AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0314980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314980 MtrunA17_Chr2g0285791 96.154 130 5 0 1 130 196 325 2.84e-87 256
Msa0314980 MtrunA17_Chr6g0453121 56.911 123 51 1 1 123 230 350 1.38e-38 135
Msa0314980 MtrunA17_Chr6g0450671 53.226 124 55 2 1 123 202 323 5.90e-34 122
Msa0314980 MtrunA17_Chr7g0272621 39.806 103 56 2 13 114 218 315 9.52e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314980 AT4G18370.1 75.385 130 32 0 1 130 194 323 6.40e-68 207
Msa0314980 AT5G39830.1 56.557 122 51 1 1 122 220 339 2.38e-39 137
Msa0314980 AT3G27925.1 53.226 124 55 2 1 123 209 330 1.26e-33 122
Msa0314980 AT3G27925.2 53.226 124 55 2 1 123 209 330 1.26e-33 122
Msa0314980 AT5G39830.2 49.180 122 46 1 1 122 220 325 1.04e-31 116
Msa0314980 AT4G18370.2 73.239 71 19 0 1 71 194 264 4.89e-31 111
Msa0314980 AT5G27660.2 41.584 101 53 2 13 112 220 315 8.25e-16 72.8
Msa0314980 AT5G27660.1 41.584 101 53 2 13 112 215 310 9.67e-16 72.4
Msa0314980 AT4G18370.3 69.048 42 13 0 1 42 194 235 1.50e-14 68.2

Find 45 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATAAAGCCTGTTGTTAT+TGG 0.182109 2_4:-11147312 Msa0314980:CDS
CTTTGATAGCCCCTCCATTT+GGG 0.261671 2_4:+11146921 None:intergenic
TTTCAAAACCTATTAGTATA+AGG 0.279957 2_4:+11145582 None:intergenic
CCTTTGATAGCCCCTCCATT+TGG 0.294286 2_4:+11146920 None:intergenic
ATGCAGGTGGTCAGTGGTTT+AGG 0.298156 2_4:-11146959 Msa0314980:intron
GTACCATCCCTTATTGTATA+TGG 0.304932 2_4:-11145609 Msa0314980:CDS
TTTGCCATTGGGAATCCTTA+TGG 0.306916 2_4:-11147255 Msa0314980:CDS
ATGGAACACCTTATACTAAT+AGG 0.308611 2_4:-11145590 Msa0314980:CDS
GACAGAGTTGCTTTGCCATT+GGG 0.398813 2_4:-11147266 Msa0314980:CDS
GACTCTCATGGCCATGTTGT+TGG 0.403469 2_4:-11145958 Msa0314980:CDS
TATTTGCAGGTTGATGTTGA+TGG 0.405637 2_4:-11147339 None:intergenic
AAGGTGTTCCATATACAATA+AGG 0.408680 2_4:+11145601 None:intergenic
CGGATGTTAACAGGAAATTC+AGG 0.411871 2_4:-11145994 Msa0314980:intron
TATGAGAATACTCTCACAAC+AGG 0.425005 2_4:-11147231 Msa0314980:CDS
TTAGATTCACCAATAACAAC+AGG 0.438438 2_4:+11147303 None:intergenic
TCAGGTACCGGAGCTTCATC+AGG 0.470733 2_4:-11145672 Msa0314980:intron
AGGTGTTCCATATACAATAA+GGG 0.471453 2_4:+11145602 None:intergenic
ATTACCTTTCCTTGTGAAGG+TGG 0.475479 2_4:+11145924 None:intergenic
CGCGAGATACCTTCCCCAAA+TGG 0.481655 2_4:-11146935 Msa0314980:CDS
TATATTACCTTTCCTTGTGA+AGG 0.491019 2_4:+11145921 None:intergenic
GGACAGAGTTGCTTTGCCAT+TGG 0.512294 2_4:-11147267 Msa0314980:CDS
AGAGTATTCTCATATCCATA+AGG 0.524491 2_4:+11147240 None:intergenic
GTTAACTCCTGATGAAGCTC+CGG 0.541628 2_4:+11145665 None:intergenic
ACTGATGCAGCTATTAATGC+AGG 0.543845 2_4:-11146887 Msa0314980:intron
ACTTCTAATTACAGAGTCGA+TGG 0.545161 2_4:+11145632 None:intergenic
GGACCATTGATTGACTCTCA+TGG 0.566441 2_4:-11145970 Msa0314980:CDS
TTTGATAGCCCCTCCATTTG+GGG 0.566803 2_4:+11146922 None:intergenic
TGGCCATGAGAGTCAATCAA+TGG 0.568108 2_4:+11145967 None:intergenic
