AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133170 MtrunA17_Chr2g0334241 94.309 246 11 2 1 243 1 246 9.53e-166 457
Msa1133170 MtrunA17_Chr4g0063131 29.900 301 136 8 13 242 15 311 1.47e-38 136
Msa1133170 MtrunA17_Chr3g0124551 47.222 144 73 1 51 191 31 174 1.51e-36 131
Msa1133170 MtrunA17_Chr3g0124551 42.500 80 38 2 171 242 245 324 4.01e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133170 AT1G50440.3 69.444 252 66 3 1 243 1 250 1.64e-128 363
Msa1133170 AT1G50440.1 69.444 252 66 3 1 243 1 250 1.64e-128 363
Msa1133170 AT1G50440.2 69.444 252 66 3 1 243 1 250 1.64e-128 363
Msa1133170 AT1G50440.4 68.919 222 59 2 1 213 1 221 1.11e-112 322
Msa1133170 AT1G50440.5 58.294 211 76 3 1 202 1 208 1.93e-84 251
Msa1133170 AT1G11020.1 37.319 276 95 7 38 242 52 320 2.83e-46 157
Msa1133170 AT2G22120.1 43.421 152 79 2 24 172 7 154 1.04e-36 132
Msa1133170 AT2G22120.1 46.269 67 31 1 181 242 257 323 9.54e-11 61.2
Msa1133170 AT2G22120.2 43.421 152 79 2 24 172 7 154 1.24e-36 132
Msa1133170 AT2G22120.2 42.683 82 40 2 168 242 242 323 9.82e-11 61.2

Find 109 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTTGTTTAAGTTTC+CGG 0.107423 7_3:+86303177 Msa1133170:three_prime_UTR
TGCAGTTCTCGCCATTATTT+TGG 0.183622 7_3:+86302662 Msa1133170:intron
TTTGAAGCTAATTGCATTTC+GGG 0.211233 7_3:-86301887 None:intergenic
GATTTGATTTGATTGATTTC+AGG 0.231650 7_3:-86301644 None:intergenic
TAATTATAGATATCATTTAA+TGG 0.232203 7_3:-86303271 None:intergenic
TGCACAGGTTGTTGCTTTCT+TGG 0.234683 7_3:+86302409 Msa1133170:intron
TTCACAGAGGTGATTCAATA+TGG 0.242810 7_3:-86301948 None:intergenic
TCTATTATTAGATTGAAAAT+TGG 0.264290 7_3:+86301507 Msa1133170:five_prime_UTR
ATGATCTGTGGACATACTTT+TGG 0.267771 7_3:-86302120 None:intergenic
CTCAACCACCATCGATCTTT+AGG 0.272819 7_3:-86302232 None:intergenic
TGCCCTGCCCTGCCCTGCCC+TGG 0.279131 7_3:-86301698 None:intergenic
GTGCTTATTTATAAATTCTA+TGG 0.292569 7_3:+86302434 Msa1133170:CDS
CATATCCATAAAAGGATAAT+AGG 0.302313 7_3:-86303425 None:intergenic
GTTTGAAGCTAATTGCATTT+CGG 0.304724 7_3:-86301888 None:intergenic
AATAAGTCCATATCCATAAA+AGG 0.312092 7_3:-86303433 None:intergenic
ACTAGGTGGGGTATGCTAAA+TGG 0.312901 7_3:-86303347 None:intergenic
TTGTCAGACGTGGCAGAAAT+AGG 0.331431 7_3:-86301977 None:intergenic
TTGGGTACCTTTGCAATGGC+AGG 0.331526 7_3:-86302101 None:intergenic
GACCTTTGTCAATTCTTGTT+TGG 0.347635 7_3:-86302760 None:intergenic
ACAGATCATGTCTCGATAAC+TGG 0.347729 7_3:+86302134 Msa1133170:CDS
GCACAGGTTGTTGCTTTCTT+GGG 0.351526 7_3:+86302410 Msa1133170:intron
AGGGCAGGGCAGGGCAGGGC+AGG 0.358239 7_3:+86301700 Msa1133170:five_prime_UTR
CATCCAGGGCAGGGCAGGGC+AGG 0.359157 7_3:+86301695 Msa1133170:five_prime_UTR
CAAACAAAATTATTCTCAAT+TGG 0.362581 7_3:-86301562 None:intergenic
GAGAATGAATGAATGAATCT+AGG 0.364987 7_3:-86301622 None:intergenic
CATCGATCTTTAGGGACATT+TGG 0.365167 7_3:-86302223 None:intergenic
CCTTAGTTCTGTCACATGGC+TGG 0.365929 7_3:-86303117 None:intergenic
TATTTATAGCAATGCATAGA+AGG 0.375167 7_3:+86303452 Msa1133170:three_prime_UTR
TCAACCACCATCGATCTTTA+GGG 0.389036 7_3:-86302231 None:intergenic
TTCTTCTCTCATCATCATCC+AGG 0.397339 7_3:+86301680 Msa1133170:five_prime_UTR
CTTAGTTCTGTCACATGGCT+GGG 0.400790 7_3:-86303116 None:intergenic
TTTCTGAAGAAGAAGAATCT+TGG 0.402422 7_3:-86301919 None:intergenic
ATCATCATCCAGGGCAGGGC+AGG 0.405854 7_3:+86301690 Msa1133170:five_prime_UTR
GAGCAAACCCACCAAAATAA+TGG 0.405865 7_3:-86302673 None:intergenic
TTCTTTATAGCAATAATATG+TGG 0.428860 7_3:+86302702 Msa1133170:CDS
TGCCGGATATGCCTTGATCT+TGG 0.432553 7_3:+86302058 Msa1133170:CDS
GATGAACTTAGAGAAATGTT+TGG 0.432617 7_3:+86302458 Msa1133170:CDS
ACATGGCTGGGGTCGAGTTC+AGG 0.434273 7_3:-86303104 None:intergenic
CTCTCATCATCATCCAGGGC+AGG 0.438484 7_3:+86301685 Msa1133170:five_prime_UTR
GAAACTTAAACAAGAAAGAA+TGG 0.438656 7_3:-86303174 None:intergenic
AGGCAGACCAACGAAAATAT+AGG 0.448133 7_3:+86303243 Msa1133170:three_prime_UTR
GAGGTGATTCAATATGGGTT+GGG 0.457987 7_3:-86301942 None:intergenic
CTCCAAGATCAAGGCATATC+CGG 0.463345 7_3:-86302060 None:intergenic
GGGTACCTTTGCAATGGCAG+GGG 0.470794 7_3:-86302099 None:intergenic
ATTTCGGGAAATGTATAAGT+TGG 0.473093 7_3:-86301872 None:intergenic
TCACAGAGGTGATTCAATAT+GGG 0.474068 7_3:-86301947 None:intergenic
AATAGAGGGACGGACGTTGT+TGG 0.481033 7_3:-86301490 None:intergenic
TAGAAACATTCTAAAGAGAA+AGG 0.491026 7_3:+86303223 Msa1133170:three_prime_UTR
GTGACAGAACTAAGGATGTT+GGG 0.491109 7_3:+86303125 Msa1133170:CDS
GATGTTGGGCCTTTACTAGC+TGG 0.491352 7_3:+86303139 Msa1133170:exon
TGGGTACCTTTGCAATGGCA+GGG 0.492265 7_3:-86302100 None:intergenic
GAAAATGAATGCATGATCTC+TGG 0.494455 7_3:-86302278 None:intergenic
TTAGATTGAAAATTGGTAAG+TGG 0.497882 7_3:+86301514 Msa1133170:five_prime_UTR
