + chr5_2:10696773-10696792 None:intergenic 35.0%
CAGTATATAGGCAGATAAAC+AGG - chr5_2:10696771-10696790 Msa0756440:CDS 35.0%
TGTCAGCTCCTAGTTTATTA+TGG - chr5_2:10696912-10696931 Msa0756440:five_prime_UTR 35.0%
GGACATTTAGGCATTTGTAA+AGG - chr5_2:10697007-10697026 Msa0756440:five_prime_UTR 35.0%
TCTTTACTTGGAGAAGGAAG+AGG + chr5_2:10694058-10694077 None:intergenic 40.0%
!! GGTTTAGTTTGTCTTGCAGT+TGG + chr5_2:10694176-10694195 None:intergenic 40.0%
ACTGCAAGACAAACTAAACC+GGG - chr5_2:10694176-10694195 Msa0756440:three_prime_UTR 40.0%
TTTGGATGATGAACGAACCA+TGG + chr5_2:10694208-10694227 None:intergenic 40.0%
GCCATAAAAGGTGAGATGAA+TGG - chr5_2:10694275-10694294 Msa0756440:three_prime_UTR 40.0%
GAGATGAATGGAGAAACAAG+TGG - chr5_2:10694287-10694306 Msa0756440:three_prime_UTR 40.0%
ATACCGGTCTTTGCTCAAAA+GGG + chr5_2:10694355-10694374 None:intergenic 40.0%
AAGAACAGAGATAGAAAGGG+AGG - chr5_2:10694497-10694516 Msa0756440:CDS 40.0%
AAGGGAGGATAAAAATGAGG+AGG - chr5_2:10694512-10694531 Msa0756440:CDS 40.0%
CTAACTGTCATGCTTTCTGA+TGG + chr5_2:10694632-10694651 None:intergenic 40.0%
TCAGTTTGTATGTGTGTGCA+GGG + chr5_2:10694667-10694686 None:intergenic 40.0%
TTCAGTTTGTATGTGTGTGC+AGG + chr5_2:10694668-10694687 None:intergenic 40.0%
! GAGTACTCATCTTTGAAGGA+TGG - chr5_2:10694804-10694823 Msa0756440:intron 40.0%
AGGATGGAATGCTGTATTCA+TGG - chr5_2:10694820-10694839 Msa0756440:intron 40.0%
GGATGGAATGCTGTATTCAT+GGG - chr5_2:10694821-10694840 Msa0756440:intron 40.0%
GATGGAATGCTGTATTCATG+GGG - chr5_2:10694822-10694841 Msa0756440:intron 40.0%
! CTGTGTTGATGTTACCTTAC+AGG - chr5_2:10695100-10695119 Msa0756440:intron 40.0%
AAATCTCAGAGGTTCCTGTA+AGG + chr5_2:10695117-10695136 None:intergenic 40.0%
GCAGCTAGTATAAATCTCAG+AGG + chr5_2:10695128-10695147 None:intergenic 40.0%
CTGAGATTTATACTAGCTGC+TGG - chr5_2:10695128-10695147 Msa0756440:intron 40.0%
TTTATACTAGCTGCTGGAAC+AGG - chr5_2:10695134-10695153 Msa0756440:intron 40.0%
GGGATGTGAACATGAAAAAG+AGG + chr5_2:10695215-10695234 None:intergenic 40.0%
GAGTGTTTGTGACTACAGAA+GGG + chr5_2:10695354-10695373 None:intergenic 40.0%
! AGAGTGTTTGTGACTACAGA+AGG + chr5_2:10695355-10695374 None:intergenic 40.0%
TCTATGTTGTTGCCAGAATG+TGG - chr5_2:10695372-10695391 Msa0756440:intron 40.0%
AGACATTAGACACCACATTC+TGG + chr5_2:10695387-10695406 None:intergenic 40.0%
TTAACTGGATCACAATGCAG+GGG - chr5_2:10695461-10695480 Msa0756440:CDS 40.0%
GAAGAAAGTGGATGGTATGA+CGG - chr5_2:10695529-10695548 Msa0756440:intron 40.0%
AGTGTTAAGAGACTAACCTC+GGG + chr5_2:10695574-10695593 None:intergenic 40.0%
GAGTGTTAAGAGACTAACCT+CGG + chr5_2:10695575-10695594 None:intergenic 40.0%
CTAGCTCGTGATAGATTGTT+GGG - chr5_2:10696023-10696042 Msa0756440:intron 40.0%
TAGATTGTTGGGCTCTTACA+AGG - chr5_2:10696034-10696053 Msa0756440:intron 40.0%
