AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0456480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456480 MtrunA17_Chr3g0103441 100.000 212 0 0 12 223 1 212 1.76e-162 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456480 AT5G19855.1 54.091 220 82 3 1 219 1 202 7.66e-82 243
Msa0456480 AT5G19855.2 45.679 162 69 3 1 161 1 144 9.03e-44 144

Find 78 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTAACCTTTATGCTAAA+TGG 0.110147 3_3:+50056444 Msa0456480:CDS
TGAGATGAAGGATTTATAAT+TGG 0.183394 3_3:+50056890 Msa0456480:three_prime_UTR
TTATAAAACCACGTATATTT+AGG 0.215191 3_3:-50054497 None:intergenic
AGTAGGTATTTATTTAATAA+AGG 0.246353 3_3:-50053195 None:intergenic
TTGGACCTCAATAATTTATA+TGG 0.249901 3_3:+50053007 Msa0456480:five_prime_UTR
TAATGGACTCTGTATTTAAA+AGG 0.281463 3_3:-50056855 None:intergenic
TTGACTCTCCATTCCCTTCC+AGG 0.282181 3_3:-50053574 None:intergenic
GTAGGAGCAATATCTGTTAT+TGG 0.302873 3_3:+50053370 Msa0456480:CDS
TCTCAAACAATTCAATATAA+TGG 0.320527 3_3:-50056872 None:intergenic
CCTTGACCCATTTAGCATAA+AGG 0.329549 3_3:-50056451 None:intergenic
TTACGGGAAAATGACACATT+TGG 0.334835 3_3:-50056787 None:intergenic
GTAGGTATTTATTTAATAAA+GGG 0.348053 3_3:-50053194 None:intergenic
GAGATGAAGGATTTATAATT+GGG 0.361430 3_3:+50056891 Msa0456480:three_prime_UTR
TATTGAATTGTTTGAGATGA+AGG 0.361825 3_3:+50056878 Msa0456480:three_prime_UTR
TTTGATGGGAAAGAAGCATT+TGG 0.380847 3_3:+50053501 Msa0456480:CDS
GACAGCAGCTCAGAATTAAT+TGG 0.381941 3_3:+50056667 Msa0456480:CDS
CAATTTACATAATATATATC+TGG 0.383056 3_3:-50056818 None:intergenic
TATTAAATAAATACCTACTT+AGG 0.392472 3_3:+50053199 Msa0456480:five_prime_UTR
CGCGGCGGCGGAAGAACAAT+GGG 0.401961 3_3:+50053529 Msa0456480:CDS
AGAAGCAAAGGAGTGAAGAT+AGG 0.406816 3_3:+50053614 Msa0456480:CDS
GCTTAACCTTTATGCTAAAT+GGG 0.410431 3_3:+50056445 Msa0456480:CDS
TTGAGATTCATATTAGTTGT+TGG 0.412533 3_3:-50053445 None:intergenic
TGTTATTGGTTCATCAATGA+TGG 0.412805 3_3:+50053384 Msa0456480:CDS
ATATCTGGTAATCTTGTTAC+GGG 0.413500 3_3:-50056803 None:intergenic
GAAGGTTGAAGAAGAGAAAG+AGG 0.415633 3_3:-50053113 None:intergenic
AGTTGGAACTTGTGCTGTTA+CGG 0.423818 3_3:-50053161 None:intergenic
AGTTGGTATTGTTGATACTT+TGG 0.428335 3_3:+50053327 Msa0456480:five_prime_UTR
TATATCTGGTAATCTTGTTA+CGG 0.431294 3_3:-50056804 None:intergenic
ATTTGGAAACAATACATTGT+TGG 0.434931 3_3:-50056770 None:intergenic
GTTACCATTGTTAGTGAGCT+TGG 0.439389 3_3:+50053640 Msa0456480:CDS
GACTCATGGAGACAGTAATA+TGG 0.445142 3_3:+50056635 Msa0456480:CDS
CTCTTGAAAACGTACACAAA+TGG 0.447892 3_3:-50053289 None:intergenic
ACTAATATGAATCTCAAGAT+TGG 0.454557 3_3:+50053451 Msa0456480:CDS
TCCTTTGCTTCTTACAACTT+CGG 0.468506 3_3:-50053603 None:intergenic
AGAAAGAGGAAGTAGTTTGA+AGG 0.469067 3_3:-50053099 None:intergenic
CGGATGCAGAGTTTGTTTGA+AGG 0.480803 3_3:-50053131 None:intergenic
TTCTGAGCTGCTGTCATCTG+AGG 0.484742 3_3:-50056659 None:intergenic
AAGTAAACCAAAAGAAAAGA+AGG 0.486729 3_3:-50053066 None:intergenic
GCCGAAGTTGTAAGAAGCAA+AGG 0.490733 3_3:+50053602 Msa0456480:CDS
TCAAATATCAGATGAAAACT+TGG 0.498143 3_3:+50056597 Msa0456480:CDS
ATGAATCTCAAGATTGGTTG+TGG 0.515787 3_3:+50053457 Msa0456480:CDS