TAGATTGAAAATTGGTAAGT+GGG 0.498358 7_3:+86301515 Msa1133170:five_prime_UTR
CGGATATGCCTTGATCTTGG+AGG 0.499840 7_3:+86302061 Msa1133170:CDS
AACATCTAAAAGTGGAAGAC+CGG 0.504781 7_3:-86303196 None:intergenic
AGAGGTGATTCAATATGGGT+TGG 0.514100 7_3:-86301943 None:intergenic
AAACTTAAACAAGAAAGAAT+GGG 0.516980 7_3:-86303173 None:intergenic
GTTATTTGATGAAGAAGCAT+GGG 0.518465 7_3:-86303538 None:intergenic
ATTCTCAATTGGACGACGGA+CGG 0.519804 7_3:-86301551 None:intergenic
AAATGATATCTATAATTAAG+TGG 0.521584 7_3:+86303276 Msa1133170:three_prime_UTR
AGAATGAATGAATGAATCTA+GGG 0.522862 7_3:-86301621 None:intergenic
CAAGGCATATCCGGCATTGT+GGG 0.523063 7_3:-86302051 None:intergenic
TGTGACAGAACTAAGGATGT+TGG 0.527888 7_3:+86303124 Msa1133170:CDS
AGTCTTCTCCTCCAAGATCA+AGG 0.530295 7_3:-86302069 None:intergenic
TCTAATTTAACATCTAAAAG+TGG 0.531101 7_3:-86303204 None:intergenic
GGGCAGGGCAGGGCAGGGCA+GGG 0.531187 7_3:+86301701 Msa1133170:five_prime_UTR
TCTTTATAGCAATAATATGT+GGG 0.533500 7_3:+86302703 Msa1133170:CDS
TTGGACGACGGACGGACGGA+CGG 0.534755 7_3:-86301543 None:intergenic
AGAAGAAGAATCTTGGTTGT+CGG 0.545346 7_3:-86301912 None:intergenic
TCTTCTCTCATCATCATCCA+GGG 0.546556 7_3:+86301681 Msa1133170:five_prime_UTR
AGTTATTTGATGAAGAAGCA+TGG 0.546705 7_3:-86303539 None:intergenic
TTAGTTCTGTCACATGGCTG+GGG 0.552531 7_3:-86303115 None:intergenic
ATGCTGATCACCCACAATGC+CGG 0.553024 7_3:+86302041 Msa1133170:CDS
TGTTTGTCCTAGTTACCCGA+GGG 0.554121 7_3:+86301444 Msa1133170:five_prime_UTR
GTTTGGCAAGAACATGGTAG+TGG 0.554746 7_3:-86302743 None:intergenic
CCAGCCATGTGACAGAACTA+AGG 0.558116 7_3:+86303117 Msa1133170:CDS
TCAAGGCATATCCGGCATTG+TGG 0.559551 7_3:-86302052 None:intergenic
GCCATTGTGTAAAATCCGTA+TGG 0.559880 7_3:-86302494 None:intergenic
ATACATATACCAGCTAGTAA+AGG 0.563392 7_3:-86303148 None:intergenic
GGTACCTTTGCAATGGCAGG+GGG 0.567201 7_3:-86302098 None:intergenic
AACTGGAGGTCTACCAAGGA+GGG 0.573090 7_3:+86302151 Msa1133170:CDS
AGAAGATCGAGAACATGTAA+AGG 0.577463 7_3:+86303076 Msa1133170:CDS
ATCCAGGGCAGGGCAGGGCA+GGG 0.580477 7_3:+86301696 Msa1133170:five_prime_UTR
GGTTATGAAGAACATCCATA+CGG 0.581353 7_3:+86302479 Msa1133170:CDS
ACGACGGACGGACGGACGGA+CGG 0.586605 7_3:-86301539 None:intergenic
GTGTTTGTCCTAGTTACCCG+AGG 0.592719 7_3:+86301443 Msa1133170:five_prime_UTR
TCAATTGGACGACGGACGGA+CGG 0.599620 7_3:-86301547 None:intergenic
TCTCATCATCATCCAGGGCA+GGG 0.601328 7_3:+86301686 Msa1133170:five_prime_UTR
ATTCTTGTTTGGCAAGAACA+TGG 0.604029 7_3:-86302749 None:intergenic
TCAATCTAATAATAGAGGGA+CGG 0.609175 7_3:-86301500 None:intergenic
TCATCATCCAGGGCAGGGCA+GGG 0.613522 7_3:+86301691 Msa1133170:five_prime_UTR
CGTTCGTTCGTAGACGAGAG+CGG 0.629782 7_3:-86301596 None:intergenic
CAAATGTCCCTAAAGATCGA+TGG 0.630129 7_3:+86302224 Msa1133170:CDS
ATTTAGCATACCCCACCTAG+TGG 0.635562 7_3:+86303349 Msa1133170:three_prime_UTR
ATGATGATGAGAGAAGAAAG+AGG 0.640375 7_3:-86301675 None:intergenic
ACATCCTTAGTTCTGTCACA+TGG 0.650556 7_3:-86303121 None:intergenic
CGATAACTGGAGGTCTACCA+AGG 0.652909 7_3:+86302147 Msa1133170:CDS
TGCCAAACAAGAATTGACAA+AGG 0.654420 7_3:+86302758 Msa1133170:CDS
AATTATTCTCAATTGGACGA+CGG 0.662987 7_3:-86301555 None:intergenic
AGTTATCGAGACATGATCTG+TGG 0.663655 7_3:-86302132 None:intergenic
TAACTGGAGGTCTACCAAGG+AGG 0.663726 7_3:+86302150 Msa1133170:CDS
TTTGTCCTAGTTACCCGAGG+GGG 0.666331 7_3:+86301446 Msa1133170:five_prime_UTR
TTATTTGATGAAGAAGCATG+GGG 0.678694 7_3:-86303537 None:intergenic
ATGTCCCTAAAGATCGATGG+TGG 0.685209 7_3:+86302227 Msa1133170:CDS
GATCATGTCTCGATAACTGG+AGG 0.685887 7_3:+86302137 Msa1133170:CDS
TATATCATGATTGTCAGACG+TGG 0.692189 7_3:-86301987 None:intergenic
GTTTGTCCTAGTTACCCGAG+GGG 0.723175 7_3:+86301445 Msa1133170:five_prime_UTR
AAATAGGAATAATTTCACAG+AGG 0.778628 7_3:-86301961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTTTTTTATAAAAATTTA+AGG + chr7_3:86303001-86303020 Msa1133170:intron 10.0%
!!! ACCTTAAATTTTTATAAAAA+AGG - chr7_3:86303005-86303024 None:intergenic 10.0%
!! TAATTATAGATATCATTTAA+TGG - chr7_3:86303274-86303293 None:intergenic 10.0%
!!! TCCTTTTTTATAAAAATTTA+AGG + chr7_3:86303001-86303020 Msa1133170:intron 10.0%
!!! ACCTTAAATTTTTATAAAAA+AGG - chr7_3:86303005-86303024 None:intergenic 10.0%
!! TAATTATAGATATCATTTAA+TGG - chr7_3:86303274-86303293 None:intergenic 10.0%
!!! ATTTTCAATCTAATAATAGA+GGG - chr7_3:86301507-86301526 None:intergenic 15.0%
!!! AATTTTCAATCTAATAATAG+AGG - chr7_3:86301508-86301527 None:intergenic 15.0%
!! TCTATTATTAGATTGAAAAT+TGG + chr7_3:86301507-86301526 Msa1133170:five_prime_UTR 15.0%
!! AAATGATATCTATAATTAAG+TGG + chr7_3:86303276-86303295 Msa1133170:three_prime_UTR 15.0%
!!! ATTTTCAATCTAATAATAGA+GGG - chr7_3:86301507-86301526 None:intergenic 15.0%
!!! AATTTTCAATCTAATAATAG+AGG - chr7_3:86301508-86301527 None:intergenic 15.0%
!! TCTATTATTAGATTGAAAAT+TGG + chr7_3:86301507-86301526 Msa1133170:five_prime_UTR 15.0%
!! AAATGATATCTATAATTAAG+TGG + chr7_3:86303276-86303295 Msa1133170:three_prime_UTR 15.0%
!! CAAACAAAATTATTCTCAAT+TGG - chr7_3:86301565-86301584 None:intergenic 20.0%
!!! GAATAATTTTGTTTGTCTAT+CGG + chr7_3:86301570-86301589 Msa1133170:five_prime_UTR 20.0%
!!! TTATCTATCTATTTCTTGTT+TGG + chr7_3:86301774-86301793 Msa1133170:intron 20.0%
!!! TATCTATCTATTTCTTGTTT+GGG + chr7_3:86301775-86301794 Msa1133170:intron 20.0%
!! ACATAAAATTATATTCGTAG+AGG - chr7_3:86302337-86302356 None:intergenic 20.0%
!! GTGCTTATTTATAAATTCTA+TGG + chr7_3:86302434-86302453 Msa1133170:CDS 20.0%
!! TTCTTTATAGCAATAATATG+TGG + chr7_3:86302702-86302721 Msa1133170:CDS 20.0%
!! TCTTTATAGCAATAATATGT+GGG + chr7_3:86302703-86302722 Msa1133170:CDS 20.0%
!! TAAACAATACAATACAAGAA+CGG - chr7_3:86302943-86302962 None:intergenic 20.0%
!! TTCTTGTATTGTATTGTTTA+AGG + chr7_3:86302943-86302962 Msa1133170:intron 20.0%
!! AAACTTAAACAAGAAAGAAT+GGG - chr7_3:86303176-86303195 None:intergenic 20.0%
!! TCTAATTTAACATCTAAAAG+TGG - chr7_3:86303207-86303226 None:intergenic 20.0%
!!! TATTCTTTTATGGTGAAATT+AGG - chr7_3:86303502-86303521 None:intergenic 20.0%
!! CAAACAAAATTATTCTCAAT+TGG - chr7_3:86301565-86301584 None:intergenic 20.0%
!!! GAATAATTTTGTTTGTCTAT+CGG + chr7_3:86301570-86301589 Msa1133170:five_prime_UTR 20.0%
!!! TTATCTATCTATTTCTTGTT+TGG + chr7_3:86301774-86301793 Msa1133170:intron 20.0%
!!! TATCTATCTATTTCTTGTTT+GGG + chr7_3:86301775-86301794 Msa1133170:intron 20.0%
!! ACATAAAATTATATTCGTAG+AGG - chr7_3:86302337-86302356 None:intergenic 20.0%
!! GTGCTTATTTATAAATTCTA+TGG + chr7_3:86302434-86302453 Msa1133170:CDS 20.0%
!! TTCTTTATAGCAATAATATG+TGG + chr7_3:86302702-86302721 Msa1133170:CDS 20.0%
!! TCTTTATAGCAATAATATGT+GGG + chr7_3:86302703-86302722 Msa1133170:CDS 20.0%
!! TAAACAATACAATACAAGAA+CGG - chr7_3:86302943-86302962 None:intergenic 20.0%
!! TTCTTGTATTGTATTGTTTA+AGG + chr7_3:86302943-86302962 Msa1133170:intron 20.0%
!! AAACTTAAACAAGAAAGAAT+GGG - chr7_3:86303176-86303195 None:intergenic 20.0%
!! TCTAATTTAACATCTAAAAG+TGG - chr7_3:86303207-86303226 None:intergenic 20.0%
!!! TATTCTTTTATGGTGAAATT+AGG - chr7_3:86303502-86303521 None:intergenic 20.0%
! TTAGATTGAAAATTGGTAAG+TGG + chr7_3:86301514-86301533 Msa1133170:five_prime_UTR 25.0%
! TAGATTGAAAATTGGTAAGT+GGG + chr7_3:86301515-86301534 Msa1133170:five_prime_UTR 25.0%
! AGAATGAATGAATGAATCTA+GGG - chr7_3:86301624-86301643 None:intergenic 25.0%
!!! GATTTGATTTGATTGATTTC+AGG - chr7_3:86301647-86301666 None:intergenic 25.0%
!! ATCTATCTATTTCTTGTTTG+GGG + chr7_3:86301776-86301795 Msa1133170:intron 25.0%
!! ATTCTTTTCTTTTCTTTTGC+AGG + chr7_3:86301821-86301840 Msa1133170:intron 25.0%
! AAATAGGAATAATTTCACAG+AGG - chr7_3:86301964-86301983 None:intergenic 25.0%
! AAAATTATATTCGTAGAGGA+TGG - chr7_3:86302333-86302352 None:intergenic 25.0%
! AAACAATACAATACAAGAAC+GGG - chr7_3:86302942-86302961 None:intergenic 25.0%
!! AATTGATTCTGAGTCATATA+AGG + chr7_3:86302971-86302990 Msa1133170:intron 25.0%
! GAAACTTAAACAAGAAAGAA+TGG - chr7_3:86303177-86303196 None:intergenic 25.0%
!! TTCTTTCTTGTTTAAGTTTC+CGG + chr7_3:86303177-86303196 Msa1133170:three_prime_UTR 25.0%
!! TAGAAACATTCTAAAGAGAA+AGG + chr7_3:86303223-86303242 Msa1133170:three_prime_UTR 25.0%
! CATATCCATAAAAGGATAAT+AGG - chr7_3:86303428-86303447 None:intergenic 25.0%
!! CTATTATCCTTTTATGGATA+TGG + chr7_3:86303426-86303445 Msa1133170:three_prime_UTR 25.0%
! AATAAGTCCATATCCATAAA+AGG - chr7_3:86303436-86303455 None:intergenic 25.0%
! TATTTATAGCAATGCATAGA+AGG + chr7_3:86303452-86303471 Msa1133170:three_prime_UTR 25.0%
! TTAGATTGAAAATTGGTAAG+TGG + chr7_3:86301514-86301533 Msa1133170:five_prime_UTR 25.0%
! TAGATTGAAAATTGGTAAGT+GGG + chr7_3:86301515-86301534 Msa1133170:five_prime_UTR 25.0%
! AGAATGAATGAATGAATCTA+GGG - chr7_3:86301624-86301643 None:intergenic 25.0%
!!! GATTTGATTTGATTGATTTC+AGG - chr7_3:86301647-86301666 None:intergenic 25.0%
!! ATCTATCTATTTCTTGTTTG+GGG + chr7_3:86301776-86301795 Msa1133170:intron 25.0%
!! ATTCTTTTCTTTTCTTTTGC+AGG + chr7_3:86301821-86301840 Msa1133170:intron 25.0%
! AAATAGGAATAATTTCACAG+AGG - chr7_3:86301964-86301983 None:intergenic 25.0%
! AAAATTATATTCGTAGAGGA+TGG - chr7_3:86302333-86302352 None:intergenic 25.0%
! AAACAATACAATACAAGAAC+GGG - chr7_3:86302942-86302961 None:intergenic 25.0%
!! AATTGATTCTGAGTCATATA+AGG + chr7_3:86302971-86302990 Msa1133170:intron 25.0%
! GAAACTTAAACAAGAAAGAA+TGG - chr7_3:86303177-86303196 None:intergenic 25.0%
!! TTCTTTCTTGTTTAAGTTTC+CGG + chr7_3:86303177-86303196 Msa1133170:three_prime_UTR 25.0%
!! TAGAAACATTCTAAAGAGAA+AGG + chr7_3:86303223-86303242 Msa1133170:three_prime_UTR 25.0%