CCAAATGGAGGGGCTATCAA+AGG 0.574726 2_4:-11146920 Msa0314980:CDS
AGATACCTTCCCCAAATGGA+GGG 0.575115 2_4:-11146931 Msa0314980:CDS
ATAGCCCCTCCATTTGGGGA+AGG 0.577157 2_4:+11146926 None:intergenic
GAATCTAAGAATTTACATGT+TGG 0.582777 2_4:-11147288 Msa0314980:CDS
GAGATACCTTCCCCAAATGG+AGG 0.591441 2_4:-11146932 Msa0314980:CDS
TAAATTATGCAGGTGGTCAG+TGG 0.593859 2_4:-11146965 Msa0314980:intron
ACAGCCACCTTCACAAGGAA+AGG 0.596510 2_4:-11145928 Msa0314980:intron
CTGTGTTTACTCCAACAACA+TGG 0.626621 2_4:+11145947 None:intergenic
CTTCTAATTACAGAGTCGAT+GGG 0.626746 2_4:+11145633 None:intergenic
GTTCCATATACAATAAGGGA+TGG 0.636651 2_4:+11145606 None:intergenic
TAAACACAGCCACCTTCACA+AGG 0.639628 2_4:-11145933 Msa0314980:CDS
ATGAGAATACTCTCACAACA+GGG 0.643517 2_4:-11147230 Msa0314980:CDS
GATACCTTCCCCAAATGGAG+GGG 0.644193 2_4:-11146930 Msa0314980:CDS
ATATCCATAAGGATTCCCAA+TGG 0.696972 2_4:+11147251 None:intergenic
ATGTTAACAGGAAATTCAGG+CGG 0.717135 2_4:-11145991 Msa0314980:intron
TGAGAATACTCTCACAACAG+GGG 0.741501 2_4:-11147229 Msa0314980:intron
CATTTGGGGAAGGTATCTCG+CGG 0.758593 2_4:+11146936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTAATATGTGTAAAA+TGG + chr2_4:11146059-11146078 None:intergenic 15.0%
!! ATTAGTAGATAAGTATAAAA+TGG - chr2_4:11146278-11146297 Msa0314980:intron 15.0%
!!! TTTTTTTTCAAATGTGATAT+AGG - chr2_4:11146616-11146635 Msa0314980:intron 15.0%
!!! TTTTTTTCAAATGTGATATA+GGG - chr2_4:11146617-11146636 Msa0314980:intron 15.0%
!!! TTTTCTTAATATGTGTAAAA+TGG + chr2_4:11146059-11146078 None:intergenic 15.0%
!! ATTAGTAGATAAGTATAAAA+TGG - chr2_4:11146278-11146297 Msa0314980:intron 15.0%
!!! TTTTTTTTCAAATGTGATAT+AGG - chr2_4:11146616-11146635 Msa0314980:intron 15.0%
!!! TTTTTTTCAAATGTGATATA+GGG - chr2_4:11146617-11146636 Msa0314980:intron 15.0%
!!! TTCCTTAATTTTAATCCATA+GGG + chr2_4:11145995-11146014 None:intergenic 20.0%
!!! TTTCCTTAATTTTAATCCAT+AGG + chr2_4:11145996-11146015 None:intergenic 20.0%
!! GATTAAAAAAAGAAAGAGAA+TGG - chr2_4:11146082-11146101 Msa0314980:intron 20.0%
!! CGATAATGAAAATACATAAA+TGG + chr2_4:11146134-11146153 None:intergenic 20.0%
!!! TTTTCTCAATTAAGTTTAGA+AGG - chr2_4:11146328-11146347 Msa0314980:intron 20.0%
!! TTTCTCAATTAAGTTTAGAA+GGG - chr2_4:11146329-11146348 Msa0314980:intron 20.0%
!! GAACTCTCTAATTAATATTA+TGG + chr2_4:11146535-11146554 None:intergenic 20.0%
!! TTTCAAAACCTATTAGTATA+AGG + chr2_4:11147210-11147229 None:intergenic 20.0%
!!! TTTCAGTTTTAGAATAAACA+TGG + chr2_4:11147321-11147340 None:intergenic 20.0%
!!! TTCCTTAATTTTAATCCATA+GGG + chr2_4:11145995-11146014 None:intergenic 20.0%
!!! TTTCCTTAATTTTAATCCAT+AGG + chr2_4:11145996-11146015 None:intergenic 20.0%
!! GATTAAAAAAAGAAAGAGAA+TGG - chr2_4:11146082-11146101 Msa0314980:intron 20.0%
!! CGATAATGAAAATACATAAA+TGG + chr2_4:11146134-11146153 None:intergenic 20.0%
!!! TTTTCTCAATTAAGTTTAGA+AGG - chr2_4:11146328-11146347 Msa0314980:intron 20.0%
!! TTTCTCAATTAAGTTTAGAA+GGG - chr2_4:11146329-11146348 Msa0314980:intron 20.0%
