AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451780 MtrunA17_Chr2g0285791 95.652 184 8 0 18 201 142 325 1.10e-126 360
Msa1451780 MtrunA17_Chr6g0453121 49.730 185 89 2 12 194 168 350 7.49e-48 162
Msa1451780 MtrunA17_Chr6g0450671 46.448 183 84 4 13 194 154 323 2.24e-43 150
Msa1451780 MtrunA17_Chr7g0272621 34.911 169 100 5 18 185 156 315 5.18e-20 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451780 AT4G18370.1 75.000 184 46 0 18 201 140 323 2.11e-98 288
Msa1451780 AT4G18370.2 73.600 125 33 0 18 142 140 264 2.00e-61 192
Msa1451780 AT5G39830.1 48.925 186 87 3 12 193 158 339 1.39e-49 167
Msa1451780 AT4G18370.3 71.875 96 27 0 18 113 140 235 2.36e-44 148
Msa1451780 AT3G27925.1 47.753 178 79 4 18 194 166 330 6.70e-43 149
Msa1451780 AT3G27925.2 47.753 178 79 4 18 194 166 330 6.70e-43 149
Msa1451780 AT5G39830.2 44.086 186 82 3 12 193 158 325 1.11e-41 145
Msa1451780 AT5G27660.2 35.294 170 98 6 16 183 156 315 5.16e-17 79.0
Msa1451780 AT5G27660.1 35.294 170 98 6 16 183 151 310 6.31e-17 78.6

Find 51 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGGGAAGGGAAAATAAT+TGG 0.154649 tig0033561:+651 Msa1451780:CDS
GAAATAAAGCCTGTTGTTAT+TGG 0.182109 tig0033561:+2634 Msa1451780:CDS
CTTTGATAGCCCCTCCATTT+GGG 0.261671 tig0033561:-3025 None:intergenic
TTTCAAAACCTATTAGTATA+AGG 0.279957 tig0033561:-4368 None:intergenic
CCTTTGATAGCCCCTCCATT+TGG 0.294286 tig0033561:-3026 None:intergenic
ATGCAGGTGGTCAGTGGTTT+AGG 0.298156 tig0033561:+2987 Msa1451780:intron
GTACCATCCCTTATTGTATA+TGG 0.304932 tig0033561:+4341 Msa1451780:CDS
TTTGCCATTGGGAATCCTTA+TGG 0.306916 tig0033561:+2691 Msa1451780:CDS
ATGGAACACCTTATACTAAT+AGG 0.308611 tig0033561:+4360 Msa1451780:CDS
CCAGGGAAGGGAAAATAATT+GGG 0.392744 tig0033561:+652 Msa1451780:CDS
GACAGAGTTGCTTTGCCATT+GGG 0.398813 tig0033561:+2680 Msa1451780:CDS
GACTCTCATGGCCATGTTGT+TGG 0.403469 tig0033561:+3992 Msa1451780:CDS
TATTTGCAGGTTGATGTTGA+TGG 0.405637 tig0033561:+2607 Msa1451780:intron
AAGGTGTTCCATATACAATA+AGG 0.408680 tig0033561:-4349 None:intergenic
CGGATGTTAACAGGAAATTC+AGG 0.411871 tig0033561:+3956 Msa1451780:intron
TATGAGAATACTCTCACAAC+AGG 0.425005 tig0033561:+2715 Msa1451780:CDS
TTAGATTCACCAATAACAAC+AGG 0.438438 tig0033561:-2643 None:intergenic
TCAGGTACCGGAGCTTCATC+AGG 0.470733 tig0033561:+4278 Msa1451780:intron
AGGTGTTCCATATACAATAA+GGG 0.471453 tig0033561:-4348 None:intergenic
ATTACCTTTCCTTGTGAAGG+TGG 0.475479 tig0033561:-4026 None:intergenic
CCTGGAAAAGTTATTCCCAT+TGG 0.481148 tig0033561:-634 None:intergenic
CGCGAGATACCTTCCCCAAA+TGG 0.481655 tig0033561:+3011 Msa1451780:CDS
TATATTACCTTTCCTTGTGA+AGG 0.491019 tig0033561:-4029 None:intergenic
GGACAGAGTTGCTTTGCCAT+TGG 0.512294 tig0033561:+2679 Msa1451780:CDS
TATTCCCATTGGCATCAACT+AGG 0.514434 tig0033561:-623 None:intergenic
AGAGTATTCTCATATCCATA+AGG 0.524491 tig0033561:-2706 None:intergenic
GTTAACTCCTGATGAAGCTC+CGG 0.541628 tig0033561:-4285 None:intergenic
ACTGATGCAGCTATTAATGC+AGG 0.543845 tig0033561:+3059 Msa1451780:CDS
ACTTCTAATTACAGAGTCGA+TGG 0.545161 tig0033561:-4318 None:intergenic
GGACCATTGATTGACTCTCA+TGG 0.566441 tig0033561:+3980 Msa1451780:CDS
TTTGATAGCCCCTCCATTTG+GGG 0.566803 tig0033561:-3024 None:intergenic
TGGCCATGAGAGTCAATCAA+TGG 0.568108 tig0033561:-3983 None:intergenic
ATATGATCTAGCTGTTCTGA+AGG 0.569824 tig0033561:+686 Msa1451780:CDS
AGAACAGCTAGATCATATGA+TGG 0.573622 tig0033561:-681 None:intergenic
CCAAATGGAGGGGCTATCAA+AGG 0.574726 tig0033561:+3026 Msa1451780:CDS