! CATATCCATAAAAGGATAAT+AGG - chr7_3:86303428-86303447 None:intergenic 25.0%
!! CTATTATCCTTTTATGGATA+TGG + chr7_3:86303426-86303445 Msa1133170:three_prime_UTR 25.0%
! AATAAGTCCATATCCATAAA+AGG - chr7_3:86303436-86303455 None:intergenic 25.0%
! TATTTATAGCAATGCATAGA+AGG + chr7_3:86303452-86303471 Msa1133170:three_prime_UTR 25.0%
TCAATCTAATAATAGAGGGA+CGG - chr7_3:86301503-86301522 None:intergenic 30.0%
AATTATTCTCAATTGGACGA+CGG - chr7_3:86301558-86301577 None:intergenic 30.0%
GAGAATGAATGAATGAATCT+AGG - chr7_3:86301625-86301644 None:intergenic 30.0%
! TCTATCTATTTCTTGTTTGG+GGG + chr7_3:86301777-86301796 Msa1133170:intron 30.0%
ATTTCGGGAAATGTATAAGT+TGG - chr7_3:86301875-86301894 None:intergenic 30.0%
! TTTGAAGCTAATTGCATTTC+GGG - chr7_3:86301890-86301909 None:intergenic 30.0%
! GTTTGAAGCTAATTGCATTT+CGG - chr7_3:86301891-86301910 None:intergenic 30.0%
! TTTCTGAAGAAGAAGAATCT+TGG - chr7_3:86301922-86301941 None:intergenic 30.0%
TGTGCAATTAGAAAAGGAAA+AGG - chr7_3:86302395-86302414 None:intergenic 30.0%
! TTTTCCTTTTCTAATTGCAC+AGG + chr7_3:86302394-86302413 Msa1133170:intron 30.0%
GATGAACTTAGAGAAATGTT+TGG + chr7_3:86302458-86302477 Msa1133170:CDS 30.0%
TTTGAGAGTGGTGAATAAAT+GGG - chr7_3:86302527-86302546 None:intergenic 30.0%
ATTTGAGAGTGGTGAATAAA+TGG - chr7_3:86302528-86302547 None:intergenic 30.0%
AAAAGCTGCAAACAAACATT+GGG - chr7_3:86302556-86302575 None:intergenic 30.0%
AACCAACTTATTACATGCAA+TGG + chr7_3:86302615-86302634 Msa1133170:intron 30.0%
TTCCATTGCATGTAATAAGT+TGG - chr7_3:86302620-86302639 None:intergenic 30.0%
!! TAACATGCTTCACTTTTATG+TGG - chr7_3:86302838-86302857 None:intergenic 30.0%
GGTCATAAGATATGCAATTT+CGG + chr7_3:86302897-86302916 Msa1133170:intron 30.0%
GTCATAAGATATGCAATTTC+GGG + chr7_3:86302898-86302917 Msa1133170:intron 30.0%
ATACATATACCAGCTAGTAA+AGG - chr7_3:86303151-86303170 None:intergenic 30.0%
! GTGTACCTATTATCCTTTTA+TGG + chr7_3:86303420-86303439 Msa1133170:three_prime_UTR 30.0%
! GACAACTGCATATTCTTTTA+TGG - chr7_3:86303512-86303531 None:intergenic 30.0%
TCAATCTAATAATAGAGGGA+CGG - chr7_3:86301503-86301522 None:intergenic 30.0%
AATTATTCTCAATTGGACGA+CGG - chr7_3:86301558-86301577 None:intergenic 30.0%
GAGAATGAATGAATGAATCT+AGG - chr7_3:86301625-86301644 None:intergenic 30.0%
! TCTATCTATTTCTTGTTTGG+GGG + chr7_3:86301777-86301796 Msa1133170:intron 30.0%
ATTTCGGGAAATGTATAAGT+TGG - chr7_3:86301875-86301894 None:intergenic 30.0%
! TTTGAAGCTAATTGCATTTC+GGG - chr7_3:86301890-86301909 None:intergenic 30.0%
! GTTTGAAGCTAATTGCATTT+CGG - chr7_3:86301891-86301910 None:intergenic 30.0%
! TTTCTGAAGAAGAAGAATCT+TGG - chr7_3:86301922-86301941 None:intergenic 30.0%
TGTGCAATTAGAAAAGGAAA+AGG - chr7_3:86302395-86302414 None:intergenic 30.0%
! TTTTCCTTTTCTAATTGCAC+AGG + chr7_3:86302394-86302413 Msa1133170:intron 30.0%
GATGAACTTAGAGAAATGTT+TGG + chr7_3:86302458-86302477 Msa1133170:CDS 30.0%
TTTGAGAGTGGTGAATAAAT+GGG - chr7_3:86302527-86302546 None:intergenic 30.0%
ATTTGAGAGTGGTGAATAAA+TGG - chr7_3:86302528-86302547 None:intergenic 30.0%
AAAAGCTGCAAACAAACATT+GGG - chr7_3:86302556-86302575 None:intergenic 30.0%
AACCAACTTATTACATGCAA+TGG + chr7_3:86302615-86302634 Msa1133170:intron 30.0%
TTCCATTGCATGTAATAAGT+TGG - chr7_3:86302620-86302639 None:intergenic 30.0%
!! TAACATGCTTCACTTTTATG+TGG - chr7_3:86302838-86302857 None:intergenic 30.0%
GGTCATAAGATATGCAATTT+CGG + chr7_3:86302897-86302916 Msa1133170:intron 30.0%
GTCATAAGATATGCAATTTC+GGG + chr7_3:86302898-86302917 Msa1133170:intron 30.0%
ATACATATACCAGCTAGTAA+AGG - chr7_3:86303151-86303170 None:intergenic 30.0%
! GTGTACCTATTATCCTTTTA+TGG + chr7_3:86303420-86303439 Msa1133170:three_prime_UTR 30.0%
! GACAACTGCATATTCTTTTA+TGG - chr7_3:86303512-86303531 None:intergenic 30.0%
! ATGATGATGAGAGAAGAAAG+AGG - chr7_3:86301678-86301697 None:intergenic 35.0%
AGAAGAAGAATCTTGGTTGT+CGG - chr7_3:86301915-86301934 None:intergenic 35.0%
TCACAGAGGTGATTCAATAT+GGG - chr7_3:86301950-86301969 None:intergenic 35.0%
TTCACAGAGGTGATTCAATA+TGG - chr7_3:86301951-86301970 None:intergenic 35.0%
TATATCATGATTGTCAGACG+TGG - chr7_3:86301990-86302009 None:intergenic 35.0%
! TGATCTGTGGACATACTTTT+GGG - chr7_3:86302122-86302141 None:intergenic 35.0%
! ATGATCTGTGGACATACTTT+TGG - chr7_3:86302123-86302142 None:intergenic 35.0%
GAAAATGAATGCATGATCTC+TGG - chr7_3:86302281-86302300 None:intergenic 35.0%
ACAACCTGTGCAATTAGAAA+AGG - chr7_3:86302401-86302420 None:intergenic 35.0%
GGTTATGAAGAACATCCATA+CGG + chr7_3:86302479-86302498 Msa1133170:CDS 35.0%
! TCCATACGGATTTTACACAA+TGG + chr7_3:86302493-86302512 Msa1133170:CDS 35.0%
GAAAAGCTGCAAACAAACAT+TGG - chr7_3:86302557-86302576 None:intergenic 35.0%
ACGAAAAAGTCAGAAATGAG+TGG - chr7_3:86302579-86302598 None:intergenic 35.0%