!! GAACTCTCTAATTAATATTA+TGG + chr2_4:11146535-11146554 None:intergenic 20.0%
!! TTTCAAAACCTATTAGTATA+AGG + chr2_4:11147210-11147229 None:intergenic 20.0%
!!! TTTCAGTTTTAGAATAAACA+TGG + chr2_4:11147321-11147340 None:intergenic 20.0%
! GAATCTAAGAATTTACATGT+TGG - chr2_4:11145501-11145520 Msa0314980:three_prime_UTR 25.0%
! ATCCTTCATCTATAACTATT+TGG + chr2_4:11145671-11145690 None:intergenic 25.0%
! ACATAAAGAACCACAAATAA+GGG + chr2_4:11145937-11145956 None:intergenic 25.0%
! AACATAAAGAACCACAAATA+AGG + chr2_4:11145938-11145957 None:intergenic 25.0%
!!! TATTGTTTTTCACTTTGCAT+TGG + chr2_4:11146157-11146176 None:intergenic 25.0%
! AATGCAAAGTGAAAAACAAT+AGG - chr2_4:11146156-11146175 Msa0314980:intron 25.0%
! AAAGTGAAAAACAATAGGTT+AGG - chr2_4:11146161-11146180 Msa0314980:intron 25.0%
! AAGTGAAAAACAATAGGTTA+GGG - chr2_4:11146162-11146181 Msa0314980:intron 25.0%
! TATAAGCTCATATGACAAAA+AGG + chr2_4:11146463-11146482 None:intergenic 25.0%
! TCTGCTATAAACTAGAAAAT+TGG - chr2_4:11146494-11146513 Msa0314980:intron 25.0%
!! ATTAATATTATGGCTCTGTT+TGG + chr2_4:11146525-11146544 None:intergenic 25.0%
! TATTAATTAGAGAGTTCGAT+TGG - chr2_4:11146538-11146557 Msa0314980:intron 25.0%
!! TACTGAAATCTAAAACAAGA+TGG + chr2_4:11146715-11146734 None:intergenic 25.0%
! TACACGATAAAATACAATGA+AGG + chr2_4:11146899-11146918 None:intergenic 25.0%
! ATGAAGTATAAATATGGGAA+AGG + chr2_4:11146940-11146959 None:intergenic 25.0%
! CGCAAATGAAGTATAAATAT+GGG + chr2_4:11146945-11146964 None:intergenic 25.0%
! ACGCAAATGAAGTATAAATA+TGG + chr2_4:11146946-11146965 None:intergenic 25.0%
!!! ATTTCTAGACTTCAATTTTG+TGG + chr2_4:11147033-11147052 None:intergenic 25.0%
!! TTTTGCTTTCAATCTAATTC+AGG - chr2_4:11147099-11147118 Msa0314980:intron 25.0%
!!! CATGTAATCAACTTTTTTTG+TGG - chr2_4:11147233-11147252 Msa0314980:CDS 25.0%
! GAATCTAAGAATTTACATGT+TGG - chr2_4:11145501-11145520 Msa0314980:three_prime_UTR 25.0%
! ATCCTTCATCTATAACTATT+TGG + chr2_4:11145671-11145690 None:intergenic 25.0%
! ACATAAAGAACCACAAATAA+GGG + chr2_4:11145937-11145956 None:intergenic 25.0%
! AACATAAAGAACCACAAATA+AGG + chr2_4:11145938-11145957 None:intergenic 25.0%
!!! TATTGTTTTTCACTTTGCAT+TGG + chr2_4:11146157-11146176 None:intergenic 25.0%
! AATGCAAAGTGAAAAACAAT+AGG - chr2_4:11146156-11146175 Msa0314980:intron 25.0%
! AAAGTGAAAAACAATAGGTT+AGG - chr2_4:11146161-11146180 Msa0314980:intron 25.0%
! AAGTGAAAAACAATAGGTTA+GGG - chr2_4:11146162-11146181 Msa0314980:intron 25.0%
! TATAAGCTCATATGACAAAA+AGG + chr2_4:11146463-11146482 None:intergenic 25.0%
! TCTGCTATAAACTAGAAAAT+TGG - chr2_4:11146494-11146513 Msa0314980:intron 25.0%
!! ATTAATATTATGGCTCTGTT+TGG + chr2_4:11146525-11146544 None:intergenic 25.0%
! TATTAATTAGAGAGTTCGAT+TGG - chr2_4:11146538-11146557 Msa0314980:intron 25.0%
!! TACTGAAATCTAAAACAAGA+TGG + chr2_4:11146715-11146734 None:intergenic 25.0%
! TACACGATAAAATACAATGA+AGG + chr2_4:11146899-11146918 None:intergenic 25.0%
! ATGAAGTATAAATATGGGAA+AGG + chr2_4:11146940-11146959 None:intergenic 25.0%
! CGCAAATGAAGTATAAATAT+GGG + chr2_4:11146945-11146964 None:intergenic 25.0%
! ACGCAAATGAAGTATAAATA+TGG + chr2_4:11146946-11146965 None:intergenic 25.0%
!!! ATTTCTAGACTTCAATTTTG+TGG + chr2_4:11147033-11147052 None:intergenic 25.0%
!! TTTTGCTTTCAATCTAATTC+AGG - chr2_4:11147099-11147118 Msa0314980:intron 25.0%
!!! CATGTAATCAACTTTTTTTG+TGG - chr2_4:11147233-11147252 Msa0314980:CDS 25.0%
GAAATAAAGCCTGTTGTTAT+TGG - chr2_4:11145477-11145496 Msa0314980:three_prime_UTR 30.0%
TTAGATTCACCAATAACAAC+AGG + chr2_4:11145489-11145508 None:intergenic 30.0%
! AGAGTATTCTCATATCCATA+AGG + chr2_4:11145552-11145571 None:intergenic 30.0%
!! TTGTTAAGTTGAATCCAACA+TGG - chr2_4:11145592-11145611 Msa0314980:CDS 30.0%
CTAATGAAAGTTTACCATGT+TGG + chr2_4:11145609-11145628 None:intergenic 30.0%
TGCCAAATAGTTATAGATGA+AGG - chr2_4:11145666-11145685 Msa0314980:CDS 30.0%
TCAGATAAAACAAAATCGCT+TGG - chr2_4:11145758-11145777 Msa0314980:intron 30.0%
TTATGCGATGTAAATTATGC+AGG - chr2_4:11145814-11145833 Msa0314980:intron 30.0%
! TGCCCTATGGATTAAAATTA+AGG - chr2_4:11145990-11146009 Msa0314980:intron 30.0%
!! GAAAGCGTTGTTAAAATTAG+TGG - chr2_4:11146251-11146270 Msa0314980:intron 30.0%
! TATGACAAAAAGGACTTGTT+TGG + chr2_4:11146453-11146472 None:intergenic 30.0%
ATGTGATATAGGGAGTAATT+TGG - chr2_4:11146627-11146646 Msa0314980:intron 30.0%
AAACTGTACAATGTAACCAA+CGG - chr2_4:11146652-11146671 Msa0314980:intron 30.0%
TATATTACCTTTCCTTGTGA+AGG + chr2_4:11146871-11146890 None:intergenic 30.0%
TGAAAGCAAAACATTCTTGA+AGG + chr2_4:11147090-11147109 None:intergenic 30.0%
TTTCAATCTAATTCAGGTAC+CGG - chr2_4:11147105-11147124 Msa0314980:intron 30.0%
AGGTGTTCCATATACAATAA+GGG + chr2_4:11147190-11147209 None:intergenic 30.0%
! AAGGTGTTCCATATACAATA+AGG + chr2_4:11147191-11147210 None:intergenic 30.0%
ATGGAACACCTTATACTAAT+AGG - chr2_4:11147199-11147218 Msa0314980:intron 30.0%
GAAATAAAGCCTGTTGTTAT+TGG - chr2_4:11145477-11145496 Msa0314980:three_prime_UTR 30.0%
TTAGATTCACCAATAACAAC+AGG + chr2_4:11145489-11145508 None:intergenic 30.0%
! AGAGTATTCTCATATCCATA+AGG + chr2_4:11145552-11145571 None:intergenic 30.0%
!! TTGTTAAGTTGAATCCAACA+TGG - chr2_4:11145592-11145611 Msa0314980:CDS 30.0%
CTAATGAAAGTTTACCATGT+TGG + chr2_4:11145609-11145628 None:intergenic 30.0%
TGCCAAATAGTTATAGATGA+AGG - chr2_4:11145666-11145685 Msa0314980:CDS 30.0%
TCAGATAAAACAAAATCGCT+TGG - chr2_4:11145758-11145777 Msa0314980:intron 30.0%
TTATGCGATGTAAATTATGC+AGG - chr2_4:11145814-11145833 Msa0314980:intron 30.0%
! TGCCCTATGGATTAAAATTA+AGG - chr2_4:11145990-11146009 Msa0314980:intron 30.0%
!! GAAAGCGTTGTTAAAATTAG+TGG - chr2_4:11146251-11146270 Msa0314980:intron 30.0%
! TATGACAAAAAGGACTTGTT+TGG + chr2_4:11146453-11146472 None:intergenic 30.0%
ATGTGATATAGGGAGTAATT+TGG - chr2_4:11146627-11146646 Msa0314980:intron 30.0%
AAACTGTACAATGTAACCAA+CGG - chr2_4:11146652-11146671 Msa0314980:intron 30.0%