CTAGGAATCAAACAAAAGGT+TGG 0.519851 3_3:-50056722 None:intergenic
TAGACTAGGAATCAAACAAA+AGG 0.523858 3_3:-50056726 None:intergenic
AGAGTACCTTCCCAAGCAAT+CGG 0.524539 3_3:-50056047 None:intergenic
GTTAACCATATAAATTATTG+AGG 0.525850 3_3:-50053012 None:intergenic
TAAAACCACGTATATTTAGG+TGG 0.529191 3_3:-50054494 None:intergenic
GAAAGAGGAAGTAGTTTGAA+GGG 0.531419 3_3:-50053098 None:intergenic
GCGCGGCGGCGGAAGAACAA+TGG 0.533031 3_3:+50053528 Msa0456480:CDS
CATTTGGAAAAGCGCGGCGG+CGG 0.533131 3_3:+50053517 Msa0456480:CDS
GAAGTAGTTTGAAGGGTGCA+AGG 0.536994 3_3:-50053091 None:intergenic
GTTGATGAGGGAACGACTCA+TGG 0.541090 3_3:+50056621 Msa0456480:CDS
CTGAAAGAGTGATGTTGACT+CGG 0.544416 3_3:+50056423 Msa0456480:CDS
ATAAAACGTTTGCCATCTTG+TGG 0.546179 3_3:-50056024 None:intergenic
ATGAAAACTTGGAGTTGATG+AGG 0.546304 3_3:+50056608 Msa0456480:CDS
GCTCAACTATTTCACGTACA+AGG 0.554693 3_3:+50054433 Msa0456480:CDS
ACCATTGTTAGTGAGCTTGG+TGG 0.561493 3_3:+50053643 Msa0456480:CDS
CACTGGTCCATGTTTGTGTG+TGG 0.571186 3_3:+50053414 Msa0456480:CDS
TGAAAACTTGGAGTTGATGA+GGG 0.575874 3_3:+50056609 Msa0456480:CDS
CCTTTATGCTAAATGGGTCA+AGG 0.576109 3_3:+50056451 Msa0456480:CDS
TCTGAGCTGCTGTCATCTGA+GGG 0.576725 3_3:-50056658 None:intergenic
AAAACCACGTATATTTAGGT+GGG 0.578910 3_3:-50054493 None:intergenic
ACAAAAGGTTGGAAACAGAA+AGG 0.583898 3_3:-50056711 None:intergenic
TTACTGATCCTGGAAGGGAA+TGG 0.584500 3_3:+50053566 Msa0456480:CDS
GTATCAAACAAACCACAAGA+TGG 0.602633 3_3:+50056012 Msa0456480:CDS
AGTGCATCCACACACAAACA+TGG 0.606637 3_3:-50053421 None:intergenic
ATACTTTGGATTTGTGAGAG+AGG 0.615587 3_3:+50053341 Msa0456480:five_prime_UTR
TTGTGAGAGAGGAACATGGT+AGG 0.618504 3_3:+50053352 Msa0456480:exon
AGTAAACCAAAAGAAAAGAA+GGG 0.619492 3_3:-50053065 None:intergenic
TCAATGATGGACTCACACAC+TGG 0.620604 3_3:+50053397 Msa0456480:CDS
ACCACCAAGCTCACTAACAA+TGG 0.632085 3_3:-50053644 None:intergenic
ATAAAGTTTACACCTAGACT+AGG 0.637143 3_3:-50056740 None:intergenic
TGTGCTGTTACGGTCAAAGA+CGG 0.638016 3_3:-50053151 None:intergenic
GGATTTGTGAGAGAGGAACA+TGG 0.670016 3_3:+50053348 Msa0456480:exon
AAGAAGCATTTGGAAAAGCG+CGG 0.684459 3_3:+50053511 Msa0456480:CDS
ATTTCACGTACAAGGCTGTG+AGG 0.686265 3_3:+50054441 Msa0456480:CDS
AAGCATTTGGAAAAGCGCGG+CGG 0.723101 3_3:+50053514 Msa0456480:CDS
TGAACCCACCTAAATATACG+TGG 0.753733 3_3:+50054489 Msa0456480:CDS
GCGGCGGCGGAAGAACAATG+GGG 0.754151 3_3:+50053530 Msa0456480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTAAATTTTTCTGT+TGG + chr3_3:50052978-50052997 Msa0456480:five_prime_UTR 10.0%
!!! TAATATAATCTAAATTTTGT+TGG + chr3_3:50053701-50053720 Msa0456480:intron 10.0%
!!! TTTGTATTTAAAATCTTATT+AGG + chr3_3:50053871-50053890 Msa0456480:intron 10.0%
!!! CTTTTATATAAATTAGAATA+TGG + chr3_3:50054304-50054323 Msa0456480:intron 10.0%
!! TAAAAGTAGAAAAAAAAAAA+AGG - chr3_3:50055499-50055518 None:intergenic 10.0%
!! GTAGGTATTTATTTAATAAA+GGG - chr3_3:50053197-50053216 None:intergenic 15.0%
!! AGTAGGTATTTATTTAATAA+AGG - chr3_3:50053198-50053217 None:intergenic 15.0%
!! TATTAAATAAATACCTACTT+AGG + chr3_3:50053199-50053218 Msa0456480:five_prime_UTR 15.0%
!! AATAGAAAACATTATATTCA+AGG - chr3_3:50054565-50054584 None:intergenic 15.0%