CACATATATTCCTTGTCTCC+AGG - chr5_2:10696161-10696180 Msa0756440:CDS 40.0%
TTGCTGAAGCAAACTCTAGT+TGG - chr5_2:10696201-10696220 Msa0756440:intron 40.0%
TGCTGAAGCAAACTCTAGTT+GGG - chr5_2:10696202-10696221 Msa0756440:intron 40.0%
GACCAGTATACTGTAGAGAT+AGG - chr5_2:10696525-10696544 Msa0756440:intron 40.0%
!! AGGTTTTATCGAGCATTAGC+AGG - chr5_2:10696545-10696564 Msa0756440:intron 40.0%
! TTTTATCGAGCATTAGCAGG+AGG - chr5_2:10696548-10696567 Msa0756440:intron 40.0%
GCAAGTTCCATATGCATGTT+AGG - chr5_2:10696807-10696826 Msa0756440:CDS 40.0%
CTTGTGTCCTAACATGCATA+TGG + chr5_2:10696817-10696836 None:intergenic 40.0%
ATAATCTTATCCGGCTTCCA+CGG + chr5_2:10696841-10696860 None:intergenic 40.0%
TTACTTGGAGAAGGAAGAGG+AGG + chr5_2:10694055-10694074 None:intergenic 45.0%
GGAGAAACAAGTGGATCTTC+AGG - chr5_2:10694296-10694315 Msa0756440:three_prime_UTR 45.0%
GAAACAAGTGGATCTTCAGG+AGG - chr5_2:10694299-10694318 Msa0756440:three_prime_UTR 45.0%
GGGACTTCAATTTCCAATCC+AGG + chr5_2:10694335-10694354 None:intergenic 45.0%
! AGTCCCTTTTGAGCAAAGAC+CGG - chr5_2:10694349-10694368 Msa0756440:three_prime_UTR 45.0%
CATACCGGTCTTTGCTCAAA+AGG + chr5_2:10694356-10694375 None:intergenic 45.0%
GATATTCCCTTTGGACTGAG+AGG - chr5_2:10694469-10694488 Msa0756440:CDS 45.0%
TGTCATGCTTTCTGATGGCT+TGG + chr5_2:10694627-10694646 None:intergenic 45.0%
CTGTATTCATGGGGAGAACT+GGG - chr5_2:10694831-10694850 Msa0756440:intron 45.0%
CTAAAGCTTGCAGCTGCAAT+TGG + chr5_2:10694921-10694940 None:intergenic 45.0%
!! ATGGTATGACGGACAGATGT+GGG - chr5_2:10695540-10695559 Msa0756440:intron 45.0%
!! CCTTGAATATGGTTTTGCGC+AGG + chr5_2:10695655-10695674 None:intergenic 45.0%
CCTGCGCAAAACCATATTCA+AGG - chr5_2:10695652-10695671 Msa0756440:intron 45.0%
TTCACTGGGACATAGCAAGT+AGG - chr5_2:10695681-10695700 Msa0756440:intron 45.0%
CCAACAATCTATCACGAGCT+AGG + chr5_2:10696025-10696044 None:intergenic 45.0%
CCTAGCTCGTGATAGATTGT+TGG - chr5_2:10696022-10696041 Msa0756440:intron 45.0%
! ACTGGTTTAACCTGGAGACA+AGG + chr5_2:10696174-10696193 None:intergenic 45.0%
AAGCAAACTCTAGTTGGGAC+TGG - chr5_2:10696207-10696226 Msa0756440:intron 45.0%
! ATCAACCGTTCAAGTTCCCA+AGG - chr5_2:10696320-10696339 Msa0756440:intron 45.0%
GTTGACCTTGGGAACTTGAA+CGG + chr5_2:10696328-10696347 None:intergenic 45.0%
ATTGCCTGCAGATGTGAAAG+CGG - chr5_2:10696460-10696479 Msa0756440:intron 45.0%
GAAGGAAGAGGAGGAAAAGG+AGG + chr5_2:10694046-10694065 None:intergenic 50.0%
GGAGAAGGAAGAGGAGGAAA+AGG + chr5_2:10694049-10694068 None:intergenic 50.0%
ACTAAACCGGGAAGCAACCA+TGG - chr5_2:10694188-10694207 Msa0756440:three_prime_UTR 50.0%
AACGAACCATGGTTGCTTCC+CGG + chr5_2:10694197-10694216 None:intergenic 50.0%
TGGATCTTCAGGAGGTAGCT+GGG - chr5_2:10694307-10694326 Msa0756440:three_prime_UTR 50.0%