AGATACCTTCCCCAAATGGA+GGG 0.575115 tig0033561:+3015 Msa1451780:CDS
ATAGCCCCTCCATTTGGGGA+AGG 0.577157 tig0033561:-3020 None:intergenic
GAATCTAAGAATTTACATGT+TGG 0.582777 tig0033561:+2658 Msa1451780:CDS
GAGATACCTTCCCCAAATGG+AGG 0.591441 tig0033561:+3014 Msa1451780:CDS
TAAATTATGCAGGTGGTCAG+TGG 0.593859 tig0033561:+2981 Msa1451780:intron
ACAGCCACCTTCACAAGGAA+AGG 0.596510 tig0033561:+4022 Msa1451780:CDS
CTGTGTTTACTCCAACAACA+TGG 0.626621 tig0033561:-4003 None:intergenic
CTTCTAATTACAGAGTCGAT+GGG 0.626746 tig0033561:-4317 None:intergenic
GTTCCATATACAATAAGGGA+TGG 0.636651 tig0033561:-4344 None:intergenic
TAAACACAGCCACCTTCACA+AGG 0.639628 tig0033561:+4017 Msa1451780:CDS
ATGAGAATACTCTCACAACA+GGG 0.643517 tig0033561:+2716 Msa1451780:CDS
GATACCTTCCCCAAATGGAG+GGG 0.644193 tig0033561:+3016 Msa1451780:CDS
ATATCCATAAGGATTCCCAA+TGG 0.696972 tig0033561:-2695 None:intergenic
ATGTTAACAGGAAATTCAGG+CGG 0.717135 tig0033561:+3959 Msa1451780:intron
TGAGAATACTCTCACAACAG+GGG 0.741501 tig0033561:+2717 Msa1451780:CDS
CATTTGGGGAAGGTATCTCG+CGG 0.758593 tig0033561:-3010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGTATTTTTTTTTTAAATAA+TGG - tig0033561:10-29 None:intergenic 10.0%
!! AAAAATAATAATCATATGTC+AGG - tig0033561:2349-2368 None:intergenic 15.0%
!! CAATAGTTAGTTATAAAAAT+TGG - tig0033561:2416-2435 None:intergenic 15.0%
!!! TTTTCTTAATATGTGTAAAA+TGG - tig0033561:3216-3235 None:intergenic 15.0%
!! ATTAGTAGATAAGTATAAAA+TGG + tig0033561:3436-3455 Msa1451780:intron 15.0%
!!! TTTTTTTTCAAATGTGATAT+AGG + tig0033561:3777-3796 Msa1451780:intron 15.0%
!!! TTTTTTTCAAATGTGATATA+GGG + tig0033561:3778-3797 Msa1451780:intron 15.0%
!!! ATCTAAAATAAGAAGTTTGA+TGG - tig0033561:554-573 None:intergenic 20.0%
!!! ATCAAACTTCTTATTTTAGA+TGG + tig0033561:553-572 Msa1451780:intron 20.0%
!! ATTAATGAATAGAAAAGAAG+AGG - tig0033561:727-746 None:intergenic 20.0%
!! AAAATGACTTTCACATATTT+GGG - tig0033561:848-867 None:intergenic 20.0%
!!! TCCTTTTTTTTGTTTTGTTT+TGG + tig0033561:1434-1453 Msa1451780:intron 20.0%
!! ACCAAAACAAAACAAAAAAA+AGG - tig0033561:1438-1457 None:intergenic 20.0%
!! TTAGATATGATATCATAATC+CGG + tig0033561:1968-1987 Msa1451780:intron 20.0%
!! AAATTGGATGAAATAATTAG+TGG + tig0033561:2264-2283 Msa1451780:intron 20.0%
!! TGTAACTAACTATTGATATA+TGG + tig0033561:2483-2502 Msa1451780:intron 20.0%
!!! TTCCTTAATTTTAATCCATA+GGG - tig0033561:3152-3171 None:intergenic 20.0%
!!! TTTCCTTAATTTTAATCCAT+AGG - tig0033561:3153-3172 None:intergenic 20.0%
!! GATTAAAAAAAGAAAGAGAA+TGG + tig0033561:3239-3258 Msa1451780:intron 20.0%
!! CGATAATGAAAATACATAAA+TGG - tig0033561:3291-3310 None:intergenic 20.0%
!!! TTTTCTCAATTAAGTTTAGA+AGG + tig0033561:3488-3507 Msa1451780:intron 20.0%
!! TTTCTCAATTAAGTTTAGAA+GGG + tig0033561:3489-3508 Msa1451780:intron 20.0%
!! GAACTCTCTAATTAATATTA+TGG - tig0033561:3696-3715 None:intergenic 20.0%
!! TTTCAAAACCTATTAGTATA+AGG - tig0033561:4371-4390 None:intergenic 20.0%
!!! TTTCAGTTTTAGAATAAACA+TGG - tig0033561:4482-4501 None:intergenic 20.0%
! ATAAGATAATTGCTCTACTA+TGG - tig0033561:201-220 None:intergenic 25.0%
! GAAAAACTGTTTGAAAACAT+TGG + tig0033561:284-303 Msa1451780:five_prime_UTR 25.0%
! ATAATTTGACAAACTATCTC+AGG + tig0033561:339-358 Msa1451780:five_prime_UTR 25.0%
! AAAGACTATATCTATGTCAT+GGG - tig0033561:378-397 None:intergenic 25.0%
! TAAAGACTATATCTATGTCA+TGG - tig0033561:379-398 None:intergenic 25.0%
! ACCTTGAAAGTTTGAAAAAA+TGG - tig0033561:415-434 None:intergenic 25.0%