TATATTACCTTTCCTTGTGA+AGG + chr2_4:11146871-11146890 None:intergenic 30.0%
TGAAAGCAAAACATTCTTGA+AGG + chr2_4:11147090-11147109 None:intergenic 30.0%
TTTCAATCTAATTCAGGTAC+CGG - chr2_4:11147105-11147124 Msa0314980:intron 30.0%
AGGTGTTCCATATACAATAA+GGG + chr2_4:11147190-11147209 None:intergenic 30.0%
! AAGGTGTTCCATATACAATA+AGG + chr2_4:11147191-11147210 None:intergenic 30.0%
ATGGAACACCTTATACTAAT+AGG - chr2_4:11147199-11147218 Msa0314980:intron 30.0%
ATATCCATAAGGATTCCCAA+TGG + chr2_4:11145541-11145560 None:intergenic 35.0%
TATGAGAATACTCTCACAAC+AGG - chr2_4:11145558-11145577 Msa0314980:three_prime_UTR 35.0%
ATGAGAATACTCTCACAACA+GGG - chr2_4:11145559-11145578 Msa0314980:three_prime_UTR 35.0%
AGATGAAGGATGAAAATCTG+TGG - chr2_4:11145680-11145699 Msa0314980:intron 35.0%
! GTAAGCTATACCCTTATTTG+TGG - chr2_4:11145924-11145943 Msa0314980:intron 35.0%
TCAAATGCGACGATTATTGT+GGG + chr2_4:11146036-11146055 None:intergenic 35.0%
! CTTTGTTTGGTAAAAGGTAG+CGG - chr2_4:11146198-11146217 Msa0314980:intron 35.0%
!! AGAATTCTAAGAAGCATTGG+GGG + chr2_4:11146692-11146711 None:intergenic 35.0%
!! GAGAATTCTAAGAAGCATTG+GGG + chr2_4:11146693-11146712 None:intergenic 35.0%
!! GGAGAATTCTAAGAAGCATT+GGG + chr2_4:11146694-11146713 None:intergenic 35.0%
! TGGAGAATTCTAAGAAGCAT+TGG + chr2_4:11146695-11146714 None:intergenic 35.0%
CTATGATCAGAAGTAAAGGA+TGG + chr2_4:11146742-11146761 None:intergenic 35.0%
CATCCTTTACTTCTGATCAT+AGG - chr2_4:11146740-11146759 Msa0314980:intron 35.0%
AGTCCTATGATCAGAAGTAA+AGG + chr2_4:11146746-11146765 None:intergenic 35.0%
ATGTTAACAGGAAATTCAGG+CGG - chr2_4:11146798-11146817 Msa0314980:intron 35.0%
CTTCTAATTACAGAGTCGAT+GGG + chr2_4:11147159-11147178 None:intergenic 35.0%
ACTTCTAATTACAGAGTCGA+TGG + chr2_4:11147160-11147179 None:intergenic 35.0%
GTACCATCCCTTATTGTATA+TGG - chr2_4:11147180-11147199 Msa0314980:intron 35.0%
GTTCCATATACAATAAGGGA+TGG + chr2_4:11147186-11147205 None:intergenic 35.0%
ATATCCATAAGGATTCCCAA+TGG + chr2_4:11145541-11145560 None:intergenic 35.0%
TATGAGAATACTCTCACAAC+AGG - chr2_4:11145558-11145577 Msa0314980:three_prime_UTR 35.0%
ATGAGAATACTCTCACAACA+GGG - chr2_4:11145559-11145578 Msa0314980:three_prime_UTR 35.0%
AGATGAAGGATGAAAATCTG+TGG - chr2_4:11145680-11145699 Msa0314980:intron 35.0%
! GTAAGCTATACCCTTATTTG+TGG - chr2_4:11145924-11145943 Msa0314980:intron 35.0%
TCAAATGCGACGATTATTGT+GGG + chr2_4:11146036-11146055 None:intergenic 35.0%
! CTTTGTTTGGTAAAAGGTAG+CGG - chr2_4:11146198-11146217 Msa0314980:intron 35.0%
!! AGAATTCTAAGAAGCATTGG+GGG + chr2_4:11146692-11146711 None:intergenic 35.0%
!! GAGAATTCTAAGAAGCATTG+GGG + chr2_4:11146693-11146712 None:intergenic 35.0%
!! GGAGAATTCTAAGAAGCATT+GGG + chr2_4:11146694-11146713 None:intergenic 35.0%
! TGGAGAATTCTAAGAAGCAT+TGG + chr2_4:11146695-11146714 None:intergenic 35.0%
CTATGATCAGAAGTAAAGGA+TGG + chr2_4:11146742-11146761 None:intergenic 35.0%
CATCCTTTACTTCTGATCAT+AGG - chr2_4:11146740-11146759 Msa0314980:intron 35.0%
AGTCCTATGATCAGAAGTAA+AGG + chr2_4:11146746-11146765 None:intergenic 35.0%
ATGTTAACAGGAAATTCAGG+CGG - chr2_4:11146798-11146817 Msa0314980:intron 35.0%
CTTCTAATTACAGAGTCGAT+GGG + chr2_4:11147159-11147178 None:intergenic 35.0%
ACTTCTAATTACAGAGTCGA+TGG + chr2_4:11147160-11147179 None:intergenic 35.0%
GTACCATCCCTTATTGTATA+TGG - chr2_4:11147180-11147199 Msa0314980:intron 35.0%
GTTCCATATACAATAAGGGA+TGG + chr2_4:11147186-11147205 None:intergenic 35.0%
TTTGCCATTGGGAATCCTTA+TGG - chr2_4:11145534-11145553 Msa0314980:three_prime_UTR 40.0%
TGAGAATACTCTCACAACAG+GGG - chr2_4:11145560-11145579 Msa0314980:three_prime_UTR 40.0%
AGAGTTCTTAGCAGATTCAG+AGG + chr2_4:11145636-11145655 None:intergenic 40.0%
TGCGATGTAAATTATGCAGG+TGG - chr2_4:11145817-11145836 Msa0314980:intron 40.0%
TAAATTATGCAGGTGGTCAG+TGG - chr2_4:11145824-11145843 Msa0314980:intron 40.0%
ACTGATGCAGCTATTAATGC+AGG - chr2_4:11145902-11145921 Msa0314980:intron 40.0%
CCAACAAATGCTTGGTATTG+AGG + chr2_4:11145965-11145984 None:intergenic 40.0%
CCTCAATACCAAGCATTTGT+TGG - chr2_4:11145962-11145981 Msa0314980:CDS 40.0%
GACGATTATTGTGGGTCAAA+GGG + chr2_4:11146028-11146047 None:intergenic 40.0%
GTCAAATGCGACGATTATTG+TGG + chr2_4:11146037-11146056 None:intergenic 40.0%
!! CGCAAGCTTTGTTTGGTAAA+AGG - chr2_4:11146192-11146211 Msa0314980:intron 40.0%
!! AAGGTAGCGGATAGTTAACA+AGG - chr2_4:11146211-11146230 Msa0314980:intron 40.0%
CGGATGTTAACAGGAAATTC+AGG - chr2_4:11146795-11146814 Msa0314980:intron 40.0%
CTGTGTTTACTCCAACAACA+TGG + chr2_4:11146845-11146864 None:intergenic 40.0%
ATTACCTTTCCTTGTGAAGG+TGG + chr2_4:11146868-11146887 None:intergenic 40.0%
TTTGCCATTGGGAATCCTTA+TGG - chr2_4:11145534-11145553 Msa0314980:three_prime_UTR 40.0%
TGAGAATACTCTCACAACAG+GGG - chr2_4:11145560-11145579 Msa0314980:three_prime_UTR 40.0%
AGAGTTCTTAGCAGATTCAG+AGG + chr2_4:11145636-11145655 None:intergenic 40.0%
TGCGATGTAAATTATGCAGG+TGG - chr2_4:11145817-11145836 Msa0314980:intron 40.0%
TAAATTATGCAGGTGGTCAG+TGG - chr2_4:11145824-11145843 Msa0314980:intron 40.0%
ACTGATGCAGCTATTAATGC+AGG - chr2_4:11145902-11145921 Msa0314980:intron 40.0%
CCAACAAATGCTTGGTATTG+AGG + chr2_4:11145965-11145984 None:intergenic 40.0%
CCTCAATACCAAGCATTTGT+TGG - chr2_4:11145962-11145981 Msa0314980:CDS 40.0%
GACGATTATTGTGGGTCAAA+GGG + chr2_4:11146028-11146047 None:intergenic 40.0%
GTCAAATGCGACGATTATTG+TGG + chr2_4:11146037-11146056 None:intergenic 40.0%
!! CGCAAGCTTTGTTTGGTAAA+AGG - chr2_4:11146192-11146211 Msa0314980:intron 40.0%
!! AAGGTAGCGGATAGTTAACA+AGG - chr2_4:11146211-11146230 Msa0314980:intron 40.0%
CGGATGTTAACAGGAAATTC+AGG - chr2_4:11146795-11146814 Msa0314980:intron 40.0%
CTGTGTTTACTCCAACAACA+TGG + chr2_4:11146845-11146864 None:intergenic 40.0%
ATTACCTTTCCTTGTGAAGG+TGG + chr2_4:11146868-11146887 None:intergenic 40.0%
! GACAGAGTTGCTTTGCCATT+GGG - chr2_4:11145523-11145542 Msa0314980:three_prime_UTR 45.0%
AGATACCTTCCCCAAATGGA+GGG - chr2_4:11145858-11145877 Msa0314980:intron 45.0%
! TTTGATAGCCCCTCCATTTG+GGG + chr2_4:11145870-11145889 None:intergenic 45.0%
! CTTTGATAGCCCCTCCATTT+GGG + chr2_4:11145871-11145890 None:intergenic 45.0%
GCAACAAGCCAACAAATGCT+TGG + chr2_4:11145973-11145992 None:intergenic 45.0%
!! TTTGTTGGCTTGTTGCCCTA+TGG - chr2_4:11145977-11145996 Msa0314980:CDS 45.0%
CGACGATTATTGTGGGTCAA+AGG + chr2_4:11146029-11146048 None:intergenic 45.0%
GGCAAAAGTAAAGTGACCGT+TGG + chr2_4:11146671-11146690 None:intergenic 45.0%
TATGATCTTGTGTTCGCGCA+CGG - chr2_4:11146775-11146794 Msa0314980:intron 45.0%
! GGACCATTGATTGACTCTCA+TGG - chr2_4:11146819-11146838 Msa0314980:intron 45.0%
TGGCCATGAGAGTCAATCAA+TGG + chr2_4:11146825-11146844 None:intergenic 45.0%
TAAACACAGCCACCTTCACA+AGG - chr2_4:11146856-11146875 Msa0314980:intron 45.0%
GTTAACTCCTGATGAAGCTC+CGG + chr2_4:11147127-11147146 None:intergenic 45.0%
! GACAGAGTTGCTTTGCCATT+GGG - chr2_4:11145523-11145542 Msa0314980:three_prime_UTR 45.0%
AGATACCTTCCCCAAATGGA+GGG - chr2_4:11145858-11145877 Msa0314980:intron 45.0%
! TTTGATAGCCCCTCCATTTG+GGG + chr2_4:11145870-11145889 None:intergenic 45.0%
! CTTTGATAGCCCCTCCATTT+GGG + chr2_4:11145871-11145890 None:intergenic 45.0%
GCAACAAGCCAACAAATGCT+TGG + chr2_4:11145973-11145992 None:intergenic 45.0%
!! TTTGTTGGCTTGTTGCCCTA+TGG - chr2_4:11145977-11145996 Msa0314980:CDS 45.0%
CGACGATTATTGTGGGTCAA+AGG + chr2_4:11146029-11146048 None:intergenic 45.0%
GGCAAAAGTAAAGTGACCGT+TGG + chr2_4:11146671-11146690 None:intergenic 45.0%
TATGATCTTGTGTTCGCGCA+CGG - chr2_4:11146775-11146794 Msa0314980:intron 45.0%
! GGACCATTGATTGACTCTCA+TGG - chr2_4:11146819-11146838 Msa0314980:intron 45.0%
TGGCCATGAGAGTCAATCAA+TGG + chr2_4:11146825-11146844 None:intergenic 45.0%
TAAACACAGCCACCTTCACA+AGG - chr2_4:11146856-11146875 Msa0314980:intron 45.0%
GTTAACTCCTGATGAAGCTC+CGG + chr2_4:11147127-11147146 None:intergenic 45.0%
! GGACAGAGTTGCTTTGCCAT+TGG - chr2_4:11145522-11145541 Msa0314980:three_prime_UTR 50.0%
ATGCAGGTGGTCAGTGGTTT+AGG - chr2_4:11145830-11145849 Msa0314980:intron 50.0%
!! CATTTGGGGAAGGTATCTCG+CGG + chr2_4:11145856-11145875 None:intergenic 50.0%
GAGATACCTTCCCCAAATGG+AGG - chr2_4:11145857-11145876 Msa0314980:intron 50.0%
GATACCTTCCCCAAATGGAG+GGG - chr2_4:11145859-11145878 Msa0314980:intron 50.0%
! CCTTTGATAGCCCCTCCATT+TGG + chr2_4:11145872-11145891 None:intergenic 50.0%
CCAAATGGAGGGGCTATCAA+AGG - chr2_4:11145869-11145888 Msa0314980:intron 50.0%
!! CGATGCACGCAAGCTTTGTT+TGG - chr2_4:11146185-11146204 Msa0314980:intron 50.0%
GACTCTCATGGCCATGTTGT+TGG - chr2_4:11146831-11146850 Msa0314980:intron 50.0%
ACAGCCACCTTCACAAGGAA+AGG - chr2_4:11146861-11146880 Msa0314980:intron 50.0%
! GGACAGAGTTGCTTTGCCAT+TGG - chr2_4:11145522-11145541 Msa0314980:three_prime_UTR 50.0%
ATGCAGGTGGTCAGTGGTTT+AGG - chr2_4:11145830-11145849 Msa0314980:intron 50.0%
!! CATTTGGGGAAGGTATCTCG+CGG + chr2_4:11145856-11145875 None:intergenic 50.0%