GCTGTATTCATGGGGAGAAC+TGG - chr5_2:10694830-10694849 Msa0756440:intron 50.0%
TCGTTCTTTCTTCGCCTTGG+AGG - chr5_2:10694861-10694880 Msa0756440:intron 50.0%
TTGGCAGTGTTCACAGTGCT+TGG - chr5_2:10694891-10694910 Msa0756440:intron 50.0%
TACAGAAGGGAGTTCCCACT+AGG + chr5_2:10695341-10695360 None:intergenic 50.0%
ATGCAGGGGTGGAGTTATGT+TGG - chr5_2:10695475-10695494 Msa0756440:CDS 50.0%
!! GATGGTATGACGGACAGATG+TGG - chr5_2:10695539-10695558 Msa0756440:intron 50.0%
GTTAAGAGACTAACCTCGGG+CGG + chr5_2:10695571-10695590 None:intergenic 50.0%
!! ACTGGAGCATTGCTTGTCAC+TGG - chr5_2:10696225-10696244 Msa0756440:intron 50.0%
AGGAGGCCAGTACTGCAAAT+GGG - chr5_2:10696565-10696584 Msa0756440:intron 50.0%
GATCCTCCCATTTGCAGTAC+TGG + chr5_2:10696574-10696593 None:intergenic 50.0%
CATGTTAGGACACAAGTCCG+TGG - chr5_2:10696821-10696840 Msa0756440:CDS 50.0%
GTGGATCTTCAGGAGGTAGC+TGG - chr5_2:10694306-10694325 Msa0756440:three_prime_UTR 55.0%
AGGTAGCTGGGATCCTGGAT+TGG - chr5_2:10694319-10694338 Msa0756440:three_prime_UTR 55.0%
AGGCGAAGAAAGAACGACCC+TGG + chr5_2:10694858-10694877 None:intergenic 55.0%
GGGTCGTTCTTTCTTCGCCT+TGG - chr5_2:10694858-10694877 Msa0756440:intron 55.0%
TTCTTCGCCTTGGAGGTCTC+TGG - chr5_2:10694868-10694887 Msa0756440:intron 55.0%
ACTGGATCACAATGCAGGGG+TGG - chr5_2:10695464-10695483 Msa0756440:CDS 55.0%
GCGCAGGTGAAGTCTTCAGA+GGG + chr5_2:10695639-10695658 None:intergenic 55.0%
TGCGCAGGTGAAGTCTTCAG+AGG + chr5_2:10695640-10695659 None:intergenic 55.0%
TCGTCCGCTTTCACATCTGC+AGG + chr5_2:10696467-10696486 None:intergenic 55.0%
CAGGAGGCCAGTACTGCAAA+TGG - chr5_2:10696564-10696583 Msa0756440:intron 55.0%
AGGCCAGTACTGCAAATGGG+AGG - chr5_2:10696568-10696587 Msa0756440:intron 55.0%
TCAGGAGGTAGCTGGGATCC+TGG - chr5_2:10694314-10694333 Msa0756440:three_prime_UTR 60.0%
TCATGGGGAGAACTGGGTCC+AGG - chr5_2:10694837-10694856 Msa0756440:intron 60.0%
CATGGGGAGAACTGGGTCCA+GGG - chr5_2:10694838-10694857 Msa0756440:intron 60.0%
TCGCCTTGGAGGTCTCTGGT+TGG - chr5_2:10694872-10694891 Msa0756440:intron 60.0%
CTGCCAACCAGAGACCTCCA+AGG + chr5_2:10694878-10694897 None:intergenic 60.0%
TGGGGATCATGGGGTGAGCA+AGG - chr5_2:10695249-10695268 Msa0756440:intron 60.0%
TCTTGCAGCTGCTGCTGCTG+AGG - chr5_2:10696490-10696509 Msa0756440:intron 60.0%
GGACACAAGTCCGTGGAAGC+CGG - chr5_2:10696828-10696847 Msa0756440:CDS 60.0%
GCTGCTGCTGAGGCTGCAGA+TGG - chr5_2:10696500-10696519 Msa0756440:intron 65.0%
GATGTGGGTCAAGCCGCCCG+AGG - chr5_2:10695555-10695574 Msa0756440:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10693953 10697049 10693953 ID=Msa0756440;Name=Msa0756440
chr5_2 mRNA 10693953 10697049 10693953 ID=Msa0756440-mRNA-1;Parent=Msa0756440;Name=Msa0756440-mRNA-1;_AED=0.15;_eAED=0.15;_QI=187|1|1|1|1|1|7|445|312
chr5_2 exon 10693953 10694560 10693953 ID=Msa0756440-mRNA-1:exon:4886;Parent=Msa0756440-mRNA-1
chr5_2 exon 10694638 10694819 10694638 ID=Msa0756440-mRNA-1:exon:4885;Parent=Msa0756440-mRNA-1
chr5_2 exon 10694947 10694982 10694947 ID=Msa0756440-mRNA-1:exon:4884;Parent=Msa0756440-mRNA-1
chr5_2 exon 10695426 10695521 10695426 ID=Msa0756440-mRNA-1:exon:4883;Parent=Msa0756440-mRNA-1
chr5_2 exon 10695803 10695880 10695803 ID=Msa0756440-mRNA-1:exon:4882;Parent=Msa0756440-mRNA-1
chr5_2 exon 10696052 10696204 10696052 ID=Msa0756440-mRNA-1:exon:4881;Parent=Msa0756440-mRNA-1
chr5_2 exon 10696632 10697049 10696632 ID=Msa0756440-mRNA-1:exon:4880;Parent=Msa0756440-mRNA-1
chr5_2 five_prime_UTR 10696863 10697049 10696863 ID=Msa0756440-mRNA-1:five_prime_utr;Parent=Msa0756440-mRNA-1
chr5_2 CDS 10696632 10696862 10696632 ID=Msa0756440-mRNA-1:cds;Parent=Msa0756440-mRNA-1
chr5_2 CDS 10696052 10696204 10696052 ID=Msa0756440-mRNA-1:cds;Parent=Msa0756440-mRNA-1
chr5_2 CDS 10695803 10695880 10695803 ID=Msa0756440-mRNA-1:cds;Parent=Msa0756440-mRNA-1
chr5_2 CDS 10695426 10695521 10695426 ID=Msa0756440-mRNA-1:cds;Parent=Msa0756440-mRNA-1
chr5_2 CDS 10694947 10694982 10694947 ID=Msa0756440-mRNA-1:cds;Parent=Msa0756440-mRNA-1
chr5_2 CDS 10694638 10694819 10694638 ID=Msa0756440-mRNA-1:cds;Parent=Msa0756440-mRNA-1
chr5_2 CDS 10694398 10694560 10694398 ID=Msa0756440-mRNA-1:cds;Parent=Msa0756440-mRNA-1
chr5_2 three_prime_UTR 10693953 10694397 10693953 ID=Msa0756440-mRNA-1:three_prime_utr;Parent=Msa0756440-mRNA-1
Gene Sequence

>Msa0756440

ATGATTAGACTAAATTTTCACTGTTCTCTAATTCCAACTGCAAGACAAACTAAACCGGGAAGCAACCATGGTTCGTTCATCATCCAAAATCCAAGAGCTTCAAAATTTTCTCAACGGGTTTCCATTAAAGTTAAGGCCATAAAAGGTGAGATGAATGGAGAAACAAGTGGATCTTCAGGAGGTAGCTGGGATCCTGGATTGGAAATTGAAGTCCCTTTTGAGCAAAGACCGGTAAATGAGTACTCATCTTTGAAGGATGGAATGCTGTATTCATGGGGAGAACTGGGTCCAGGGTCGTTCTTTCTTCGCCTTGGAGGTCTCTGGTTGGCAGTGTTCACAGTGCTTGGAGCACCAATTGCAGCTGCAAGCTTTAGTCCTTCTAGAGAACCTCTGAGATTTATACTAGCTGCTGGAACAGGAACACTCTTCATTGTGTCTTTGATTGTCTTGAGGATATATCTGGGGTGGAGTTATGTTGGTGATAGACTTCTTTCTGCAGTCATTCCTTATGAAGAAAGTGGATGGTATGACGGACAGATGTGGGTCAAGCCGCCCGAGATCCTAGCTCGTGATAGATTGTTGGGCTCTTACAAGGTTAAACCAGTTGTTAAATTGCTGAAGCAAACTCTAGTTGGGACTGGAGCATTGCTTGTCACTGGAGTTATGCTATTTATCTTTGCTACACCAGTGGAGAATTTTCTTCATTCTACATTTACCACAGAAGAAAATAAATCAACCGTTCAAGTTCCCAAGGTCAACACAAAGTACAATCTAAGAAAGGAGGAGTTGCTTAAATTGCCTGCAGATGTGAAAGCGGACGACAATCTTGCAGCTGCTGCTGCTGAGGCTGCAGATGGACGACCAGTATACTGTAGAGATAGGTTTTATCGAGCATTAGCAGGAGGCCAGTACTGCAAATGGGAGGATCTGCTAAAGTAA

Protein sequence

>Msa0756440

MIRLNFHCSLIPTARQTKPGSNHGSFIIQNPRASKFSQRVSIKVKAIKGEMNGETSGSSGGSWDPGLEIEVPFEQRPVNEYSSLKDGMLYSWGELGPGSFFLRLGGLWLAVFTVLGAPIAAASFSPSREPLRFILAAGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPVENFLHSTFTTEENKSTVQVPKVNTKYNLRKEELLKLPADVKADDNLAAAAAEAADGRPVYCRDRFYRALAGGQYCKWEDLLK*