!!! GTCATTTGTTTTTTTTCTTC+TGG + tig0033561:436-455 Msa1451780:CDS 25.0%
! GGAAGAAACATATGTAATAT+TGG + tig0033561:574-593 Msa1451780:intron 25.0%
! AACAGAGAAATCAAAATGTT+CGG - tig0033561:756-775 None:intergenic 25.0%
! GAAAATGACTTTCACATATT+TGG - tig0033561:849-868 None:intergenic 25.0%
! TGATATTATGCAACAAACTA+TGG + tig0033561:924-943 Msa1451780:intron 25.0%
! TACAAAGCTGATAAAAAAAG+TGG - tig0033561:1097-1116 None:intergenic 25.0%
!! TTCTTTTGGCATTTGATAAA+TGG + tig0033561:1130-1149 Msa1451780:intron 25.0%
! CTCAAAATAATTCAAGAATC+AGG - tig0033561:1156-1175 None:intergenic 25.0%
!!! CTGATTCTTGAATTATTTTG+AGG + tig0033561:1154-1173 Msa1451780:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG + tig0033561:1249-1268 Msa1451780:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG + tig0033561:1277-1296 Msa1451780:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG + tig0033561:1249-1268 Msa1451780:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG + tig0033561:1277-1296 Msa1451780:intron 25.0%
! TTTATATTCAAGTCGTGAAT+CGG - tig0033561:1386-1405 None:intergenic 25.0%
! TAGAACCTTACACTAATATT+GGG - tig0033561:1486-1505 None:intergenic 25.0%
! TTAGAACCTTACACTAATAT+TGG - tig0033561:1487-1506 None:intergenic 25.0%
! ATAAAGAAACCAACTTACTA+GGG - tig0033561:1548-1567 None:intergenic 25.0%
! GTCTTATCATATTAAGTGTT+TGG + tig0033561:1640-1659 Msa1451780:intron 25.0%
! TACATCTTATTCTTCATTCT+TGG - tig0033561:1902-1921 None:intergenic 25.0%
! ATAAGATGAAGAATACAGAA+TGG - tig0033561:1999-2018 None:intergenic 25.0%
! GACTTATTTGTAAAGAAGTT+AGG + tig0033561:2144-2163 Msa1451780:intron 25.0%
! ATAATTAGTGGCATGATAAT+AGG + tig0033561:2276-2295 Msa1451780:intron 25.0%
! TAATTAGTGGCATGATAATA+GGG + tig0033561:2277-2296 Msa1451780:intron 25.0%
!!! CAAAGTATTTTTACAGCTAA+GGG - tig0033561:2525-2544 None:intergenic 25.0%
!!! ACAAAGTATTTTTACAGCTA+AGG - tig0033561:2526-2545 None:intergenic 25.0%
! AAAGTAAGATTCACAAAAGT+AGG - tig0033561:2565-2584 None:intergenic 25.0%
! GAATCTAAGAATTTACATGT+TGG + tig0033561:2658-2677 Msa1451780:CDS 25.0%
! ATCCTTCATCTATAACTATT+TGG - tig0033561:2828-2847 None:intergenic 25.0%
! ACATAAAGAACCACAAATAA+GGG - tig0033561:3094-3113 None:intergenic 25.0%
! AACATAAAGAACCACAAATA+AGG - tig0033561:3095-3114 None:intergenic 25.0%
!!! TATTGTTTTTCACTTTGCAT+TGG - tig0033561:3314-3333 None:intergenic 25.0%
! AATGCAAAGTGAAAAACAAT+AGG + tig0033561:3313-3332 Msa1451780:intron 25.0%
! AAAGTGAAAAACAATAGGTT+AGG + tig0033561:3318-3337 Msa1451780:intron 25.0%
! AAGTGAAAAACAATAGGTTA+GGG + tig0033561:3319-3338 Msa1451780:intron 25.0%
! ATAAGCTCATATGACAAAAA+AGG - tig0033561:3623-3642 None:intergenic 25.0%
! TCTGCTATAAACTAGAAAAT+TGG + tig0033561:3655-3674 Msa1451780:intron 25.0%
!! ATTAATATTATGGCTCTGTT+TGG - tig0033561:3686-3705 None:intergenic 25.0%
! TATTAATTAGAGAGTTCGAT+TGG + tig0033561:3699-3718 Msa1451780:intron 25.0%
!! TACTGAAATCTAAAACAAGA+TGG - tig0033561:3876-3895 None:intergenic 25.0%
! TACACGATAAAATACAATGA+AGG - tig0033561:4060-4079 None:intergenic 25.0%
! ATGAAGTATAAATATGGGAA+AGG - tig0033561:4101-4120 None:intergenic 25.0%
! CGCAAATGAAGTATAAATAT+GGG - tig0033561:4106-4125 None:intergenic 25.0%
! ACGCAAATGAAGTATAAATA+TGG - tig0033561:4107-4126 None:intergenic 25.0%
!!! ATTTCTAGACTTCAATTTTG+TGG - tig0033561:4194-4213 None:intergenic 25.0%
!! TTTTGCTTTCAATCTAATTC+AGG + tig0033561:4260-4279 Msa1451780:intron 25.0%
!!! CATGTAATCAACTTTTTTTG+TGG + tig0033561:4394-4413 Msa1451780:three_prime_UTR 25.0%