! ATTCTTGTTTGGCAAGAACA+TGG - chr7_3:86302752-86302771 None:intergenic 35.0%
TGCCAAACAAGAATTGACAA+AGG + chr7_3:86302758-86302777 Msa1133170:CDS 35.0%
GACCTTTGTCAATTCTTGTT+TGG - chr7_3:86302763-86302782 None:intergenic 35.0%
!! TGCTTCACTTTTATGTGGAT+TGG - chr7_3:86302833-86302852 None:intergenic 35.0%
!!! CTGTTTACTTTTTTGACGTC+AGG + chr7_3:86303043-86303062 Msa1133170:intron 35.0%
AGAAGATCGAGAACATGTAA+AGG + chr7_3:86303076-86303095 Msa1133170:CDS 35.0%
AACATCTAAAAGTGGAAGAC+CGG - chr7_3:86303199-86303218 None:intergenic 35.0%
! GGTTTTGCCTATATTTTCGT+TGG - chr7_3:86303253-86303272 None:intergenic 35.0%
! AAATCTTTTTCCACTAGGTG+GGG - chr7_3:86303362-86303381 None:intergenic 35.0%
! CAAATCTTTTTCCACTAGGT+GGG - chr7_3:86303363-86303382 None:intergenic 35.0%
! CAACCAAATCTTTTTCCACT+AGG - chr7_3:86303367-86303386 None:intergenic 35.0%
! CTAGTGGAAAAAGATTTGGT+TGG + chr7_3:86303365-86303384 Msa1133170:three_prime_UTR 35.0%
! ATGATGATGAGAGAAGAAAG+AGG - chr7_3:86301678-86301697 None:intergenic 35.0%
AGAAGAAGAATCTTGGTTGT+CGG - chr7_3:86301915-86301934 None:intergenic 35.0%
TCACAGAGGTGATTCAATAT+GGG - chr7_3:86301950-86301969 None:intergenic 35.0%
TTCACAGAGGTGATTCAATA+TGG - chr7_3:86301951-86301970 None:intergenic 35.0%
TATATCATGATTGTCAGACG+TGG - chr7_3:86301990-86302009 None:intergenic 35.0%
! TGATCTGTGGACATACTTTT+GGG - chr7_3:86302122-86302141 None:intergenic 35.0%
! ATGATCTGTGGACATACTTT+TGG - chr7_3:86302123-86302142 None:intergenic 35.0%
GAAAATGAATGCATGATCTC+TGG - chr7_3:86302281-86302300 None:intergenic 35.0%
ACAACCTGTGCAATTAGAAA+AGG - chr7_3:86302401-86302420 None:intergenic 35.0%
GGTTATGAAGAACATCCATA+CGG + chr7_3:86302479-86302498 Msa1133170:CDS 35.0%
! TCCATACGGATTTTACACAA+TGG + chr7_3:86302493-86302512 Msa1133170:CDS 35.0%
GAAAAGCTGCAAACAAACAT+TGG - chr7_3:86302557-86302576 None:intergenic 35.0%
ACGAAAAAGTCAGAAATGAG+TGG - chr7_3:86302579-86302598 None:intergenic 35.0%
! ATTCTTGTTTGGCAAGAACA+TGG - chr7_3:86302752-86302771 None:intergenic 35.0%
TGCCAAACAAGAATTGACAA+AGG + chr7_3:86302758-86302777 Msa1133170:CDS 35.0%
GACCTTTGTCAATTCTTGTT+TGG - chr7_3:86302763-86302782 None:intergenic 35.0%
!! TGCTTCACTTTTATGTGGAT+TGG - chr7_3:86302833-86302852 None:intergenic 35.0%
!!! CTGTTTACTTTTTTGACGTC+AGG + chr7_3:86303043-86303062 Msa1133170:intron 35.0%
AGAAGATCGAGAACATGTAA+AGG + chr7_3:86303076-86303095 Msa1133170:CDS 35.0%
AACATCTAAAAGTGGAAGAC+CGG - chr7_3:86303199-86303218 None:intergenic 35.0%
! GGTTTTGCCTATATTTTCGT+TGG - chr7_3:86303253-86303272 None:intergenic 35.0%
! AAATCTTTTTCCACTAGGTG+GGG - chr7_3:86303362-86303381 None:intergenic 35.0%
! CAAATCTTTTTCCACTAGGT+GGG - chr7_3:86303363-86303382 None:intergenic 35.0%
! CAACCAAATCTTTTTCCACT+AGG - chr7_3:86303367-86303386 None:intergenic 35.0%
! CTAGTGGAAAAAGATTTGGT+TGG + chr7_3:86303365-86303384 Msa1133170:three_prime_UTR 35.0%
TTCTTCTCTCATCATCATCC+AGG + chr7_3:86301680-86301699 Msa1133170:five_prime_UTR 40.0%
TCTTCTCTCATCATCATCCA+GGG + chr7_3:86301681-86301700 Msa1133170:five_prime_UTR 40.0%
TGCATAGCAGCATCATATGA+TGG + chr7_3:86301750-86301769 Msa1133170:intron 40.0%
! CTATTTCTTGTTTGGGGGTT+TGG + chr7_3:86301782-86301801 Msa1133170:intron 40.0%
GAGGTGATTCAATATGGGTT+GGG - chr7_3:86301945-86301964 None:intergenic 40.0%
AGAGGTGATTCAATATGGGT+TGG - chr7_3:86301946-86301965 None:intergenic 40.0%
!! ACTTTTGGGTACCTTTGCAA+TGG - chr7_3:86302108-86302127 None:intergenic 40.0%
AGTTATCGAGACATGATCTG+TGG - chr7_3:86302135-86302154 None:intergenic 40.0%
ACAGATCATGTCTCGATAAC+TGG + chr7_3:86302134-86302153 Msa1133170:CDS 40.0%
! CATCGATCTTTAGGGACATT+TGG - chr7_3:86302226-86302245 None:intergenic 40.0%
CAAATGTCCCTAAAGATCGA+TGG + chr7_3:86302224-86302243 Msa1133170:CDS 40.0%
TCAACCACCATCGATCTTTA+GGG - chr7_3:86302234-86302253 None:intergenic 40.0%
GCCATTGTGTAAAATCCGTA+TGG - chr7_3:86302497-86302516 None:intergenic 40.0%
! TACGGATTTTACACAATGGC+TGG + chr7_3:86302497-86302516 Msa1133170:CDS 40.0%
ATTGGGCATGAATTTGAGAG+TGG - chr7_3:86302539-86302558 None:intergenic 40.0%
! TGCAGTTCTCGCCATTATTT+TGG + chr7_3:86302662-86302681 Msa1133170:intron 40.0%
!!! AGTTCTCGCCATTATTTTGG+TGG + chr7_3:86302665-86302684 Msa1133170:intron 40.0%
!!! GTTCTCGCCATTATTTTGGT+GGG + chr7_3:86302666-86302685 Msa1133170:intron 40.0%
GAGCAAACCCACCAAAATAA+TGG - chr7_3:86302676-86302695 None:intergenic 40.0%
!!! ATTTTGGTGGGTTTGCTCTA+TGG + chr7_3:86302678-86302697 Msa1133170:CDS 40.0%
!! TTTTTGACGTCAGGAGTATG+TGG + chr7_3:86303052-86303071 Msa1133170:intron 40.0%
!! ACATCCTTAGTTCTGTCACA+TGG - chr7_3:86303124-86303143 None:intergenic 40.0%
TGTGACAGAACTAAGGATGT+TGG + chr7_3:86303124-86303143 Msa1133170:CDS 40.0%
GTGACAGAACTAAGGATGTT+GGG + chr7_3:86303125-86303144 Msa1133170:CDS 40.0%
AGGCAGACCAACGAAAATAT+AGG + chr7_3:86303243-86303262 Msa1133170:three_prime_UTR 40.0%
! CCAAATCTTTTTCCACTAGG+TGG - chr7_3:86303364-86303383 None:intergenic 40.0%
CCACCTAGTGGAAAAAGATT+TGG + chr7_3:86303361-86303380 Msa1133170:three_prime_UTR 40.0%
TTCTTCTCTCATCATCATCC+AGG + chr7_3:86301680-86301699 Msa1133170:five_prime_UTR 40.0%
TCTTCTCTCATCATCATCCA+GGG + chr7_3:86301681-86301700 Msa1133170:five_prime_UTR 40.0%
TGCATAGCAGCATCATATGA+TGG + chr7_3:86301750-86301769 Msa1133170:intron 40.0%
! CTATTTCTTGTTTGGGGGTT+TGG + chr7_3:86301782-86301801 Msa1133170:intron 40.0%
GAGGTGATTCAATATGGGTT+GGG - chr7_3:86301945-86301964 None:intergenic 40.0%
AGAGGTGATTCAATATGGGT+TGG - chr7_3:86301946-86301965 None:intergenic 40.0%
!! ACTTTTGGGTACCTTTGCAA+TGG - chr7_3:86302108-86302127 None:intergenic 40.0%
AGTTATCGAGACATGATCTG+TGG - chr7_3:86302135-86302154 None:intergenic 40.0%
ACAGATCATGTCTCGATAAC+TGG + chr7_3:86302134-86302153 Msa1133170:CDS 40.0%
! CATCGATCTTTAGGGACATT+TGG - chr7_3:86302226-86302245 None:intergenic 40.0%
CAAATGTCCCTAAAGATCGA+TGG + chr7_3:86302224-86302243 Msa1133170:CDS 40.0%
TCAACCACCATCGATCTTTA+GGG - chr7_3:86302234-86302253 None:intergenic 40.0%
GCCATTGTGTAAAATCCGTA+TGG - chr7_3:86302497-86302516 None:intergenic 40.0%
! TACGGATTTTACACAATGGC+TGG + chr7_3:86302497-86302516 Msa1133170:CDS 40.0%
ATTGGGCATGAATTTGAGAG+TGG - chr7_3:86302539-86302558 None:intergenic 40.0%
! TGCAGTTCTCGCCATTATTT+TGG + chr7_3:86302662-86302681 Msa1133170:intron 40.0%
!!! AGTTCTCGCCATTATTTTGG+TGG + chr7_3:86302665-86302684 Msa1133170:intron 40.0%
!!! GTTCTCGCCATTATTTTGGT+GGG + chr7_3:86302666-86302685 Msa1133170:intron 40.0%
GAGCAAACCCACCAAAATAA+TGG - chr7_3:86302676-86302695 None:intergenic 40.0%
!!! ATTTTGGTGGGTTTGCTCTA+TGG + chr7_3:86302678-86302697 Msa1133170:CDS 40.0%
!! TTTTTGACGTCAGGAGTATG+TGG + chr7_3:86303052-86303071 Msa1133170:intron 40.0%
!! ACATCCTTAGTTCTGTCACA+TGG - chr7_3:86303124-86303143 None:intergenic 40.0%
TGTGACAGAACTAAGGATGT+TGG + chr7_3:86303124-86303143 Msa1133170:CDS 40.0%
GTGACAGAACTAAGGATGTT+GGG + chr7_3:86303125-86303144 Msa1133170:CDS 40.0%
AGGCAGACCAACGAAAATAT+AGG + chr7_3:86303243-86303262 Msa1133170:three_prime_UTR 40.0%
! CCAAATCTTTTTCCACTAGG+TGG - chr7_3:86303364-86303383 None:intergenic 40.0%
CCACCTAGTGGAAAAAGATT+TGG + chr7_3:86303361-86303380 Msa1133170:three_prime_UTR 40.0%
TGTTTGTCCTAGTTACCCGA+GGG + chr7_3:86301444-86301463 Msa1133170:five_prime_UTR 45.0%
ATTCTCAATTGGACGACGGA+CGG - chr7_3:86301554-86301573 None:intergenic 45.0%
TTGTCAGACGTGGCAGAAAT+AGG - chr7_3:86301980-86301999 None:intergenic 45.0%
CTCCAAGATCAAGGCATATC+CGG - chr7_3:86302063-86302082 None:intergenic 45.0%
AGTCTTCTCCTCCAAGATCA+AGG - chr7_3:86302072-86302091 None:intergenic 45.0%
GATCATGTCTCGATAACTGG+AGG + chr7_3:86302137-86302156 Msa1133170:CDS 45.0%
AGAAAAAGCAAAGCCCTCCT+TGG - chr7_3:86302167-86302186 None:intergenic 45.0%
ATGTCCCTAAAGATCGATGG+TGG + chr7_3:86302227-86302246 Msa1133170:CDS 45.0%
CTCAACCACCATCGATCTTT+AGG - chr7_3:86302235-86302254 None:intergenic 45.0%
!! TGCACAGGTTGTTGCTTTCT+TGG + chr7_3:86302409-86302428 Msa1133170:intron 45.0%
!! GCACAGGTTGTTGCTTTCTT+GGG + chr7_3:86302410-86302429 Msa1133170:intron 45.0%
GTTTGGCAAGAACATGGTAG+TGG - chr7_3:86302746-86302765 None:intergenic 45.0%
CTTGCTGCAAAACACGTCTT+TGG + chr7_3:86302876-86302895 Msa1133170:intron 45.0%
!! TTAGTTCTGTCACATGGCTG+GGG - chr7_3:86303118-86303137 None:intergenic 45.0%
!! CTTAGTTCTGTCACATGGCT+GGG - chr7_3:86303119-86303138 None:intergenic 45.0%
ACTAGGTGGGGTATGCTAAA+TGG - chr7_3:86303350-86303369 None:intergenic 45.0%
ATTTAGCATACCCCACCTAG+TGG + chr7_3:86303349-86303368 Msa1133170:three_prime_UTR 45.0%
TGTTTGTCCTAGTTACCCGA+GGG + chr7_3:86301444-86301463 Msa1133170:five_prime_UTR 45.0%
ATTCTCAATTGGACGACGGA+CGG - chr7_3:86301554-86301573 None:intergenic 45.0%
TTGTCAGACGTGGCAGAAAT+AGG - chr7_3:86301980-86301999 None:intergenic 45.0%
CTCCAAGATCAAGGCATATC+CGG - chr7_3:86302063-86302082 None:intergenic 45.0%
AGTCTTCTCCTCCAAGATCA+AGG - chr7_3:86302072-86302091 None:intergenic 45.0%
GATCATGTCTCGATAACTGG+AGG + chr7_3:86302137-86302156 Msa1133170:CDS 45.0%
AGAAAAAGCAAAGCCCTCCT+TGG - chr7_3:86302167-86302186 None:intergenic 45.0%
ATGTCCCTAAAGATCGATGG+TGG + chr7_3:86302227-86302246 Msa1133170:CDS 45.0%
CTCAACCACCATCGATCTTT+AGG - chr7_3:86302235-86302254 None:intergenic 45.0%
!! TGCACAGGTTGTTGCTTTCT+TGG + chr7_3:86302409-86302428 Msa1133170:intron 45.0%
!! GCACAGGTTGTTGCTTTCTT+GGG + chr7_3:86302410-86302429 Msa1133170:intron 45.0%
GTTTGGCAAGAACATGGTAG+TGG - chr7_3:86302746-86302765 None:intergenic 45.0%
CTTGCTGCAAAACACGTCTT+TGG + chr7_3:86302876-86302895 Msa1133170:intron 45.0%
!! TTAGTTCTGTCACATGGCTG+GGG - chr7_3:86303118-86303137 None:intergenic 45.0%
!! CTTAGTTCTGTCACATGGCT+GGG - chr7_3:86303119-86303138 None:intergenic 45.0%
ACTAGGTGGGGTATGCTAAA+TGG - chr7_3:86303350-86303369 None:intergenic 45.0%
ATTTAGCATACCCCACCTAG+TGG + chr7_3:86303349-86303368 Msa1133170:three_prime_UTR 45.0%
GTGTTTGTCCTAGTTACCCG+AGG + chr7_3:86301443-86301462 Msa1133170:five_prime_UTR 50.0%
GTTTGTCCTAGTTACCCGAG+GGG + chr7_3:86301445-86301464 Msa1133170:five_prime_UTR 50.0%
TTTGTCCTAGTTACCCGAGG+GGG + chr7_3:86301446-86301465 Msa1133170:five_prime_UTR 50.0%
AATAGAGGGACGGACGTTGT+TGG - chr7_3:86301493-86301512 None:intergenic 50.0%
TCTCATCATCATCCAGGGCA+GGG + chr7_3:86301686-86301705 Msa1133170:five_prime_UTR 50.0%
ATGCTGATCACCCACAATGC+CGG + chr7_3:86302041-86302060 Msa1133170:CDS 50.0%
CAAGGCATATCCGGCATTGT+GGG - chr7_3:86302054-86302073 None:intergenic 50.0%
TCAAGGCATATCCGGCATTG+TGG - chr7_3:86302055-86302074 None:intergenic 50.0%
TGCCGGATATGCCTTGATCT+TGG + chr7_3:86302058-86302077 Msa1133170:CDS 50.0%
CGGATATGCCTTGATCTTGG+AGG + chr7_3:86302061-86302080 Msa1133170:CDS 50.0%
TGGGTACCTTTGCAATGGCA+GGG - chr7_3:86302103-86302122 None:intergenic 50.0%
TTGGGTACCTTTGCAATGGC+AGG - chr7_3:86302104-86302123 None:intergenic 50.0%
CGATAACTGGAGGTCTACCA+AGG + chr7_3:86302147-86302166 Msa1133170:CDS 50.0%
TAACTGGAGGTCTACCAAGG+AGG + chr7_3:86302150-86302169 Msa1133170:CDS 50.0%
AACTGGAGGTCTACCAAGGA+GGG + chr7_3:86302151-86302170 Msa1133170:CDS 50.0%
!! CCTTAGTTCTGTCACATGGC+TGG - chr7_3:86303120-86303139 None:intergenic 50.0%
CCAGCCATGTGACAGAACTA+AGG + chr7_3:86303117-86303136 Msa1133170:CDS 50.0%
GATGTTGGGCCTTTACTAGC+TGG + chr7_3:86303139-86303158 Msa1133170:exon 50.0%
GTGTTTGTCCTAGTTACCCG+AGG + chr7_3:86301443-86301462 Msa1133170:five_prime_UTR 50.0%
GTTTGTCCTAGTTACCCGAG+GGG + chr7_3:86301445-86301464 Msa1133170:five_prime_UTR 50.0%
TTTGTCCTAGTTACCCGAGG+GGG + chr7_3:86301446-86301465 Msa1133170:five_prime_UTR 50.0%
AATAGAGGGACGGACGTTGT+TGG - chr7_3:86301493-86301512 None:intergenic 50.0%
TCTCATCATCATCCAGGGCA+GGG + chr7_3:86301686-86301705 Msa1133170:five_prime_UTR 50.0%
ATGCTGATCACCCACAATGC+CGG + chr7_3:86302041-86302060 Msa1133170:CDS 50.0%
CAAGGCATATCCGGCATTGT+GGG - chr7_3:86302054-86302073 None:intergenic 50.0%
TCAAGGCATATCCGGCATTG+TGG - chr7_3:86302055-86302074 None:intergenic 50.0%
TGCCGGATATGCCTTGATCT+TGG + chr7_3:86302058-86302077 Msa1133170:CDS 50.0%
CGGATATGCCTTGATCTTGG+AGG + chr7_3:86302061-86302080 Msa1133170:CDS 50.0%
TGGGTACCTTTGCAATGGCA+GGG - chr7_3:86302103-86302122 None:intergenic 50.0%
TTGGGTACCTTTGCAATGGC+AGG - chr7_3:86302104-86302123 None:intergenic 50.0%
CGATAACTGGAGGTCTACCA+AGG + chr7_3:86302147-86302166 Msa1133170:CDS 50.0%
TAACTGGAGGTCTACCAAGG+AGG + chr7_3:86302150-86302169 Msa1133170:CDS 50.0%
AACTGGAGGTCTACCAAGGA+GGG + chr7_3:86302151-86302170 Msa1133170:CDS 50.0%
!! CCTTAGTTCTGTCACATGGC+TGG - chr7_3:86303120-86303139 None:intergenic 50.0%
CCAGCCATGTGACAGAACTA+AGG + chr7_3:86303117-86303136 Msa1133170:CDS 50.0%
GATGTTGGGCCTTTACTAGC+TGG + chr7_3:86303139-86303158 Msa1133170:exon 50.0%
TCAATTGGACGACGGACGGA+CGG - chr7_3:86301550-86301569 None:intergenic 55.0%
CGTTCGTTCGTAGACGAGAG+CGG - chr7_3:86301599-86301618 None:intergenic 55.0%
CTCTCATCATCATCCAGGGC+AGG + chr7_3:86301685-86301704 Msa1133170:five_prime_UTR 55.0%
ATTGCCCCCTGCCATTGCAA+AGG + chr7_3:86302094-86302113 Msa1133170:CDS 55.0%
GGTACCTTTGCAATGGCAGG+GGG - chr7_3:86302101-86302120 None:intergenic 55.0%
GGGTACCTTTGCAATGGCAG+GGG - chr7_3:86302102-86302121 None:intergenic 55.0%
TCAATTGGACGACGGACGGA+CGG - chr7_3:86301550-86301569 None:intergenic 55.0%
CGTTCGTTCGTAGACGAGAG+CGG - chr7_3:86301599-86301618 None:intergenic 55.0%
CTCTCATCATCATCCAGGGC+AGG + chr7_3:86301685-86301704 Msa1133170:five_prime_UTR 55.0%
ATTGCCCCCTGCCATTGCAA+AGG + chr7_3:86302094-86302113 Msa1133170:CDS 55.0%
GGTACCTTTGCAATGGCAGG+GGG - chr7_3:86302101-86302120 None:intergenic 55.0%
GGGTACCTTTGCAATGGCAG+GGG - chr7_3:86302102-86302121 None:intergenic 55.0%
TCACTCCCCCTCGGGTAACT+AGG - chr7_3:86301454-86301473 None:intergenic 60.0%
ACCACACATCACTCCCCCTC+GGG - chr7_3:86301462-86301481 None:intergenic 60.0%
CACCACACATCACTCCCCCT+CGG - chr7_3:86301463-86301482 None:intergenic 60.0%
ATCATCATCCAGGGCAGGGC+AGG + chr7_3:86301690-86301709 Msa1133170:five_prime_UTR 60.0%
TCATCATCCAGGGCAGGGCA+GGG + chr7_3:86301691-86301710 Msa1133170:five_prime_UTR 60.0%
ACATGGCTGGGGTCGAGTTC+AGG - chr7_3:86303107-86303126 None:intergenic 60.0%
TCACTCCCCCTCGGGTAACT+AGG - chr7_3:86301454-86301473 None:intergenic 60.0%
ACCACACATCACTCCCCCTC+GGG - chr7_3:86301462-86301481 None:intergenic 60.0%
CACCACACATCACTCCCCCT+CGG - chr7_3:86301463-86301482 None:intergenic 60.0%
ATCATCATCCAGGGCAGGGC+AGG + chr7_3:86301690-86301709 Msa1133170:five_prime_UTR 60.0%
TCATCATCCAGGGCAGGGCA+GGG + chr7_3:86301691-86301710 Msa1133170:five_prime_UTR 60.0%
ACATGGCTGGGGTCGAGTTC+AGG - chr7_3:86303107-86303126 None:intergenic 60.0%
ACCCGAGGGGGAGTGATGTG+TGG + chr7_3:86301458-86301477 Msa1133170:five_prime_UTR 65.0%
CGAGGGGGAGTGATGTGTGG+TGG + chr7_3:86301461-86301480 Msa1133170:five_prime_UTR 65.0%
TTGGACGACGGACGGACGGA+CGG - chr7_3:86301546-86301565 None:intergenic 65.0%
ACCCGAGGGGGAGTGATGTG+TGG + chr7_3:86301458-86301477 Msa1133170:five_prime_UTR 65.0%
CGAGGGGGAGTGATGTGTGG+TGG + chr7_3:86301461-86301480 Msa1133170:five_prime_UTR 65.0%
TTGGACGACGGACGGACGGA+CGG - chr7_3:86301546-86301565 None:intergenic 65.0%
ACGACGGACGGACGGACGGA+CGG - chr7_3:86301542-86301561 None:intergenic 70.0%
ATCCAGGGCAGGGCAGGGCA+GGG + chr7_3:86301696-86301715 Msa1133170:five_prime_UTR 70.0%
ACGACGGACGGACGGACGGA+CGG - chr7_3:86301542-86301561 None:intergenic 70.0%
ATCCAGGGCAGGGCAGGGCA+GGG + chr7_3:86301696-86301715 Msa1133170:five_prime_UTR 70.0%
CATCCAGGGCAGGGCAGGGC+AGG + chr7_3:86301695-86301714 Msa1133170:five_prime_UTR 75.0%
CATCCAGGGCAGGGCAGGGC+AGG + chr7_3:86301695-86301714 Msa1133170:five_prime_UTR 75.0%
! TGCCCTGCCCTGCCCTGCCC+TGG - chr7_3:86301701-86301720 None:intergenic 80.0%
! AGGGCAGGGCAGGGCAGGGC+AGG + chr7_3:86301700-86301719 Msa1133170:five_prime_UTR 80.0%
! GGGCAGGGCAGGGCAGGGCA+GGG + chr7_3:86301701-86301720 Msa1133170:five_prime_UTR 80.0%
! AGGGCAGGGCAGGGCAGGGC+AGG + chr7_3:86301700-86301719 Msa1133170:five_prime_UTR 80.0%
! GGGCAGGGCAGGGCAGGGCA+GGG + chr7_3:86301701-86301720 Msa1133170:five_prime_UTR 80.0%
! AGGGCAGGGCAGGGCAGGGC+AGG + chr7_3:86301700-86301719 Msa1133170:five_prime_UTR 80.0%
! TGCCCTGCCCTGCCCTGCCC+TGG - chr7_3:86301701-86301720 None:intergenic 80.0%
! AGGGCAGGGCAGGGCAGGGC+AGG + chr7_3:86301700-86301719 Msa1133170:five_prime_UTR 80.0%
! GGGCAGGGCAGGGCAGGGCA+GGG + chr7_3:86301701-86301720 Msa1133170:five_prime_UTR 80.0%
! AGGGCAGGGCAGGGCAGGGC+AGG + chr7_3:86301700-86301719 Msa1133170:five_prime_UTR 80.0%
! GGGCAGGGCAGGGCAGGGCA+GGG + chr7_3:86301701-86301720 Msa1133170:five_prime_UTR 80.0%
! AGGGCAGGGCAGGGCAGGGC+AGG + chr7_3:86301700-86301719 Msa1133170:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 86301431 86303552 86301431 ID=Msa1133170;Name=Msa1133170
chr7_3 mRNA 86301431 86303552 86301431 ID=Msa1133170-mRNA-1;Parent=Msa1133170;Name=Msa1133170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=341|1|1|1|0.75|0.6|5|395|243
chr7_3 exon 86301431 86301721 86301431 ID=Msa1133170-mRNA-1:exon:25927;Parent=Msa1133170-mRNA-1
chr7_3 exon 86301843 86302315 86301843 ID=Msa1133170-mRNA-1:exon:25928;Parent=Msa1133170-mRNA-1
chr7_3 exon 86302416 86302518 86302416 ID=Msa1133170-mRNA-1:exon:25929;Parent=Msa1133170-mRNA-1
chr7_3 exon 86302667 86302779 86302667 ID=Msa1133170-mRNA-1:exon:25930;Parent=Msa1133170-mRNA-1
chr7_3 exon 86303065 86303552 86303065 ID=Msa1133170-mRNA-1:exon:25931;Parent=Msa1133170-mRNA-1
chr7_3 five_prime_UTR 86301431 86301721 86301431 ID=Msa1133170-mRNA-1:five_prime_utr;Parent=Msa1133170-mRNA-1
chr7_3 five_prime_UTR 86301843 86301892 86301843 ID=Msa1133170-mRNA-1:five_prime_utr;Parent=Msa1133170-mRNA-1
chr7_3 CDS 86301893 86302315 86301893 ID=Msa1133170-mRNA-1:cds;Parent=Msa1133170-mRNA-1
chr7_3 CDS 86302416 86302518 86302416 ID=Msa1133170-mRNA-1:cds;Parent=Msa1133170-mRNA-1
chr7_3 CDS 86302667 86302779 86302667 ID=Msa1133170-mRNA-1:cds;Parent=Msa1133170-mRNA-1
chr7_3 CDS 86303065 86303157 86303065 ID=Msa1133170-mRNA-1:cds;Parent=Msa1133170-mRNA-1
chr7_3 three_prime_UTR 86303158 86303552 86303158 ID=Msa1133170-mRNA-1:three_prime_utr;Parent=Msa1133170-mRNA-1
Gene Sequence

>Msa1133170

ATGCAATTAGCTTCAAACACCGACAACCAAGATTCTTCTTCTTCAGAAACCCAACCCATATTGAATCACCTCTGTGAAATTATTCCTATTTCTGCCACGTCTGACAATCATGATATAGAGAATGAGTCTTCTCGTCTTGTTGTTGTAAATGCTGATCACCCACAATGCCGGATATGCCTTGATCTTGGAGGAGAAGACTTAATTGCCCCCTGCCATTGCAAAGGTACCCAAAAGTATGTCCACAGATCATGTCTCGATAACTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAATGCAGAGCTGTCTTCATAATTCGACCAAATGTCCCTAAAGATCGATGGTGGTTGAGATTGAAATTTCAGTTTCTTGTTGCCAGAGATCATGCATTCATTTTCATCATTGTTCAACTCGTTGTTGCTTTCTTGGGAGTGCTTATTTATAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATACGGATTTTACACAATGGCTGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCAATAATATGTGGGCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAGTATGTGGTAGAAGATCGAGAACATGTAAAGGATGTGCCTGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG
Protein sequence

>Msa1133170

MQLASNTDNQDSSSSETQPILNHLCEIIPISATSDNHDIENESSRLVVVNADHPQCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFIIRPNVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKDVPELDPSHVTELRMLGLY*