AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159170 MtrunA17_Chr1g0171501 95.574 610 20 3 1 607 1 606 0.0 1128
Msa0159170 MtrunA17_Chr7g0256181 56.508 630 244 7 1 607 1 623 0.0 691
Msa0159170 MtrunA17_Chr1g0211201 59.239 184 25 2 300 483 1 134 3.05e-59 194
Msa0159170 MtrunA17_Chr2g0328121 27.851 456 319 5 153 598 56 511 1.08e-53 191
Msa0159170 MtrunA17_Chr1g0211211 86.207 87 12 0 521 607 1 87 2.76e-45 155
Msa0159170 MtrunA17_Chr8g0368151 28.062 449 301 9 152 584 35 477 4.14e-43 161
Msa0159170 MtrunA17_Chr2g0282091 25.208 480 322 10 126 581 11 477 8.30e-38 146
Msa0159170 MtrunA17_Chr1g0185601 26.818 440 297 12 159 581 55 486 4.21e-36 142
Msa0159170 MtrunA17_Chr8g0359961 25.290 431 305 10 135 551 26 453 5.86e-36 141
Msa0159170 MtrunA17_Chr2g0303221 25.301 415 284 10 154 551 45 450 1.84e-30 125
Msa0159170 MtrunA17_Chr4g0021331 24.697 413 279 9 160 551 47 448 9.26e-29 120
Msa0159170 MtrunA17_Chr2g0324251 25.307 407 286 6 160 550 52 456 6.81e-27 114
Msa0159170 MtrunA17_Chr1g0155351 27.703 296 202 7 155 443 69 359 1.90e-26 112
Msa0159170 MtrunA17_Chr1g0194521 24.083 436 306 14 126 548 81 504 1.99e-25 110
Msa0159170 MtrunA17_Chr3g0132571 24.773 440 307 11 159 581 56 488 4.41e-25 109
Msa0159170 MtrunA17_Chr1g0210801 23.706 367 264 8 234 591 169 528 1.88e-18 89.0
Msa0159170 MtrunA17_Chr1g0210801 26.316 266 190 4 246 505 281 546 1.01e-16 83.6
Msa0159170 MtrunA17_Chr1g0196741 23.301 309 231 5 236 540 280 586 5.64e-17 85.1
Msa0159170 MtrunA17_Chr3g0099661 21.587 315 223 6 262 562 473 777 1.86e-16 83.2
Msa0159170 MtrunA17_Chr3g0099661 20.398 402 308 7 170 561 167 566 2.60e-14 76.6
Msa0159170 MtrunA17_Chr3g0099661 20.339 295 229 4 244 533 315 608 6.41e-12 68.9
Msa0159170 MtrunA17_Chr7g0265721 20.303 330 253 4 234 562 117 437 1.42e-15 80.5
Msa0159170 MtrunA17_Chr3g0089851 23.019 265 194 5 305 562 198 459 1.86e-15 79.3
Msa0159170 MtrunA17_Chr1g0166071 22.500 360 265 7 244 594 275 629 2.40e-15 79.7
Msa0159170 MtrunA17_Chr5g0396041 24.528 265 193 4 250 509 312 574 6.92e-15 78.6
Msa0159170 MtrunA17_Chr5g0396041 21.613 310 204 5 243 547 266 541 2.49e-11 67.0
Msa0159170 MtrunA17_Chr2g0297991 22.685 432 296 11 156 561 143 562 7.68e-15 78.2
Msa0159170 MtrunA17_Chr2g0297991 22.063 349 223 7 234 540 410 751 6.44e-14 75.1
Msa0159170 MtrunA17_Chr5g0417961 22.006 359 268 6 244 594 274 628 1.28e-14 77.4
Msa0159170 MtrunA17_Chr5g0419551 22.674 344 218 9 242 572 355 663 1.31e-14 77.4
Msa0159170 MtrunA17_Chr3g0125131 20.350 457 313 10 146 594 40 453 4.55e-14 75.1
Msa0159170 MtrunA17_Chr1g0147171 22.222 333 252 5 242 568 145 476 1.28e-13 73.9
Msa0159170 MtrunA17_Chr8g0390501 22.857 315 230 6 264 568 136 447 1.39e-13 73.9
Msa0159170 MtrunA17_Chr7g0256621 21.024 371 269 8 191 539 85 453 2.08e-13 73.2
Msa0159170 MtrunA17_Chr2g0290431 22.222 270 206 2 301 566 50 319 2.70e-13 72.8
Msa0159170 MtrunA17_Chr2g0290441 22.006 359 268 6 218 566 88 444 3.46e-13 72.8
Msa0159170 MtrunA17_Chr8g0359551 24.561 285 203 5 264 540 165 445 3.84e-13 72.4
Msa0159170 MtrunA17_Chr3g0136851 20.652 368 250 6 238 565 163 528 6.48e-13 72.0
Msa0159170 MtrunA17_Chr8g0387281 23.673 245 177 5 302 540 308 548 9.50e-13 71.2
Msa0159170 MtrunA17_Chr6g0481991 20.343 408 276 9 189 584 177 547 1.25e-12 70.9
Msa0159170 MtrunA17_Chr3g0143851 21.351 370 276 7 246 601 283 651 2.12e-12 70.1
Msa0159170 MtrunA17_Chr3g0143851 21.503 386 292 7 164 540 271 654 8.47e-12 68.2
Msa0159170 MtrunA17_Chr3g0143851 21.771 271 203 5 283 547 149 416 9.32e-12 68.2
Msa0159170 MtrunA17_Chr2g0290451 22.712 295 217 4 280 566 151 442 3.86e-12 69.3
Msa0159170 MtrunA17_Chr8g0392911 24.194 248 180 6 297 539 427 671 4.10e-12 69.3
Msa0159170 MtrunA17_Chr4g0059671 20.833 336 247 7 242 565 209 537 5.43e-12 68.9
Msa0159170 MtrunA17_Chr1g0168811 22.635 296 212 7 300 584 242 531 6.79e-12 68.6
Msa0159170 MtrunA17_Chr1g0168811 23.901 364 224 9 276 592 252 609 7.28e-12 68.6
Msa0159170 MtrunA17_Chr4g0076151 21.575 292 224 3 280 566 185 476 7.39e-12 68.6
Msa0159170 MtrunA17_Chr4g0048611 22.363 237 173 4 301 529 142 375 7.76e-12 68.6
Msa0159170 MtrunA17_Chr7g0246931 21.739 391 279 11 189 561 154 535 1.79e-11 67.0
Msa0159170 MtrunA17_Chr5g0434021 20.937 363 272 8 244 600 296 649 2.47e-11 67.0
Msa0159170 MtrunA17_Chr1g0170071 18.462 390 269 8 243 587 445 830 3.45e-11 66.6
Msa0159170 MtrunA17_Chr3g0121341 19.915 236 183 3 332 562 182 416 3.65e-11 66.2
Msa0159170 MtrunA17_Chr1g0182521 24.354 271 196 5 244 507 310 578 6.52e-11 65.5
Msa0159170 MtrunA17_Chr8g0382891 23.427 286 203 6 312 584 119 401 7.66e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159170 AT1G80270.1 54.659 558 233 4 61 607 48 596 0.0 621
Msa0159170 AT1G80270.3 54.659 558 233 4 61 607 48 596 0.0 621
Msa0159170 AT1G80270.2 54.659 558 233 4 61 607 48 596 0.0 621
Msa0159170 AT1G80270.5 54.659 558 233 4 61 607 48 596 0.0 621
Msa0159170 AT1G80270.4 54.659 558 233 4 61 607 48 596 0.0 621
Msa0159170 AT1G15480.1 52.850 579 249 6 41 607 28 594 0.0 594
Msa0159170 AT3G15590.1 50.685 511 240 4 98 607 110 609 2.19e-175 511
Msa0159170 AT3G15590.2 50.685 511 240 4 98 607 110 609 2.19e-175 511
Msa0159170 AT1G07590.1 29.032 434 298 4 153 576 78 511 1.08e-47 175
Msa0159170 AT1G60770.1 27.579 475 320 10 128 586 13 479 1.53e-44 166
Msa0159170 AT4G21705.1 26.540 422 289 8 155 561 40 455 7.25e-40 152
Msa0159170 AT2G20710.1 28.293 410 274 8 155 550 53 456 5.90e-38 147
Msa0159170 AT4G02820.1 26.959 434 297 6 160 581 81 506 5.57e-36 142
Msa0159170 AT1G02150.1 25.304 411 283 9 154 547 81 484 1.64e-34 137
Msa0159170 AT5G27460.1 27.386 482 315 13 123 581 22 491 9.09e-34 135
Msa0159170 AT2G20710.2 28.611 360 237 8 205 550 8 361 1.36e-29 121
Msa0159170 AT1G02370.1 26.957 345 239 9 135 469 65 406 5.64e-27 115
Msa0159170 AT4G01990.1 26.567 335 232 10 138 461 35 366 9.58e-25 108
Msa0159170 AT3G23020.1 22.560 461 323 10 156 594 206 654 2.81e-21 99.0
Msa0159170 AT1G28020.1 26.744 258 179 5 159 409 55 309 9.79e-21 96.3
Msa0159170 AT5G09450.1 22.297 296 219 6 155 443 70 361 4.87e-20 93.2
Msa0159170 AT2G35130.3 22.759 290 215 4 284 567 235 521 3.38e-18 89.0
Msa0159170 AT2G35130.3 24.823 282 206 4 230 505 284 565 2.10e-14 76.6
Msa0159170 AT2G35130.1 22.759 290 215 4 284 567 238 524 3.62e-18 88.6
Msa0159170 AT2G35130.1 24.823 282 206 4 230 505 287 568 2.37e-14 76.6
Msa0159170 AT5G02860.1 22.318 466 299 9 156 566 116 573 4.91e-18 89.0
Msa0159170 AT5G02860.1 22.876 306 226 6 244 540 282 586 1.73e-15 80.5
Msa0159170 AT5G02860.1 20.721 333 248 7 264 585 442 769 8.60e-13 72.0
Msa0159170 AT5G02860.4 22.318 466 299 9 156 566 116 573 4.91e-18 89.0
Msa0159170 AT5G02860.4 22.876 306 226 6 244 540 282 586 1.73e-15 80.5
Msa0159170 AT5G02860.4 20.721 333 248 7 264 585 442 769 8.60e-13 72.0
Msa0159170 AT5G02860.2 22.318 466 299 9 156 566 116 573 4.91e-18 89.0
Msa0159170 AT5G02860.2 22.876 306 226 6 244 540 282 586 1.73e-15 80.5
Msa0159170 AT5G02860.2 20.721 333 248 7 264 585 442 769 8.60e-13 72.0
Msa0159170 AT5G02860.5 22.318 466 299 9 156 566 116 573 4.91e-18 89.0
Msa0159170 AT5G02860.5 22.876 306 226 6 244 540 282 586 1.73e-15 80.5
Msa0159170 AT5G02860.5 20.721 333 248 7 264 585 442 769 8.60e-13 72.0
Msa0159170 AT5G02860.3 22.318 466 299 9 156 566 116 573 4.91e-18 89.0
Msa0159170 AT5G02860.3 22.876 306 226 6 244 540 282 586 1.73e-15 80.5
Msa0159170 AT5G02860.3 20.721 333 248 7 264 585 442 769 8.60e-13 72.0
Msa0159170 AT2G35130.2 22.759 290 215 4 284 567 260 546 5.91e-18 88.2
Msa0159170 AT2G35130.2 24.823 282 206 4 230 505 309 590 4.29e-14 75.9
Msa0159170 AT4G39620.2 24.581 358 237 10 242 584 69 408 5.82e-16 81.6
Msa0159170 AT4G39620.2 19.298 285 194 4 304 585 202 453 6.18e-11 65.5
Msa0159170 AT4G39620.1 24.581 358 237 10 242 584 69 408 5.87e-16 81.6
Msa0159170 AT4G39620.1 19.298 285 194 5 304 585 202 453 5.88e-11 65.9
Msa0159170 AT4G16390.1 21.798 367 277 6 208 566 106 470 2.65e-15 80.1
Msa0159170 AT2G06000.1 25.074 339 208 11 303 604 96 425 4.47e-15 79.0
Msa0159170 AT2G06000.2 25.074 339 208 11 303 604 96 425 4.47e-15 79.0
Msa0159170 AT1G74850.1 21.739 299 226 5 293 584 159 456 1.69e-14 77.4
Msa0159170 AT1G02060.1 22.166 397 263 9 178 562 71 433 2.30e-14 77.0
Msa0159170 AT2G18940.1 20.988 324 249 4 244 561 213 535 2.51e-14 77.0
Msa0159170 AT2G18940.1 21.287 404 307 7 190 584 264 665 2.42e-13 73.9
Msa0159170 AT3G11380.1 27.731 238 159 5 108 332 304 541 5.85e-14 75.1
Msa0159170 AT1G13630.5 22.663 353 260 7 244 586 259 608 6.27e-14 75.5
Msa0159170 AT1G13630.4 22.663 353 260 7 244 586 272 621 6.72e-14 75.5
Msa0159170 AT1G13630.2 22.663 353 260 7 244 586 267 616 6.76e-14 75.5
Msa0159170 AT1G13630.6 22.663 353 260 7 244 586 97 446 6.86e-14 75.5
Msa0159170 AT1G13630.1 22.663 353 260 7 244 586 225 574 8.63e-14 75.1
Msa0159170 AT1G43010.1 25.592 211 149 4 155 363 51 255 1.15e-13 72.0
Msa0159170 AT1G13630.3 22.663 353 260 7 244 586 134 483 1.18e-13 74.7
Msa0159170 AT4G31850.1 24.458 323 230 7 233 548 359 674 1.37e-13 74.7
Msa0159170 AT2G17140.1 21.724 290 216 4 305 584 142 430 1.95e-13 74.3
Msa0159170 AT2G17140.1 20.408 294 215 4 297 584 348 628 1.43e-11 68.2
Msa0159170 AT2G17140.2 21.724 290 216 4 305 584 142 430 1.95e-13 74.3
Msa0159170 AT2G17140.2 20.408 294 215 4 297 584 348 628 1.43e-11 68.2
Msa0159170 AT5G21222.1 22.074 299 224 5 301 591 380 677 1.96e-13 73.9
Msa0159170 AT5G21222.2 22.074 299 224 5 301 591 380 677 1.96e-13 73.9
Msa0159170 AT5G21222.4 22.074 299 224 5 301 591 380 677 1.96e-13 73.9
Msa0159170 AT5G21222.3 22.074 299 224 5 301 591 380 677 1.96e-13 73.9
Msa0159170 AT2G31400.2 21.345 342 258 7 271 604 263 601 7.52e-13 72.4
Msa0159170 AT3G22470.1 20.073 274 214 3 296 565 231 503 7.58e-13 72.0
Msa0159170 AT5G16640.1 24.080 299 216 5 296 586 207 502 7.68e-13 71.6
Msa0159170 AT2G31400.1 21.345 342 258 7 271 604 263 601 7.72e-13 72.4
Msa0159170 AT3G04760.1 21.622 370 257 10 186 532 94 453 1.18e-12 71.2
Msa0159170 AT5G25630.1 24.860 358 220 8 256 567 130 484 1.77e-12 70.9
Msa0159170 AT5G25630.3 24.860 358 220 8 256 567 79 433 2.32e-12 70.1
Msa0159170 AT1G73710.1 20.556 360 243 7 244 562 308 665 2.62e-12 70.5
Msa0159170 AT1G28000.1 24.107 224 161 4 156 372 49 270 2.68e-12 69.3
Msa0159170 AT1G12700.1 21.569 255 195 3 296 546 214 467 4.24e-12 69.7
Msa0159170 AT1G12700.3 21.569 255 195 3 296 546 230 483 4.30e-12 69.7
Msa0159170 AT1G12700.2 21.569 255 195 3 296 546 230 483 4.30e-12 69.7
Msa0159170 AT5G39980.1 21.246 353 256 6 232 573 150 491 5.61e-12 69.3
Msa0159170 AT1G62590.2 18.957 422 319 8 160 567 213 625 7.06e-12 68.9
Msa0159170 AT1G62590.1 18.957 422 319 8 160 567 213 625 7.06e-12 68.9
Msa0159170 AT1G77360.2 19.432 458 316 11 146 594 41 454 9.80e-12 68.2
Msa0159170 AT1G77360.1 19.432 458 316 11 146 594 77 490 1.02e-11 68.2
Msa0159170 AT3G59040.1 21.316 380 249 11 177 544 105 446 1.02e-11 68.2
Msa0159170 AT3G04760.2 18.950 438 315 13 186 593 94 521 1.37e-11 67.8
Msa0159170 AT3G06920.2 21.212 297 213 6 301 584 417 705 1.50e-11 68.2
Msa0159170 AT3G06920.3 21.212 297 213 6 301 584 417 705 1.50e-11 68.2
Msa0159170 AT2G15630.1 21.173 307 233 5 239 540 153 455 1.61e-11 67.8
Msa0159170 AT3G59040.2 20.413 436 285 11 133 544 56 453 1.80e-11 67.4
Msa0159170 AT2G32630.1 21.795 468 295 14 133 577 182 601 1.84e-11 67.4
Msa0159170 AT3G06920.1 21.212 297 213 6 301 584 403 691 2.10e-11 67.8
Msa0159170 AT3G16010.1 22.252 373 238 11 189 548 282 615 2.40e-11 67.0
Msa0159170 AT3G16890.1 19.536 302 228 4 292 581 162 460 2.53e-11 67.0
Msa0159170 AT2G41720.1 19.646 621 359 17 69 562 3 610 3.90e-11 66.6
Msa0159170 AT2G41720.3 19.885 523 297 14 156 562 94 610 3.95e-11 66.6
Msa0159170 AT5G42310.1 25.000 240 175 3 243 477 446 685 5.10e-11 66.2
Msa0159170 AT3G16890.2 19.536 302 228 4 292 581 33 331 5.43e-11 65.9
Msa0159170 AT1G63330.3 18.957 422 319 8 160 567 138 550 6.55e-11 65.5
Msa0159170 AT1G63330.1 18.957 422 319 8 160 567 138 550 6.55e-11 65.5
Msa0159170 AT1G63330.2 18.957 422 319 8 160 567 138 550 6.55e-11 65.5
Msa0159170 AT3G53170.4 29.457 129 86 3 246 371 241 367 8.67e-11 65.1
Msa0159170 AT3G53170.2 29.457 129 86 3 246 371 291 417 9.68e-11 65.1
Msa0159170 AT3G53170.1 29.457 129 86 3 246 371 291 417 9.68e-11 65.1

Find 160 sgRNAs with CRISPR-Local

Find 587 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCGCCTTTATGCAATTC+TGG 0.131994 1_4:-29159779 Msa0159170:CDS
AATTCTCCTCTGAAAGAATT+TGG 0.158452 1_4:+29160234 None:intergenic
CTTTGGTAGGCCACGCAATT+TGG 0.211951 1_4:+29160281 None:intergenic
TTGAGATGATGTCAAATAAA+TGG 0.223409 1_4:-29159633 Msa0159170:CDS
CATCGGCATCATCCTCATTT+TGG 0.235164 1_4:+29166731 None:intergenic
GTACTGATTAATGCATTAAT+AGG 0.246031 1_4:-29159009 Msa0159170:three_prime_UTR
AAGGCGATTGTAAGTGTTTC+AGG 0.253571 1_4:-29166544 Msa0159170:CDS
CTGATGAAGTGGAGAGAATT+TGG 0.254386 1_4:-29159750 Msa0159170:CDS
AGAAGAGGCAATAAATAAAT+AGG 0.270260 1_4:-29167250 None:intergenic
CCAAAGCTTTGTTGGGGAAT+AGG 0.275744 1_4:+29159197 None:intergenic
AATAGGAGTATAAGAGTAGA+AGG 0.281841 1_4:-29167233 Msa0159170:five_prime_UTR
GCCAGGCATTATGCCGCAGC+TGG 0.301114 1_4:-29159883 Msa0159170:CDS
CAGGAGTGCTTCGTAATTCC+TGG 0.308690 1_4:+29159600 None:intergenic
AATGTATGGAAGGGCTTTGC+AGG 0.317570 1_4:-29166422 Msa0159170:intron
ACGGATCAAGTTGCGCCAAC+TGG 0.333303 1_4:+29159170 None:intergenic
CTCGACAAGTGGGTTGAAAA+AGG 0.339148 1_4:-29166502 Msa0159170:CDS
ACTATTATTAGTTAGTTTGA+TGG 0.339773 1_4:-29159068 Msa0159170:three_prime_UTR
CAAGACAAAATATTCAAATT+CGG 0.341894 1_4:+29159031 None:intergenic
CAAGGGCTTAATAACAATTC+AGG 0.347172 1_4:-29166934 Msa0159170:CDS
CCTTGCTGCAATTGAAGCTT+GGG 0.357826 1_4:-29159692 Msa0159170:CDS
CACTCCTGAAAATTTATATA+AGG 0.364562 1_4:-29159585 Msa0159170:CDS
CCCAGCTGCGGCATAATGCC+TGG 0.370665 1_4:+29159882 None:intergenic
GCCTTGCTGCAATTGAAGCT+TGG 0.373021 1_4:-29159693 Msa0159170:CDS
CTGGGCAGCCAAAGCTTTGT+TGG 0.373233 1_4:+29159189 None:intergenic
CTTCGCCTTTATGCAATTCT+GGG 0.384775 1_4:-29159778 Msa0159170:CDS
TGGCGCAACTTGATCCGTTT+AGG 0.388967 1_4:-29159165 Msa0159170:CDS
GATCCCATATGCCGGTAGTT+TGG 0.391981 1_4:+29159243 None:intergenic
ACTAGCTAACTGTGCTAGTC+TGG 0.392913 1_4:-29160196 Msa0159170:CDS
AGAAAATCTTCTCTGCGTTA+TGG 0.396626 1_4:+29159338 None:intergenic
TGGGCAGCCAAAGCTTTGTT+GGG 0.398974 1_4:+29159190 None:intergenic
CTGAATTGTTATTAAGCCCT+TGG 0.401030 1_4:+29166935 None:intergenic
AACTACCGGCATATGGGATC+AGG 0.402981 1_4:-29159240 Msa0159170:CDS
AATGCCAAACTACCGGCATA+TGG 0.407390 1_4:-29159247 Msa0159170:CDS
ACAGCCTCCTCTGAAGTGTT+TGG 0.409253 1_4:+29166880 None:intergenic
TGTATGATTTGATGAGAATC+AGG 0.410014 1_4:+29166850 None:intergenic
CAATCAAGCAAATCAGAAAC+TGG 0.410076 1_4:+29159136 None:intergenic
AGCTGACGTGTTACTTATGA+TGG 0.410774 1_4:-29160055 Msa0159170:CDS
TTCAACAAAATGAGGGAGTT+AGG 0.419320 1_4:-29160147 Msa0159170:CDS
TTGCAAGCAAATGCTGTAAC+AGG 0.420496 1_4:+29160120 None:intergenic
GCATAAAGGCGAAGCAAAGT+TGG 0.422948 1_4:+29159787 None:intergenic
GGAGATAGTGGATGCACAAT+AGG 0.423312 1_4:-29159520 Msa0159170:CDS
CAAAGCTTTGGCTGCCCAGT+TGG 0.424772 1_4:-29159185 Msa0159170:CDS
CTTCGAAGGCGTAAAATGTA+TGG 0.427140 1_4:-29166436 Msa0159170:CDS
CGAAGAGCCCACATACTTGT+TGG 0.429511 1_4:+29167136 None:intergenic
GAATTAAGCAGGCAAGAGAT+TGG 0.439041 1_4:-29166475 Msa0159170:CDS
CCTATTCCCCAACAAAGCTT+TGG 0.442635 1_4:-29159197 Msa0159170:CDS
CCATCTAACACGGGCATCCT+TGG 0.442637 1_4:-29159905 Msa0159170:CDS
GTTTCTGATTTGCTTGATTG+AGG 0.445276 1_4:-29159133 Msa0159170:exon
GTGTCTCTTTATGTTCAAGC+AGG 0.447381 1_4:-29159475 Msa0159170:CDS
AATTAAGCAGGCAAGAGATT+GGG 0.449212 1_4:-29166474 Msa0159170:CDS
CCTTTATGCAATTCTGGGTA+GGG 0.456352 1_4:-29159773 Msa0159170:CDS
AAAACTTGAAAGAGAATATG+TGG 0.460609 1_4:-29159816 Msa0159170:CDS
TCTGGAAAATTTGAGGAAAA+CGG 0.461036 1_4:-29160178 Msa0159170:CDS
CCCTACCCAGAATTGCATAA+AGG 0.464815 1_4:+29159773 None:intergenic
CGTGTTACTTATGATGGAAA+AGG 0.465313 1_4:-29160049 Msa0159170:CDS
AAGACAAAATATTCAAATTC+GGG 0.468706 1_4:+29159032 None:intergenic
GCACAATAGGTCCAACAACC+TGG 0.470333 1_4:-29159507 Msa0159170:CDS
GATGCCCGTGTTAGATGGTC+TGG 0.472477 1_4:+29159910 None:intergenic
TTCATGGGGTTCATTTGTTG+AGG 0.473045 1_4:-29158977 Msa0159170:three_prime_UTR
GTGCTAGTCTGGAAAATTTG+AGG 0.473927 1_4:-29160185 Msa0159170:CDS
CATCAATGAGCTGGAGTTGT+CGG 0.474367 1_4:-29166629 Msa0159170:CDS
CTCTGTGACCAACAAGTATG+TGG 0.476432 1_4:-29167144 Msa0159170:exon
TGAGTCAAAGGCACGGGTTG+AGG 0.476716 1_4:-29159719 Msa0159170:CDS
AAGGATCTTATTAAGACAAT+GGG 0.483656 1_4:-29159541 Msa0159170:CDS
ATTTGATGAGAATCAGGAAC+AGG 0.485096 1_4:+29166856 None:intergenic
GCCTTTATGCAATTCTGGGT+AGG 0.486972 1_4:-29159774 Msa0159170:CDS
CATAAAGGCGAAGCAAAGTT+GGG 0.488820 1_4:+29159788 None:intergenic
CATTTGAAAAGTTGAAGCAC+AGG 0.492401 1_4:+29159093 None:intergenic
CCAGGCATTATGCCGCAGCT+GGG 0.492421 1_4:-29159882 Msa0159170:CDS
CCAAGGATGCCCGTGTTAGA+TGG 0.499956 1_4:+29159905 None:intergenic
TTGGAAGGTTTGTGAGTCAA+AGG 0.500538 1_4:-29159731 Msa0159170:CDS
CATGTTCCAAATTCTTTCAG+AGG 0.502733 1_4:-29160240 Msa0159170:CDS
ATTAAGACAATGGGAGATAG+TGG 0.504532 1_4:-29159532 Msa0159170:CDS
TTGATTCTGCTCTCGACAAG+TGG 0.505632 1_4:-29166513 Msa0159170:CDS
ATGCCAAACTACCGGCATAT+GGG 0.508424 1_4:-29159246 Msa0159170:CDS
AGGAAACATTCAACAAAATG+AGG 0.512047 1_4:-29160155 Msa0159170:CDS
CGGATCAAGTTGCGCCAACT+GGG 0.512477 1_4:+29159171 None:intergenic
TGGCTATCTCCGTCTGCATC+CGG 0.512712 1_4:+29166670 None:intergenic
ATCTTGTAAGTATAAGAAGA+AGG 0.512943 1_4:+29160015 None:intergenic
TAACACGGGCATCCTTGGCC+AGG 0.519638 1_4:-29159900 Msa0159170:CDS
AAGAGACACAAGTGCATCCC+AGG 0.520884 1_4:+29159489 None:intergenic
GGCCTGTCTAATGATATTGA+TGG 0.522656 1_4:-29159976 Msa0159170:CDS
CAGCCTGTGACGAAAGTTCA+CGG 0.524345 1_4:+29166764 None:intergenic
TGGAACTGTAGGCCTTGGAT+TGG 0.526771 1_4:-29160368 Msa0159170:intron
CATAAGCCTGTGCTAGAGCA+TGG 0.527160 1_4:+29159272 None:intergenic
TGAAGATCGATTGACTGAGC+CGG 0.527476 1_4:-29166689 Msa0159170:CDS
TCCCATCAATATCATTAGAC+AGG 0.528639 1_4:+29159974 None:intergenic
CGGCATATGGGATCAGGGAG+AGG 0.529325 1_4:-29159234 Msa0159170:CDS
TAAGATGCTAAACAAGGGTA+AGG 0.531142 1_4:-29159560 Msa0159170:CDS
CACCCGTGAACTTTCGTCAC+AGG 0.531890 1_4:-29166767 Msa0159170:CDS
GAGACGGTCAGAACTATTCA+AGG 0.532469 1_4:-29166563 Msa0159170:CDS
TCCATTCCATGCTCTAGCAC+AGG 0.537456 1_4:-29159278 Msa0159170:CDS
ATAAATGGAAACTTACTGCC+AGG 0.540928 1_4:-29159618 Msa0159170:CDS
CTCCATGTCATCATGATCAT+CGG 0.547200 1_4:+29166714 None:intergenic
TGGAATTAATTTGACAGAAG+CGG 0.547793 1_4:+29166900 None:intergenic
GCTATATTGAAGGAGATTGA+AGG 0.548918 1_4:-29159841 Msa0159170:CDS
TAAGGATCTTATTAAGACAA+TGG 0.550207 1_4:-29159542 Msa0159170:CDS
TCTGGGTAGGGCTGATGAAG+TGG 0.551487 1_4:-29159761 Msa0159170:CDS
CTTCTGTTCGCCTCACGCTA+AGG 0.553714 1_4:-29167108 Msa0159170:intron
TATGAATTTGTAGAAACCAA+GGG 0.554373 1_4:-29166951 Msa0159170:intron
GTTTGACTCTAGCCAATCCA+AGG 0.556722 1_4:+29160356 None:intergenic
TGCGGCATAATGCCTGGCCA+AGG 0.557594 1_4:+29159888 None:intergenic
TGAAGTGGAGAGAATTTGGA+AGG 0.561253 1_4:-29159746 Msa0159170:CDS
TCAAGCAGGGGAAGTCGAAA+AGG 0.563985 1_4:-29159461 Msa0159170:CDS
GAAGGCGTAAAATGTATGGA+AGG 0.564251 1_4:-29166432 Msa0159170:CDS
TATGGAGCAGTATGCAAAGA+GGG 0.564766 1_4:-29159368 Msa0159170:CDS
CTCTCCCTGATCCCATATGC+CGG 0.566853 1_4:+29159235 None:intergenic
GAAGAAAATTGAAGAAGCAG+AGG 0.567623 1_4:-29159662 Msa0159170:CDS
AATCACTTTCTTCAAGGAGA+CGG 0.567734 1_4:-29166579 Msa0159170:CDS
TTATGAAAATGCCAAACTAC+CGG 0.569392 1_4:-29159254 Msa0159170:CDS
ACAAGTGCATCCCAGGTTGT+TGG 0.573061 1_4:+29159496 None:intergenic
GTCATAAAAGTAGTAAACAT+TGG 0.573772 1_4:+29159394 None:intergenic
TGTCTCTTTATGTTCAAGCA+GGG 0.574299 1_4:-29159474 Msa0159170:CDS
ATAGGAGTATAAGAGTAGAA+GGG 0.575595 1_4:-29167232 Msa0159170:five_prime_UTR
TTATGAATTTGTAGAAACCA+AGG 0.576721 1_4:-29166952 Msa0159170:intron
GGTTTGTGAGTCAAAGGCAC+GGG 0.579121 1_4:-29159725 Msa0159170:CDS
GTTGAGACAATGAAGACAGA+AGG 0.579163 1_4:-29159940 Msa0159170:CDS
TGATTCTGCTCTCGACAAGT+GGG 0.581364 1_4:-29166512 Msa0159170:CDS
GCCTGTGCTAGAGCATGGAA+TGG 0.581883 1_4:+29159277 None:intergenic
ATTAATTCCAAACACTTCAG+AGG 0.585281 1_4:-29166887 Msa0159170:CDS
TGAAGTAGACATCAATGAGC+TGG 0.586036 1_4:-29166638 Msa0159170:CDS
TGATGCCAGTAGCCAAAATG+AGG 0.589963 1_4:-29166743 Msa0159170:CDS
TGGCATTGAATAGTCTTCGA+AGG 0.593800 1_4:-29166450 Msa0159170:CDS
AGCCTGTGACGAAAGTTCAC+GGG 0.595955 1_4:+29166765 None:intergenic
TTGACTGAGCCGGATGCAGA+CGG 0.597854 1_4:-29166679 Msa0159170:CDS
TGTCTACTTCAGCAGCGTCA+TGG 0.601360 1_4:+29166650 None:intergenic
AGCATGAGGTATGTGGCGGT+CGG 0.601401 1_4:+29166810 None:intergenic
CAAATTGCGTGGCCTACCAA+AGG 0.601950 1_4:-29160280 Msa0159170:CDS
AAGGCATAAGATGCTAAACA+AGG 0.601987 1_4:-29159566 Msa0159170:CDS
CACAATAGGTCCAACAACCT+GGG 0.602444 1_4:-29159506 Msa0159170:CDS
GGAAACATTCAACAAAATGA+GGG 0.611621 1_4:-29160154 Msa0159170:CDS
CCCAAGCTTCAATTGCAGCA+AGG 0.612921 1_4:+29159692 None:intergenic
ACTACCGGCATATGGGATCA+GGG 0.615630 1_4:-29159239 Msa0159170:CDS
AAGCAGGCAAGAGATTGGGT+TGG 0.616311 1_4:-29166470 Msa0159170:CDS
AATTCCAAACACTTCAGAGG+AGG 0.617941 1_4:-29166884 Msa0159170:CDS
CTTGCTGCAATTGAAGCTTG+GGG 0.618565 1_4:-29159691 Msa0159170:CDS
GCCTGTCTAATGATATTGAT+GGG 0.621188 1_4:-29159975 Msa0159170:CDS
AAACTTGAAAGAGAATATGT+GGG 0.621557 1_4:-29159815 Msa0159170:CDS
CTTGTCGAGAGCAGAATCAA+CGG 0.622909 1_4:+29166516 None:intergenic
AGGTTTGTGAGTCAAAGGCA+CGG 0.624658 1_4:-29159726 Msa0159170:CDS
GGGTGGTGAGAGTAAATCTG+TGG 0.628134 1_4:+29166785 None:intergenic
AAGGCGTAAAATGTATGGAA+GGG 0.634776 1_4:-29166431 Msa0159170:CDS
GATTTGATTGCCAAATTGCG+TGG 0.637784 1_4:-29160291 Msa0159170:CDS
GTCTCTTTATGTTCAAGCAG+GGG 0.638136 1_4:-29159473 Msa0159170:CDS
TCTGTGACCAACAAGTATGT+GGG 0.644471 1_4:-29167143 Msa0159170:exon
GGGCAGCCAAAGCTTTGTTG+GGG 0.644851 1_4:+29159191 None:intergenic
TGTGGGAAGCATGAGGTATG+TGG 0.646414 1_4:+29166803 None:intergenic
GTGAACCAGACCATCTAACA+CGG 0.646703 1_4:-29159915 Msa0159170:CDS
AGGCATAAGATGCTAAACAA+GGG 0.655332 1_4:-29159565 Msa0159170:CDS
TGCCGATGATCATGATGACA+TGG 0.661998 1_4:-29166716 Msa0159170:CDS
GGTGGTGAGAGTAAATCTGT+GGG 0.666364 1_4:+29166786 None:intergenic
GTAAATCTGTGGGAAGCATG+AGG 0.666890 1_4:+29166796 None:intergenic
GGAAAATTTGAGGAAAACGG+AGG 0.667007 1_4:-29160175 Msa0159170:CDS
AAGAATTTGGAACATGCTCG+AGG 0.672014 1_4:+29160247 None:intergenic
CTGTGACGAAAGTTCACGGG+TGG 0.682238 1_4:+29166768 None:intergenic
TTATGGAGCAGTATGCAAAG+AGG 0.687746 1_4:-29159369 Msa0159170:CDS
TGAACCAGACCATCTAACAC+GGG 0.692735 1_4:-29159914 Msa0159170:CDS
ATGGAGCAGTATGCAAAGAG+GGG 0.696039 1_4:-29159367 Msa0159170:CDS
AGATTGATAACCTTAGCGTG+AGG 0.709054 1_4:+29167098 None:intergenic
GGGAAGCATGAGGTATGTGG+CGG 0.750944 1_4:+29166806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTAATTTAATTTTA+TGG + chr1_4:29163605-29163624 None:intergenic 0.0%
!! AATCTTAAATTGTATAAAAT+TGG + chr1_4:29159820-29159839 None:intergenic 10.0%
!! TATTTATATATCATAATTAC+GGG + chr1_4:29160503-29160522 None:intergenic 10.0%
!!! TTTTTTAAAAGATAAATACA+AGG - chr1_4:29160976-29160995 Msa0159170:intron 10.0%
!!! TTATTTATTTCTTATGTTTA+CGG + chr1_4:29161291-29161310 None:intergenic 10.0%
!! TTATAGTATCTATAATTATA+TGG + chr1_4:29162195-29162214 None:intergenic 10.0%
!!! TTTTGAAAGATAATTTAAAA+GGG + chr1_4:29162399-29162418 None:intergenic 10.0%
!!! ATTTTGAAAGATAATTTAAA+AGG + chr1_4:29162400-29162419 None:intergenic 10.0%
!! TAAAAAATAAATATTGTTGA+TGG + chr1_4:29164427-29164446 None:intergenic 10.0%
!! AAAATTAAAACATCATATTA+TGG + chr1_4:29165768-29165787 None:intergenic 10.0%
!!! ACTAATATAATTTGTCTATT+TGG - chr1_4:29160523-29160542 Msa0159170:intron 15.0%
!! AAATCTCTCATAAATTATAA+TGG + chr1_4:29160645-29160664 None:intergenic 15.0%
!!! TTTTAAACTTAATATGTGAT+AGG - chr1_4:29160684-29160703 Msa0159170:intron 15.0%
!!! ATATGTTTTTATTTTATCAC+TGG + chr1_4:29160925-29160944 None:intergenic 15.0%
!!! CTTCATTTTTAATTTAAACA+GGG + chr1_4:29161267-29161286 None:intergenic 15.0%
!!! ACTTCATTTTTAATTTAAAC+AGG + chr1_4:29161268-29161287 None:intergenic 15.0%
!! AAATAATATAAAACGAGTTT+AGG - chr1_4:29161317-29161336 Msa0159170:intron 15.0%
!! AAAAATCTTAAAATCTCAAT+AGG - chr1_4:29161629-29161648 Msa0159170:intron 15.0%
!!! AGAGTTAATTTCTTTTTTTA+AGG + chr1_4:29162086-29162105 None:intergenic 15.0%
!! GTTGATTATTAATAGAAATA+GGG + chr1_4:29163691-29163710 None:intergenic 15.0%
!!! TTACAATTTTTTAAATACGT+GGG + chr1_4:29164551-29164570 None:intergenic 15.0%
!!! TTGATTTTATTATTTGATCC+CGG - chr1_4:29159162-29159181 Msa0159170:CDS 20.0%
!! AATAGTGAAAATGATTAAAC+CGG + chr1_4:29159184-29159203 None:intergenic 20.0%
!! ATGTTACAATATAGAAAAGA+TGG - chr1_4:29159877-29159896 Msa0159170:CDS 20.0%
!! AAAAACCTTAACAATCTAAA+AGG - chr1_4:29160213-29160232 Msa0159170:CDS 20.0%
!! AAAACCTTAACAATCTAAAA+GGG - chr1_4:29160214-29160233 Msa0159170:CDS 20.0%
!!! AATATAATTTGTCTATTTGG+TGG - chr1_4:29160526-29160545 Msa0159170:intron 20.0%
!!! ATATAATTTGTCTATTTGGT+GGG - chr1_4:29160527-29160546 Msa0159170:intron 20.0%
!! TTTATCAAATGACTTCATAA+TGG + chr1_4:29160710-29160729 None:intergenic 20.0%
!! TGTTATTGTATTTATGATGA+TGG - chr1_4:29160764-29160783 Msa0159170:intron 20.0%
!!! TAGAATTTTATTGACTATTC+CGG + chr1_4:29161570-29161589 None:intergenic 20.0%
!!! GAGATTTTAAGATTTTTGAA+AGG + chr1_4:29161626-29161645 None:intergenic 20.0%
!! TTTAAGGAATATAGAAAAAC+TGG + chr1_4:29162070-29162089 None:intergenic 20.0%
!! CATATTATCTGCAATTAATT+TGG + chr1_4:29162167-29162186 None:intergenic 20.0%
!!! GTTGTAAAGTTTTTAAAAGA+GGG + chr1_4:29162878-29162897 None:intergenic 20.0%
!!! TGTTGTAAAGTTTTTAAAAG+AGG + chr1_4:29162879-29162898 None:intergenic 20.0%
!! TATACTAGAACTTTATCAAA+TGG + chr1_4:29162963-29162982 None:intergenic 20.0%
!!! TAAATTTTCTAGACGTTTTA+CGG + chr1_4:29162994-29163013 None:intergenic 20.0%
!! ACAATACTTAAATCTCTTAT+AGG - chr1_4:29163029-29163048 Msa0159170:intron 20.0%
!! CAATACTTAAATCTCTTATA+GGG - chr1_4:29163030-29163049 Msa0159170:intron 20.0%
!! TATATTTGATCCAAGAAATT+GGG + chr1_4:29163099-29163118 None:intergenic 20.0%
!! ATATATTTGATCCAAGAAAT+TGG + chr1_4:29163100-29163119 None:intergenic 20.0%
!! GGTTGATTATTAATAGAAAT+AGG + chr1_4:29163692-29163711 None:intergenic 20.0%
!! AATAGAGTTTGATAGATATT+TGG + chr1_4:29163713-29163732 None:intergenic 20.0%
!! AAAATAAATCAATGAAAGAG+AGG - chr1_4:29163783-29163802 Msa0159170:intron 20.0%
!! GGGTATTAAAAAAATTATTG+AGG - chr1_4:29164078-29164097 Msa0159170:intron 20.0%
!!! TTTTTTTTTTTTACCACAGT+TGG - chr1_4:29164229-29164248 Msa0159170:intron 20.0%
!!! TTTTTTTTTTTACCACAGTT+GGG - chr1_4:29164230-29164249 Msa0159170:intron 20.0%
!!! GATTAGTTCTCAATTTTATA+TGG - chr1_4:29164254-29164273 Msa0159170:intron 20.0%
!!! CTTACAATTTTTTAAATACG+TGG + chr1_4:29164552-29164571 None:intergenic 20.0%
!!! AAACTTTGATAATGGAAAAA+TGG + chr1_4:29165491-29165510 None:intergenic 20.0%
!!! TTTTTCCATTATCAAAGTTT+TGG - chr1_4:29165491-29165510 Msa0159170:intron 20.0%
!!! TTTTCCATTATCAAAGTTTT+GGG - chr1_4:29165492-29165511 Msa0159170:intron 20.0%
!!! TGAAGTGTCAATAAAATAAT+TGG + chr1_4:29165548-29165567 None:intergenic 20.0%
!!! GTTTATCTTTTTTCTTTCTT+TGG - chr1_4:29165798-29165817 Msa0159170:intron 20.0%
!!! TATGCCTTATATAAATTTTC+AGG + chr1_4:29166612-29166631 None:intergenic 20.0%
!!! TACTACTTTTATGACTATTA+TGG - chr1_4:29166804-29166823 Msa0159170:CDS 20.0%
!!! ACTATTATTAGTTAGTTTGA+TGG - chr1_4:29167122-29167141 Msa0159170:CDS 20.0%
!! AAGACAAAATATTCAAATTC+GGG + chr1_4:29167161-29167180 None:intergenic 20.0%
!! CAAGACAAAATATTCAAATT+CGG + chr1_4:29167162-29167181 None:intergenic 20.0%
!!! TAATAGGTTTTATGATTTCA+TGG - chr1_4:29167197-29167216 Msa0159170:five_prime_UTR 20.0%
!!! AATAGGTTTTATGATTTCAT+GGG - chr1_4:29167198-29167217 Msa0159170:five_prime_UTR 20.0%
! ATAGTGAAAATGATTAAACC+GGG + chr1_4:29159183-29159202 None:intergenic 25.0%
! TTATGAATTTGTAGAAACCA+AGG - chr1_4:29159238-29159257 Msa0159170:CDS 25.0%
! TATGAATTTGTAGAAACCAA+GGG - chr1_4:29159239-29159258 Msa0159170:CDS 25.0%
! ACAAAAAATCACTTTCTTCA+AGG - chr1_4:29159605-29159624 Msa0159170:CDS 25.0%
! AAAAAGGTAAAGAATTAAGC+AGG - chr1_4:29159704-29159723 Msa0159170:CDS 25.0%
! AACAATAGTTCAATTGTTAG+AGG - chr1_4:29159965-29159984 Msa0159170:CDS 25.0%
!! CAAGAGTTCTTTCTAAAAAA+AGG + chr1_4:29160387-29160406 None:intergenic 25.0%
! TATACCAAACAATCTTAAGT+GGG - chr1_4:29160591-29160610 Msa0159170:intron 25.0%
! GATATAAACACTAAACCATT+AGG + chr1_4:29160803-29160822 None:intergenic 25.0%
! CTAATTCTAATATGCCTAAA+AGG - chr1_4:29161084-29161103 Msa0159170:intron 25.0%
! TATTGTATATTTCGCAACAT+AGG - chr1_4:29161428-29161447 Msa0159170:intron 25.0%
! ATGTTACAAGAAAGACTTAA+TGG + chr1_4:29161479-29161498 None:intergenic 25.0%
! TTCTGACAAGTTAAAATCAT+TGG + chr1_4:29161792-29161811 None:intergenic 25.0%
!!! TAGAAAAACTGGTTTTAAGA+AGG + chr1_4:29162059-29162078 None:intergenic 25.0%
!!! GGTAAAGCTAAAGATTTTTT+CGG + chr1_4:29162475-29162494 None:intergenic 25.0%
! ATTCCTTGCTAAACATAATT+TGG + chr1_4:29162625-29162644 None:intergenic 25.0%
! AAGATTGATTGAGAAAGAAA+AGG + chr1_4:29162691-29162710 None:intergenic 25.0%
!!! AAAGTTTTTAAAAGAGGGAT+TGG + chr1_4:29162873-29162892 None:intergenic 25.0%
!! AGAGATTTAAGTATTGTGAA+GGG + chr1_4:29163026-29163045 None:intergenic 25.0%
!! AAGAGATTTAAGTATTGTGA+AGG + chr1_4:29163027-29163046 None:intergenic 25.0%
!! TTCATGAAATTGGATGATTT+TGG + chr1_4:29163756-29163775 None:intergenic 25.0%
! AAATCATCCAATTTCATGAA+AGG - chr1_4:29163756-29163775 Msa0159170:intron 25.0%
! TTTACTTCCTTTCATGAAAT+TGG + chr1_4:29163766-29163785 None:intergenic 25.0%
!! ATTTTCTACTAATGAGGAAT+TGG + chr1_4:29164190-29164209 None:intergenic 25.0%
! TTCCTCATTAGTAGAAAATT+AGG - chr1_4:29164191-29164210 Msa0159170:intron 25.0%
!! TTCCTAATTTTCTACTAATG+AGG + chr1_4:29164196-29164215 None:intergenic 25.0%
!! AAAGATATTACCAGTTTTCT+TGG - chr1_4:29164297-29164316 Msa0159170:intron 25.0%
!! AAGATATTACCAGTTTTCTT+GGG - chr1_4:29164298-29164317 Msa0159170:intron 25.0%
! ATCACAATTCACACTTATTT+AGG + chr1_4:29164360-29164379 None:intergenic 25.0%
! ATAAGAATAATAATACACCC+AGG + chr1_4:29164485-29164504 None:intergenic 25.0%
! GAGATCAAAACAAAATTTGT+TGG + chr1_4:29165252-29165271 None:intergenic 25.0%
! ATAACTATAGTTAGACATTC+AGG - chr1_4:29165434-29165453 Msa0159170:intron 25.0%
! TAACTATAGTTAGACATTCA+GGG - chr1_4:29165435-29165454 Msa0159170:intron 25.0%
!! AAATGTAATGTGACATTTTG+TGG - chr1_4:29165520-29165539 Msa0159170:intron 25.0%
!! AATGTAATGTGACATTTTGT+GGG - chr1_4:29165521-29165540 Msa0159170:intron 25.0%
!! ACGTAAAATTCTTCTAAAGA+AGG + chr1_4:29165694-29165713 None:intergenic 25.0%
!!! ATCTTTTTTCTTTCTTTGGT+TGG - chr1_4:29165802-29165821 Msa0159170:intron 25.0%
! ATCTTGTAAGTATAAGAAGA+AGG + chr1_4:29166178-29166197 None:intergenic 25.0%
!!! AAGATTTTAATAGACGTGAA+GGG - chr1_4:29166193-29166212 Msa0159170:intron 25.0%
!!! CAATATAGCTTCAGTTTTTT+CGG + chr1_4:29166338-29166357 None:intergenic 25.0%
! AAAAACTGAAGCTATATTGA+AGG - chr1_4:29166339-29166358 Msa0159170:intron 25.0%
! AAAACTTGAAAGAGAATATG+TGG - chr1_4:29166374-29166393 Msa0159170:intron 25.0%
! AAACTTGAAAGAGAATATGT+GGG - chr1_4:29166375-29166394 Msa0159170:intron 25.0%
! TTGAGATGATGTCAAATAAA+TGG - chr1_4:29166557-29166576 Msa0159170:CDS 25.0%
! CACTCCTGAAAATTTATATA+AGG - chr1_4:29166605-29166624 Msa0159170:CDS 25.0%
! TAAGGATCTTATTAAGACAA+TGG - chr1_4:29166648-29166667 Msa0159170:CDS 25.0%
! AAGGATCTTATTAAGACAAT+GGG - chr1_4:29166649-29166668 Msa0159170:CDS 25.0%
! GTCATAAAAGTAGTAAACAT+TGG + chr1_4:29166799-29166818 None:intergenic 25.0%
!!! GTACTGATTAATGCATTAAT+AGG - chr1_4:29167181-29167200 Msa0159170:five_prime_UTR 25.0%
!!! ATAGGTTTTATGATTTCATG+GGG - chr1_4:29167199-29167218 Msa0159170:five_prime_UTR 25.0%
!! CTCCATTTCTAAAAAAAAAG+TGG - chr1_4:29167242-29167261 Msa0159170:five_prime_UTR 25.0%
!!! CACCACTTTTTTTTTAGAAA+TGG + chr1_4:29167247-29167266 None:intergenic 25.0%
! AATAGGAGTATAAGAGTAGA+AGG - chr1_4:29158957-29158976 Msa0159170:three_prime_UTR 30.0%
! ATAGGAGTATAAGAGTAGAA+GGG - chr1_4:29158958-29158977 Msa0159170:three_prime_UTR 30.0%
! TATAAGAGTAGAAGGGTTTT+TGG - chr1_4:29158965-29158984 Msa0159170:three_prime_UTR 30.0%
! ATAAGAGTAGAAGGGTTTTT+GGG - chr1_4:29158966-29158985 Msa0159170:three_prime_UTR 30.0%
!!! GTTTTTGGGTTTTGGTATTA+GGG - chr1_4:29158980-29158999 Msa0159170:three_prime_UTR 30.0%
! TGGAATTAATTTGACAGAAG+CGG + chr1_4:29159293-29159312 None:intergenic 30.0%
ATTAATTCCAAACACTTCAG+AGG - chr1_4:29159303-29159322 Msa0159170:CDS 30.0%
TGTATGATTTGATGAGAATC+AGG + chr1_4:29159343-29159362 None:intergenic 30.0%
TCCCATCTTATATTGTTTGA+TGG - chr1_4:29159905-29159924 Msa0159170:CDS 30.0%
GCCATCAAACAATATAAGAT+GGG + chr1_4:29159909-29159928 None:intergenic 30.0%
! AGAACCCTTTTAGATTGTTA+AGG + chr1_4:29160221-29160240 None:intergenic 30.0%
TCTTCTTGAAAAAGAGGAAA+GGG + chr1_4:29160269-29160288 None:intergenic 30.0%
TTCTTCTTGAAAAAGAGGAA+AGG + chr1_4:29160270-29160289 None:intergenic 30.0%
! GAGTTTTCTTCTTGAAAAAG+AGG + chr1_4:29160275-29160294 None:intergenic 30.0%
!! TGCTTCTTCGAATGTTTTAA+AGG + chr1_4:29160304-29160323 None:intergenic 30.0%
CTATACCAAACAATCTTAAG+TGG - chr1_4:29160590-29160609 Msa0159170:intron 30.0%
AATTATAATGGTTTGACCCA+TGG + chr1_4:29160633-29160652 None:intergenic 30.0%
AAACACTAAACCATTAGGTA+GGG + chr1_4:29160798-29160817 None:intergenic 30.0%
TAAACACTAAACCATTAGGT+AGG + chr1_4:29160799-29160818 None:intergenic 30.0%
!! TGGTAGTCATTTTCACATAT+GGG + chr1_4:29161022-29161041 None:intergenic 30.0%
!! ATGGTAGTCATTTTCACATA+TGG + chr1_4:29161023-29161042 None:intergenic 30.0%
!!! TCCTTTAGTTTTAGCCTTTT+AGG + chr1_4:29161101-29161120 None:intergenic 30.0%
! TGAATGAAGATTCGTTTTGA+AGG + chr1_4:29161349-29161368 None:intergenic 30.0%
ATCTTGCCTGAAGAAAAAAT+GGG + chr1_4:29161656-29161675 None:intergenic 30.0%
TATCTTGCCTGAAGAAAAAA+TGG + chr1_4:29161657-29161676 None:intergenic 30.0%
ATGAGGAATCTGATATTGAT+GGG + chr1_4:29161715-29161734 None:intergenic 30.0%
AATGAGGAATCTGATATTGA+TGG + chr1_4:29161716-29161735 None:intergenic 30.0%
!! ACAAGCATTGAAACATAATG+AGG + chr1_4:29161732-29161751 None:intergenic 30.0%
ATCATTGGATAATGCAACTT+TGG + chr1_4:29161777-29161796 None:intergenic 30.0%
!! CAACAATATGAAGCTGTTTT+TGG + chr1_4:29161827-29161846 None:intergenic 30.0%
CAAAAACAGCTTCATATTGT+TGG - chr1_4:29161825-29161844 Msa0159170:intron 30.0%
ATACAATAGCTTGATCAACA+AGG - chr1_4:29161873-29161892 Msa0159170:intron 30.0%
CATTGAATTGAATATTGACC+CGG + chr1_4:29162011-29162030 None:intergenic 30.0%
! TTTACTTGAAGTGTCAGATA+AGG + chr1_4:29162284-29162303 None:intergenic 30.0%
AGTGTCAAAGCTATAAGAAT+TGG + chr1_4:29162328-29162347 None:intergenic 30.0%
TAACTTGACATTGTGTGATA+TGG + chr1_4:29162509-29162528 None:intergenic 30.0%
ACAATGTCAAGTTAAGACTA+TGG - chr1_4:29162515-29162534 Msa0159170:intron 30.0%
TTGAGAAAGAAAAGGATCAT+TGG + chr1_4:29162683-29162702 None:intergenic 30.0%
AGAGGTCAATTAACAAATGA+GGG + chr1_4:29162849-29162868 None:intergenic 30.0%
TAGAGGTCAATTAACAAATG+AGG + chr1_4:29162850-29162869 None:intergenic 30.0%
CGTCTAGAAAATTTATCTCT+AGG - chr1_4:29162999-29163018 Msa0159170:intron 30.0%
! ATTGAGTTGTTAGCTACAAA+AGG + chr1_4:29163056-29163075 None:intergenic 30.0%
CATAGCATCAACATTATCAA+CGG - chr1_4:29163262-29163281 Msa0159170:intron 30.0%
ATAGCATCAACATTATCAAC+GGG - chr1_4:29163263-29163282 Msa0159170:intron 30.0%
TCAACATGACTATCATCAAT+AGG - chr1_4:29163320-29163339 Msa0159170:intron 30.0%
!!! AGTGTTGTTTACTAGGTTTT+TGG - chr1_4:29163824-29163843 Msa0159170:intron 30.0%
!! GTTTACTAGGTTTTTGGAAA+AGG - chr1_4:29163830-29163849 Msa0159170:intron 30.0%
AAACAAAACCTGAAAGAAGA+AGG - chr1_4:29164007-29164026 Msa0159170:intron 30.0%
TTTAATGTAGTGCATAGTAG+TGG - chr1_4:29164057-29164076 Msa0159170:intron 30.0%
TTAATGTAGTGCATAGTAGT+GGG - chr1_4:29164058-29164077 Msa0159170:intron 30.0%
AAAAAAATTATTGAGGCCCA+TGG - chr1_4:29164085-29164104 Msa0159170:intron 30.0%
! AGATATTACCAGTTTTCTTG+GGG - chr1_4:29164299-29164318 Msa0159170:intron 30.0%
!! TATCTTGTTTGTTTCTACGA+AGG + chr1_4:29164333-29164352 None:intergenic 30.0%
TATTCATGACTTTGCTTTAG+AGG + chr1_4:29164404-29164423 None:intergenic 30.0%
ATACATTGGATATACAACCT+GGG - chr1_4:29164465-29164484 Msa0159170:intron 30.0%
ACTCAATCAAAACACGATAT+AGG + chr1_4:29164578-29164597 None:intergenic 30.0%
!!! TATATCGTGTTTTGATTGAG+TGG - chr1_4:29164577-29164596 Msa0159170:intron 30.0%
TAGGAAGAAAAAGAGTAAAG+TGG + chr1_4:29164648-29164667 None:intergenic 30.0%
GATGATGAAAAGAAGAAGTT+TGG + chr1_4:29164729-29164748 None:intergenic 30.0%
AAAATCACCAGTAAACAAGT+GGG + chr1_4:29164751-29164770 None:intergenic 30.0%
AAAATGGAGTGGGTAAAAAA+TGG + chr1_4:29165475-29165494 None:intergenic 30.0%
!! TGATAATGGAAAAATGGAGT+GGG + chr1_4:29165485-29165504 None:intergenic 30.0%
!! TTGATAATGGAAAAATGGAG+TGG + chr1_4:29165486-29165505 None:intergenic 30.0%
TACTCCCAAAACTTTGATAA+TGG + chr1_4:29165499-29165518 None:intergenic 30.0%
ACCCTTCAAAACTATAGTAA+TGG - chr1_4:29165570-29165589 Msa0159170:intron 30.0%
!!! CCCATTACTATAGTTTTGAA+GGG + chr1_4:29165574-29165593 None:intergenic 30.0%
CCCTTCAAAACTATAGTAAT+GGG - chr1_4:29165571-29165590 Msa0159170:intron 30.0%
CCTTCAAAACTATAGTAATG+GGG - chr1_4:29165572-29165591 Msa0159170:intron 30.0%
!! TTTTACCTTGTTTATGCTTC+TGG - chr1_4:29165740-29165759 Msa0159170:intron 30.0%
! AATTCTCCTCTGAAAGAATT+TGG + chr1_4:29165959-29165978 None:intergenic 30.0%
TCTGGAAAATTTGAGGAAAA+CGG - chr1_4:29166012-29166031 Msa0159170:intron 30.0%
AGGAAACATTCAACAAAATG+AGG - chr1_4:29166035-29166054 Msa0159170:intron 30.0%
GGAAACATTCAACAAAATGA+GGG - chr1_4:29166036-29166055 Msa0159170:intron 30.0%
!! CAAGATTTTAATAGACGTGA+AGG - chr1_4:29166192-29166211 Msa0159170:intron 30.0%
TTATGAAAATGCCAAACTAC+CGG - chr1_4:29166936-29166955 Msa0159170:CDS 30.0%
!!! GGTTTTTGGGTTTTGGTATT+AGG - chr1_4:29158979-29158998 Msa0159170:three_prime_UTR 35.0%
! CTGAATTGTTATTAAGCCCT+TGG + chr1_4:29159258-29159277 None:intergenic 35.0%
CAAGGGCTTAATAACAATTC+AGG - chr1_4:29159256-29159275 Msa0159170:CDS 35.0%
ATTTGATGAGAATCAGGAAC+AGG + chr1_4:29159337-29159356 None:intergenic 35.0%
AATCACTTTCTTCAAGGAGA+CGG - chr1_4:29159611-29159630 Msa0159170:CDS 35.0%
AATTAAGCAGGCAAGAGATT+GGG - chr1_4:29159716-29159735 Msa0159170:CDS 35.0%
AAGGCGTAAAATGTATGGAA+GGG - chr1_4:29159759-29159778 Msa0159170:CDS 35.0%
GGCCATCAAACAATATAAGA+TGG + chr1_4:29159910-29159929 None:intergenic 35.0%
GTTAGAGGTAGAGAGAAATT+AGG - chr1_4:29159980-29159999 Msa0159170:CDS 35.0%
! GTTGATGGAGAAAAAAGTGT+GGG + chr1_4:29160041-29160060 None:intergenic 35.0%
!! AGTTGATGGAGAAAAAAGTG+TGG + chr1_4:29160042-29160061 None:intergenic 35.0%
TTCTTGAAAAAGAGGAAAGG+GGG + chr1_4:29160267-29160286 None:intergenic 35.0%
CTTCTTGAAAAAGAGGAAAG+GGG + chr1_4:29160268-29160287 None:intergenic 35.0%
AGATCCCACTTAAGATTGTT+TGG + chr1_4:29160598-29160617 None:intergenic 35.0%
ATCTCATGTTTGACAACCAT+GGG - chr1_4:29160614-29160633 Msa0159170:intron 35.0%
TTGATGTTTGATATCATGCC+AGG - chr1_4:29160853-29160872 Msa0159170:intron 35.0%
TGATGTTTGATATCATGCCA+GGG - chr1_4:29160854-29160873 Msa0159170:intron 35.0%
! GAATTAGTTCCTCTTGCTTT+TGG + chr1_4:29161071-29161090 None:intergenic 35.0%
GCCTAAAAGGCTAAAACTAA+AGG - chr1_4:29161097-29161116 Msa0159170:intron 35.0%
AGTTGTTGAAGTCTTACATG+CGG + chr1_4:29161508-29161527 None:intergenic 35.0%
CTTCGAAAAACTTCTTTCTG+CGG - chr1_4:29161532-29161551 Msa0159170:intron 35.0%
!!! ATAGGTCCCATTTTTTCTTC+AGG - chr1_4:29161647-29161666 Msa0159170:intron 35.0%
GAGAACTATATGTGGAGTTA+AGG + chr1_4:29161691-29161710 None:intergenic 35.0%
AAGAAAAAGGCAGTTTGATG+AGG + chr1_4:29161963-29161982 None:intergenic 35.0%
CGGGTCAATATTCAATTCAA+TGG - chr1_4:29162009-29162028 Msa0159170:intron 35.0%
TCTTTAGCAACACATGAACT+TGG + chr1_4:29162229-29162248 None:intergenic 35.0%
TTAAGACTATGGCAACTACA+AGG - chr1_4:29162526-29162545 Msa0159170:intron 35.0%
! GCAACTACAAGGAGTATAAA+AGG - chr1_4:29162537-29162556 Msa0159170:intron 35.0%
AACATCGAAGTGTACAAAAG+AGG + chr1_4:29162585-29162604 None:intergenic 35.0%
AGGCCAAATTATGTTTAGCA+AGG - chr1_4:29162619-29162638 Msa0159170:intron 35.0%
ATTGGTATGAATTGCGTCAA+AGG + chr1_4:29162749-29162768 None:intergenic 35.0%
! ACATTAGGAGCATGACTAAT+TGG + chr1_4:29162767-29162786 None:intergenic 35.0%
! TGTTAGACTTAAAGAGCATG+AGG + chr1_4:29162802-29162821 None:intergenic 35.0%
! TTTAGTGATTGGTCACATGT+TGG + chr1_4:29162825-29162844 None:intergenic 35.0%
!! CAAATGAGGGTTTTAGTGAT+TGG + chr1_4:29162836-29162855 None:intergenic 35.0%
! TTTAAAAGAGGGATTGGTAG+AGG + chr1_4:29162867-29162886 None:intergenic 35.0%
GAGAGAAATGTGATAGAGAT+TGG + chr1_4:29162941-29162960 None:intergenic 35.0%
! TATCGATGATAATGTTGCTG+TGG + chr1_4:29163204-29163223 None:intergenic 35.0%
TCAACATGAATGTCATCAAC+AGG - chr1_4:29163233-29163252 Msa0159170:intron 35.0%
TGAATGTCATCAACAGGAAT+AGG - chr1_4:29163239-29163258 Msa0159170:intron 35.0%
TTATCAACGGGAATATCAAC+AGG - chr1_4:29163275-29163294 Msa0159170:intron 35.0%
ATTTATCAAGAGCTCCTGTT+TGG - chr1_4:29163366-29163385 Msa0159170:intron 35.0%
TTTATCAAGAGCTCCTGTTT+GGG - chr1_4:29163367-29163386 Msa0159170:intron 35.0%
GAGTTAATTGAATCCCAAAC+AGG + chr1_4:29163383-29163402 None:intergenic 35.0%
CTCAAGAACAGAAGAATTTC+AGG + chr1_4:29163525-29163544 None:intergenic 35.0%
ACATTGTACGTCTAATGATG+TGG + chr1_4:29163572-29163591 None:intergenic 35.0%
TCATTAGACGTACAATGTTG+AGG - chr1_4:29163574-29163593 Msa0159170:intron 35.0%
!! ACCAAACAGTGTTGTTTACT+AGG - chr1_4:29163817-29163836 Msa0159170:intron 35.0%
ACCTAGTAAACAACACTGTT+TGG + chr1_4:29163821-29163840 None:intergenic 35.0%
TTGGAAAAGGAGAATCGATT+TGG - chr1_4:29163843-29163862 Msa0159170:intron 35.0%
!! AAGCCTTGATGATGGATTAA+TGG - chr1_4:29163888-29163907 Msa0159170:intron 35.0%
TCACCATTAATCCATCATCA+AGG + chr1_4:29163894-29163913 None:intergenic 35.0%
ATGATGCAGATTGCAGAAAT+CGG - chr1_4:29163921-29163940 Msa0159170:intron 35.0%
AACAAGCATAGCATGATACA+GGG + chr1_4:29164160-29164179 None:intergenic 35.0%
AAACAAGCATAGCATGATAC+AGG + chr1_4:29164161-29164180 None:intergenic 35.0%
CAGGTTGTATATCCAATGTA+TGG + chr1_4:29164466-29164485 None:intergenic 35.0%
CATACATTGGATATACAACC+TGG - chr1_4:29164464-29164483 Msa0159170:intron 35.0%
CAATCAAAACACGATATAGG+AGG + chr1_4:29164575-29164594 None:intergenic 35.0%
!!! TGTTTTGATTGAGTGGTCAT+TGG - chr1_4:29164584-29164603 Msa0159170:intron 35.0%
GAAAATCACCAGTAAACAAG+TGG + chr1_4:29164752-29164771 None:intergenic 35.0%
GCTGCATAAAACAGTATGAA+TGG + chr1_4:29165281-29165300 None:intergenic 35.0%
TAAGTTGTACCCATATCCTT+TGG - chr1_4:29165340-29165359 Msa0159170:intron 35.0%
ACCCATATCCTTTGGTATAT+TGG - chr1_4:29165348-29165367 Msa0159170:intron 35.0%
GCCAATATACCAAAGGATAT+GGG + chr1_4:29165352-29165371 None:intergenic 35.0%
!!! CCCCATTACTATAGTTTTGA+AGG + chr1_4:29165575-29165594 None:intergenic 35.0%
! TCAAAACTATAGTAATGGGG+AGG - chr1_4:29165575-29165594 Msa0159170:intron 35.0%
! ATAGTAATGGGGAGGAAAAA+TGG - chr1_4:29165583-29165602 Msa0159170:intron 35.0%
! GAATGGTTCGTTTCCTTTTT+GGG - chr1_4:29165637-29165656 Msa0159170:intron 35.0%
CATGTTCCAAATTCTTTCAG+AGG - chr1_4:29165950-29165969 Msa0159170:intron 35.0%
TTCAACAAAATGAGGGAGTT+AGG - chr1_4:29166043-29166062 Msa0159170:intron 35.0%
!! CGTGTTACTTATGATGGAAA+AGG - chr1_4:29166141-29166160 Msa0159170:intron 35.0%
GCCTGTCTAATGATATTGAT+GGG - chr1_4:29166215-29166234 Msa0159170:intron 35.0%
TCCCATCAATATCATTAGAC+AGG + chr1_4:29166219-29166238 None:intergenic 35.0%
GCTATATTGAAGGAGATTGA+AGG - chr1_4:29166349-29166368 Msa0159170:intron 35.0%
GAAGAAAATTGAAGAAGCAG+AGG - chr1_4:29166528-29166547 Msa0159170:CDS 35.0%
ATAAATGGAAACTTACTGCC+AGG - chr1_4:29166572-29166591 Msa0159170:CDS 35.0%
AAGGCATAAGATGCTAAACA+AGG - chr1_4:29166624-29166643 Msa0159170:CDS 35.0%
AGGCATAAGATGCTAAACAA+GGG - chr1_4:29166625-29166644 Msa0159170:CDS 35.0%
TAAGATGCTAAACAAGGGTA+AGG - chr1_4:29166630-29166649 Msa0159170:CDS 35.0%
ATTAAGACAATGGGAGATAG+TGG - chr1_4:29166658-29166677 Msa0159170:CDS 35.0%
TGTCTCTTTATGTTCAAGCA+GGG - chr1_4:29166716-29166735 Msa0159170:CDS 35.0%
AGAAAATCTTCTCTGCGTTA+TGG + chr1_4:29166855-29166874 None:intergenic 35.0%
! GAAACTGGAGTTTTCCTAAA+CGG + chr1_4:29167042-29167061 None:intergenic 35.0%
CAATCAAGCAAATCAGAAAC+TGG + chr1_4:29167057-29167076 None:intergenic 35.0%
!! GTTTCTGATTTGCTTGATTG+AGG - chr1_4:29167057-29167076 Msa0159170:intron 35.0%
CATTTGAAAAGTTGAAGCAC+AGG + chr1_4:29167100-29167119 None:intergenic 35.0%
!!! GTAGAAGGGTTTTTGGGTTT+TGG - chr1_4:29158972-29158991 Msa0159170:three_prime_UTR 40.0%
TCTGTGACCAACAAGTATGT+GGG - chr1_4:29159047-29159066 Msa0159170:three_prime_UTR 40.0%
! AGATTGATAACCTTAGCGTG+AGG + chr1_4:29159095-29159114 None:intergenic 40.0%
AATTCCAAACACTTCAGAGG+AGG - chr1_4:29159306-29159325 Msa0159170:CDS 40.0%
!!! ATCATCCTCATTTTGGCTAC+TGG + chr1_4:29159455-29159474 None:intergenic 40.0%
CTCCATGTCATCATGATCAT+CGG + chr1_4:29159479-29159498 None:intergenic 40.0%
TGAAGTAGACATCAATGAGC+TGG - chr1_4:29159552-29159571 Msa0159170:CDS 40.0%
AAGGCGATTGTAAGTGTTTC+AGG - chr1_4:29159646-29159665 Msa0159170:CDS 40.0%
GAATTAAGCAGGCAAGAGAT+TGG - chr1_4:29159715-29159734 Msa0159170:CDS 40.0%
! TGGCATTGAATAGTCTTCGA+AGG - chr1_4:29159740-29159759 Msa0159170:CDS 40.0%
! CTTCGAAGGCGTAAAATGTA+TGG - chr1_4:29159754-29159773 Msa0159170:CDS 40.0%
! GAAGGCGTAAAATGTATGGA+AGG - chr1_4:29159758-29159777 Msa0159170:CDS 40.0%
AGTCCTTAAGGAAGCTTCTA+CGG + chr1_4:29159932-29159951 None:intergenic 40.0%
CCTTTGATGAACAGTCCTTA+AGG + chr1_4:29159944-29159963 None:intergenic 40.0%
CCTTAAGGACTGTTCATCAA+AGG - chr1_4:29159941-29159960 Msa0159170:CDS 40.0%
AGTGCAAGATTGTGATATCG+TGG - chr1_4:29160114-29160133 Msa0159170:CDS 40.0%
GTGCAAGATTGTGATATCGT+GGG - chr1_4:29160115-29160134 Msa0159170:CDS 40.0%
TCTTGAAAAAGAGGAAAGGG+GGG + chr1_4:29160266-29160285 None:intergenic 40.0%
GATCTCATGTTTGACAACCA+TGG - chr1_4:29160613-29160632 Msa0159170:intron 40.0%
ATGAGCCAATCGCACATAAT+TGG - chr1_4:29160729-29160748 Msa0159170:intron 40.0%
CACATAATTGGCAGAGCAAT+GGG - chr1_4:29160741-29160760 Msa0159170:intron 40.0%
GGATATTTGACCCTACCTAA+TGG - chr1_4:29160785-29160804 Msa0159170:intron 40.0%
TGTTTATATCTGCCGCTATC+AGG - chr1_4:29160813-29160832 Msa0159170:intron 40.0%
!! TACAAGGTGCCGTATATATG+CGG - chr1_4:29160992-29161011 Msa0159170:intron 40.0%
ATGGGTGTACCGCATATATA+CGG + chr1_4:29161004-29161023 None:intergenic 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr1_4:29161060-29161079 None:intergenic 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG + chr1_4:29161064-29161083 None:intergenic 40.0%
!!! GGTTTTTTGTTGTGACTGCT+TGG + chr1_4:29161188-29161207 None:intergenic 40.0%
CAACAAAAAACCCACAAAGC+TGG - chr1_4:29161196-29161215 Msa0159170:intron 40.0%
TTGCTTCAGTAAATGCACGT+AGG + chr1_4:29161388-29161407 None:intergenic 40.0%
TGATGGGAGAGAACTATATG+TGG + chr1_4:29161699-29161718 None:intergenic 40.0%
TCTTCAGATTGCTCAACTGA+CGG - chr1_4:29161926-29161945 Msa0159170:intron 40.0%
GGCGCATAATTCGAAGAAAA+AGG + chr1_4:29161976-29161995 None:intergenic 40.0%
AACTTCTGTAGCATCATCCA+AGG - chr1_4:29162033-29162052 Msa0159170:intron 40.0%
!!! AACTGGTTTTAAGAAGGCCT+TGG + chr1_4:29162053-29162072 None:intergenic 40.0%
ATCATTGTCATCCACTCGTT+GGG + chr1_4:29162365-29162384 None:intergenic 40.0%
AATCATTGTCATCCACTCGT+TGG + chr1_4:29162366-29162385 None:intergenic 40.0%
! CGAGTGGATGACAATGATTT+TGG - chr1_4:29162367-29162386 Msa0159170:intron 40.0%
TGTCCATCTCTTAGTAGAGT+TGG - chr1_4:29162420-29162439 Msa0159170:intron 40.0%
TTGCCAACTCTACTAAGAGA+TGG + chr1_4:29162426-29162445 None:intergenic 40.0%
TGTGATATGGCTAACTCATG+TGG + chr1_4:29162496-29162515 None:intergenic 40.0%
! CAAGGAGTATAAAAGGCTCT+TGG - chr1_4:29162544-29162563 Msa0159170:intron 40.0%
CTTCGATGTTTACAGAACCA+CGG - chr1_4:29162595-29162614 Msa0159170:intron 40.0%
! AAACATAATTTGGCCTTCCG+TGG + chr1_4:29162615-29162634 None:intergenic 40.0%
TCGAGAGAATCCCAATTTCT+TGG - chr1_4:29163086-29163105 Msa0159170:intron 40.0%
TCAACAGGAATAGCATCAAC+AGG - chr1_4:29163290-29163309 Msa0159170:intron 40.0%
AGGACTAGAAAGTTTGAGTC+TGG + chr1_4:29163440-29163459 None:intergenic 40.0%
! GACTCAAACTTTCTAGTCCT+AGG - chr1_4:29163440-29163459 Msa0159170:intron 40.0%
! TCAAACTTTCTAGTCCTAGG+CGG - chr1_4:29163443-29163462 Msa0159170:intron 40.0%
AATCTAGGAGGAGCCAATTT+AGG - chr1_4:29163467-29163486 Msa0159170:intron 40.0%
TTCCTCTATGCCTCCTAAAT+TGG + chr1_4:29163483-29163502 None:intergenic 40.0%
AAGAAGGAAAGCCTTGATGA+TGG - chr1_4:29163880-29163899 Msa0159170:intron 40.0%
AAATTATTGAGGCCCATGGT+TGG - chr1_4:29164089-29164108 Msa0159170:intron 40.0%
AATTATTGAGGCCCATGGTT+GGG - chr1_4:29164090-29164109 Msa0159170:intron 40.0%
!! ACCAGTTTTCTTGGGGTATT+TGG - chr1_4:29164306-29164325 Msa0159170:intron 40.0%
ACCAAATACCCCAAGAAAAC+TGG + chr1_4:29164310-29164329 None:intergenic 40.0%
! TTTTGCAGTGAGCCATACAT+TGG - chr1_4:29164451-29164470 Msa0159170:intron 40.0%
TTTGATTGAGTGGTCATTGG+AGG - chr1_4:29164587-29164606 Msa0159170:intron 40.0%
TCATCATCCCACTTGTTTAC+TGG - chr1_4:29164741-29164760 Msa0159170:intron 40.0%
TGGGTACAACTTACAACACA+AGG + chr1_4:29165333-29165352 None:intergenic 40.0%
GGCCAATATACCAAAGGATA+TGG + chr1_4:29165353-29165372 None:intergenic 40.0%
! GGAATGGTTCGTTTCCTTTT+TGG - chr1_4:29165636-29165655 Msa0159170:intron 40.0%
CCTGCAATATATGCCCAAAA+AGG + chr1_4:29165653-29165672 None:intergenic 40.0%
!! CCTTTTTGGGCATATATTGC+AGG - chr1_4:29165650-29165669 Msa0159170:intron 40.0%
! TGGAACCAGAAGCATAAACA+AGG + chr1_4:29165748-29165767 None:intergenic 40.0%
CTTTCTTTGGTTGGAACTGT+AGG - chr1_4:29165811-29165830 Msa0159170:intron 40.0%
GATTTGATTGCCAAATTGCG+TGG - chr1_4:29165899-29165918 Msa0159170:intron 40.0%
! GGTATTTTTCTGCCTTTGGT+AGG + chr1_4:29165925-29165944 None:intergenic 40.0%
!! TCGAGGTATTTTTCTGCCTT+TGG + chr1_4:29165929-29165948 None:intergenic 40.0%
! AAGAATTTGGAACATGCTCG+AGG + chr1_4:29165946-29165965 None:intergenic 40.0%
! GTGCTAGTCTGGAAAATTTG+AGG - chr1_4:29166005-29166024 Msa0159170:intron 40.0%
GGAAAATTTGAGGAAAACGG+AGG - chr1_4:29166015-29166034 Msa0159170:intron 40.0%
TTGCAAGCAAATGCTGTAAC+AGG + chr1_4:29166073-29166092 None:intergenic 40.0%
!! AGCTGACGTGTTACTTATGA+TGG - chr1_4:29166135-29166154 Msa0159170:intron 40.0%
GGCCTGTCTAATGATATTGA+TGG - chr1_4:29166214-29166233 Msa0159170:intron 40.0%
GTTGAGACAATGAAGACAGA+AGG - chr1_4:29166250-29166269 Msa0159170:intron 40.0%
CATAAAGGCGAAGCAAAGTT+GGG + chr1_4:29166405-29166424 None:intergenic 40.0%
CTTCGCCTTTATGCAATTCT+GGG - chr1_4:29166412-29166431 Msa0159170:intron 40.0%
CCTTTATGCAATTCTGGGTA+GGG - chr1_4:29166417-29166436 Msa0159170:intron 40.0%
CTGATGAAGTGGAGAGAATT+TGG - chr1_4:29166440-29166459 Msa0159170:CDS 40.0%
TGAAGTGGAGAGAATTTGGA+AGG - chr1_4:29166444-29166463 Msa0159170:CDS 40.0%
TTGGAAGGTTTGTGAGTCAA+AGG - chr1_4:29166459-29166478 Msa0159170:CDS 40.0%
GTGTCTCTTTATGTTCAAGC+AGG - chr1_4:29166715-29166734 Msa0159170:CDS 40.0%
GTCTCTTTATGTTCAAGCAG+GGG - chr1_4:29166717-29166736 Msa0159170:CDS 40.0%
TTATGGAGCAGTATGCAAAG+AGG - chr1_4:29166821-29166840 Msa0159170:CDS 40.0%
TATGGAGCAGTATGCAAAGA+GGG - chr1_4:29166822-29166841 Msa0159170:CDS 40.0%
! TTCATGGGGTTCATTTGTTG+AGG - chr1_4:29167213-29167232 Msa0159170:five_prime_UTR 40.0%
CTCTGTGACCAACAAGTATG+TGG - chr1_4:29159046-29159065 Msa0159170:three_prime_UTR 45.0%
! GTAAATCTGTGGGAAGCATG+AGG + chr1_4:29159397-29159416 None:intergenic 45.0%
GGTGGTGAGAGTAAATCTGT+GGG + chr1_4:29159407-29159426 None:intergenic 45.0%
TGATGCCAGTAGCCAAAATG+AGG - chr1_4:29159447-29159466 Msa0159170:CDS 45.0%
! CATCGGCATCATCCTCATTT+TGG + chr1_4:29159462-29159481 None:intergenic 45.0%
TGCCGATGATCATGATGACA+TGG - chr1_4:29159474-29159493 Msa0159170:CDS 45.0%
TGAAGATCGATTGACTGAGC+CGG - chr1_4:29159501-29159520 Msa0159170:CDS 45.0%
CATCAATGAGCTGGAGTTGT+CGG - chr1_4:29159561-29159580 Msa0159170:CDS 45.0%
GAGACGGTCAGAACTATTCA+AGG - chr1_4:29159627-29159646 Msa0159170:CDS 45.0%
CTTGTCGAGAGCAGAATCAA+CGG + chr1_4:29159677-29159696 None:intergenic 45.0%
TTGATTCTGCTCTCGACAAG+TGG - chr1_4:29159677-29159696 Msa0159170:CDS 45.0%
TGATTCTGCTCTCGACAAGT+GGG - chr1_4:29159678-29159697 Msa0159170:CDS 45.0%
!! CTCGACAAGTGGGTTGAAAA+AGG - chr1_4:29159688-29159707 Msa0159170:CDS 45.0%
AATGTATGGAAGGGCTTTGC+AGG - chr1_4:29159768-29159787 Msa0159170:CDS 45.0%
GTCCTTAAGGAAGCTTCTAC+GGG + chr1_4:29159931-29159950 None:intergenic 45.0%
GAACGTGCACTTAACAAGCA+TGG + chr1_4:29160011-29160030 None:intergenic 45.0%
CTATTGAGCCTTAGTTTCCC+GGG + chr1_4:29160192-29160211 None:intergenic 45.0%
GCTATTGAGCCTTAGTTTCC+CGG + chr1_4:29160193-29160212 None:intergenic 45.0%
CTCTGCCAATTATGTGCGAT+TGG + chr1_4:29160737-29160756 None:intergenic 45.0%
GCACATAATTGGCAGAGCAA+TGG - chr1_4:29160740-29160759 Msa0159170:intron 45.0%
CTTTGTACTCAGCCTGATAG+CGG + chr1_4:29160828-29160847 None:intergenic 45.0%
CTATCAGGCTGAGTACAAAG+TGG - chr1_4:29160828-29160847 Msa0159170:intron 45.0%
! GTGGGGGTTGATCATGTATA+TGG + chr1_4:29161042-29161061 None:intergenic 45.0%
!!! TTGCTTTTGGTGTTAGGTGG+GGG + chr1_4:29161058-29161077 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + chr1_4:29161059-29161078 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr1_4:29161061-29161080 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr1_4:29161059-29161078 Msa0159170:intron 45.0%
! TTGCTGTTGCTGTGACTACT+TGG + chr1_4:29161233-29161252 None:intergenic 45.0%
CGAAAAACTTCTTTCTGCGG+AGG - chr1_4:29161535-29161554 Msa0159170:intron 45.0%
!! GCAACTTTGGAGTCTTGTTG+TGG + chr1_4:29161764-29161783 None:intergenic 45.0%
CTTCAGATTGCTCAACTGAC+GGG - chr1_4:29161927-29161946 Msa0159170:intron 45.0%
TTCAGATTGCTCAACTGACG+GGG - chr1_4:29161928-29161947 Msa0159170:intron 45.0%
CTTCGAATTATGCGCCTTTG+AGG - chr1_4:29161980-29161999 Msa0159170:intron 45.0%
! ATGCGCCTTTGAGGAAATAC+CGG - chr1_4:29161989-29162008 Msa0159170:intron 45.0%
TTGACCCGGTATTTCCTCAA+AGG + chr1_4:29161997-29162016 None:intergenic 45.0%
GATGTTTACAGAACCACGGA+AGG - chr1_4:29162599-29162618 Msa0159170:intron 45.0%
! TAAAGAGCATGAGGCAAGCT+CGG + chr1_4:29162793-29162812 None:intergenic 45.0%
! AGCCAATTTAGGAGGCATAG+AGG - chr1_4:29163478-29163497 Msa0159170:intron 45.0%
GTGGTTCAACTTCGACATTG+TGG + chr1_4:29163553-29163572 None:intergenic 45.0%
!! GGAGAATCGATTTGGTGTGA+AGG - chr1_4:29163851-29163870 Msa0159170:intron 45.0%
GGTGTGAAGGAAGAAGAAGA+AGG - chr1_4:29163864-29163883 Msa0159170:intron 45.0%
TTCCTCCATTCCATCACTCA+CGG + chr1_4:29163971-29163990 None:intergenic 45.0%
ATTATTGAGGCCCATGGTTG+GGG - chr1_4:29164091-29164110 Msa0159170:intron 45.0%
GCAAACAGCTCAACATAGCT+GGG + chr1_4:29164121-29164140 None:intergenic 45.0%
TGCAAACAGCTCAACATAGC+TGG + chr1_4:29164122-29164141 None:intergenic 45.0%
GAGAACTAATCACCCAACTG+TGG + chr1_4:29164245-29164264 None:intergenic 45.0%
GAGGTTTCGATTCTCGTACA+TGG + chr1_4:29164385-29164404 None:intergenic 45.0%
ATTGAGTGGTCATTGGAGGT+TGG - chr1_4:29164591-29164610 Msa0159170:intron 45.0%
TTGGTTGCCAAACCCCAATA+TGG - chr1_4:29164610-29164629 Msa0159170:intron 45.0%
TGGTTGCCAAACCCCAATAT+GGG - chr1_4:29164611-29164630 Msa0159170:intron 45.0%
AGCTTTCGTTCCCCATATTG+GGG + chr1_4:29164625-29164644 None:intergenic 45.0%
GAGCTTTCGTTCCCCATATT+GGG + chr1_4:29164626-29164645 None:intergenic 45.0%
GAGAGAGAGAGAGAATACTG+CGG + chr1_4:29164780-29164799 None:intergenic 45.0%
CAGGATGGCCAATATACCAA+AGG + chr1_4:29165359-29165378 None:intergenic 45.0%
TCAAAACTGCTACAGCAGGA+TGG + chr1_4:29165374-29165393 None:intergenic 45.0%
! ATCCTGCTGTAGCAGTTTTG+AGG - chr1_4:29165373-29165392 Msa0159170:intron 45.0%
AACCTCAAAACTGCTACAGC+AGG + chr1_4:29165378-29165397 None:intergenic 45.0%
!!! TGTAGCAGTTTTGAGGTTGC+CGG - chr1_4:29165380-29165399 Msa0159170:intron 45.0%
GTCATTCAATGCAGCTCTCT+GGG - chr1_4:29165407-29165426 Msa0159170:intron 45.0%
TCATTCAATGCAGCTCTCTG+GGG - chr1_4:29165408-29165427 Msa0159170:intron 45.0%
GGAGTGGGTAAAAAATGGAG+AGG + chr1_4:29165470-29165489 None:intergenic 45.0%
AATGGGGAGGAAAAATGGAG+AGG - chr1_4:29165588-29165607 Msa0159170:intron 45.0%
GTTTGACTCTAGCCAATCCA+AGG + chr1_4:29165837-29165856 None:intergenic 45.0%
ACTAGCTAACTGTGCTAGTC+TGG - chr1_4:29165994-29166013 Msa0159170:intron 45.0%
GTGAACCAGACCATCTAACA+CGG - chr1_4:29166275-29166294 Msa0159170:intron 45.0%
TGAACCAGACCATCTAACAC+GGG - chr1_4:29166276-29166295 Msa0159170:intron 45.0%
GCATAAAGGCGAAGCAAAGT+TGG + chr1_4:29166406-29166425 None:intergenic 45.0%
GCTTCGCCTTTATGCAATTC+TGG - chr1_4:29166411-29166430 Msa0159170:intron 45.0%
GCCTTTATGCAATTCTGGGT+AGG - chr1_4:29166416-29166435 Msa0159170:intron 45.0%
CCCTACCCAGAATTGCATAA+AGG + chr1_4:29166420-29166439 None:intergenic 45.0%
AGGTTTGTGAGTCAAAGGCA+CGG - chr1_4:29166464-29166483 Msa0159170:CDS 45.0%
CCTTGCTGCAATTGAAGCTT+GGG - chr1_4:29166498-29166517 Msa0159170:CDS 45.0%
CTTGCTGCAATTGAAGCTTG+GGG - chr1_4:29166499-29166518 Msa0159170:CDS 45.0%
!! GGAGATAGTGGATGCACAAT+AGG - chr1_4:29166670-29166689 Msa0159170:CDS 45.0%
CACAATAGGTCCAACAACCT+GGG - chr1_4:29166684-29166703 Msa0159170:CDS 45.0%
ATGGAGCAGTATGCAAAGAG+GGG - chr1_4:29166823-29166842 Msa0159170:CDS 45.0%
AATGCCAAACTACCGGCATA+TGG - chr1_4:29166943-29166962 Msa0159170:intron 45.0%
ATGCCAAACTACCGGCATAT+GGG - chr1_4:29166944-29166963 Msa0159170:intron 45.0%
!! CCAAAGCTTTGTTGGGGAAT+AGG + chr1_4:29166996-29167015 None:intergenic 45.0%
CCTATTCCCCAACAAAGCTT+TGG - chr1_4:29166993-29167012 Msa0159170:intron 45.0%
!! TTATTTATATATCATAATTA+CGG + chr1_4:29160504-29160523 None:intergenic 5.0%
CGAAGAGCCCACATACTTGT+TGG + chr1_4:29159057-29159076 None:intergenic 50.0%
!! ACAGCCTCCTCTGAAGTGTT+TGG + chr1_4:29159313-29159332 None:intergenic 50.0%
! TGTGGGAAGCATGAGGTATG+TGG + chr1_4:29159390-29159409 None:intergenic 50.0%
GGGTGGTGAGAGTAAATCTG+TGG + chr1_4:29159408-29159427 None:intergenic 50.0%
AGCCTGTGACGAAAGTTCAC+GGG + chr1_4:29159428-29159447 None:intergenic 50.0%
CAGCCTGTGACGAAAGTTCA+CGG + chr1_4:29159429-29159448 None:intergenic 50.0%
TGTCTACTTCAGCAGCGTCA+TGG + chr1_4:29159543-29159562 None:intergenic 50.0%
AAGCAGGCAAGAGATTGGGT+TGG - chr1_4:29159720-29159739 Msa0159170:CDS 50.0%
TCTCCATCAACTGTGCTGAG+CGG - chr1_4:29160050-29160069 Msa0159170:CDS 50.0%
CGGTGCAAAGATTGCTGGAT+GGG - chr1_4:29160070-29160089 Msa0159170:CDS 50.0%
GGTGACAAAACCTTCACCAC+CGG + chr1_4:29160161-29160180 None:intergenic 50.0%
! TTTTGTCACCTGACCTGACC+CGG - chr1_4:29160171-29160190 Msa0159170:CDS 50.0%
AAAGAGGAAAGGGGGGTTTC+TGG + chr1_4:29160259-29160278 None:intergenic 50.0%
AGCAGTCTCAGTTGCAGTCT+CGG - chr1_4:29160320-29160339 Msa0159170:CDS 50.0%
TCGGCTCAGGAAATGAGAAG+AGG - chr1_4:29160899-29160918 Msa0159170:intron 50.0%
!!! GGCTTTTGGTGGTTTTGTGC+AGG + chr1_4:29161136-29161155 None:intergenic 50.0%
! CTTTGTGAGCGCATGGCTTT+TGG + chr1_4:29161150-29161169 None:intergenic 50.0%
! TTCTGTGCTGCCAGCTTTGT+GGG + chr1_4:29161209-29161228 None:intergenic 50.0%
! GCACGTAGGAAGTCTCGTTT+TGG + chr1_4:29161374-29161393 None:intergenic 50.0%
! TGCGCCTTTGAGGAAATACC+GGG - chr1_4:29161990-29162009 Msa0159170:intron 50.0%
TACATGACTCTCCCAACGAG+TGG - chr1_4:29162351-29162370 Msa0159170:intron 50.0%
AGGCAAGCTCGGAACACATT+AGG + chr1_4:29162782-29162801 None:intergenic 50.0%
CTAGGAGGAGCCAATTTAGG+AGG - chr1_4:29163470-29163489 Msa0159170:intron 50.0%
TTCAGTGTTGCCGTGAGTGA+TGG - chr1_4:29163958-29163977 Msa0159170:intron 50.0%
! TGTTGCCGTGAGTGATGGAA+TGG - chr1_4:29163963-29163982 Msa0159170:intron 50.0%
AGCGCGTTCCTTCTTCTTTC+AGG + chr1_4:29164018-29164037 None:intergenic 50.0%
TTATTGAGGCCCATGGTTGG+GGG - chr1_4:29164092-29164111 Msa0159170:intron 50.0%
AGCATAGCATGATACAGGGC+CGG + chr1_4:29164156-29164175 None:intergenic 50.0%
GGTTGCCAAACCCCAATATG+GGG - chr1_4:29164612-29164631 Msa0159170:intron 50.0%
TCGTTCCCCATATTGGGGTT+TGG + chr1_4:29164620-29164639 None:intergenic 50.0%
GGAGCTTTCGTTCCCCATAT+TGG + chr1_4:29164627-29164646 None:intergenic 50.0%
CTGAAAGTTCAGCACAGAGG+TGG + chr1_4:29164706-29164725 None:intergenic 50.0%
TGGCTGAAAGTTCAGCACAG+AGG + chr1_4:29164709-29164728 None:intergenic 50.0%
!!! GTAGCAGTTTTGAGGTTGCC+GGG - chr1_4:29165381-29165400 Msa0159170:intron 50.0%
GCTGCATTGAATGACCAACC+CGG + chr1_4:29165402-29165421 None:intergenic 50.0%
GGTCATTCAATGCAGCTCTC+TGG - chr1_4:29165406-29165425 Msa0159170:intron 50.0%
TTGGTTGGAACTGTAGGCCT+TGG - chr1_4:29165817-29165836 Msa0159170:intron 50.0%
TGGAACTGTAGGCCTTGGAT+TGG - chr1_4:29165822-29165841 Msa0159170:intron 50.0%
CTTTGGTAGGCCACGCAATT+TGG + chr1_4:29165912-29165931 None:intergenic 50.0%
CAAATTGCGTGGCCTACCAA+AGG - chr1_4:29165910-29165929 Msa0159170:intron 50.0%
!! TTTTTCGGTAAGCCCAGCTG+CGG + chr1_4:29166323-29166342 None:intergenic 50.0%
! GGTTTGTGAGTCAAAGGCAC+GGG - chr1_4:29166465-29166484 Msa0159170:CDS 50.0%
GCCTTGCTGCAATTGAAGCT+TGG - chr1_4:29166497-29166516 Msa0159170:CDS 50.0%
CCCAAGCTTCAATTGCAGCA+AGG + chr1_4:29166501-29166520 None:intergenic 50.0%
!! CAGGAGTGCTTCGTAATTCC+TGG + chr1_4:29166593-29166612 None:intergenic 50.0%
GCACAATAGGTCCAACAACC+TGG - chr1_4:29166683-29166702 Msa0159170:CDS 50.0%
ACAAGTGCATCCCAGGTTGT+TGG + chr1_4:29166697-29166716 None:intergenic 50.0%
AAGAGACACAAGTGCATCCC+AGG + chr1_4:29166704-29166723 None:intergenic 50.0%
TCAAGCAGGGGAAGTCGAAA+AGG - chr1_4:29166729-29166748 Msa0159170:CDS 50.0%
! GGCAGACACTGTTTTGCAGA+AGG - chr1_4:29166750-29166769 Msa0159170:CDS 50.0%
TCCATTCCATGCTCTAGCAC+AGG - chr1_4:29166912-29166931 Msa0159170:CDS 50.0%
CATAAGCCTGTGCTAGAGCA+TGG + chr1_4:29166921-29166940 None:intergenic 50.0%
GATCCCATATGCCGGTAGTT+TGG + chr1_4:29166950-29166969 None:intergenic 50.0%
AACTACCGGCATATGGGATC+AGG - chr1_4:29166950-29166969 Msa0159170:intron 50.0%
ACTACCGGCATATGGGATCA+GGG - chr1_4:29166951-29166970 Msa0159170:intron 50.0%
!! TGGGCAGCCAAAGCTTTGTT+GGG + chr1_4:29167003-29167022 None:intergenic 50.0%
TGGCGCAACTTGATCCGTTT+AGG - chr1_4:29167025-29167044 Msa0159170:intron 50.0%
CTTCTGTTCGCCTCACGCTA+AGG - chr1_4:29159082-29159101 Msa0159170:three_prime_UTR 55.0%
AGCATGAGGTATGTGGCGGT+CGG + chr1_4:29159383-29159402 None:intergenic 55.0%
! GGGAAGCATGAGGTATGTGG+CGG + chr1_4:29159387-29159406 None:intergenic 55.0%
CTGTGACGAAAGTTCACGGG+TGG + chr1_4:29159425-29159444 None:intergenic 55.0%
CACCCGTGAACTTTCGTCAC+AGG - chr1_4:29159423-29159442 Msa0159170:CDS 55.0%
TTGACTGAGCCGGATGCAGA+CGG - chr1_4:29159511-29159530 Msa0159170:CDS 55.0%
TGGCTATCTCCGTCTGCATC+CGG + chr1_4:29159523-29159542 None:intergenic 55.0%
GGCCCGTAGAAGCTTCCTTA+AGG - chr1_4:29159926-29159945 Msa0159170:CDS 55.0%
CTGAGCGGTGCAAAGATTGC+TGG - chr1_4:29160065-29160084 Msa0159170:CDS 55.0%
GCGGTGCAAAGATTGCTGGA+TGG - chr1_4:29160069-29160088 Msa0159170:CDS 55.0%
GCAAAGATTGCTGGATGGGC+TGG - chr1_4:29160074-29160093 Msa0159170:CDS 55.0%
GCAGCACTCTTCTCTTGCAC+CGG - chr1_4:29160139-29160158 Msa0159170:CDS 55.0%
! TTCTCTTGCACCGGTGGTGA+AGG - chr1_4:29160148-29160167 Msa0159170:CDS 55.0%
TTTGTCACCTGACCTGACCC+GGG - chr1_4:29160172-29160191 Msa0159170:CDS 55.0%
TTAGTTTCCCGGGTCAGGTC+AGG + chr1_4:29160182-29160201 None:intergenic 55.0%
TGACCTGACCCGGGAAACTA+AGG - chr1_4:29160181-29160200 Msa0159170:CDS 55.0%
! GAAAGGGGGGTTTCTGGATC+GGG + chr1_4:29160253-29160272 None:intergenic 55.0%
! GGAAAGGGGGGTTTCTGGAT+CGG + chr1_4:29160254-29160273 None:intergenic 55.0%
! TGTGAGCGCATGGCTTTTGG+TGG + chr1_4:29161147-29161166 None:intergenic 55.0%
AAGCCATGCGCTCACAAAGC+TGG - chr1_4:29161151-29161170 Msa0159170:intron 55.0%
CTTCTGTGCTGCCAGCTTTG+TGG + chr1_4:29161210-29161229 None:intergenic 55.0%
! AGTCTGGTGCTGAGAAGCGT+AGG + chr1_4:29163424-29163443 None:intergenic 55.0%
CTAGTCCTAGGCGGCAATCT+AGG - chr1_4:29163452-29163471 Msa0159170:intron 55.0%
! TGCCGTGAGTGATGGAATGG+AGG - chr1_4:29163966-29163985 Msa0159170:intron 55.0%
CCAGTGGGCAATGGCACAAT+AGG + chr1_4:29164667-29164686 None:intergenic 55.0%
! CCTATTGTGCCATTGCCCAC+TGG - chr1_4:29164664-29164683 Msa0159170:intron 55.0%
GCAGTAGGGTTTCGTCCAGT+GGG + chr1_4:29164682-29164701 None:intergenic 55.0%
TGCAGTAGGGTTTCGTCCAG+TGG + chr1_4:29164683-29164702 None:intergenic 55.0%
AGCACAGAGGTGGTGCAGTA+GGG + chr1_4:29164696-29164715 None:intergenic 55.0%
GAGAGAGAATACTGCGGCTC+AGG + chr1_4:29164774-29164793 None:intergenic 55.0%
!!! CAGTTTTGAGGTTGCCGGGT+TGG - chr1_4:29165385-29165404 Msa0159170:intron 55.0%
AGGATCCCAACTCGTCTGCA+GGG - chr1_4:29165608-29165627 Msa0159170:intron 55.0%
GATGCCCGTGTTAGATGGTC+TGG + chr1_4:29166283-29166302 None:intergenic 55.0%
CCAAGGATGCCCGTGTTAGA+TGG + chr1_4:29166288-29166307 None:intergenic 55.0%
CCATCTAACACGGGCATCCT+TGG - chr1_4:29166285-29166304 Msa0159170:intron 55.0%
TCTGGGTAGGGCTGATGAAG+TGG - chr1_4:29166429-29166448 Msa0159170:CDS 55.0%
! TGAGTCAAAGGCACGGGTTG+AGG - chr1_4:29166471-29166490 Msa0159170:CDS 55.0%
GCCTGTGCTAGAGCATGGAA+TGG + chr1_4:29166916-29166935 None:intergenic 55.0%
CTCTCCCTGATCCCATATGC+CGG + chr1_4:29166958-29166977 None:intergenic 55.0%
!! GGGCAGCCAAAGCTTTGTTG+GGG + chr1_4:29167002-29167021 None:intergenic 55.0%
! CTGGGCAGCCAAAGCTTTGT+TGG + chr1_4:29167004-29167023 None:intergenic 55.0%
! CAAAGCTTTGGCTGCCCAGT+TGG - chr1_4:29167005-29167024 Msa0159170:intron 55.0%
! CGGATCAAGTTGCGCCAACT+GGG + chr1_4:29167022-29167041 None:intergenic 55.0%
! ACGGATCAAGTTGCGCCAAC+TGG + chr1_4:29167023-29167042 None:intergenic 55.0%
GCACCGCTCAGCACAGTTGA+TGG + chr1_4:29160056-29160075 None:intergenic 60.0%
GCACTCTTCTCTTGCACCGG+TGG - chr1_4:29160142-29160161 Msa0159170:CDS 60.0%
GAGCCTTAGTTTCCCGGGTC+AGG + chr1_4:29160187-29160206 None:intergenic 60.0%
AGCCTCCGAATTCTCGGGGA+CGG + chr1_4:29160880-29160899 None:intergenic 60.0%
TCCCCGAGAATTCGGAGGCT+CGG - chr1_4:29160880-29160899 Msa0159170:intron 60.0%
AGCCGAGCCTCCGAATTCTC+GGG + chr1_4:29160885-29160904 None:intergenic 60.0%
GAGCCGAGCCTCCGAATTCT+CGG + chr1_4:29160886-29160905 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+AGG - chr1_4:29160886-29160905 Msa0159170:intron 60.0%
! CTGCCAGCTTTGTGAGCGCA+TGG + chr1_4:29161157-29161176 None:intergenic 60.0%
TCTGCGGAGGCAACTGTCAC+CGG - chr1_4:29161548-29161567 Msa0159170:intron 60.0%
GTCCTAGGCGGCAATCTAGG+AGG - chr1_4:29163455-29163474 Msa0159170:intron 60.0%
CTCCTCCTAGATTGCCGCCT+AGG + chr1_4:29163460-29163479 None:intergenic 60.0%
ATGATACAGGGCCGGCCATG+GGG + chr1_4:29164148-29164167 None:intergenic 60.0%
CATGATACAGGGCCGGCCAT+GGG + chr1_4:29164149-29164168 None:intergenic 60.0%
GGGTTTCGTCCAGTGGGCAA+TGG + chr1_4:29164676-29164695 None:intergenic 60.0%
CAGCACAGAGGTGGTGCAGT+AGG + chr1_4:29164697-29164716 None:intergenic 60.0%
GAGGATCCCAACTCGTCTGC+AGG - chr1_4:29165607-29165626 Msa0159170:intron 60.0%
GGATCCCAACTCGTCTGCAG+GGG - chr1_4:29165609-29165628 Msa0159170:intron 60.0%
CTCTCCCCTGCAGACGAGTT+GGG + chr1_4:29165616-29165635 None:intergenic 60.0%
CAACTCGTCTGCAGGGGAGA+GGG - chr1_4:29165615-29165634 Msa0159170:intron 60.0%
TAACACGGGCATCCTTGGCC+AGG - chr1_4:29166290-29166309 Msa0159170:intron 60.0%
TGCGGCATAATGCCTGGCCA+AGG + chr1_4:29166305-29166324 None:intergenic 60.0%
CCAGGCATTATGCCGCAGCT+GGG - chr1_4:29166308-29166327 Msa0159170:intron 60.0%
CGGCATATGGGATCAGGGAG+AGG - chr1_4:29166956-29166975 Msa0159170:intron 60.0%
CAGGGCCGTCCCCGAGAATT+CGG - chr1_4:29160872-29160891 Msa0159170:intron 65.0%
GCCGAGCCTCCGAATTCTCG+GGG + chr1_4:29160884-29160903 None:intergenic 65.0%
TTGAGGCCCATGGTTGGGGG+AGG - chr1_4:29164095-29164114 Msa0159170:intron 65.0%
GAGCTGTTTGCACCCCCCCA+TGG - chr1_4:29164130-29164149 Msa0159170:intron 65.0%
TGTTTGCACCCCCCCATGGC+CGG - chr1_4:29164134-29164153 Msa0159170:intron 65.0%
TGATACAGGGCCGGCCATGG+GGG + chr1_4:29164147-29164166 None:intergenic 65.0%
GCATGATACAGGGCCGGCCA+TGG + chr1_4:29164150-29164169 None:intergenic 65.0%
CCTCTCCCCTGCAGACGAGT+TGG + chr1_4:29165617-29165636 None:intergenic 65.0%
CCAACTCGTCTGCAGGGGAG+AGG - chr1_4:29165614-29165633 Msa0159170:intron 65.0%
CGTCTGCAGGGGAGAGGGAA+TGG - chr1_4:29165620-29165639 Msa0159170:intron 65.0%
GCCAGGCATTATGCCGCAGC+TGG - chr1_4:29166307-29166326 Msa0159170:intron 65.0%
CCCAGCTGCGGCATAATGCC+TGG + chr1_4:29166311-29166330 None:intergenic 65.0%
!! GCTGGATGGGCTGGTGCGAG+TGG - chr1_4:29160083-29160102 Msa0159170:CDS 70.0%
CGAATTCTCGGGGACGGCCC+TGG + chr1_4:29160874-29160893 None:intergenic 70.0%
GGCCGTCCCCGAGAATTCGG+AGG - chr1_4:29160875-29160894 Msa0159170:intron 70.0%
GCTGGGCCTCCCCCAACCAT+GGG + chr1_4:29164104-29164123 None:intergenic 70.0%
AGCTGGGCCTCCCCCAACCA+TGG + chr1_4:29164105-29164124 None:intergenic 70.0%
ATACAGGGCCGGCCATGGGG+GGG + chr1_4:29164145-29164164 None:intergenic 70.0%
GATACAGGGCCGGCCATGGG+GGG + chr1_4:29164146-29164165 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 29158946 29167266 29158946 ID=Msa0159170;Name=Msa0159170
chr1_4 mRNA 29158946 29167266 29158946 ID=Msa0159170-mRNA-1;Parent=Msa0159170;Name=Msa0159170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=117|1|1|1|1|1|3|189|607
chr1_4 exon 29158946 29160379 29158946 ID=Msa0159170-mRNA-1:exon:9436;Parent=Msa0159170-mRNA-1
chr1_4 exon 29166423 29166960 29166423 ID=Msa0159170-mRNA-1:exon:9435;Parent=Msa0159170-mRNA-1
chr1_4 exon 29167109 29167266 29167109 ID=Msa0159170-mRNA-1:exon:9434;Parent=Msa0159170-mRNA-1
chr1_4 five_prime_UTR 29167150 29167266 29167150 ID=Msa0159170-mRNA-1:five_prime_utr;Parent=Msa0159170-mRNA-1
chr1_4 CDS 29167109 29167149 29167109 ID=Msa0159170-mRNA-1:cds;Parent=Msa0159170-mRNA-1
chr1_4 CDS 29166423 29166960 29166423 ID=Msa0159170-mRNA-1:cds;Parent=Msa0159170-mRNA-1
chr1_4 CDS 29159135 29160379 29159135 ID=Msa0159170-mRNA-1:cds;Parent=Msa0159170-mRNA-1
chr1_4 three_prime_UTR 29158946 29159134 29158946 ID=Msa0159170-mRNA-1:three_prime_utr;Parent=Msa0159170-mRNA-1
Gene Sequence

>Msa0159170

ATGTGGGCTCTTCGCAGAACTTCTGTTCGCCTCACGCTAAGAAACCAAGGGCTTAATAACAATTCAGGAATTTCTCGTGCCGCTTCTGTCAAATTAATTCCAAACACTTCAGAGGAGGCTGTTCCTGTTCCTGATTCTCATCAAATCATACATGCTCGATTTCTGACAACCGACCGCCACATACCTCATGCTTCCCACAGATTTACTCTCACCACCCGTGAACTTTCGTCACAGGCTGATGCCAGTAGCCAAAATGAGGATGATGCCGATGATCATGATGACATGGAGATTGAAGATCGATTGACTGAGCCGGATGCAGACGGAGATAGCCATGACGCTGCTGAAGTAGACATCAATGAGCTGGAGTTGTCGGATACTGAGACTGATTCATCTGACAAAAAATCACTTTCTTCAAGGAGACGGTCAGAACTATTCAAGGCGATTGTAAGTGTTTCAGGTTTGTCCGTTGATTCTGCTCTCGACAAGTGGGTTGAAAAAGGTAAAGAATTAAGCAGGCAAGAGATTGGGTTGGCATTGAATAGTCTTCGAAGGCGTAAAATGTATGGAAGGGCTTTGCAGGCCTTGGATTGGCTAGAGTCAAACAAAAAGCTTGAATTTACTGAGAAAGAGTATGCTTCTAAACTTGATTTGATTGCCAAATTGCGTGGCCTACCAAAGGCAGAAAAATACCTCGAGCATGTTCCAAATTCTTTCAGAGGAGAATTATTATACAGAACATTACTAGCTAACTGTGCTAGTCTGGAAAATTTGAGGAAAACGGAGGAAACATTCAACAAAATGAGGGAGTTAGGTCTTCCTGTTACAGCATTTGCTTGCAATCAGTTGCTTCTCATTTATAAGAAGATTGACAAGAAGAAAATAGCTGACGTGTTACTTATGATGGAAAAGGAGAATGTCAAACCTTCTTCTTATACTTACAAGATTTTAATAGACGTGAAGGGCCTGTCTAATGATATTGATGGGATGTCTCAAATTGTTGAGACAATGAAGACAGAAGGTTGTGAACCAGACCATCTAACACGGGCATCCTTGGCCAGGCATTATGCCGCAGCTGGGCTTACCGAAAAAACTGAAGCTATATTGAAGGAGATTGAAGGTGAAAACTTGAAAGAGAATATGTGGGTATGCCCAACTTTGCTTCGCCTTTATGCAATTCTGGGTAGGGCTGATGAAGTGGAGAGAATTTGGAAGGTTTGTGAGTCAAAGGCACGGGTTGAGGACTGCCTTGCTGCAATTGAAGCTTGGGGAAGATTGAAGAAAATTGAAGAAGCAGAGGCAGTTTTTGAGATGATGTCAAATAAATGGAAACTTACTGCCAGGAATTACGAAGCACTCCTGAAAATTTATATAAGGCATAAGATGCTAAACAAGGGTAAGGATCTTATTAAGACAATGGGAGATAGTGGATGCACAATAGGTCCAACAACCTGGGATGCACTTGTGTCTCTTTATGTTCAAGCAGGGGAAGTCGAAAAGGCAGACACTGTTTTGCAGAAGGCACTACAGCAAAATAAGATGAAGCCAATGTTTACTACTTTTATGACTATTATGGAGCAGTATGCAAAGAGGGGCGACGTCCATAACGCAGAGAAGATTTTCTATAGATTGAGACAAGCTAATTATATTTCTAGAATATCTCCATTCCATGCTCTAGCACAGGCTTATGAAAATGCCAAACTACCGGCATATGGGATCAGGGAGAGGATGAAAGCTGATAACCTATTCCCCAACAAAGCTTTGGCTGCCCAGTTGGCGCAACTTGATCCGTTTAGGAAAACTCCAGTTTCTGATTTGCTTGATTGA
Protein sequence

>Msa0159170

MWALRRTSVRLTLRNQGLNNNSGISRAASVKLIPNTSEEAVPVPDSHQIIHARFLTTDRHIPHASHRFTLTTRELSSQADASSQNEDDADDHDDMEIEDRLTEPDADGDSHDAAEVDINELELSDTETDSSDKKSLSSRRRSELFKAIVSVSGLSVDSALDKWVEKGKELSRQEIGLALNSLRRRKMYGRALQALDWLESNKKLEFTEKEYASKLDLIAKLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGLPVTAFACNQLLLIYKKIDKKKIADVLLMMEKENVKPSSYTYKILIDVKGLSNDIDGMSQIVETMKTEGCEPDHLTRASLARHYAAAGLTEKTEAILKEIEGENLKENMWVCPTLLRLYAILGRADEVERIWKVCESKARVEDCLAAIEAWGRLKKIEEAEAVFEMMSNKWKLTARNYEALLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYVQAGEVEKADTVLQKALQQNKMKPMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANYISRISPFHALAQAYENAKLPAYGIRERMKADNLFPNKALAAQLAQLDPFRKTPVSDLLD*