GAGATACCTTCCCCAAATGG+AGG - chr2_4:11145857-11145876 Msa0314980:intron 50.0%
GATACCTTCCCCAAATGGAG+GGG - chr2_4:11145859-11145878 Msa0314980:intron 50.0%
! CCTTTGATAGCCCCTCCATT+TGG + chr2_4:11145872-11145891 None:intergenic 50.0%
CCAAATGGAGGGGCTATCAA+AGG - chr2_4:11145869-11145888 Msa0314980:intron 50.0%
!! CGATGCACGCAAGCTTTGTT+TGG - chr2_4:11146185-11146204 Msa0314980:intron 50.0%
GACTCTCATGGCCATGTTGT+TGG - chr2_4:11146831-11146850 Msa0314980:intron 50.0%
ACAGCCACCTTCACAAGGAA+AGG - chr2_4:11146861-11146880 Msa0314980:intron 50.0%
CGCGAGATACCTTCCCCAAA+TGG - chr2_4:11145854-11145873 Msa0314980:intron 55.0%
ATAGCCCCTCCATTTGGGGA+AGG + chr2_4:11145866-11145885 None:intergenic 55.0%
GTTCGCGCACGGATGTTAAC+AGG - chr2_4:11146786-11146805 Msa0314980:intron 55.0%
!! TCAGGTACCGGAGCTTCATC+AGG - chr2_4:11147117-11147136 Msa0314980:intron 55.0%
CGCGAGATACCTTCCCCAAA+TGG - chr2_4:11145854-11145873 Msa0314980:intron 55.0%
ATAGCCCCTCCATTTGGGGA+AGG + chr2_4:11145866-11145885 None:intergenic 55.0%
GTTCGCGCACGGATGTTAAC+AGG - chr2_4:11146786-11146805 Msa0314980:intron 55.0%
!! TCAGGTACCGGAGCTTCATC+AGG - chr2_4:11147117-11147136 Msa0314980:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 11145459 11147352 11145459 ID=Msa0314980;Name=Msa0314980
chr2_4 mRNA 11145459 11147352 11145459 ID=Msa0314980-mRNA-1;Parent=Msa0314980;Name=Msa0314980-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.66|0.5|1|1|1|4|125|130
chr2_4 exon 11145459 11145690 11145459 ID=Msa0314980-mRNA-1:exon:4306;Parent=Msa0314980-mRNA-1
chr2_4 exon 11145929 11146003 11145929 ID=Msa0314980-mRNA-1:exon:4305;Parent=Msa0314980-mRNA-1
chr2_4 exon 11146888 11146975 11146888 ID=Msa0314980-mRNA-1:exon:4304;Parent=Msa0314980-mRNA-1
chr2_4 exon 11147230 11147352 11147230 ID=Msa0314980-mRNA-1:exon:4303;Parent=Msa0314980-mRNA-1
chr2_4 CDS 11147230 11147352 11147230 ID=Msa0314980-mRNA-1:cds;Parent=Msa0314980-mRNA-1
chr2_4 CDS 11146888 11146975 11146888 ID=Msa0314980-mRNA-1:cds;Parent=Msa0314980-mRNA-1
chr2_4 CDS 11145929 11146003 11145929 ID=Msa0314980-mRNA-1:cds;Parent=Msa0314980-mRNA-1
chr2_4 CDS 11145584 11145690 11145584 ID=Msa0314980-mRNA-1:cds;Parent=Msa0314980-mRNA-1
chr2_4 three_prime_UTR 11145459 11145583 11145459 ID=Msa0314980-mRNA-1:three_prime_utr;Parent=Msa0314980-mRNA-1
Gene Sequence

>Msa0314980

GTTGATGTTGATGGATACGAAATAAAGCCTGTTGTTATTGGTGAATCTAAGAATTTACATGTTGGACAGAGTTGCTTTGCCATTGGGAATCCTTATGGATATGAGAATACTCTCACAACAGGGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCCCCAAATGGAGGGGCTATCAAAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGAAATTCAGGCGGACCATTGATTGACTCTCATGGCCATGTTGTTGGAGTAAACACAGCCACCTTCACAAGGAAAGGTACCGGAGCTTCATCAGGAGTTAACTTTGCAATTCCCATCGACTCTGTAATTAGAAGTGTACCATCCCTTATTGTATATGGAACACCTTATACTAATAGGTTTTGA

Protein sequence

>Msa0314980

VDVDGYEIKPVVIGESKNLHVGQSCFAIGNPYGYENTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGPLIDSHGHVVGVNTATFTRKGTGASSGVNFAIPIDSVIRSVPSLIVYGTPYTNRF*