!! TTTGACCAATTATTTATTTA+AGG - chr3_3:50055173-50055192 None:intergenic 15.0%
!! TTCAAATTCAAATGTATTAT+TGG - chr3_3:50056336-50056355 None:intergenic 15.0%
!! AGATTAATATTGTTAAACAA+TGG - chr3_3:50056541-50056560 None:intergenic 15.0%
!! CAATTTACATAATATATATC+TGG - chr3_3:50056821-50056840 None:intergenic 15.0%
!! GTTAACCATATAAATTATTG+AGG - chr3_3:50053015-50053034 None:intergenic 20.0%
!!! GCTTATATTTTTGTTTTGTT+AGG + chr3_3:50053223-50053242 Msa0456480:five_prime_UTR 20.0%
!! ATTACATATAAAGATAGTTG+AGG - chr3_3:50054073-50054092 None:intergenic 20.0%
!! AATTCTATAGTTCATAGTTA+CGG + chr3_3:50054211-50054230 Msa0456480:intron 20.0%
!! TTATAAAACCACGTATATTT+AGG - chr3_3:50054500-50054519 None:intergenic 20.0%
!! TCCTTCCTTAAATAAATAAT+TGG + chr3_3:50055165-50055184 Msa0456480:intron 20.0%
!! ACCAATTATTTATTTAAGGA+AGG - chr3_3:50055169-50055188 None:intergenic 20.0%
!! GATAGATGAAAGAATTATTT+AGG - chr3_3:50055391-50055410 None:intergenic 20.0%
!!! AACATCAACTTTTTTCTTAA+AGG - chr3_3:50055872-50055891 None:intergenic 20.0%
!! AAGTAATTACCATACTATAT+GGG - chr3_3:50055948-50055967 None:intergenic 20.0%
!! TAAGTAATTACCATACTATA+TGG - chr3_3:50055949-50055968 None:intergenic 20.0%
!!! ATTTATGTTTTGTTCTATGT+TGG + chr3_3:50055979-50055998 Msa0456480:intron 20.0%
!! GATGAAATGAATAATAACTA+GGG - chr3_3:50056083-50056102 None:intergenic 20.0%
!! AGATGAAATGAATAATAACT+AGG - chr3_3:50056084-50056103 None:intergenic 20.0%
!! AAGTGAATATGAATTATTCA+TGG - chr3_3:50056382-50056401 None:intergenic 20.0%
!!! CAAATTATTTTACATGTCTT+TGG - chr3_3:50056506-50056525 None:intergenic 20.0%
!!! ACATGTAAAATAATTTGTGA+AGG + chr3_3:50056509-50056528 Msa0456480:intron 20.0%
!! TCTCAAACAATTCAATATAA+TGG - chr3_3:50056875-50056894 None:intergenic 20.0%
!! ATTTTTCTGTTGGACAATTT+TGG + chr3_3:50052988-50053007 Msa0456480:five_prime_UTR 25.0%
! TTGGACCTCAATAATTTATA+TGG + chr3_3:50053007-50053026 Msa0456480:five_prime_UTR 25.0%
! AGTAAACCAAAAGAAAAGAA+GGG - chr3_3:50053068-50053087 None:intergenic 25.0%
! AAGTAAACCAAAAGAAAAGA+AGG - chr3_3:50053069-50053088 None:intergenic 25.0%
! AAAAATATAAGCACCTAAGT+AGG - chr3_3:50053215-50053234 None:intergenic 25.0%
! TTGAGATTCATATTAGTTGT+TGG - chr3_3:50053448-50053467 None:intergenic 25.0%
! ACTAATATGAATCTCAAGAT+TGG + chr3_3:50053451-50053470 Msa0456480:CDS 25.0%
! TGTTACAAACATTGAATCAA+AGG - chr3_3:50053753-50053772 None:intergenic 25.0%
!!! AACATATTTTGAGTCAAGAT+TGG + chr3_3:50053831-50053850 Msa0456480:intron 25.0%
! ATAGTTATAGCATCAATATC+AGG - chr3_3:50053914-50053933 None:intergenic 25.0%
! AAATCTATTAATCACTGACA+CGG + chr3_3:50053954-50053973 Msa0456480:intron 25.0%
!! CAGTACATTCATATTTCTAA+TGG - chr3_3:50054147-50054166 None:intergenic 25.0%
! AATGATCATTATTGAACAGA+AGG - chr3_3:50054178-50054197 None:intergenic 25.0%
! GTAAGTGAATTCTTTATTCT+AGG + chr3_3:50054520-50054539 Msa0456480:intron 25.0%
! ATACATGATGACTCTAATAT+AGG + chr3_3:50054612-50054631 Msa0456480:intron 25.0%
!!! AGTTTTCATTGATTTGAAGA+AGG - chr3_3:50054701-50054720 None:intergenic 25.0%
!! GAGCTCATAATTTTGTTAAA+AGG + chr3_3:50054958-50054977 Msa0456480:intron 25.0%
! AAACAACATTGGAAAAATCT+TGG - chr3_3:50055011-50055030 None:intergenic 25.0%
!!! AGGGAAAAAAAGTGTTAAAA+AGG - chr3_3:50055060-50055079 None:intergenic 25.0%
! CTCTAATATCTAGCATATTA+GGG + chr3_3:50055125-50055144 Msa0456480:intron 25.0%
! GGAAAAAACGAAAAACTTAA+AGG - chr3_3:50055209-50055228 None:intergenic 25.0%
!!! GTTTTTCGTTTTTTCCAAAA+TGG + chr3_3:50055213-50055232 Msa0456480:intron 25.0%
!!! TTGTGACTTTTGAAACTTAA+AGG - chr3_3:50055240-50055259 None:intergenic 25.0%
!!! AAACAAGTCCTTTTAGTTAA+AGG + chr3_3:50055258-50055277 Msa0456480:intron 25.0%
! AAACAAGTCCTTTAACTAAA+AGG - chr3_3:50055269-50055288 None:intergenic 25.0%
!!! TTTTAGTTAAAGGACTTGTT+TGG + chr3_3:50055268-50055287 Msa0456480:intron 25.0%
!! TTTAGTTAAAGGACTTGTTT+GGG + chr3_3:50055269-50055288 Msa0456480:intron 25.0%
! ATTATGTGTTGAACAAAAAG+AGG + chr3_3:50055528-50055547 Msa0456480:intron 25.0%
! TTATGTGTTGAACAAAAAGA+GGG + chr3_3:50055529-50055548 Msa0456480:intron 25.0%
! AATTGCAAATGTTAGTATGT+TGG - chr3_3:50055634-50055653 None:intergenic 25.0%
!! GTTTGATTTAAAAGTAGACA+TGG - chr3_3:50055736-50055755 None:intergenic 25.0%
!! TTTTACAATCCCATATAGTA+TGG + chr3_3:50055936-50055955 Msa0456480:intron 25.0%
!!! TGAGTATAGCTATATTTTAG+TGG - chr3_3:50056122-50056141 None:intergenic 25.0%
!! AGTTAATCAGATGCAAATTT+TGG - chr3_3:50056215-50056234 None:intergenic 25.0%
! ATAATTCATATTCACTTGAC+AGG + chr3_3:50056385-50056404 Msa0456480:intron 25.0%
! TCAAATATCAGATGAAAACT+TGG + chr3_3:50056597-50056616 Msa0456480:CDS 25.0%
! ATTTGGAAACAATACATTGT+TGG - chr3_3:50056773-50056792 None:intergenic 25.0%
! TATATCTGGTAATCTTGTTA+CGG - chr3_3:50056807-50056826 None:intergenic 25.0%
!!! TAATGGACTCTGTATTTAAA+AGG - chr3_3:50056858-50056877 None:intergenic 25.0%
!! TATTGAATTGTTTGAGATGA+AGG + chr3_3:50056878-50056897 Msa0456480:three_prime_UTR 25.0%
! TGAGATGAAGGATTTATAAT+TGG + chr3_3:50056890-50056909 Msa0456480:three_prime_UTR 25.0%
! GAGATGAAGGATTTATAATT+GGG + chr3_3:50056891-50056910 Msa0456480:three_prime_UTR 25.0%
!!! AGGGTGTGAGATTTTTTTAA+GGG - chr3_3:50053049-50053068 None:intergenic 30.0%
!!! AAGGGTGTGAGATTTTTTTA+AGG - chr3_3:50053050-50053069 None:intergenic 30.0%
! TAAAGGGTATGCAAAAAAGT+TGG - chr3_3:50053181-50053200 None:intergenic 30.0%
! AGTTGTGATTTTCTTGTAGT+TGG + chr3_3:50053310-50053329 Msa0456480:five_prime_UTR 30.0%
! AGTTGGTATTGTTGATACTT+TGG + chr3_3:50053327-50053346 Msa0456480:five_prime_UTR 30.0%
!! TGTTATTGGTTCATCAATGA+TGG + chr3_3:50053384-50053403 Msa0456480:CDS 30.0%
! TGTTTTGTGGAAGAATTTGA+TGG + chr3_3:50053486-50053505 Msa0456480:CDS 30.0%
! GTTTTGTGGAAGAATTTGAT+GGG + chr3_3:50053487-50053506 Msa0456480:CDS 30.0%
! TCAATATGAAGACACTTTTG+AGG + chr3_3:50053666-50053685 Msa0456480:CDS 30.0%
!! CACTTTTGAGGATGTTAAAA+CGG + chr3_3:50053678-50053697 Msa0456480:CDS 30.0%
GATAGTTGAGGAAATACAAA+AGG - chr3_3:50054061-50054080 None:intergenic 30.0%
! GATGAGTTGTTAATTTGAGA+TGG - chr3_3:50054239-50054258 None:intergenic 30.0%
TAGCAACAAAATTGTGATAG+TGG - chr3_3:50054347-50054366 None:intergenic 30.0%
AAAACCACGTATATTTAGGT+GGG - chr3_3:50054496-50054515 None:intergenic 30.0%
TAAAACCACGTATATTTAGG+TGG - chr3_3:50054497-50054516 None:intergenic 30.0%
! ATGTTTTCTATTTAGACGCA+TGG + chr3_3:50054573-50054592 Msa0456480:intron 30.0%
!! AATTTGCTTTTATGTCTGAG+AGG - chr3_3:50054797-50054816 None:intergenic 30.0%
! CAAAATTGCTCAATTTTGTC+CGG - chr3_3:50054869-50054888 None:intergenic 30.0%
!! TTCTAGAATCAGAAGAAAGA+AGG + chr3_3:50055084-50055103 Msa0456480:intron 30.0%
CCTAATATGCTAGATATTAG+AGG - chr3_3:50055127-50055146 None:intergenic 30.0%
CCTCTAATATCTAGCATATT+AGG + chr3_3:50055124-50055143 Msa0456480:intron 30.0%
AATTGGTCAAATGCATCTAA+AGG + chr3_3:50055182-50055201 Msa0456480:intron 30.0%
! TGAAACTTAAAGGACCATTT+TGG - chr3_3:50055230-50055249 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + chr3_3:50055287-50055306 Msa0456480:intron 30.0%
! TGAAACTTAAAGGACTTGTT+TGG + chr3_3:50055297-50055316 Msa0456480:intron 30.0%
! GAAACTTAAAGGACTTGTTT+GGG + chr3_3:50055298-50055317 Msa0456480:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + chr3_3:50055287-50055306 Msa0456480:intron 30.0%
TGAAACTTAAAGGATCACTT+TGG + chr3_3:50055326-50055345 Msa0456480:intron 30.0%
GAAACTTAAAGGATCACTTT+GGG + chr3_3:50055327-50055346 Msa0456480:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + chr3_3:50055347-50055366 Msa0456480:intron 30.0%
TTTAGGTCAAATGCATCTAA+AGG - chr3_3:50055374-50055393 None:intergenic 30.0%
TATGTGTTGAACAAAAAGAG+GGG + chr3_3:50055530-50055549 Msa0456480:intron 30.0%
TCAAAAGAAGTTAAAGGTCT+AGG + chr3_3:50055584-50055603 Msa0456480:intron 30.0%
CAAAAGAAGTTAAAGGTCTA+GGG + chr3_3:50055585-50055604 Msa0456480:intron 30.0%
CAAAAAGAAAATGAACACGA+CGG - chr3_3:50055707-50055726 None:intergenic 30.0%
!!! AGTACTTCATTTTTTGATCC+TGG + chr3_3:50055805-50055824 Msa0456480:intron 30.0%
ATTTGTCCTTTAATCAGCTT+AGG + chr3_3:50055841-50055860 Msa0456480:intron 30.0%
! ATGCAAATTTTGGATACTGA+GGG - chr3_3:50056205-50056224 None:intergenic 30.0%
GCTTAACCTTTATGCTAAAT+GGG + chr3_3:50056445-50056464 Msa0456480:CDS 30.0%
TAGACTAGGAATCAAACAAA+AGG - chr3_3:50056729-50056748 None:intergenic 30.0%
!! TTTTGTTTGATTCCTAGTCT+AGG + chr3_3:50056728-50056747 Msa0456480:three_prime_UTR 30.0%
ATAAAGTTTACACCTAGACT+AGG - chr3_3:50056743-50056762 None:intergenic 30.0%
ATATCTGGTAATCTTGTTAC+GGG - chr3_3:50056806-50056825 None:intergenic 30.0%
!!! GATTTTTTTAAGGGTGTGTG+TGG - chr3_3:50053040-50053059 None:intergenic 35.0%
GAAAGAGGAAGTAGTTTGAA+GGG - chr3_3:50053101-50053120 None:intergenic 35.0%
AGAAAGAGGAAGTAGTTTGA+AGG - chr3_3:50053102-50053121 None:intergenic 35.0%
ACGTACACAAATGGAAAAAG+TGG - chr3_3:50053283-50053302 None:intergenic 35.0%
CTCTTGAAAACGTACACAAA+TGG - chr3_3:50053292-50053311 None:intergenic 35.0%
ATACTTTGGATTTGTGAGAG+AGG + chr3_3:50053341-50053360 Msa0456480:five_prime_UTR 35.0%
GTAGGAGCAATATCTGTTAT+TGG + chr3_3:50053370-50053389 Msa0456480:CDS 35.0%
! ATGAATCTCAAGATTGGTTG+TGG + chr3_3:50053457-50053476 Msa0456480:CDS 35.0%
!! TTTGATGGGAAAGAAGCATT+TGG + chr3_3:50053501-50053520 Msa0456480:CDS 35.0%
! AGTAGTTCTTTTACTGATCC+TGG + chr3_3:50053556-50053575 Msa0456480:CDS 35.0%
! TTCTTTTACTGATCCTGGAA+GGG + chr3_3:50053561-50053580 Msa0456480:CDS 35.0%
TCCTTTGCTTCTTACAACTT+CGG - chr3_3:50053606-50053625 None:intergenic 35.0%
CACCTTATATGACACTGATA+CGG + chr3_3:50053984-50054003 Msa0456480:intron 35.0%
ATCCGTATCAGTGTCATATA+AGG - chr3_3:50053989-50054008 None:intergenic 35.0%
GAGTGTCTAGAAAAGTTTCA+TGG - chr3_3:50054669-50054688 None:intergenic 35.0%
GAGACTAAGTAAAGAGACTT+AGG - chr3_3:50054832-50054851 None:intergenic 35.0%
ATGAGCTCAAAGCAAATGTT+GGG - chr3_3:50054946-50054965 None:intergenic 35.0%
TATGAGCTCAAAGCAAATGT+TGG - chr3_3:50054947-50054966 None:intergenic 35.0%
AAATCTTGGAGTAGAGACAT+TGG - chr3_3:50054997-50055016 None:intergenic 35.0%
TGATCAATGACAATGCAGTT+GGG - chr3_3:50055036-50055055 None:intergenic 35.0%
ATGATCAATGACAATGCAGT+TGG - chr3_3:50055037-50055056 None:intergenic 35.0%
!! CTTCTGATTCTAGAACACAA+GGG - chr3_3:50055079-50055098 None:intergenic 35.0%
!! TCTTCTGATTCTAGAACACA+AGG - chr3_3:50055080-50055099 None:intergenic 35.0%
! TGATGAAGAAGGTAGAGTTT+TGG - chr3_3:50055434-50055453 None:intergenic 35.0%
AAGTGTATGAGTGATGAAGA+AGG - chr3_3:50055445-50055464 None:intergenic 35.0%
TGATCCAAAACCTAGACAAA+CGG + chr3_3:50055469-50055488 Msa0456480:intron 35.0%
TTGAACAAAAAGAGGGGAAT+GGG + chr3_3:50055536-50055555 Msa0456480:intron 35.0%
AAGGGGTCAAAAGAAGTTAA+AGG + chr3_3:50055578-50055597 Msa0456480:intron 35.0%
! TAAAGGTCTAGGGTTCAAAT+CGG + chr3_3:50055595-50055614 Msa0456480:intron 35.0%
GTGTAACCTAAGCTGATTAA+AGG - chr3_3:50055850-50055869 None:intergenic 35.0%
GTATCAAACAAACCACAAGA+TGG + chr3_3:50056012-50056031 Msa0456480:CDS 35.0%
ATAAAACGTTTGCCATCTTG+TGG - chr3_3:50056027-50056046 None:intergenic 35.0%
! AAACGTTTTATCCGATTGCT+TGG + chr3_3:50056036-50056055 Msa0456480:CDS 35.0%
! AACGTTTTATCCGATTGCTT+GGG + chr3_3:50056037-50056056 Msa0456480:CDS 35.0%
GGATACTGAGGGTAAAAAAA+TGG - chr3_3:50056194-50056213 None:intergenic 35.0%
! GATGCAAATTTTGGATACTG+AGG - chr3_3:50056206-50056225 None:intergenic 35.0%
TGCATCTGATTAACTCAAGT+CGG + chr3_3:50056220-50056239 Msa0456480:intron 35.0%
GTCTTGCGAATGGAAAAATT+AGG - chr3_3:50056286-50056305 None:intergenic 35.0%
GGCTTAACCTTTATGCTAAA+TGG + chr3_3:50056444-50056463 Msa0456480:CDS 35.0%
!! ATGAAAACTTGGAGTTGATG+AGG + chr3_3:50056608-50056627 Msa0456480:CDS 35.0%
!! TGAAAACTTGGAGTTGATGA+GGG + chr3_3:50056609-50056628 Msa0456480:CDS 35.0%
ACAAAAGGTTGGAAACAGAA+AGG - chr3_3:50056714-50056733 None:intergenic 35.0%
CTAGGAATCAAACAAAAGGT+TGG - chr3_3:50056725-50056744 None:intergenic 35.0%
TTACGGGAAAATGACACATT+TGG - chr3_3:50056790-50056809 None:intergenic 35.0%
! CTCACACCCTTCTTTTCTTT+TGG + chr3_3:50053059-50053078 Msa0456480:five_prime_UTR 40.0%
GAAGGTTGAAGAAGAGAAAG+AGG - chr3_3:50053116-50053135 None:intergenic 40.0%
! AGTTGGAACTTGTGCTGTTA+CGG - chr3_3:50053164-50053183 None:intergenic 40.0%
!!! GTTGTGGAGATGTTGTTTTG+TGG + chr3_3:50053473-50053492 Msa0456480:CDS 40.0%
!! AAGAAGCATTTGGAAAAGCG+CGG + chr3_3:50053511-50053530 Msa0456480:CDS 40.0%
! GTTCTTTTACTGATCCTGGA+AGG + chr3_3:50053560-50053579 Msa0456480:CDS 40.0%
AGAAGCAAAGGAGTGAAGAT+AGG + chr3_3:50053614-50053633 Msa0456480:CDS 40.0%
GTTACCATTGTTAGTGAGCT+TGG + chr3_3:50053640-50053659 Msa0456480:CDS 40.0%
GCTCAACTATTTCACGTACA+AGG + chr3_3:50054433-50054452 Msa0456480:CDS 40.0%
TGAACCCACCTAAATATACG+TGG + chr3_3:50054489-50054508 Msa0456480:CDS 40.0%
