AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647500 MtrunA17_Chr4g0038621 100.000 71 0 0 1 71 1 71 1.29e-49 150
Msa0647500 MtrunA17_Chr5g0413401 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0647500 MtrunA17_Chr5g0413391 74.576 59 15 0 13 71 38 96 4.80e-29 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647500 AT1G61700.1 87.324 71 9 0 1 71 1 71 2.76e-44 137
Msa0647500 AT1G11475.1 88.732 71 8 0 1 71 1 71 9.87e-44 135

Find 34 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGGAACGAAAAGTGTTTC+AGG 0.227287 4_3:-53623975 None:intergenic
CTGCTTGGAAAACTATTTAA+AGG 0.236886 4_3:-53626001 None:intergenic
AAACAAATGGGACTCTTATC+TGG 0.263347 4_3:+53624258 Msa0647500:CDS
GTCTGGTTCGGTATTGTTGC+AGG 0.287322 4_3:+53625772 Msa0647500:CDS
CACTGACCCTTCAGTGTAAT+CGG 0.370692 4_3:-53624293 None:intergenic
GGTAATCAGTAGTTCCTAAC+TGG 0.371023 4_3:-53625947 None:intergenic
ATTAGGTCATTGGAAACAAA+TGG 0.395280 4_3:+53624245 Msa0647500:intron
CAGTTATAGCTAGTAAAGTT+AGG 0.411822 4_3:+53626021 Msa0647500:three_prime_UTR
GCAACGTAACCGACATATCT+TGG 0.430955 4_3:-53625968 None:intergenic
GGAGAAGGCTGAAGCCAGTT+AGG 0.431342 4_3:+53625933 Msa0647500:CDS
TGCACTGGATGCGTTGGGTC+TGG 0.462184 4_3:+53625755 Msa0647500:CDS
TGGAAAACTATTTAAAGGAC+AGG 0.467009 4_3:-53625996 None:intergenic
CTCAAGAATTTGTCTTATGT+CGG 0.476787 4_3:-53623993 None:intergenic
TGGATGCGTTGGGTCTGGTT+CGG 0.497757 4_3:+53625760 Msa0647500:CDS
CCCGTTCGTTGTTTCACTTG+TGG 0.498971 4_3:+53624073 Msa0647500:CDS
CTTTACTAGCTATAACTGCT+TGG 0.514576 4_3:-53626016 None:intergenic
TATGGATTGCAGAGATGCAC+TGG 0.517566 4_3:+53625740 Msa0647500:intron
CTTCAAGCCGATTACACTGA+AGG 0.518538 4_3:+53624286 Msa0647500:CDS
CCACAAGTGAAACAACGAAC+GGG 0.522867 4_3:-53624073 None:intergenic
CAGAGATGCACTGGATGCGT+TGG 0.526584 4_3:+53625749 Msa0647500:intron
TCGTTGTTTCACTTGTGGAA+AGG 0.534289 4_3:+53624078 Msa0647500:CDS
GTGTCTTGAGCGGAGAAACA+AGG 0.540566 4_3:+53624029 Msa0647500:five_prime_UTR
TTAGGTCATTGGAAACAAAT+GGG 0.545252 4_3:+53624246 Msa0647500:intron
TTCAAGCCGATTACACTGAA+GGG 0.552047 4_3:+53624287 Msa0647500:CDS
AGAGATGCACTGGATGCGTT+GGG 0.559881 4_3:+53625750 Msa0647500:intron
TTTGCTTGCAGCTATGGAGA+AGG 0.578496 4_3:+53625918 Msa0647500:intron
CGACATAAGACAAATTCTTG+AGG 0.597109 4_3:+53623994 Msa0647500:five_prime_UTR
TCCACAAGTGAAACAACGAA+CGG 0.616533 4_3:-53624074 None:intergenic
TACTGATTACCAAGATATGT+CGG 0.624490 4_3:+53625959 Msa0647500:three_prime_UTR
TTATAGCTAGTAAAGTTAGG+AGG 0.648294 4_3:+53626024 Msa0647500:three_prime_UTR
GTTTCTCAATGAGATCAACA+TGG 0.660440 4_3:-53625809 None:intergenic
GGAAAACTATTTAAAGGACA+GGG 0.664065 4_3:-53625995 None:intergenic
TTTCTCAATGAGATCAACAT+GGG 0.669562 4_3:-53625808 None:intergenic
AGTTCTAGCAGTGTCTTGAG+CGG 0.669580 4_3:+53624019 Msa0647500:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTCTTAAAACCTTA+GGG + chr4_3:53624497-53624516 Msa0647500:intron 15.0%
!!! TTACACAAAGTAAAATTTTA+AGG - chr4_3:53624577-53624596 None:intergenic 15.0%
!! AATTAAAAACTACAATTTAC+AGG - chr4_3:53624630-53624649 None:intergenic 15.0%
!!! CAATAGTTTATTTTTTGAAA+CGG - chr4_3:53625431-53625450 None:intergenic 15.0%
!! AAGAGATATAGTATATTTAA+GGG - chr4_3:53625653-53625672 None:intergenic 15.0%
!! AAAGAGATATAGTATATTTA+AGG - chr4_3:53625654-53625673 None:intergenic 15.0%
!!! AAATTTTTCTTAAAACCTTA+GGG + chr4_3:53624497-53624516 Msa0647500:intron 15.0%
!!! TTACACAAAGTAAAATTTTA+AGG - chr4_3:53624577-53624596 None:intergenic 15.0%
!! AATTAAAAACTACAATTTAC+AGG - chr4_3:53624630-53624649 None:intergenic 15.0%
!!! CAATAGTTTATTTTTTGAAA+CGG - chr4_3:53625431-53625450 None:intergenic 15.0%
!! AAGAGATATAGTATATTTAA+GGG - chr4_3:53625653-53625672 None:intergenic 15.0%
!! AAAGAGATATAGTATATTTA+AGG - chr4_3:53625654-53625673 None:intergenic 15.0%
!!! TTAAACGCTTTTCAAATTTA+GGG + chr4_3:53624182-53624201 Msa0647500:intron 20.0%
!! ACGAAAATAAACAAGTATTA+GGG - chr4_3:53624437-53624456 None:intergenic 20.0%
!! TACGAAAATAAACAAGTATT+AGG - chr4_3:53624438-53624457 None:intergenic 20.0%
!!! GAAATTTTTCTTAAAACCTT+AGG + chr4_3:53624496-53624515 Msa0647500:intron 20.0%
!!! TTTTAAGGTAAAATATCAAG+TGG - chr4_3:53624562-53624581 None:intergenic 20.0%
!!! AATTACTGTTGTTGTTTAAT+TGG + chr4_3:53624734-53624753 Msa0647500:intron 20.0%
!!! TGATCAAATTTTTAATGACA+AGG + chr4_3:53624886-53624905 Msa0647500:intron 20.0%
!! CAATGATTAAATTTATGTCT+TGG + chr4_3:53624949-53624968 Msa0647500:intron 20.0%
!! CGTTTCAAAAAATAAACTAT+TGG + chr4_3:53625429-53625448 Msa0647500:intron 20.0%
!! AATTTAAACTAATATTTGCC+AGG - chr4_3:53625698-53625717 None:intergenic 20.0%
!! ATTTCGTAGTATTATCATAA+TGG + chr4_3:53625715-53625734 Msa0647500:intron 20.0%
!!! TTAAACGCTTTTCAAATTTA+GGG + chr4_3:53624182-53624201 Msa0647500:intron 20.0%
!! ACGAAAATAAACAAGTATTA+GGG - chr4_3:53624437-53624456 None:intergenic 20.0%
!! TACGAAAATAAACAAGTATT+AGG - chr4_3:53624438-53624457 None:intergenic 20.0%
!!! GAAATTTTTCTTAAAACCTT+AGG + chr4_3:53624496-53624515 Msa0647500:intron 20.0%
!!! TTTTAAGGTAAAATATCAAG+TGG - chr4_3:53624562-53624581 None:intergenic 20.0%
!!! AATTACTGTTGTTGTTTAAT+TGG + chr4_3:53624734-53624753 Msa0647500:intron 20.0%
!!! TGATCAAATTTTTAATGACA+AGG + chr4_3:53624886-53624905 Msa0647500:intron 20.0%
!! CAATGATTAAATTTATGTCT+TGG + chr4_3:53624949-53624968 Msa0647500:intron 20.0%
!! CGTTTCAAAAAATAAACTAT+TGG + chr4_3:53625429-53625448 Msa0647500:intron 20.0%
!! AATTTAAACTAATATTTGCC+AGG - chr4_3:53625698-53625717 None:intergenic 20.0%
!! ATTTCGTAGTATTATCATAA+TGG + chr4_3:53625715-53625734 Msa0647500:intron 20.0%
!! GTTAAACGCTTTTCAAATTT+AGG + chr4_3:53624181-53624200 Msa0647500:intron 25.0%
! GAAATAAGAAGAAAAGAGAA+AGG - chr4_3:53624326-53624345 None:intergenic 25.0%
!! ATTAGCATGATTCTTTTCTT+AGG - chr4_3:53624474-53624493 None:intergenic 25.0%
! AAGAAAAGAATCATGCTAAT+TGG + chr4_3:53624474-53624493 Msa0647500:intron 25.0%
! ACTTTGTGTAATAGATATTG+TGG + chr4_3:53624586-53624605 Msa0647500:intron 25.0%
! TAATAGATATTGTGGAATAG+AGG + chr4_3:53624594-53624613 Msa0647500:intron 25.0%
!!! TGTTGTTGTTTAATTGGTTA+GGG + chr4_3:53624740-53624759 Msa0647500:intron 25.0%
!! TCAAATTTTTAATGACAAGG+TGG + chr4_3:53624889-53624908 Msa0647500:intron 25.0%
! TTAAATTTATGTCTTGGAGA+TGG + chr4_3:53624955-53624974 Msa0647500:intron 25.0%
!! AACCTTGTTTGTATTATGAA+TGG + chr4_3:53624984-53625003 Msa0647500:intron 25.0%
! ATAAAACGAATTGCTTCAAT+AGG + chr4_3:53625014-53625033 Msa0647500:intron 25.0%
! AAAACAAAAGGCCATTAAAA+AGG - chr4_3:53625203-53625222 None:intergenic 25.0%
! TTTGATCCTAATTGTGTATT+CGG + chr4_3:53625349-53625368 Msa0647500:intron 25.0%
!! ATTAACAATTTTATCGCATC+TGG + chr4_3:53625578-53625597 Msa0647500:intron 25.0%
! AGTATTATCATAATGGTGTA+TGG + chr4_3:53625722-53625741 Msa0647500:intron 25.0%
! TGACAACACAGAATAATATA+GGG - chr4_3:53625862-53625881 None:intergenic 25.0%
! TTGACAACACAGAATAATAT+AGG - chr4_3:53625863-53625882 None:intergenic 25.0%
!! TGTCAATTTTCTAATGTCAT+TGG + chr4_3:53625877-53625896 Msa0647500:intron 25.0%
!! GTCAATTTTCTAATGTCATT+GGG + chr4_3:53625878-53625897 Msa0647500:intron 25.0%
!! GTTAAACGCTTTTCAAATTT+AGG + chr4_3:53624181-53624200 Msa0647500:intron 25.0%
! GAAATAAGAAGAAAAGAGAA+AGG - chr4_3:53624326-53624345 None:intergenic 25.0%
!! ATTAGCATGATTCTTTTCTT+AGG - chr4_3:53624474-53624493 None:intergenic 25.0%
! AAGAAAAGAATCATGCTAAT+TGG + chr4_3:53624474-53624493 Msa0647500:intron 25.0%