! AAATACGACGCTTTAGATTA+AGG + tig0033561:23-42 Msa1451780:five_prime_UTR 30.0%
TGACACTAATATCTAGATAC+TGG - tig0033561:143-162 None:intergenic 30.0%
TTGCTTTCAAGATGTTGTAA+TGG + tig0033561:232-251 Msa1451780:five_prime_UTR 30.0%
ACTGTGAATACCTAAATGTA+AGG + tig0033561:307-326 Msa1451780:five_prime_UTR 30.0%
!!! GCCATTTTTTCAAACTTTCA+AGG + tig0033561:411-430 Msa1451780:CDS 30.0%
TTTAGCTACAACATGGTAAT+TGG - tig0033561:473-492 None:intergenic 30.0%
GAGTTTATACTTCTATCTGT+AGG + tig0033561:596-615 Msa1451780:intron 30.0%
TGAATAGAAAAGAAGAGGAT+TGG - tig0033561:722-741 None:intergenic 30.0%
ACAGAGAAATCAAAATGTTC+GGG - tig0033561:755-774 None:intergenic 30.0%
ATAGATACACGCTAACATTT+GGG - tig0033561:1005-1024 None:intergenic 30.0%
AATAGATACACGCTAACATT+TGG - tig0033561:1006-1025 None:intergenic 30.0%
GTGATTCGTTACAATGAATT+AGG - tig0033561:1052-1071 None:intergenic 30.0%
!! ATAACCAACCACTTTTCTTT+TGG + tig0033561:1116-1135 Msa1451780:intron 30.0%
ATCAAATGCCAAAAGAAAAG+TGG - tig0033561:1127-1146 None:intergenic 30.0%
ACACTAATATTGGGAATCAA+AGG - tig0033561:1477-1496 None:intergenic 30.0%
TGATTCCCAATATTAGTGTA+AGG + tig0033561:1478-1497 Msa1451780:intron 30.0%
CATAAAGAAACCAACTTACT+AGG - tig0033561:1549-1568 None:intergenic 30.0%
!! CTAGTAAGTTGGTTTCTTTA+TGG + tig0033561:1547-1566 Msa1451780:intron 30.0%
!!! ACAGACAGTTTTTTCTTACT+GGG - tig0033561:1622-1641 None:intergenic 30.0%
! TCTAAGACCTCAGATAATTT+AGG + tig0033561:1697-1716 Msa1451780:intron 30.0%
TTCTCCTCGTCATATTAAAA+GGG - tig0033561:1822-1841 None:intergenic 30.0%
TCTTATTCTTCATTCTTGGA+CGG - tig0033561:1898-1917 None:intergenic 30.0%
TGAAGAATAAGATGTAACAC+CGG + tig0033561:1906-1925 Msa1451780:intron 30.0%
ATCAGCTAATATGGAATATC+CGG - tig0033561:1928-1947 None:intergenic 30.0%
TTGTAATACATGTTGTCAGT+TGG - tig0033561:2119-2138 None:intergenic 30.0%
!! ATGGTCAACAATTCTGAAAT+TGG + tig0033561:2248-2267 Msa1451780:intron 30.0%
ATGACATTTGATCTATTTGC+AGG + tig0033561:2594-2613 Msa1451780:intron 30.0%
GAAATAAAGCCTGTTGTTAT+TGG + tig0033561:2634-2653 Msa1451780:CDS 30.0%
TTAGATTCACCAATAACAAC+AGG - tig0033561:2646-2665 None:intergenic 30.0%
! AGAGTATTCTCATATCCATA+AGG - tig0033561:2709-2728 None:intergenic 30.0%
!! TTGTTAAGTTGAATCCAACA+TGG + tig0033561:2749-2768 Msa1451780:intron 30.0%
CTAATGAAAGTTTACCATGT+TGG - tig0033561:2766-2785 None:intergenic 30.0%
TGCCAAATAGTTATAGATGA+AGG + tig0033561:2823-2842 Msa1451780:intron 30.0%
TCAGATAAAACAAAATCGCT+TGG + tig0033561:2915-2934 Msa1451780:intron 30.0%
TTATGCGATGTAAATTATGC+AGG + tig0033561:2971-2990 Msa1451780:intron 30.0%
! TGCCCTATGGATTAAAATTA+AGG + tig0033561:3147-3166 Msa1451780:intron 30.0%
AGTGAAAAACAATAGGTTAG+GGG + tig0033561:3320-3339 Msa1451780:intron 30.0%
!! GAAAGCGTTGTTAAAATTAG+TGG + tig0033561:3409-3428 Msa1451780:intron 30.0%
! ATGACAAAAAAGGACTTGTT+TGG - tig0033561:3613-3632 None:intergenic 30.0%
ATGTGATATAGGGAGTAATT+TGG + tig0033561:3788-3807 Msa1451780:intron 30.0%
AAACTGTACAATGTAACCAA+CGG + tig0033561:3813-3832 Msa1451780:intron 30.0%
TATATTACCTTTCCTTGTGA+AGG - tig0033561:4032-4051 None:intergenic 30.0%
TGAAAGCAAAACATTCTTGA+AGG - tig0033561:4251-4270 None:intergenic 30.0%
TTTCAATCTAATTCAGGTAC+CGG + tig0033561:4266-4285 Msa1451780:intron 30.0%
AGGTGTTCCATATACAATAA+GGG - tig0033561:4351-4370 None:intergenic 30.0%
! AAGGTGTTCCATATACAATA+AGG - tig0033561:4352-4371 None:intergenic 30.0%
ATGGAACACCTTATACTAAT+AGG + tig0033561:4360-4379 Msa1451780:CDS 30.0%
GTGCTTTCAATTCAATGAAG+TGG + tig0033561:254-273 Msa1451780:five_prime_UTR 35.0%
!!! TTTTTTTTCTTCTGGTGCAC+AGG + tig0033561:444-463 Msa1451780:CDS 35.0%
! TAGCTAGTTTAGCTACAACA+TGG - tig0033561:480-499 None:intergenic 35.0%
ACGTTGTAAACCACTAGTAT+CGG - tig0033561:503-522 None:intergenic 35.0%
TAGTGGTTTACAACGTTGTA+AGG + tig0033561:507-526 Msa1451780:CDS 35.0%
TGATGGAATTATCAGCACAA+GGG - tig0033561:537-556 None:intergenic 35.0%
TTGATGGAATTATCAGCACA+AGG - tig0033561:538-557 None:intergenic 35.0%
!! TTTTCCTAGTTGATGCCAAT+GGG + tig0033561:619-638 Msa1451780:CDS 35.0%
! CAATGGGAATAACTTTTCCA+GGG + tig0033561:635-654 Msa1451780:CDS 35.0%
AGAACAGCTAGATCATATGA+TGG - tig0033561:684-703 None:intergenic 35.0%
ATATGATCTAGCTGTTCTGA+AGG + tig0033561:686-705 Msa1451780:CDS 35.0%
GATTTCTCTGTTATTCCTGT+TGG + tig0033561:764-783 Msa1451780:intron 35.0%
AGCATATAGAAGAATCCAAC+AGG - tig0033561:782-801 None:intergenic 35.0%
!! TATGGTAATGGATTGGAAAG+TGG - tig0033561:820-839 None:intergenic 35.0%
ATTTGGGCATGTTATGGTAA+TGG - tig0033561:832-851 None:intergenic 35.0%
TCACATATTTGGGCATGTTA+TGG - tig0033561:838-857 None:intergenic 35.0%
AATGCCAAAAGAAAAGTGGT+TGG - tig0033561:1123-1142 None:intergenic 35.0%
! GGAACTAAACATTTGTTGCA+AGG - tig0033561:1417-1436 None:intergenic 35.0%
TCTTTATGGCACAAAAATGC+AGG + tig0033561:1561-1580 Msa1451780:intron 35.0%
AAATGCAGGCATTTGCTTTA+TGG + tig0033561:1575-1594 Msa1451780:intron 35.0%
! TTTTCTTACTGGGACAGAAT+AGG - tig0033561:1612-1631 None:intergenic 35.0%
!!! GACAGACAGTTTTTTCTTAC+TGG - tig0033561:1623-1642 None:intergenic 35.0%
TTGTGTAGTATTAAGGCAGA+TGG - tig0033561:1666-1685 None:intergenic 35.0%
ATCTGCCTTAATACTACACA+AGG + tig0033561:1665-1684 Msa1451780:intron 35.0%
TTGGTCCTTGTGTAGTATTA+AGG - tig0033561:1673-1692 None:intergenic 35.0%
! ATCTGAGGTCTTAGAATACT+TGG - tig0033561:1692-1711 None:intergenic 35.0%
AAGACCTCAGATAATTTAGG+AGG + tig0033561:1700-1719 Msa1451780:intron 35.0%
GTTTCCTCCTAAATTATCTG+AGG - tig0033561:1707-1726 None:intergenic 35.0%
!! GTTTAGAGTTCCTCTTTTCA+AGG + tig0033561:1777-1796 Msa1451780:intron 35.0%
CTTCTCCTCGTCATATTAAA+AGG - tig0033561:1823-1842 None:intergenic 35.0%
TTTAATATGACGAGGAGAAG+AGG + tig0033561:1823-1842 Msa1451780:intron 35.0%
TTAATATGACGAGGAGAAGA+GGG + tig0033561:1824-1843 Msa1451780:intron 35.0%
TACAGTTGCATCAGCTAATA+TGG - tig0033561:1937-1956 None:intergenic 35.0%
ACCATTACTTACAATACTCC+TGG + tig0033561:2040-2059 Msa1451780:intron 35.0%
!! ACCAGGAGTATTGTAAGTAA+TGG - tig0033561:2044-2063 None:intergenic 35.0%
AATACATGTTGTCAGTTGGA+AGG - tig0033561:2115-2134 None:intergenic 35.0%
AGCAAGTTCACAACATTGAA+AGG - tig0033561:2188-2207 None:intergenic 35.0%
CCATTTATGCTTACTGTGAA+AGG - tig0033561:2212-2231 None:intergenic 35.0%
CCTTTCACAGTAAGCATAAA+TGG + tig0033561:2209-2228 Msa1451780:intron 35.0%
TCACAGTAAGCATAAATGGA+AGG + tig0033561:2213-2232 Msa1451780:intron 35.0%
CACAGTAAGCATAAATGGAA+GGG + tig0033561:2214-2233 Msa1451780:intron 35.0%
AGTTAGTTAGACAGGTTAGA+AGG - tig0033561:2387-2406 None:intergenic 35.0%
! GGTTAGTTAGTTAGTTAGAC+AGG - tig0033561:2395-2414 None:intergenic 35.0%
GTAAGATTCACAAAAGTAGG+CGG - tig0033561:2562-2581 None:intergenic 35.0%
!! TATTTGCAGGTTGATGTTGA+TGG + tig0033561:2607-2626 Msa1451780:intron 35.0%
ATATCCATAAGGATTCCCAA+TGG - tig0033561:2698-2717 None:intergenic 35.0%
TATGAGAATACTCTCACAAC+AGG + tig0033561:2715-2734 Msa1451780:CDS 35.0%
ATGAGAATACTCTCACAACA+GGG + tig0033561:2716-2735 Msa1451780:CDS 35.0%
AGATGAAGGATGAAAATCTG+TGG + tig0033561:2837-2856 Msa1451780:intron 35.0%
! GTAAGCTATACCCTTATTTG+TGG + tig0033561:3081-3100 Msa1451780:intron 35.0%
TCAAATGCGACGATTATTGT+GGG - tig0033561:3193-3212 None:intergenic 35.0%
! CTTTGTTTGGTAAAAGGTAG+CGG + tig0033561:3356-3375 Msa1451780:intron 35.0%
!! AGAATTCTAAGAAGCATTGG+GGG - tig0033561:3853-3872 None:intergenic 35.0%
!! GAGAATTCTAAGAAGCATTG+GGG - tig0033561:3854-3873 None:intergenic 35.0%
!! GGAGAATTCTAAGAAGCATT+GGG - tig0033561:3855-3874 None:intergenic 35.0%
! TGGAGAATTCTAAGAAGCAT+TGG - tig0033561:3856-3875 None:intergenic 35.0%
CTATGATCAGAAGTAAAGGA+TGG - tig0033561:3903-3922 None:intergenic 35.0%
CATCCTTTACTTCTGATCAT+AGG + tig0033561:3901-3920 Msa1451780:intron 35.0%
AGTCCTATGATCAGAAGTAA+AGG - tig0033561:3907-3926 None:intergenic 35.0%
ATGTTAACAGGAAATTCAGG+CGG + tig0033561:3959-3978 Msa1451780:intron 35.0%
CTTCTAATTACAGAGTCGAT+GGG - tig0033561:4320-4339 None:intergenic 35.0%
ACTTCTAATTACAGAGTCGA+TGG - tig0033561:4321-4340 None:intergenic 35.0%
GTACCATCCCTTATTGTATA+TGG + tig0033561:4341-4360 Msa1451780:CDS 35.0%
GTTCCATATACAATAAGGGA+TGG - tig0033561:4347-4366 None:intergenic 35.0%
! ACGACGCTTTAGATTAAGGT+TGG + tig0033561:27-46 Msa1451780:five_prime_UTR 40.0%
! GCTTTAGATTAAGGTTGGTC+CGG + tig0033561:32-51 Msa1451780:five_prime_UTR 40.0%
CAACGATATGTTTCGAACAC+CGG - tig0033561:54-73 None:intergenic 40.0%
TTGAGTGTAACCACATGTGT+CGG - tig0033561:95-114 None:intergenic 40.0%
TGCATACGTGCCTTACATTT+AGG - tig0033561:320-339 None:intergenic 40.0%
AAACTAGCTACCGATACTAG+TGG + tig0033561:490-509 Msa1451780:CDS 40.0%
!! GTTTTCCTAGTTGATGCCAA+TGG + tig0033561:618-637 Msa1451780:CDS 40.0%
TATTCCCATTGGCATCAACT+AGG - tig0033561:626-645 None:intergenic 40.0%
CCTGGAAAAGTTATTCCCAT+TGG - tig0033561:637-656 None:intergenic 40.0%
! CCAATGGGAATAACTTTTCC+AGG + tig0033561:634-653 Msa1451780:CDS 40.0%
! GGAATAACTTTTCCAGGGAA+GGG + tig0033561:640-659 Msa1451780:CDS 40.0%
TCCAGGGAAGGGAAAATAAT+TGG + tig0033561:651-670 Msa1451780:CDS 40.0%
CCAGGGAAGGGAAAATAATT+GGG + tig0033561:652-671 Msa1451780:CDS 40.0%
!! GGCATGTTATGGTAATGGAT+TGG - tig0033561:827-846 None:intergenic 40.0%
CTATCTACACTTAGTGTAGC+TGG + tig0033561:1071-1090 Msa1451780:intron 40.0%
ATCGAAAGACCCTAGTAAGT+TGG + tig0033561:1536-1555 Msa1451780:intron 40.0%
GATAATTTAGGAGGAAACCC+TGG + tig0033561:1709-1728 Msa1451780:intron 40.0%
TAATATGACGAGGAGAAGAG+GGG + tig0033561:1825-1844 Msa1451780:intron 40.0%
TAGCTGATGCAACTGTACTA+TGG + tig0033561:1940-1959 Msa1451780:intron 40.0%
AGAATACAGAATGGCAGATC+CGG - tig0033561:1990-2009 None:intergenic 40.0%
! TGGAAGGGAACACATTTTCA+TGG + tig0033561:2229-2248 Msa1451780:intron 40.0%
TTAGACAGGTTAGAAGGACA+GGG - tig0033561:2381-2400 None:intergenic 40.0%
TTTGCCATTGGGAATCCTTA+TGG + tig0033561:2691-2710 Msa1451780:CDS 40.0%
TGAGAATACTCTCACAACAG+GGG + tig0033561:2717-2736 Msa1451780:CDS 40.0%
AGAGTTCTTAGCAGATTCAG+AGG - tig0033561:2793-2812 None:intergenic 40.0%
TGCGATGTAAATTATGCAGG+TGG + tig0033561:2974-2993 Msa1451780:intron 40.0%
TAAATTATGCAGGTGGTCAG+TGG + tig0033561:2981-3000 Msa1451780:intron 40.0%
ACTGATGCAGCTATTAATGC+AGG + tig0033561:3059-3078 Msa1451780:CDS 40.0%
CCAACAAATGCTTGGTATTG+AGG - tig0033561:3122-3141 None:intergenic 40.0%
CCTCAATACCAAGCATTTGT+TGG + tig0033561:3119-3138 Msa1451780:intron 40.0%
GACGATTATTGTGGGTCAAA+GGG - tig0033561:3185-3204 None:intergenic 40.0%
GTCAAATGCGACGATTATTG+TGG - tig0033561:3194-3213 None:intergenic 40.0%
!! CGCAAGCTTTGTTTGGTAAA+AGG + tig0033561:3350-3369 Msa1451780:intron 40.0%
!! AAGGTAGCGGATAGTTAACA+AGG + tig0033561:3369-3388 Msa1451780:intron 40.0%
CGGATGTTAACAGGAAATTC+AGG + tig0033561:3956-3975 Msa1451780:intron 40.0%
CTGTGTTTACTCCAACAACA+TGG - tig0033561:4006-4025 None:intergenic 40.0%
ATTACCTTTCCTTGTGAAGG+TGG - tig0033561:4029-4048 None:intergenic 40.0%
!! GTCGGTGTTGTGTTAATGTC+TGG - tig0033561:77-96 None:intergenic 45.0%
TAACACAACACCGACACATG+TGG + tig0033561:82-101 Msa1451780:five_prime_UTR 45.0%
! GGGAATAACTTTTCCAGGGA+AGG + tig0033561:639-658 Msa1451780:CDS 45.0%
! CCCAATTATTTTCCCTTCCC+TGG - tig0033561:655-674 None:intergenic 45.0%
CTTACTGGGACAGAATAGGA+GGG - tig0033561:1608-1627 None:intergenic 45.0%
TCTTACTGGGACAGAATAGG+AGG - tig0033561:1609-1628 None:intergenic 45.0%
GACACGACCAAATGAGCTAA+CGG + tig0033561:1751-1770 Msa1451780:intron 45.0%
ACACGACCAAATGAGCTAAC+GGG + tig0033561:1752-1771 Msa1451780:intron 45.0%
ATATTAAAAGGGCCCAGGTG+TGG - tig0033561:1811-1830 None:intergenic 45.0%
TCGTCATATTAAAAGGGCCC+AGG - tig0033561:1816-1835 None:intergenic 45.0%
! TGGGCCCTTTTAATATGACG+AGG + tig0033561:1815-1834 Msa1451780:intron 45.0%
ATTCTTGGACGGAGCAAATG+AGG - tig0033561:1887-1906 None:intergenic 45.0%
CTGATGCAACTGTACTATGG+TGG + tig0033561:1943-1962 Msa1451780:intron 45.0%
! AGCTTCTAGAAGAGTAGACC+AGG - tig0033561:2061-2080 None:intergenic 45.0%
! TGGTCTACTCTTCTAGAAGC+TGG + tig0033561:2060-2079 Msa1451780:intron 45.0%
GTTAGACAGGTTAGAAGGAC+AGG - tig0033561:2382-2401 None:intergenic 45.0%
! GACAGAGTTGCTTTGCCATT+GGG + tig0033561:2680-2699 Msa1451780:CDS 45.0%
AGATACCTTCCCCAAATGGA+GGG + tig0033561:3015-3034 Msa1451780:CDS 45.0%
! TTTGATAGCCCCTCCATTTG+GGG - tig0033561:3027-3046 None:intergenic 45.0%
! CTTTGATAGCCCCTCCATTT+GGG - tig0033561:3028-3047 None:intergenic 45.0%
GCAACAAGCCAACAAATGCT+TGG - tig0033561:3130-3149 None:intergenic 45.0%
!! TTTGTTGGCTTGTTGCCCTA+TGG + tig0033561:3134-3153 Msa1451780:intron 45.0%
CGACGATTATTGTGGGTCAA+AGG - tig0033561:3186-3205 None:intergenic 45.0%
GGCAAAAGTAAAGTGACCGT+TGG - tig0033561:3832-3851 None:intergenic 45.0%
TATGATCTTGTGTTCGCGCA+CGG + tig0033561:3936-3955 Msa1451780:intron 45.0%
! GGACCATTGATTGACTCTCA+TGG + tig0033561:3980-3999 Msa1451780:CDS 45.0%
TGGCCATGAGAGTCAATCAA+TGG - tig0033561:3986-4005 None:intergenic 45.0%
TAAACACAGCCACCTTCACA+AGG + tig0033561:4017-4036 Msa1451780:CDS 45.0%
GTTAACTCCTGATGAAGCTC+CGG - tig0033561:4288-4307 None:intergenic 45.0%
!! TGGAGCACTGACACGTATAC+AGG - tig0033561:181-200 None:intergenic 50.0%
CACGACCAAATGAGCTAACG+GGG + tig0033561:1753-1772 Msa1451780:intron 50.0%
ACGACCAAATGAGCTAACGG+GGG + tig0033561:1754-1773 Msa1451780:intron 50.0%
AAACCCCCCGTTAGCTCATT+TGG - tig0033561:1761-1780 None:intergenic 50.0%
GGACGAGTCTCCTTGAAAAG+AGG - tig0033561:1790-1809 None:intergenic 50.0%
AGTGACATGGAAGCCACATG+TGG - tig0033561:1854-1873 None:intergenic 50.0%
AGGTGTAGCGTCAAGTGACA+TGG - tig0033561:1867-1886 None:intergenic 50.0%
ACAGGTTAGAAGGACAGGGA+TGG - tig0033561:2377-2396 None:intergenic 50.0%
! GGACAGAGTTGCTTTGCCAT+TGG + tig0033561:2679-2698 Msa1451780:CDS 50.0%
ATGCAGGTGGTCAGTGGTTT+AGG + tig0033561:2987-3006 Msa1451780:intron 50.0%
!! CATTTGGGGAAGGTATCTCG+CGG - tig0033561:3013-3032 None:intergenic 50.0%
GAGATACCTTCCCCAAATGG+AGG + tig0033561:3014-3033 Msa1451780:CDS 50.0%
GATACCTTCCCCAAATGGAG+GGG + tig0033561:3016-3035 Msa1451780:CDS 50.0%
! CCTTTGATAGCCCCTCCATT+TGG - tig0033561:3029-3048 None:intergenic 50.0%
CCAAATGGAGGGGCTATCAA+AGG + tig0033561:3026-3045 Msa1451780:CDS 50.0%
!! CGATGCACGCAAGCTTTGTT+TGG + tig0033561:3343-3362 Msa1451780:intron 50.0%
GACTCTCATGGCCATGTTGT+TGG + tig0033561:3992-4011 Msa1451780:CDS 50.0%
ACAGCCACCTTCACAAGGAA+AGG + tig0033561:4022-4041 Msa1451780:CDS 50.0%
GTGGTGACAGCTCACAACCA+GGG - tig0033561:1729-1748 None:intergenic 55.0%
GCTCATTTGGTCGTGTCACG+TGG - tig0033561:1748-1767 None:intergenic 55.0%
CGACCAAATGAGCTAACGGG+GGG + tig0033561:1755-1774 Msa1451780:intron 55.0%
AAGGAGACTCGTCCACACCT+GGG + tig0033561:1796-1815 Msa1451780:intron 55.0%
GACATGGAAGCCACATGTGG+CGG - tig0033561:1851-1870 None:intergenic 55.0%
CGCGAGATACCTTCCCCAAA+TGG + tig0033561:3011-3030 Msa1451780:CDS 55.0%
ATAGCCCCTCCATTTGGGGA+AGG - tig0033561:3023-3042 None:intergenic 55.0%
GTTCGCGCACGGATGTTAAC+AGG + tig0033561:3947-3966 Msa1451780:intron 55.0%
!! TCAGGTACCGGAGCTTCATC+AGG + tig0033561:4278-4297 Msa1451780:intron 55.0%
CGTGGTGACAGCTCACAACC+AGG - tig0033561:1730-1749 None:intergenic 60.0%
CAAGGAGACTCGTCCACACC+TGG + tig0033561:1795-1814 Msa1451780:intron 60.0%
AGAAGAGGGGCCGCCACATG+TGG + tig0033561:1838-1857 Msa1451780:intron 65.0%
Chromosome Type Strat End Strand Name
tig0033561 gene 1 4513 1 ID=Msa1451780;Name=Msa1451780
tig0033561 mRNA 1 4513 1 ID=Msa1451780-mRNA-1;Parent=Msa1451780;Name=Msa1451780-mRNA-1;_AED=0.21;_eAED=0.21;_QI=405|1|1|1|1|1|6|125|201
tig0033561 exon 1 528 1 ID=Msa1451780-mRNA-1:exon:18227;Parent=Msa1451780-mRNA-1
tig0033561 exon 618 707 618 ID=Msa1451780-mRNA-1:exon:18228;Parent=Msa1451780-mRNA-1
tig0033561 exon 2616 2738 2616 ID=Msa1451780-mRNA-1:exon:18229;Parent=Msa1451780-mRNA-1
tig0033561 exon 2993 3080 2993 ID=Msa1451780-mRNA-1:exon:18230;Parent=Msa1451780-mRNA-1
tig0033561 exon 3969 4043 3969 ID=Msa1451780-mRNA-1:exon:18231;Parent=Msa1451780-mRNA-1
tig0033561 exon 4282 4513 4282 ID=Msa1451780-mRNA-1:exon:18232;Parent=Msa1451780-mRNA-1
tig0033561 five_prime_UTR 1 405 1 ID=Msa1451780-mRNA-1:five_prime_utr;Parent=Msa1451780-mRNA-1
tig0033561 CDS 406 528 406 ID=Msa1451780-mRNA-1:cds;Parent=Msa1451780-mRNA-1
tig0033561 CDS 618 707 618 ID=Msa1451780-mRNA-1:cds;Parent=Msa1451780-mRNA-1
tig0033561 CDS 2616 2738 2616 ID=Msa1451780-mRNA-1:cds;Parent=Msa1451780-mRNA-1
tig0033561 CDS 2993 3080 2993 ID=Msa1451780-mRNA-1:cds;Parent=Msa1451780-mRNA-1
tig0033561 CDS 3969 4043 3969 ID=Msa1451780-mRNA-1:cds;Parent=Msa1451780-mRNA-1
tig0033561 CDS 4282 4388 4282 ID=Msa1451780-mRNA-1:cds;Parent=Msa1451780-mRNA-1
tig0033561 three_prime_UTR 4389 4513 4389 ID=Msa1451780-mRNA-1:three_prime_utr;Parent=Msa1451780-mRNA-1
Gene Sequence

>Msa1451780

ATGTTGCCATTTTTTCAAACTTTCAAGGTAGTCATTTGTTTTTTTTCTTCTGGTGCACAGGTTACCAATTACCATGTTGTAGCTAAACTAGCTACCGATACTAGTGGTTTACAACGTTGTAAGGTTTTCCTAGTTGATGCCAATGGGAATAACTTTTCCAGGGAAGGGAAAATAATTGGGTTTGATCCATCATATGATCTAGCTGTTCTGAAGGTTGATGTTGATGGATACGAAATAAAGCCTGTTGTTATTGGTGAATCTAAGAATTTACATGTTGGACAGAGTTGCTTTGCCATTGGGAATCCTTATGGATATGAGAATACTCTCACAACAGGGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCCCCAAATGGAGGGGCTATCAAAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGAAATTCAGGCGGACCATTGATTGACTCTCATGGCCATGTTGTTGGAGTAAACACAGCCACCTTCACAAGGAAAGGTACCGGAGCTTCATCAGGAGTTAACTTTGCAATTCCCATCGACTCTGTAATTAGAAGTGTACCATCCCTTATTGTATATGGAACACCTTATACTAATAGGTTTTGA

Protein sequence

>Msa1451780

MLPFFQTFKVVICFFSSGAQVTNYHVVAKLATDTSGLQRCKVFLVDANGNNFSREGKIIGFDPSYDLAVLKVDVDGYEIKPVVIGESKNLHVGQSCFAIGNPYGYENTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGPLIDSHGHVVGVNTATFTRKGTGASSGVNFAIPIDSVIRSVPSLIVYGTPYTNRF*