TCCTAATCCCTTTCGTCTTA+AGG + chr3_3:50054638-50054657 Msa0456480:intron 40.0%
CCTAATCCCTTTCGTCTTAA+GGG + chr3_3:50054639-50054658 Msa0456480:intron 40.0%
GGAAAACCCTTAAGACGAAA+GGG - chr3_3:50054648-50054667 None:intergenic 40.0%
TGGAAAACCCTTAAGACGAA+AGG - chr3_3:50054649-50054668 None:intergenic 40.0%
CCTGCTCTATAAGAACAAGA+AGG - chr3_3:50054899-50054918 None:intergenic 40.0%
CCTTCTTGTTCTTATAGAGC+AGG + chr3_3:50054896-50054915 Msa0456480:intron 40.0%
!! ATTGCCGTTTGTCTAGGTTT+TGG - chr3_3:50055476-50055495 None:intergenic 40.0%
! AAAAGGATTGCCGTTTGTCT+AGG - chr3_3:50055482-50055501 None:intergenic 40.0%
GTTGAACAAAAAGAGGGGAA+TGG + chr3_3:50055535-50055554 Msa0456480:intron 40.0%
TAGCTTACTTGGTTGAGCTA+AGG + chr3_3:50055559-50055578 Msa0456480:intron 40.0%
AGCTTACTTGGTTGAGCTAA+GGG + chr3_3:50055560-50055579 Msa0456480:intron 40.0%
CAAATCGACTGAGATATACC+AGG - chr3_3:50055826-50055845 None:intergenic 40.0%
! TTTTATCCGATTGCTTGGGA+AGG + chr3_3:50056041-50056060 Msa0456480:CDS 40.0%
! CTGAAAGAGTGATGTTGACT+CGG + chr3_3:50056423-50056442 Msa0456480:CDS 40.0%
CCTTGACCCATTTAGCATAA+AGG - chr3_3:50056454-50056473 None:intergenic 40.0%
CCTTTATGCTAAATGGGTCA+AGG + chr3_3:50056451-50056470 Msa0456480:CDS 40.0%
TGCTAAATGGGTCAAGGTAA+TGG + chr3_3:50056457-50056476 Msa0456480:intron 40.0%
GACTCATGGAGACAGTAATA+TGG + chr3_3:50056635-50056654 Msa0456480:CDS 40.0%
GACAGCAGCTCAGAATTAAT+TGG + chr3_3:50056667-50056686 Msa0456480:CDS 40.0%
! GAAGTAGTTTGAAGGGTGCA+AGG - chr3_3:50053094-50053113 None:intergenic 45.0%
! CGGATGCAGAGTTTGTTTGA+AGG - chr3_3:50053134-50053153 None:intergenic 45.0%
! TGTGCTGTTACGGTCAAAGA+CGG - chr3_3:50053154-50053173 None:intergenic 45.0%
GGATTTGTGAGAGAGGAACA+TGG + chr3_3:50053348-50053367 Msa0456480:exon 45.0%
TTGTGAGAGAGGAACATGGT+AGG + chr3_3:50053352-50053371 Msa0456480:exon 45.0%
!! TCAATGATGGACTCACACAC+TGG + chr3_3:50053397-50053416 Msa0456480:CDS 45.0%
AGTGCATCCACACACAAACA+TGG - chr3_3:50053424-50053443 None:intergenic 45.0%
TTACTGATCCTGGAAGGGAA+TGG + chr3_3:50053566-50053585 Msa0456480:CDS 45.0%
GCCGAAGTTGTAAGAAGCAA+AGG + chr3_3:50053602-50053621 Msa0456480:CDS 45.0%
ACCATTGTTAGTGAGCTTGG+TGG + chr3_3:50053643-50053662 Msa0456480:CDS 45.0%
ACCACCAAGCTCACTAACAA+TGG - chr3_3:50053647-50053666 None:intergenic 45.0%
ATTTCACGTACAAGGCTGTG+AGG + chr3_3:50054441-50054460 Msa0456480:CDS 45.0%
! GACGCATGGTAAGTGTGTTT+TGG + chr3_3:50054587-50054606 Msa0456480:intron 45.0%
CCCTTAAGACGAAAGGGATT+AGG - chr3_3:50054642-50054661 None:intergenic 45.0%
TGCGATCGAGCGATATCAAA+TGG - chr3_3:50054742-50054761 None:intergenic 45.0%
TTGTCCGGCAAGTGTTTGAA+CGG - chr3_3:50054854-50054873 None:intergenic 45.0%
GCAGTTGGGTCAAACAACAT+TGG - chr3_3:50055022-50055041 None:intergenic 45.0%
GCTTACTTGGTTGAGCTAAG+GGG + chr3_3:50055561-50055580 Msa0456480:intron 45.0%
! AGAGTACCTTCCCAAGCAAT+CGG - chr3_3:50056050-50056069 None:intergenic 45.0%
TCAGAATCGAGTCTTGCGAA+TGG - chr3_3:50056296-50056315 None:intergenic 45.0%
CACTGGTCCATGTTTGTGTG+TGG + chr3_3:50053414-50053433 Msa0456480:CDS 50.0%
! AAGCATTTGGAAAAGCGCGG+CGG + chr3_3:50053514-50053533 Msa0456480:CDS 50.0%
TTGACTCTCCATTCCCTTCC+AGG - chr3_3:50053577-50053596 None:intergenic 50.0%
GTCTCCGTTCAAACACTTGC+CGG + chr3_3:50054847-50054866 Msa0456480:intron 50.0%
AGGGGAATGGGTAGCTTACT+TGG + chr3_3:50055548-50055567 Msa0456480:intron 50.0%
! GTTGATGAGGGAACGACTCA+TGG + chr3_3:50056621-50056640 Msa0456480:CDS 50.0%
TCTGAGCTGCTGTCATCTGA+GGG - chr3_3:50056661-50056680 None:intergenic 50.0%
TTCTGAGCTGCTGTCATCTG+AGG - chr3_3:50056662-50056681 None:intergenic 50.0%
! CATTTGGAAAAGCGCGGCGG+CGG + chr3_3:50053517-50053536 Msa0456480:CDS 60.0%
CGCGGCGGCGGAAGAACAAT+GGG + chr3_3:50053529-50053548 Msa0456480:CDS 65.0%
GCGGCGGCGGAAGAACAATG+GGG + chr3_3:50053530-50053549 Msa0456480:CDS 65.0%
GCGCGGCGGCGGAAGAACAA+TGG + chr3_3:50053528-50053547 Msa0456480:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 50052964 50056948 50052964 ID=Msa0456480;Name=Msa0456480
chr3_3 mRNA 50052964 50056948 50052964 ID=Msa0456480-mRNA-1;Parent=Msa0456480;Name=Msa0456480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=403|1|1|1|1|1|5|255|223
chr3_3 exon 50052964 50053699 50052964 ID=Msa0456480-mRNA-1:exon:9571;Parent=Msa0456480-mRNA-1
chr3_3 exon 50054428 50054519 50054428 ID=Msa0456480-mRNA-1:exon:9572;Parent=Msa0456480-mRNA-1
chr3_3 exon 50056005 50056062 50056005 ID=Msa0456480-mRNA-1:exon:9573;Parent=Msa0456480-mRNA-1
chr3_3 exon 50056407 50056472 50056407 ID=Msa0456480-mRNA-1:exon:9574;Parent=Msa0456480-mRNA-1
chr3_3 exon 50056571 50056948 50056571 ID=Msa0456480-mRNA-1:exon:9575;Parent=Msa0456480-mRNA-1
chr3_3 five_prime_UTR 50052964 50053366 50052964 ID=Msa0456480-mRNA-1:five_prime_utr;Parent=Msa0456480-mRNA-1
chr3_3 CDS 50053367 50053699 50053367 ID=Msa0456480-mRNA-1:cds;Parent=Msa0456480-mRNA-1
chr3_3 CDS 50054428 50054519 50054428 ID=Msa0456480-mRNA-1:cds;Parent=Msa0456480-mRNA-1
chr3_3 CDS 50056005 50056062 50056005 ID=Msa0456480-mRNA-1:cds;Parent=Msa0456480-mRNA-1
chr3_3 CDS 50056407 50056472 50056407 ID=Msa0456480-mRNA-1:cds;Parent=Msa0456480-mRNA-1
chr3_3 CDS 50056571 50056693 50056571 ID=Msa0456480-mRNA-1:cds;Parent=Msa0456480-mRNA-1
chr3_3 three_prime_UTR 50056694 50056948 50056694 ID=Msa0456480-mRNA-1:three_prime_utr;Parent=Msa0456480-mRNA-1
Gene Sequence

>Msa0456480

ATGGTAGGAGCAATATCTGTTATTGGTTCATCAATGATGGACTCACACACTGGTCCATGTTTGTGTGTGGATGCACTTCCAACAACTAATATGAATCTCAAGATTGGTTGTGGAGATGTTGTTTTGTGGAAGAATTTGATGGGAAAGAAGCATTTGGAAAAGCGCGGCGGCGGAAGAACAATGGGGTTGAGTAGTTCTTTTACTGATCCTGGAAGGGAATGGAGAGTCAAGTTTAGCCGAAGTTGTAAGAAGCAAAGGAGTGAAGATAGGAGAGTTACCATTGTTAGTGAGCTTGGTGGTCAATATGAAGACACTTTTGAGGATGTTAAAACGCAAATGCTCAACTATTTCACGTACAAGGCTGTGAGGACTGTTATGCAGCAGCTGTATGAGATGAACCCACCTAAATATACGTGGTTTTATAATTTTGTTGTATCAAACAAACCACAAGATGGCAAACGTTTTATCCGATTGCTTGGGAAGGAACAACAAGAGCTTGCTGAAAGAGTGATGTTGACTCGGCTTAACCTTTATGCTAAATGGGTCAAGAAATGTAATCATGCTGAGATATATAATCAAATATCAGATGAAAACTTGGAGTTGATGAGGGAACGACTCATGGAGACAGTAATATGGCCCTCAGATGACAGCAGCTCAGAATTAATTGGCTGA

Protein sequence

>Msa0456480

MVGAISVIGSSMMDSHTGPCLCVDALPTTNMNLKIGCGDVVLWKNLMGKKHLEKRGGGRTMGLSSSFTDPGREWRVKFSRSCKKQRSEDRRVTIVSELGGQYEDTFEDVKTQMLNYFTYKAVRTVMQQLYEMNPPKYTWFYNFVVSNKPQDGKRFIRLLGKEQQELAERVMLTRLNLYAKWVKKCNHAEIYNQISDENLELMRERLMETVIWPSDDSSSELIG*