! ACTTTGTGTAATAGATATTG+TGG + chr4_3:53624586-53624605 Msa0647500:intron 25.0%
! TAATAGATATTGTGGAATAG+AGG + chr4_3:53624594-53624613 Msa0647500:intron 25.0%
!!! TGTTGTTGTTTAATTGGTTA+GGG + chr4_3:53624740-53624759 Msa0647500:intron 25.0%
!! TCAAATTTTTAATGACAAGG+TGG + chr4_3:53624889-53624908 Msa0647500:intron 25.0%
! TTAAATTTATGTCTTGGAGA+TGG + chr4_3:53624955-53624974 Msa0647500:intron 25.0%
!! AACCTTGTTTGTATTATGAA+TGG + chr4_3:53624984-53625003 Msa0647500:intron 25.0%
! ATAAAACGAATTGCTTCAAT+AGG + chr4_3:53625014-53625033 Msa0647500:intron 25.0%
! AAAACAAAAGGCCATTAAAA+AGG - chr4_3:53625203-53625222 None:intergenic 25.0%
! TTTGATCCTAATTGTGTATT+CGG + chr4_3:53625349-53625368 Msa0647500:intron 25.0%
!! ATTAACAATTTTATCGCATC+TGG + chr4_3:53625578-53625597 Msa0647500:intron 25.0%
! AGTATTATCATAATGGTGTA+TGG + chr4_3:53625722-53625741 Msa0647500:intron 25.0%
! TGACAACACAGAATAATATA+GGG - chr4_3:53625862-53625881 None:intergenic 25.0%
! TTGACAACACAGAATAATAT+AGG - chr4_3:53625863-53625882 None:intergenic 25.0%
!! TGTCAATTTTCTAATGTCAT+TGG + chr4_3:53625877-53625896 Msa0647500:intron 25.0%
!! GTCAATTTTCTAATGTCATT+GGG + chr4_3:53625878-53625897 Msa0647500:intron 25.0%
CTCAAGAATTTGTCTTATGT+CGG - chr4_3:53623996-53624015 None:intergenic 30.0%
!!! CGTTTTATTTTCTCCCAATT+AGG + chr4_3:53624228-53624247 Msa0647500:intron 30.0%
TTGTTTCCAATGACCTAATT+GGG - chr4_3:53624244-53624263 None:intergenic 30.0%
TTTGTTTCCAATGACCTAAT+TGG - chr4_3:53624245-53624264 None:intergenic 30.0%
ATTAGGTCATTGGAAACAAA+TGG + chr4_3:53624245-53624264 Msa0647500:intron 30.0%
TTAGGTCATTGGAAACAAAT+GGG + chr4_3:53624246-53624265 Msa0647500:intron 30.0%
GAAGAAAAGAGAAAGGATTA+AGG - chr4_3:53624319-53624338 None:intergenic 30.0%
!! TTCTTCTTATTTCTGCATGT+AGG + chr4_3:53624333-53624352 Msa0647500:intron 30.0%
!! TCTTCTTATTTCTGCATGTA+GGG + chr4_3:53624334-53624353 Msa0647500:intron 30.0%
ATAATCACCACACAAAAACT+TGG - chr4_3:53624526-53624545 None:intergenic 30.0%
!! CTGTTGTTGTTTAATTGGTT+AGG + chr4_3:53624739-53624758 Msa0647500:intron 30.0%
! AATTTTTAATGACAAGGTGG+CGG + chr4_3:53624892-53624911 Msa0647500:intron 30.0%
!!! CGGTTGATCTAGAAATTTTT+TGG + chr4_3:53624912-53624931 Msa0647500:intron 30.0%
CACCATTCATAATACAAACA+AGG - chr4_3:53624989-53625008 None:intergenic 30.0%
! TGTTTTGTCGCATTGTTAAT+AGG + chr4_3:53625136-53625155 Msa0647500:intron 30.0%
! GCTTCTTATTACTTCCTTTT+GGG + chr4_3:53625271-53625290 Msa0647500:intron 30.0%
! CTTCTTATTACTTCCTTTTG+GGG + chr4_3:53625272-53625291 Msa0647500:intron 30.0%
! AGGTTTTTAAACTAGTTGAG+AGG + chr4_3:53625504-53625523 Msa0647500:intron 30.0%
! GGTTTTTAAACTAGTTGAGA+GGG + chr4_3:53625505-53625524 Msa0647500:intron 30.0%
AAATAAATGTGATTGCAGAG+CGG + chr4_3:53625529-53625548 Msa0647500:intron 30.0%
GCATTTCAAAATTTATCTCC+TGG + chr4_3:53625677-53625696 Msa0647500:intron 30.0%
TTTCTCAATGAGATCAACAT+GGG - chr4_3:53625811-53625830 None:intergenic 30.0%
! TACTGATTACCAAGATATGT+CGG + chr4_3:53625959-53625978 Msa0647500:three_prime_UTR 30.0%
GGAAAACTATTTAAAGGACA+GGG - chr4_3:53625998-53626017 None:intergenic 30.0%
TGGAAAACTATTTAAAGGAC+AGG - chr4_3:53625999-53626018 None:intergenic 30.0%
CTGCTTGGAAAACTATTTAA+AGG - chr4_3:53626004-53626023 None:intergenic 30.0%
CAGTTATAGCTAGTAAAGTT+AGG + chr4_3:53626021-53626040 Msa0647500:three_prime_UTR 30.0%
TTATAGCTAGTAAAGTTAGG+AGG + chr4_3:53626024-53626043 Msa0647500:three_prime_UTR 30.0%
! CATTTTCATAGAAAAGCTGT+CGG - chr4_3:53626172-53626191 None:intergenic 30.0%
! GACAGCTTTTCTATGAAAAT+GGG + chr4_3:53626171-53626190 Msa0647500:three_prime_UTR 30.0%
TCATAATTGATACTGATGCT+TGG + chr4_3:53626207-53626226 Msa0647500:three_prime_UTR 30.0%
CTCAAGAATTTGTCTTATGT+CGG - chr4_3:53623996-53624015 None:intergenic 30.0%
!!! CGTTTTATTTTCTCCCAATT+AGG + chr4_3:53624228-53624247 Msa0647500:intron 30.0%
TTGTTTCCAATGACCTAATT+GGG - chr4_3:53624244-53624263 None:intergenic 30.0%
TTTGTTTCCAATGACCTAAT+TGG - chr4_3:53624245-53624264 None:intergenic 30.0%
ATTAGGTCATTGGAAACAAA+TGG + chr4_3:53624245-53624264 Msa0647500:intron 30.0%
TTAGGTCATTGGAAACAAAT+GGG + chr4_3:53624246-53624265 Msa0647500:intron 30.0%
GAAGAAAAGAGAAAGGATTA+AGG - chr4_3:53624319-53624338 None:intergenic 30.0%
!! TTCTTCTTATTTCTGCATGT+AGG + chr4_3:53624333-53624352 Msa0647500:intron 30.0%
!! TCTTCTTATTTCTGCATGTA+GGG + chr4_3:53624334-53624353 Msa0647500:intron 30.0%
ATAATCACCACACAAAAACT+TGG - chr4_3:53624526-53624545 None:intergenic 30.0%
!! CTGTTGTTGTTTAATTGGTT+AGG + chr4_3:53624739-53624758 Msa0647500:intron 30.0%
! AATTTTTAATGACAAGGTGG+CGG + chr4_3:53624892-53624911 Msa0647500:intron 30.0%
!!! CGGTTGATCTAGAAATTTTT+TGG + chr4_3:53624912-53624931 Msa0647500:intron 30.0%
CACCATTCATAATACAAACA+AGG - chr4_3:53624989-53625008 None:intergenic 30.0%
! TGTTTTGTCGCATTGTTAAT+AGG + chr4_3:53625136-53625155 Msa0647500:intron 30.0%
! GCTTCTTATTACTTCCTTTT+GGG + chr4_3:53625271-53625290 Msa0647500:intron 30.0%
! CTTCTTATTACTTCCTTTTG+GGG + chr4_3:53625272-53625291 Msa0647500:intron 30.0%
! AGGTTTTTAAACTAGTTGAG+AGG + chr4_3:53625504-53625523 Msa0647500:intron 30.0%
! GGTTTTTAAACTAGTTGAGA+GGG + chr4_3:53625505-53625524 Msa0647500:intron 30.0%
AAATAAATGTGATTGCAGAG+CGG + chr4_3:53625529-53625548 Msa0647500:intron 30.0%
GCATTTCAAAATTTATCTCC+TGG + chr4_3:53625677-53625696 Msa0647500:intron 30.0%
TTTCTCAATGAGATCAACAT+GGG - chr4_3:53625811-53625830 None:intergenic 30.0%
! TACTGATTACCAAGATATGT+CGG + chr4_3:53625959-53625978 Msa0647500:three_prime_UTR 30.0%
GGAAAACTATTTAAAGGACA+GGG - chr4_3:53625998-53626017 None:intergenic 30.0%
TGGAAAACTATTTAAAGGAC+AGG - chr4_3:53625999-53626018 None:intergenic 30.0%
CTGCTTGGAAAACTATTTAA+AGG - chr4_3:53626004-53626023 None:intergenic 30.0%
CAGTTATAGCTAGTAAAGTT+AGG + chr4_3:53626021-53626040 Msa0647500:three_prime_UTR 30.0%
TTATAGCTAGTAAAGTTAGG+AGG + chr4_3:53626024-53626043 Msa0647500:three_prime_UTR 30.0%
! CATTTTCATAGAAAAGCTGT+CGG - chr4_3:53626172-53626191 None:intergenic 30.0%
! GACAGCTTTTCTATGAAAAT+GGG + chr4_3:53626171-53626190 Msa0647500:three_prime_UTR 30.0%
CGACATAAGACAAATTCTTG+AGG + chr4_3:53623994-53624013 Msa0647500:five_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr4_3:53624117-53624136 None:intergenic 35.0%
! TTTTCTCCCAATTAGGTCAT+TGG + chr4_3:53624235-53624254 Msa0647500:intron 35.0%
AAACAAATGGGACTCTTATC+TGG + chr4_3:53624258-53624277 Msa0647500:CDS 35.0%
! ACAAAAACTTGGTAACCCTA+AGG - chr4_3:53624515-53624534 None:intergenic 35.0%
GTTGTTTAATTGGTTAGGGT+TGG + chr4_3:53624744-53624763 Msa0647500:intron 35.0%
! GTTACACCTCAAAAGTTTTG+AGG + chr4_3:53624772-53624791 Msa0647500:intron 35.0%
! TCAACACCTCAAAACTTTTG+AGG - chr4_3:53624781-53624800 None:intergenic 35.0%
!!! AAAAGTTTTGAGGTGTTGAG+TGG + chr4_3:53624782-53624801 Msa0647500:intron 35.0%
!!! AAAGTTTTGAGGTGTTGAGT+GGG + chr4_3:53624783-53624802 Msa0647500:intron 35.0%
! AGAAAATGCGGAAAGGTTTT+TGG + chr4_3:53624819-53624838 Msa0647500:intron 35.0%
!!! GGAAAGGTTTTTGGCTTATT+TGG + chr4_3:53624828-53624847 Msa0647500:intron 35.0%
TTATTTGGCACGCAACAATT+TGG + chr4_3:53624843-53624862 Msa0647500:intron 35.0%
TATTTGGCACGCAACAATTT+GGG + chr4_3:53624844-53624863 Msa0647500:intron 35.0%
AAACGAATTGCTTCAATAGG+CGG + chr4_3:53625017-53625036 Msa0647500:intron 35.0%
! GAGCATTGTATTAGACTTAG+AGG + chr4_3:53625058-53625077 Msa0647500:intron 35.0%
!!! TGTAGCATTTTTGAGATGGT+TGG + chr4_3:53625101-53625120 Msa0647500:intron 35.0%
!!! GTAGCATTTTTGAGATGGTT+GGG + chr4_3:53625102-53625121 Msa0647500:intron 35.0%
AGACAGCTAGCTAAAACAAA+AGG - chr4_3:53625215-53625234 None:intergenic 35.0%
! GGCTTCTTATTACTTCCTTT+TGG + chr4_3:53625270-53625289 Msa0647500:intron 35.0%
!! TTATTACTTCCTTTTGGGGA+TGG + chr4_3:53625276-53625295 Msa0647500:intron 35.0%
!! TATTACTTCCTTTTGGGGAT+GGG + chr4_3:53625277-53625296 Msa0647500:intron 35.0%
TGGAAACCGAATACACAATT+AGG - chr4_3:53625358-53625377 None:intergenic 35.0%
AATAAATGTGATTGCAGAGC+GGG + chr4_3:53625530-53625549 Msa0647500:intron 35.0%
GTTTCTCAATGAGATCAACA+TGG - chr4_3:53625812-53625831 None:intergenic 35.0%
CTTTACTAGCTATAACTGCT+TGG - chr4_3:53626019-53626038 None:intergenic 35.0%
!! GTAAAGTTAGGAGGTATTTG+TGG + chr4_3:53626033-53626052 Msa0647500:intron 35.0%
!! AGGAGGTATTTGTGGTTATT+AGG + chr4_3:53626041-53626060 Msa0647500:intron 35.0%
AGGTATTTGTGGTTATTAGG+AGG + chr4_3:53626044-53626063 Msa0647500:intron 35.0%
! CGACAGCTTTTCTATGAAAA+TGG + chr4_3:53626170-53626189 Msa0647500:three_prime_UTR 35.0%
CGACATAAGACAAATTCTTG+AGG + chr4_3:53623994-53624013 Msa0647500:five_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr4_3:53624117-53624136 None:intergenic 35.0%
! TTTTCTCCCAATTAGGTCAT+TGG + chr4_3:53624235-53624254 Msa0647500:intron 35.0%
AAACAAATGGGACTCTTATC+TGG + chr4_3:53624258-53624277 Msa0647500:CDS 35.0%
! ACAAAAACTTGGTAACCCTA+AGG - chr4_3:53624515-53624534 None:intergenic 35.0%
GTTGTTTAATTGGTTAGGGT+TGG + chr4_3:53624744-53624763 Msa0647500:intron 35.0%
! GTTACACCTCAAAAGTTTTG+AGG + chr4_3:53624772-53624791 Msa0647500:intron 35.0%
! TCAACACCTCAAAACTTTTG+AGG - chr4_3:53624781-53624800 None:intergenic 35.0%
!!! AAAAGTTTTGAGGTGTTGAG+TGG + chr4_3:53624782-53624801 Msa0647500:intron 35.0%
!!! AAAGTTTTGAGGTGTTGAGT+GGG + chr4_3:53624783-53624802 Msa0647500:intron 35.0%
! AGAAAATGCGGAAAGGTTTT+TGG + chr4_3:53624819-53624838 Msa0647500:intron 35.0%
!!! GGAAAGGTTTTTGGCTTATT+TGG + chr4_3:53624828-53624847 Msa0647500:intron 35.0%
TTATTTGGCACGCAACAATT+TGG + chr4_3:53624843-53624862 Msa0647500:intron 35.0%
TATTTGGCACGCAACAATTT+GGG + chr4_3:53624844-53624863 Msa0647500:intron 35.0%
AAACGAATTGCTTCAATAGG+CGG + chr4_3:53625017-53625036 Msa0647500:intron 35.0%
! GAGCATTGTATTAGACTTAG+AGG + chr4_3:53625058-53625077 Msa0647500:intron 35.0%
!!! TGTAGCATTTTTGAGATGGT+TGG + chr4_3:53625101-53625120 Msa0647500:intron 35.0%
!!! GTAGCATTTTTGAGATGGTT+GGG + chr4_3:53625102-53625121 Msa0647500:intron 35.0%
AGACAGCTAGCTAAAACAAA+AGG - chr4_3:53625215-53625234 None:intergenic 35.0%
! GGCTTCTTATTACTTCCTTT+TGG + chr4_3:53625270-53625289 Msa0647500:intron 35.0%
!! TTATTACTTCCTTTTGGGGA+TGG + chr4_3:53625276-53625295 Msa0647500:intron 35.0%
!! TATTACTTCCTTTTGGGGAT+GGG + chr4_3:53625277-53625296 Msa0647500:intron 35.0%
TGGAAACCGAATACACAATT+AGG - chr4_3:53625358-53625377 None:intergenic 35.0%
AATAAATGTGATTGCAGAGC+GGG + chr4_3:53625530-53625549 Msa0647500:intron 35.0%
GTTTCTCAATGAGATCAACA+TGG - chr4_3:53625812-53625831 None:intergenic 35.0%
CTTTACTAGCTATAACTGCT+TGG - chr4_3:53626019-53626038 None:intergenic 35.0%
!! GTAAAGTTAGGAGGTATTTG+TGG + chr4_3:53626033-53626052 Msa0647500:intron 35.0%
!! AGGAGGTATTTGTGGTTATT+AGG + chr4_3:53626041-53626060 Msa0647500:intron 35.0%
AGGTATTTGTGGTTATTAGG+AGG + chr4_3:53626044-53626063 Msa0647500:intron 35.0%
! CGACAGCTTTTCTATGAAAA+TGG + chr4_3:53626170-53626189 Msa0647500:three_prime_UTR 35.0%
TCCACAAGTGAAACAACGAA+CGG - chr4_3:53624077-53624096 None:intergenic 40.0%
! TCGTTGTTTCACTTGTGGAA+AGG + chr4_3:53624078-53624097 Msa0647500:CDS 40.0%
TTCAAGCCGATTACACTGAA+GGG + chr4_3:53624287-53624306 Msa0647500:CDS 40.0%
! AGGGTTACCAAGTTTTTGTG+TGG + chr4_3:53624516-53624535 Msa0647500:intron 40.0%
TATTGTGGAATAGAGGAGCA+TGG + chr4_3:53624601-53624620 Msa0647500:intron 40.0%
! GCACTGACACTTATAATCGA+AGG + chr4_3:53624655-53624674 Msa0647500:intron 40.0%
!! TAATTGGTTAGGGTTGGTTG+TGG + chr4_3:53624750-53624769 Msa0647500:intron 40.0%
!! CTGCTGTAGCATTTTTGAGA+TGG + chr4_3:53625097-53625116 Msa0647500:intron 40.0%
CTAGTCCTGAAATTTGTGTG+CGG + chr4_3:53625176-53625195 Msa0647500:intron 40.0%
! TTGTGTGCGGTCCTTTTTAA+TGG + chr4_3:53625189-53625208 Msa0647500:intron 40.0%
CTGTCTGTTGTGTGTAAACT+TGG + chr4_3:53625229-53625248 Msa0647500:intron 40.0%
TGTTGTGTGTAAACTTGGAC+AGG + chr4_3:53625234-53625253 Msa0647500:intron 40.0%
GTTGTGTGTAAACTTGGACA+GGG + chr4_3:53625235-53625254 Msa0647500:intron 40.0%
TTGTGTGTAAACTTGGACAG+GGG + chr4_3:53625236-53625255 Msa0647500:intron 40.0%
!!! TGGACAGGGGTTGTTTTTAT+TGG + chr4_3:53625249-53625268 Msa0647500:intron 40.0%
! GGGTTTTTGTCTATGCGTTT+AGG + chr4_3:53625297-53625316 Msa0647500:intron 40.0%
TGTATGTGTCAGTGTTTCGT+AGG + chr4_3:53625484-53625503 Msa0647500:intron 40.0%
ATATTTAAGGGACGCAGTCA+GGG - chr4_3:53625641-53625660 None:intergenic 40.0%
TATATTTAAGGGACGCAGTC+AGG - chr4_3:53625642-53625661 None:intergenic 40.0%
CATACATTTGCTTGCAGCTA+TGG + chr4_3:53625912-53625931 Msa0647500:intron 40.0%
GGTAATCAGTAGTTCCTAAC+TGG - chr4_3:53625950-53625969 None:intergenic 40.0%
TCCACAAGTGAAACAACGAA+CGG - chr4_3:53624077-53624096 None:intergenic 40.0%
! TCGTTGTTTCACTTGTGGAA+AGG + chr4_3:53624078-53624097 Msa0647500:CDS 40.0%
TTCAAGCCGATTACACTGAA+GGG + chr4_3:53624287-53624306 Msa0647500:CDS 40.0%
! AGGGTTACCAAGTTTTTGTG+TGG + chr4_3:53624516-53624535 Msa0647500:intron 40.0%
TATTGTGGAATAGAGGAGCA+TGG + chr4_3:53624601-53624620 Msa0647500:intron 40.0%
! GCACTGACACTTATAATCGA+AGG + chr4_3:53624655-53624674 Msa0647500:intron 40.0%
!! TAATTGGTTAGGGTTGGTTG+TGG + chr4_3:53624750-53624769 Msa0647500:intron 40.0%
!! CTGCTGTAGCATTTTTGAGA+TGG + chr4_3:53625097-53625116 Msa0647500:intron 40.0%
CTAGTCCTGAAATTTGTGTG+CGG + chr4_3:53625176-53625195 Msa0647500:intron 40.0%
! TTGTGTGCGGTCCTTTTTAA+TGG + chr4_3:53625189-53625208 Msa0647500:intron 40.0%
CTGTCTGTTGTGTGTAAACT+TGG + chr4_3:53625229-53625248 Msa0647500:intron 40.0%
TGTTGTGTGTAAACTTGGAC+AGG + chr4_3:53625234-53625253 Msa0647500:intron 40.0%
GTTGTGTGTAAACTTGGACA+GGG + chr4_3:53625235-53625254 Msa0647500:intron 40.0%
TTGTGTGTAAACTTGGACAG+GGG + chr4_3:53625236-53625255 Msa0647500:intron 40.0%
!!! TGGACAGGGGTTGTTTTTAT+TGG + chr4_3:53625249-53625268 Msa0647500:intron 40.0%
! GGGTTTTTGTCTATGCGTTT+AGG + chr4_3:53625297-53625316 Msa0647500:intron 40.0%
TGTATGTGTCAGTGTTTCGT+AGG + chr4_3:53625484-53625503 Msa0647500:intron 40.0%
ATATTTAAGGGACGCAGTCA+GGG - chr4_3:53625641-53625660 None:intergenic 40.0%
TATATTTAAGGGACGCAGTC+AGG - chr4_3:53625642-53625661 None:intergenic 40.0%
CATACATTTGCTTGCAGCTA+TGG + chr4_3:53625912-53625931 Msa0647500:intron 40.0%
GGTAATCAGTAGTTCCTAAC+TGG - chr4_3:53625950-53625969 None:intergenic 40.0%
! AGTTCTAGCAGTGTCTTGAG+CGG + chr4_3:53624019-53624038 Msa0647500:five_prime_UTR 45.0%
CCACAAGTGAAACAACGAAC+GGG - chr4_3:53624076-53624095 None:intergenic 45.0%
CTTCAAGCCGATTACACTGA+AGG + chr4_3:53624286-53624305 Msa0647500:CDS 45.0%
CACTGACCCTTCAGTGTAAT+CGG - chr4_3:53624296-53624315 None:intergenic 45.0%
!! TTTGAGGTGTTGAGTGGGTT+AGG + chr4_3:53624788-53624807 Msa0647500:intron 45.0%
!! TTGAGGTGTTGAGTGGGTTA+GGG + chr4_3:53624789-53624808 Msa0647500:intron 45.0%
TAGGGAGTGGAGAGAAAATG+CGG + chr4_3:53624807-53624826 Msa0647500:intron 45.0%
AGTGGAGAGAAAATGCGGAA+AGG + chr4_3:53624812-53624831 Msa0647500:intron 45.0%
ACGCAACAATTTGGGTGCTT+TGG + chr4_3:53624852-53624871 Msa0647500:intron 45.0%
TACAGCAGAAAGCAAACAGC+AGG - chr4_3:53625085-53625104 None:intergenic 45.0%
GAGATGGTTGGGTGATCTAT+TGG + chr4_3:53625113-53625132 Msa0647500:intron 45.0%
GTCGCATTGTTAATAGGCAG+TGG + chr4_3:53625142-53625161 Msa0647500:intron 45.0%
AAGGACCGCACACAAATTTC+AGG - chr4_3:53625184-53625203 None:intergenic 45.0%
GACAAAAACCCATCCCCAAA+AGG - chr4_3:53625288-53625307 None:intergenic 45.0%
! GTTTAGGTGTTGCCTTGTTG+TGG + chr4_3:53625313-53625332 Msa0647500:intron 45.0%
AATACAGCCCAACCACAACA+AGG - chr4_3:53625328-53625347 None:intergenic 45.0%
TAAAAGACGTGCAAGAGAGC+TGG - chr4_3:53625378-53625397 None:intergenic 45.0%
! TATGGATTGCAGAGATGCAC+TGG + chr4_3:53625740-53625759 Msa0647500:intron 45.0%
TTTGCTTGCAGCTATGGAGA+AGG + chr4_3:53625918-53625937 Msa0647500:intron 45.0%
GCAACGTAACCGACATATCT+TGG - chr4_3:53625971-53625990 None:intergenic 45.0%
! AGTTCTAGCAGTGTCTTGAG+CGG + chr4_3:53624019-53624038 Msa0647500:five_prime_UTR 45.0%
CCACAAGTGAAACAACGAAC+GGG - chr4_3:53624076-53624095 None:intergenic 45.0%
CTTCAAGCCGATTACACTGA+AGG + chr4_3:53624286-53624305 Msa0647500:CDS 45.0%
CACTGACCCTTCAGTGTAAT+CGG - chr4_3:53624296-53624315 None:intergenic 45.0%
!! TTTGAGGTGTTGAGTGGGTT+AGG + chr4_3:53624788-53624807 Msa0647500:intron 45.0%
!! TTGAGGTGTTGAGTGGGTTA+GGG + chr4_3:53624789-53624808 Msa0647500:intron 45.0%
TAGGGAGTGGAGAGAAAATG+CGG + chr4_3:53624807-53624826 Msa0647500:intron 45.0%
AGTGGAGAGAAAATGCGGAA+AGG + chr4_3:53624812-53624831 Msa0647500:intron 45.0%
ACGCAACAATTTGGGTGCTT+TGG + chr4_3:53624852-53624871 Msa0647500:intron 45.0%
TACAGCAGAAAGCAAACAGC+AGG - chr4_3:53625085-53625104 None:intergenic 45.0%
GAGATGGTTGGGTGATCTAT+TGG + chr4_3:53625113-53625132 Msa0647500:intron 45.0%
GTCGCATTGTTAATAGGCAG+TGG + chr4_3:53625142-53625161 Msa0647500:intron 45.0%
AAGGACCGCACACAAATTTC+AGG - chr4_3:53625184-53625203 None:intergenic 45.0%
GACAAAAACCCATCCCCAAA+AGG - chr4_3:53625288-53625307 None:intergenic 45.0%
! GTTTAGGTGTTGCCTTGTTG+TGG + chr4_3:53625313-53625332 Msa0647500:intron 45.0%
AATACAGCCCAACCACAACA+AGG - chr4_3:53625328-53625347 None:intergenic 45.0%
TAAAAGACGTGCAAGAGAGC+TGG - chr4_3:53625378-53625397 None:intergenic 45.0%
! TATGGATTGCAGAGATGCAC+TGG + chr4_3:53625740-53625759 Msa0647500:intron 45.0%
TTTGCTTGCAGCTATGGAGA+AGG + chr4_3:53625918-53625937 Msa0647500:intron 45.0%
GCAACGTAACCGACATATCT+TGG - chr4_3:53625971-53625990 None:intergenic 45.0%
!!! TTTTGATTAATAAAAAAAAA+GGG - chr4_3:53624365-53624384 None:intergenic 5.0%
!!! ATTTTGATTAATAAAAAAAA+AGG - chr4_3:53624366-53624385 None:intergenic 5.0%
!!! TTTTGATTAATAAAAAAAAA+GGG - chr4_3:53624365-53624384 None:intergenic 5.0%
!!! ATTTTGATTAATAAAAAAAA+AGG - chr4_3:53624366-53624385 None:intergenic 5.0%
GTGTCTTGAGCGGAGAAACA+AGG + chr4_3:53624029-53624048 Msa0647500:five_prime_UTR 50.0%
! CCCGTTCGTTGTTTCACTTG+TGG + chr4_3:53624073-53624092 Msa0647500:CDS 50.0%
CGAATTGCTTCAATAGGCGG+TGG + chr4_3:53625020-53625039 Msa0647500:intron 50.0%
ATTGCTTCAATAGGCGGTGG+TGG + chr4_3:53625023-53625042 Msa0647500:intron 50.0%
TTGCTTCAATAGGCGGTGGT+GGG + chr4_3:53625024-53625043 Msa0647500:intron 50.0%
! AGGTGTTGCCTTGTTGTGGT+TGG + chr4_3:53625317-53625336 Msa0647500:intron 50.0%
! GGTGTTGCCTTGTTGTGGTT+GGG + chr4_3:53625318-53625337 Msa0647500:intron 50.0%
TGGTGTATCAGCGTCAATGC+TGG + chr4_3:53625449-53625468 Msa0647500:intron 50.0%
GGTGTATCAGCGTCAATGCT+GGG + chr4_3:53625450-53625469 Msa0647500:intron 50.0%
AGAGATGCACTGGATGCGTT+GGG + chr4_3:53625750-53625769 Msa0647500:intron 50.0%
!! GTCTGGTTCGGTATTGTTGC+AGG + chr4_3:53625772-53625791 Msa0647500:CDS 50.0%
GTGTCTTGAGCGGAGAAACA+AGG + chr4_3:53624029-53624048 Msa0647500:five_prime_UTR 50.0%
! CCCGTTCGTTGTTTCACTTG+TGG + chr4_3:53624073-53624092 Msa0647500:CDS 50.0%
CGAATTGCTTCAATAGGCGG+TGG + chr4_3:53625020-53625039 Msa0647500:intron 50.0%
ATTGCTTCAATAGGCGGTGG+TGG + chr4_3:53625023-53625042 Msa0647500:intron 50.0%
TTGCTTCAATAGGCGGTGGT+GGG + chr4_3:53625024-53625043 Msa0647500:intron 50.0%
! AGGTGTTGCCTTGTTGTGGT+TGG + chr4_3:53625317-53625336 Msa0647500:intron 50.0%
! GGTGTTGCCTTGTTGTGGTT+GGG + chr4_3:53625318-53625337 Msa0647500:intron 50.0%
TGGTGTATCAGCGTCAATGC+TGG + chr4_3:53625449-53625468 Msa0647500:intron 50.0%
GGTGTATCAGCGTCAATGCT+GGG + chr4_3:53625450-53625469 Msa0647500:intron 50.0%
AGAGATGCACTGGATGCGTT+GGG + chr4_3:53625750-53625769 Msa0647500:intron 50.0%
!! GTCTGGTTCGGTATTGTTGC+AGG + chr4_3:53625772-53625791 Msa0647500:CDS 50.0%
!! GTGTTGAGTGGGTTAGGGAG+TGG + chr4_3:53624794-53624813 Msa0647500:intron 55.0%
ATCAGCGTCAATGCTGGGTC+TGG + chr4_3:53625455-53625474 Msa0647500:intron 55.0%
CAGAGATGCACTGGATGCGT+TGG + chr4_3:53625749-53625768 Msa0647500:intron 55.0%
TGGATGCGTTGGGTCTGGTT+CGG + chr4_3:53625760-53625779 Msa0647500:CDS 55.0%
GGAGAAGGCTGAAGCCAGTT+AGG + chr4_3:53625933-53625952 Msa0647500:CDS 55.0%
!! GTGTTGAGTGGGTTAGGGAG+TGG + chr4_3:53624794-53624813 Msa0647500:intron 55.0%
ATCAGCGTCAATGCTGGGTC+TGG + chr4_3:53625455-53625474 Msa0647500:intron 55.0%
CAGAGATGCACTGGATGCGT+TGG + chr4_3:53625749-53625768 Msa0647500:intron 55.0%
TGGATGCGTTGGGTCTGGTT+CGG + chr4_3:53625760-53625779 Msa0647500:CDS 55.0%
GGAGAAGGCTGAAGCCAGTT+AGG + chr4_3:53625933-53625952 Msa0647500:CDS 55.0%
!! CTTCAATAGGCGGTGGTGGG+TGG + chr4_3:53625027-53625046 Msa0647500:intron 60.0%
TGCACTGGATGCGTTGGGTC+TGG + chr4_3:53625755-53625774 Msa0647500:CDS 60.0%
!! CTTCAATAGGCGGTGGTGGG+TGG + chr4_3:53625027-53625046 Msa0647500:intron 60.0%
TGCACTGGATGCGTTGGGTC+TGG + chr4_3:53625755-53625774 Msa0647500:CDS 60.0%
!! GCGGTGGTGGGTGGTTGTGT+TGG + chr4_3:53625036-53625055 Msa0647500:intron 65.0%
!! GCGGTGGTGGGTGGTTGTGT+TGG + chr4_3:53625036-53625055 Msa0647500:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 53623978 53626228 53623978 ID=Msa0647500;Name=Msa0647500
chr4_3 mRNA 53623978 53626228 53623978 ID=Msa0647500-mRNA-1;Parent=Msa0647500;Name=Msa0647500-mRNA-1;_AED=0.18;_eAED=0.18;_QI=86|1|1|1|0.75|0.6|5|241|71
chr4_3 exon 53623978 53624099 53623978 ID=Msa0647500-mRNA-1:exon:13456;Parent=Msa0647500-mRNA-1
chr4_3 exon 53624250 53624308 53624250 ID=Msa0647500-mRNA-1:exon:13457;Parent=Msa0647500-mRNA-1
chr4_3 exon 53625752 53625846 53625752 ID=Msa0647500-mRNA-1:exon:13458;Parent=Msa0647500-mRNA-1
chr4_3 exon 53625929 53626045 53625929 ID=Msa0647500-mRNA-1:exon:13459;Parent=Msa0647500-mRNA-1
chr4_3 exon 53626079 53626228 53626079 ID=Msa0647500-mRNA-1:exon:13460;Parent=Msa0647500-mRNA-1
chr4_3 five_prime_UTR 53623978 53624063 53623978 ID=Msa0647500-mRNA-1:five_prime_utr;Parent=Msa0647500-mRNA-1
chr4_3 CDS 53624064 53624099 53624064 ID=Msa0647500-mRNA-1:cds;Parent=Msa0647500-mRNA-1
chr4_3 CDS 53624250 53624308 53624250 ID=Msa0647500-mRNA-1:cds;Parent=Msa0647500-mRNA-1
chr4_3 CDS 53625752 53625846 53625752 ID=Msa0647500-mRNA-1:cds;Parent=Msa0647500-mRNA-1
chr4_3 CDS 53625929 53625954 53625929 ID=Msa0647500-mRNA-1:cds;Parent=Msa0647500-mRNA-1
chr4_3 three_prime_UTR 53625955 53626045 53625955 ID=Msa0647500-mRNA-1:three_prime_utr;Parent=Msa0647500-mRNA-1
chr4_3 three_prime_UTR 53626079 53626228 53626079 ID=Msa0647500-mRNA-1:three_prime_utr;Parent=Msa0647500-mRNA-1
Gene Sequence

>Msa0647500

ATGATTATTCCCGTTCGTTGTTTCACTTGTGGAAAGGTCATTGGAAACAAATGGGACTCTTATCTGGACTTTCTTCAAGCCGATTACACTGAAGGAGATGCACTGGATGCGTTGGGTCTGGTTCGGTATTGTTGCAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAACTATTGAACTATAACACTATGGAGAAGGCTGAAGCCAGTTAG

Protein sequence

>Msa0647500

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKAEAS*