AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0059040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0059040 MtrunA17_Chr1g0157741 96.888 482 6 1 1 473 1 482 0.0 935
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0059040 AT4G32720.2 50.985 457 158 9 1 445 1 403 1.64e-143 417
Msa0059040 AT4G32720.1 51.584 442 153 8 1 430 1 393 2.17e-141 413
Msa0059040 AT1G79880.1 41.784 426 180 11 5 427 4 364 7.80e-96 295
Msa0059040 AT1G79880.2 38.667 375 162 11 56 427 1 310 3.84e-69 224
Msa0059040 AT1G79880.3 38.243 387 166 12 56 434 1 322 6.09e-69 224
Msa0059040 AT5G46250.1 27.074 229 123 9 8 209 101 312 3.83e-12 68.6
Msa0059040 AT2G43970.2 29.452 146 88 2 2 147 185 315 3.91e-12 68.9
Msa0059040 AT2G43970.1 29.452 146 88 2 2 147 185 315 4.47e-12 68.6
Msa0059040 AT5G46250.2 29.940 167 92 5 8 166 101 250 7.49e-12 67.0
Msa0059040 AT5G46250.3 29.940 167 92 5 8 166 101 250 7.98e-12 67.0

Find 104 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGAGAGTGTAGGGTTT+TGG 0.250659 1_2:+15699197 None:intergenic
AGAAAGTATTAACTGCATTC+AGG 0.264212 1_2:-15693780 Msa0059040:exon
CGTGCTTTCTGAGCAGCTTC+AGG 0.270223 1_2:+15694392 None:intergenic
AAGGCTATAACTAAGCCTTT+AGG 0.286449 1_2:+15695165 None:intergenic
GCCGAAAAGGGCCAGGAAAC+TGG 0.288268 1_2:-15694862 Msa0059040:CDS
ACCTGCTCAATTACCTCTTC+TGG 0.299485 1_2:+15696361 None:intergenic
AACCTGTCGTATAACCTTCT+TGG 0.309750 1_2:+15699090 None:intergenic
TTTATAAGCAAATGTTAGTT+TGG 0.320143 1_2:-15693550 Msa0059040:three_prime_UTR
CTCAATTACCTCTTCTGGCT+TGG 0.321742 1_2:+15696366 None:intergenic
AGGCTATAACTAAGCCTTTA+GGG 0.335538 1_2:+15695166 None:intergenic
AAGGTTGTGTTTCAGAAGTT+TGG 0.339229 1_2:-15694781 Msa0059040:CDS
ACGTGCTGCTGCAGCCCTTT+CGG 0.339660 1_2:-15694372 Msa0059040:CDS
TGCTGCAGCCCTTTCGGAAA+AGG 0.341335 1_2:-15694366 Msa0059040:CDS
CGTAATAGAGACAATGATTC+TGG 0.344136 1_2:-15693825 Msa0059040:CDS
AAGTAAAACTAACCGGTAAC+TGG 0.344730 1_2:+15694305 None:intergenic
CTTTGCTTTGTTCCTTCAAT+CGG 0.350383 1_2:-15697400 Msa0059040:CDS
ACAGTACATAGATTTCAATA+TGG 0.354619 1_2:-15694447 Msa0059040:intron
TAACTACACAGTGGTTAGTT+TGG 0.362858 1_2:-15697423 Msa0059040:intron
GCTGCAGCCCTTTCGGAAAA+GGG 0.363306 1_2:-15694365 Msa0059040:CDS
TGAACTGCTCTTTAGTTTGA+AGG 0.365442 1_2:+15695146 None:intergenic
TCAATTACCTCTTCTGGCTT+GGG 0.381807 1_2:+15696367 None:intergenic
AAAGAGATTTAGGTTGTGTT+TGG 0.402101 1_2:+15699220 None:intergenic
TTTGGTAGTATATTGTTAGT+AGG 0.403876 1_2:-15693532 Msa0059040:three_prime_UTR
TGCGTGCCACTTACCTTCCT+CGG 0.406995 1_2:+15693981 None:intergenic
CTGGTTTAGTAGCTGCTTCA+AGG 0.408785 1_2:-15693744 Msa0059040:three_prime_UTR
TACTAAGCCCGCTGATGTTA+AGG 0.409561 1_2:-15697348 Msa0059040:CDS
TTCAATATGGGAGATGAGTC+AGG 0.414927 1_2:-15694434 Msa0059040:CDS
AAATAGGGTGAAGGAAGAAA+AGG 0.424715 1_2:-15694950 Msa0059040:CDS
GGAGGCTGAAGGCGAAGAAA+AGG 0.425040 1_2:-15694983 Msa0059040:CDS
GAAAGTATTAACTGCATTCA+GGG 0.425236 1_2:-15693779 Msa0059040:exon
AATACTTTCTATATTTACTT+TGG 0.427894 1_2:+15693793 None:intergenic
CGGGCGCTGAGCTAGAATTA+AGG 0.430112 1_2:-15695776 Msa0059040:CDS
ATGCTTTCGCATCCGATTGA+AGG 0.433367 1_2:+15697388 None:intergenic
GAAGAAGTGGAGTCCTTCTT+CGG 0.441428 1_2:-15696289 Msa0059040:CDS
GATTTCAGGTCAACAGTGTT+CGG 0.445081 1_2:-15695905 Msa0059040:intron
AGAAGAGCCTAGAAAACAAT+GGG 0.446713 1_2:-15694912 Msa0059040:CDS
GCTACTCTAGATCCAGTTAC+CGG 0.447734 1_2:-15694317 Msa0059040:intron
CTTGGCATATTGACCGAAGA+AGG 0.449259 1_2:+15696276 None:intergenic
AAAGAGAAAGAGAGAGTGTA+GGG 0.449605 1_2:+15699191 None:intergenic
GGAGGAGGAAGGTATGGTAG+AGG 0.458576 1_2:-15693861 Msa0059040:CDS
TGCATTCCAGGGAGCAAAGT+TGG 0.464023 1_2:-15696406 Msa0059040:intron
TACTGTGAAGCTTGAAGAAG+TGG 0.465343 1_2:-15696302 Msa0059040:CDS
GAAATTAGAGAGTGGCGGTA+TGG 0.479890 1_2:+15699163 None:intergenic
GGTGACTGAAGGTGCCGAAA+AGG 0.481831 1_2:-15694875 Msa0059040:CDS
TATCTTGTTTACCACGAAGC+TGG 0.484324 1_2:+15694026 None:intergenic
AGCTTCACAGTATATTCAAA+TGG 0.487645 1_2:+15696313 None:intergenic
GAAAGAGAAAGAGAGAGTGT+AGG 0.487659 1_2:+15699190 None:intergenic
CAGTACATAGATTTCAATAT+GGG 0.489907 1_2:-15694446 Msa0059040:CDS
TTTGCTCAAGAAATCATCCC+TGG 0.490461 1_2:+15698954 None:intergenic
TGTGTTATCCTCCTCGTGGT+TGG 0.492162 1_2:+15695288 None:intergenic
GAGATGAGTCAGGCTTCATT+CGG 0.493240 1_2:-15694424 Msa0059040:CDS
TTCAGGGGAGGAGGAAGGTA+TGG 0.496516 1_2:-15693867 Msa0059040:intron
CTGCAGCCCTTTCGGAAAAG+GGG 0.498607 1_2:-15694364 Msa0059040:CDS
TTCCAGGGAGCAAAGTTGGC+AGG 0.499364 1_2:-15696402 Msa0059040:intron
TGTCTTACGTGAAGATTTGA+AGG 0.499878 1_2:-15694800 Msa0059040:CDS
AAATTAGAGAGTGGCGGTAT+GGG 0.505052 1_2:+15699164 None:intergenic
GCCAGAAGAGGTAATTGAGC+AGG 0.508078 1_2:-15696362 Msa0059040:CDS
ACTGTCAATGAAAGTGAAGA+TGG 0.510540 1_2:-15698931 Msa0059040:CDS
TGAAGGTGCCGAAAAGGGCC+AGG 0.512350 1_2:-15694869 Msa0059040:CDS
GAGTAGCTGAGAACAAAATC+AGG 0.512851 1_2:+15693717 None:intergenic
CCGAAAAGGGCCAGGAAACT+GGG 0.514402 1_2:-15694861 Msa0059040:CDS
TATTGTTACAGCTACCCTAA+AGG 0.518011 1_2:-15695180 Msa0059040:intron
GTTTCTTCCTTAACATCAGC+GGG 0.518351 1_2:+15697341 None:intergenic
GTGACTGAAGGTGCCGAAAA+GGG 0.521308 1_2:-15694874 Msa0059040:CDS
GTTCGGTTGCCCCGTCATGT+TGG 0.521804 1_2:-15695888 Msa0059040:CDS
TGCAGCCCTTTCGGAAAAGG+GGG 0.524299 1_2:-15694363 Msa0059040:CDS
TCCTCAGCAGCAACTTCAGA+GGG 0.526503 1_2:+15695072 None:intergenic
CAATACTGGAGCCAGCTTCG+TGG 0.527832 1_2:-15694037 Msa0059040:CDS
TCAGTGATAGTAATCTTCCC+AGG 0.528131 1_2:-15698972 Msa0059040:CDS
ACCCTCTGAAGTTGCTGCTG+AGG 0.528326 1_2:-15695073 Msa0059040:CDS
GGAGGAAGGTATGGTAGAGG+AGG 0.530321 1_2:-15693858 Msa0059040:CDS
AGCCTAGAAAACAATGGGGC+AGG 0.531567 1_2:-15694907 Msa0059040:CDS
TTCAGGGTTATTTACAACAC+TGG 0.539199 1_2:-15693763 Msa0059040:three_prime_UTR
TGGTTTAGTAGCTGCTTCAA+GGG 0.539915 1_2:-15693743 Msa0059040:three_prime_UTR
GAAAACAATGGGGCAGGTGA+AGG 0.540808 1_2:-15694901 Msa0059040:CDS
AACCAAGAAGGTTATACGAC+AGG 0.543197 1_2:-15699092 Msa0059040:intron
TCACTCAAGCTATCAGAAGA+TGG 0.556963 1_2:-15697281 Msa0059040:intron
GATGCGAAAGCATCTTAAGT+TGG 0.561750 1_2:-15697378 Msa0059040:CDS
CAATGGGGCAGGTGAAGGAA+AGG 0.574806 1_2:-15694896 Msa0059040:CDS
TTCCTCAGCAGCAACTTCAG+AGG 0.588125 1_2:+15695071 None:intergenic
CATCTGATGAGAACTCAACA+AGG 0.591422 1_2:+15695838 None:intergenic
CAATGGAGTGAACGAAGGAA+AGG 0.592633 1_2:-15695004 Msa0059040:CDS
TCAGAAGTTTGGTGATGTGA+AGG 0.592670 1_2:-15694770 Msa0059040:intron
CAGTGATAGTAATCTTCCCA+GGG 0.596203 1_2:-15698971 Msa0059040:CDS
GCAGCCCTTTCGGAAAAGGG+GGG 0.596520 1_2:-15694362 Msa0059040:CDS
GAGAAGAGCCTAGAAAACAA+TGG 0.597234 1_2:-15694913 Msa0059040:CDS
TGACGAAGAAACAACCAAGA+AGG 0.607861 1_2:-15699104 Msa0059040:CDS
TTGCTCAAGAAATCATCCCT+GGG 0.608198 1_2:+15698955 None:intergenic
TGAACTTCCCAAGCCAGAAG+AGG 0.608914 1_2:-15696374 Msa0059040:CDS
AGAGACAATGATTCTGGACG+AGG 0.611973 1_2:-15693819 Msa0059040:CDS
GACAATGATAAAGAAAACAA+TGG 0.616572 1_2:-15695021 Msa0059040:CDS
GGTGAAGGAAAGGTGACTGA+AGG 0.628219 1_2:-15694886 Msa0059040:CDS
AGTTTCTTCCTTAACATCAG+CGG 0.630747 1_2:+15697340 None:intergenic
CTTCTTCGGTCAATATGCCA+AGG 0.638433 1_2:-15696275 Msa0059040:intron
AGAAAACTGAAATTAGAGAG+TGG 0.639196 1_2:+15699155 None:intergenic
AACGAAGGAAAGGAGGCTGA+AGG 0.639810 1_2:-15694994 Msa0059040:CDS
TGGAGTGAACGAAGGAAAGG+AGG 0.640717 1_2:-15695001 Msa0059040:CDS
TATTTGTGTTATCCTCCTCG+TGG 0.654110 1_2:+15695284 None:intergenic
GAAAACAATGGAGTGAACGA+AGG 0.669742 1_2:-15695009 Msa0059040:CDS
ATCTGATGAGAACTCAACAA+GGG 0.670020 1_2:+15695839 None:intergenic
AAACTGAAATTAGAGAGTGG+CGG 0.703278 1_2:+15699158 None:intergenic
GAATGTGGGTTCCAACCACG+AGG 0.704964 1_2:-15695299 Msa0059040:CDS
TGTGGGTTCCAACCACGAGG+AGG 0.705081 1_2:-15695296 Msa0059040:CDS
GAAGAGCCTAGAAAACAATG+GGG 0.768621 1_2:-15694911 Msa0059040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAACAAAAATAGTT+TGG - chr1_2:15696755-15696774 Msa0059040:intron 10.0%
!!! AAATTGAAGTTTTTTATAAA+GGG + chr1_2:15697266-15697285 None:intergenic 10.0%
!!! TGTTATTTTTGAATTAATTT+TGG - chr1_2:15699146-15699165 Msa0059040:five_prime_UTR 10.0%
!!! GTTTATATTTTTAATGATGA+AGG - chr1_2:15695882-15695901 Msa0059040:CDS 15.0%
!! TGTATATTCATTAAATTTCT+TGG - chr1_2:15696626-15696645 Msa0059040:intron 15.0%
!! TAATATATGTATTTGTCAAA+TGG + chr1_2:15697154-15697173 None:intergenic 15.0%
!! TATTAAAAAACTGTAATTGA+TGG - chr1_2:15697201-15697220 Msa0059040:intron 15.0%
!!! GAAATTGAAGTTTTTTATAA+AGG + chr1_2:15697267-15697286 None:intergenic 15.0%
!!! TCGTCTTTTTTTTATTTATT+TGG - chr1_2:15698101-15698120 Msa0059040:intron 15.0%
!!! AATTATATTAATACCTTTTC+AGG - chr1_2:15698868-15698887 Msa0059040:intron 15.0%
!!! ATTATATTAATACCTTTTCA+GGG - chr1_2:15698869-15698888 Msa0059040:intron 15.0%
!! AATACTTTCTATATTTACTT+TGG + chr1_2:15698962-15698981 None:intergenic 15.0%
!!! TTTTTAGTTAAGTTTCAATT+TGG - chr1_2:15699088-15699107 Msa0059040:intron 15.0%
!!! TCAATTTGGTTTATGTTTTT+AGG - chr1_2:15693879-15693898 Msa0059040:intron 20.0%
!!! CAATTTGGTTTATGTTTTTA+GGG - chr1_2:15693880-15693899 Msa0059040:intron 20.0%
!!! CTTCAATTTTCTTAAATGAT+CGG + chr1_2:15693984-15694003 None:intergenic 20.0%
!! ATTTAAGAAAATTGAAGTAC+CGG - chr1_2:15693987-15694006 Msa0059040:intron 20.0%
!!! GAAGAAAATAAACTGATTTT+AGG + chr1_2:15694595-15694614 None:intergenic 20.0%
!! GTTAATACCAATAAAAAGTA+GGG - chr1_2:15694658-15694677 Msa0059040:intron 20.0%
!!! ATATTTTCTCAAATTACTGT+TGG - chr1_2:15695019-15695038 Msa0059040:CDS 20.0%
!! TACAACAATTATACACAAAA+TGG + chr1_2:15695527-15695546 None:intergenic 20.0%
!!! TAATTTAAAGTTAGTGATAG+TGG - chr1_2:15695769-15695788 Msa0059040:intron 20.0%
!! AACAGCATAATCTAAATTAA+TGG + chr1_2:15695961-15695980 None:intergenic 20.0%
!!! ATTAATTTAGAGTTAATCGA+AGG + chr1_2:15696050-15696069 None:intergenic 20.0%
!! TAGATATAAATTTCATGTAG+TGG + chr1_2:15696076-15696095 None:intergenic 20.0%
!! AATGAAATTTATATCTATCG+TGG + chr1_2:15696115-15696134 None:intergenic 20.0%
!!! TTAGTGAATCATTAATTTTC+TGG - chr1_2:15696134-15696153 Msa0059040:intron 20.0%
!! GAAATAAGTAATAAGTTATG+TGG + chr1_2:15696312-15696331 None:intergenic 20.0%
!! AAAAATATATATTAATGCCG+TGG - chr1_2:15696530-15696549 Msa0059040:intron 20.0%
!!! AGATTTCTTTAAGATAAATC+TGG - chr1_2:15696688-15696707 Msa0059040:intron 20.0%
!!! ACATTTTTGTTTTTGATTTC+AGG - chr1_2:15696833-15696852 Msa0059040:intron 20.0%
!!! ATTACTTTGCTTTCATTTTA+TGG + chr1_2:15697540-15697559 None:intergenic 20.0%
!! ATAGATAAATATCAAACCAA+AGG + chr1_2:15698050-15698069 None:intergenic 20.0%
!!! ATCTAATTTTTCAATCAGTT+GGG - chr1_2:15698474-15698493 Msa0059040:intron 20.0%
!! AAAAATAGAGAAAATCATCA+AGG + chr1_2:15698809-15698828 None:intergenic 20.0%
!!! TGATGATTTTCTCTATTTTT+TGG - chr1_2:15698809-15698828 Msa0059040:intron 20.0%
!!! GATGATTTTCTCTATTTTTT+GGG - chr1_2:15698810-15698829 Msa0059040:intron 20.0%
!!! TTATATTAATACCTTTTCAG+GGG - chr1_2:15698870-15698889 Msa0059040:intron 20.0%
!! TTTATAAGCAAATGTTAGTT+TGG - chr1_2:15699202-15699221 Msa0059040:five_prime_UTR 20.0%
! GAATAATTAAGCAAAAACGA+CGG + chr1_2:15693693-15693712 None:intergenic 25.0%
! CCAAATTGATAAACAAAAGA+GGG + chr1_2:15693868-15693887 None:intergenic 25.0%
! ACCAAATTGATAAACAAAAG+AGG + chr1_2:15693869-15693888 None:intergenic 25.0%
!!! GGTTTTGTTAATGTAATTGA+AGG - chr1_2:15693901-15693920 Msa0059040:intron 25.0%
!!! GTTACATTTGTTGTTGTTTT+TGG - chr1_2:15694318-15694337 Msa0059040:CDS 25.0%
!!! ATTTGTTGTTGTTTTTGGAA+TGG - chr1_2:15694323-15694342 Msa0059040:CDS 25.0%
!!! TTTGTTGTTGTTTTTGGAAT+GGG - chr1_2:15694324-15694343 Msa0059040:CDS 25.0%
!!! CCATTCAATTCAATTTTAGT+GGG - chr1_2:15694383-15694402 Msa0059040:CDS 25.0%
! GAGACTTATTAATTAAATGG+TGG + chr1_2:15694463-15694482 None:intergenic 25.0%
! CGTTAATACCAATAAAAAGT+AGG - chr1_2:15694657-15694676 Msa0059040:intron 25.0%
!! ATTTTCCCTAGTTTACATTT+TGG + chr1_2:15695234-15695253 None:intergenic 25.0%
! TTGATCAAATGAGAAGAAAT+TGG + chr1_2:15695264-15695283 None:intergenic 25.0%
! TTATACACAAAATGGATGAA+TGG + chr1_2:15695519-15695538 None:intergenic 25.0%
! GTGATAAATTCATTCTAATC+AGG - chr1_2:15695556-15695575 Msa0059040:intron 25.0%
! CAATCTATCCTATTCTTAAT+TGG + chr1_2:15695739-15695758 None:intergenic 25.0%
! AACTCTAAATTAACGATAGA+TGG - chr1_2:15695935-15695954 Msa0059040:intron 25.0%
! ATTTAGATTATGCTGTTGTA+TGG - chr1_2:15695964-15695983 Msa0059040:intron 25.0%
! ATTTATGTTGTTCTGTTGTA+TGG - chr1_2:15695996-15696015 Msa0059040:intron 25.0%
!! TCACTTGAAATTTTGTTCAT+TGG - chr1_2:15696209-15696228 Msa0059040:intron 25.0%
!! CACTTGAAATTTTGTTCATT+GGG - chr1_2:15696210-15696229 Msa0059040:intron 25.0%
! CATTGATGTTAATATTACCT+TGG + chr1_2:15696497-15696516 None:intergenic 25.0%
! CATTCTAACAGTATTATAGT+CGG - chr1_2:15696557-15696576 Msa0059040:intron 25.0%
!! ATACATAAAGCATCATTACT+CGG + chr1_2:15696611-15696630 None:intergenic 25.0%
! AAACCTTCAAATATTAACCA+CGG + chr1_2:15696724-15696743 None:intergenic 25.0%
!!! TGGATTTTGACAGAAAATAT+TGG + chr1_2:15697134-15697153 None:intergenic 25.0%
! TGTATATATTTACTCAATGC+AGG - chr1_2:15697374-15697393 Msa0059040:CDS 25.0%
!! TTGCTTTCATTTTATGGTTA+GGG + chr1_2:15697534-15697553 None:intergenic 25.0%
!! TTTGCTTTCATTTTATGGTT+AGG + chr1_2:15697535-15697554 None:intergenic 25.0%
! GACAATGATAAAGAAAACAA+TGG - chr1_2:15697731-15697750 Msa0059040:intron 25.0%
! CAGGTTATTAAAACAAAAGA+AGG + chr1_2:15698157-15698176 None:intergenic 25.0%
! ACAGTACATAGATTTCAATA+TGG - chr1_2:15698305-15698324 Msa0059040:intron 25.0%
! CAGTACATAGATTTCAATAT+GGG - chr1_2:15698306-15698325 Msa0059040:intron 25.0%
! GATGTAAAAGTAAAACTAAC+CGG + chr1_2:15698457-15698476 None:intergenic 25.0%
!!! CATCTAATTTTTCAATCAGT+TGG - chr1_2:15698473-15698492 Msa0059040:intron 25.0%
!!! CTAGTGACAATGATTTTTTA+TGG - chr1_2:15698535-15698554 Msa0059040:intron 25.0%
!! TTTGGTAGTATATTGTTAGT+AGG - chr1_2:15699220-15699239 Msa0059040:five_prime_UTR 25.0%
!! AAAGAGATTTAGGTTGTGTT+TGG + chr1_2:15693535-15693554 None:intergenic 30.0%
AGAAAACTGAAATTAGAGAG+TGG + chr1_2:15693600-15693619 None:intergenic 30.0%
! AGTTTTCTCATTCTCATCAA+TGG - chr1_2:15693612-15693631 Msa0059040:three_prime_UTR 30.0%
!! TTTTGTTTGTTTGAAACTGC+AGG - chr1_2:15693745-15693764 Msa0059040:three_prime_UTR 30.0%
ATAAACAAAAGAGGGCAAAA+TGG + chr1_2:15693860-15693879 None:intergenic 30.0%
!! CCCTCTTTTGTTTATCAATT+TGG - chr1_2:15693865-15693884 Msa0059040:CDS 30.0%
! ATCACTATCGTGTTTTATGT+TGG + chr1_2:15693946-15693965 None:intergenic 30.0%
TAGGTACATGTATACGTATA+CGG + chr1_2:15694274-15694293 None:intergenic 30.0%
! GCCATTCAATTCAATTTTAG+TGG - chr1_2:15694382-15694401 Msa0059040:CDS 30.0%
CCCACTAAAATTGAATTGAA+TGG + chr1_2:15694386-15694405 None:intergenic 30.0%
!!! ATTTTAGTGGGTTAGTTCTA+TGG - chr1_2:15694395-15694414 Msa0059040:CDS 30.0%
GGCGAGACTTATTAATTAAA+TGG + chr1_2:15694466-15694485 None:intergenic 30.0%
TAATTAATAAGTCTCGCCAT+TGG - chr1_2:15694468-15694487 Msa0059040:intron 30.0%
! GAGACTTTTTGATCTAATAG+TGG - chr1_2:15694508-15694527 Msa0059040:intron 30.0%
! ATAGTGGAAAAAAACTTGTC+TGG - chr1_2:15694524-15694543 Msa0059040:intron 30.0%
CACTAAAATGGCTAATTCTT+CGG + chr1_2:15694571-15694590 None:intergenic 30.0%
!!! CTGATTTTAGGACACTAAAA+TGG + chr1_2:15694583-15694602 None:intergenic 30.0%
!!! AGGTTTACCCTACTTTTTAT+TGG + chr1_2:15694668-15694687 None:intergenic 30.0%
TTGAGTGCAAATACAAGTTT+CGG + chr1_2:15694994-15695013 None:intergenic 30.0%
! TCCTAAAGACTATAGTTTGT+TGG - chr1_2:15695154-15695173 Msa0059040:CDS 30.0%
!! CCTAAAGACTATAGTTTGTT+GGG - chr1_2:15695155-15695174 Msa0059040:CDS 30.0%
ATCCTACCAAAATGTAAACT+AGG - chr1_2:15695225-15695244 Msa0059040:intron 30.0%
TCCTACCAAAATGTAAACTA+GGG - chr1_2:15695226-15695245 Msa0059040:intron 30.0%
!!! ATTTTTTTCTCTCACTTTGC+TGG - chr1_2:15695713-15695732 Msa0059040:intron 30.0%
AACAGAACAACATAAATCGA+AGG + chr1_2:15695993-15696012 None:intergenic 30.0%
! TGAAACTTTCTAAGAGTAGA+TGG - chr1_2:15696166-15696185 Msa0059040:intron 30.0%
AGCTTCACAGTATATTCAAA+TGG + chr1_2:15696442-15696461 None:intergenic 30.0%
TACTGTTAGAATGTAAACCA+CGG + chr1_2:15696550-15696569 None:intergenic 30.0%
AACCTTCAAATATTAACCAC+GGG + chr1_2:15696723-15696742 None:intergenic 30.0%
! AAATAGTTTGGAGTATAGTC+TGG - chr1_2:15696767-15696786 Msa0059040:intron 30.0%
GAAGCAAAAATTAGTGTATG+CGG - chr1_2:15696956-15696975 Msa0059040:intron 30.0%
AAGCAAAAATTAGTGTATGC+GGG - chr1_2:15696957-15696976 Msa0059040:intron 30.0%
ATCTATGAACATGCTTACTT+TGG + chr1_2:15697002-15697021 None:intergenic 30.0%
!! TGACTGTTGATGAATTTTAG+TGG - chr1_2:15697037-15697056 Msa0059040:intron 30.0%
ATTTACTAACTTCTACCTGT+GGG - chr1_2:15697290-15697309 Msa0059040:CDS 30.0%
TGAAAAATCTCGTAAGAATG+TGG - chr1_2:15697438-15697457 Msa0059040:intron 30.0%
GAAAAATCTCGTAAGAATGT+GGG - chr1_2:15697439-15697458 Msa0059040:intron 30.0%
! TGCTTTCATTTTATGGTTAG+GGG + chr1_2:15697533-15697552 None:intergenic 30.0%
AAAAGGAGCAAGAGAAAAAT+AGG - chr1_2:15697786-15697805 Msa0059040:intron 30.0%
AAAGGAGCAAGAGAAAAATA+GGG - chr1_2:15697787-15697806 Msa0059040:intron 30.0%
TGAGTTAAAGATCTAAACCA+CGG + chr1_2:15698181-15698200 None:intergenic 30.0%
TACCAATCAAGAATAAGTCT+CGG + chr1_2:15698672-15698691 None:intergenic 30.0%
TTCTTGATTGGTATGTAATC+AGG - chr1_2:15698679-15698698 Msa0059040:intron 30.0%
!! AGAAAGTATTAACTGCATTC+AGG - chr1_2:15698972-15698991 Msa0059040:CDS 30.0%
!! GAAAGTATTAACTGCATTCA+GGG - chr1_2:15698973-15698992 Msa0059040:CDS 30.0%
!!! AGGGTTTTGGAAAGAGATTT+AGG + chr1_2:15693545-15693564 None:intergenic 35.0%
! AAAGAGAAAGAGAGAGTGTA+GGG + chr1_2:15693564-15693583 None:intergenic 35.0%
AAACTGAAATTAGAGAGTGG+CGG + chr1_2:15693597-15693616 None:intergenic 35.0%
ACTGTCAATGAAAGTGAAGA+TGG - chr1_2:15693821-15693840 Msa0059040:CDS 35.0%
AAAGAGGGCAAAATGGTAAA+AGG + chr1_2:15693853-15693872 None:intergenic 35.0%
!! TAAGAAAATTGAAGTACCGG+CGG - chr1_2:15693990-15694009 Msa0059040:intron 35.0%
CCAGTAAAATTGTGAAGTAC+CGG - chr1_2:15694015-15694034 Msa0059040:CDS 35.0%
TCACTCAAAACGAGAAAAAG+TGG + chr1_2:15694074-15694093 None:intergenic 35.0%
TACATGTACCTATGCAACAT+AGG - chr1_2:15694282-15694301 Msa0059040:intron 35.0%
TCACATACATATGAGAGTGA+AGG + chr1_2:15694354-15694373 None:intergenic 35.0%
TCATATCTCACTTGAACCAA+TGG + chr1_2:15694487-15694506 None:intergenic 35.0%
AAAGTAGGGTAAACCTTAGT+CGG - chr1_2:15694672-15694691 Msa0059040:intron 35.0%
AGATTACTCTTTAGGTGAGT+TGG - chr1_2:15694809-15694828 Msa0059040:CDS 35.0%
GATTACTCTTTAGGTGAGTT+GGG - chr1_2:15694810-15694829 Msa0059040:CDS 35.0%
! AAGTTTAGGACTCTGTTAGT+GGG + chr1_2:15694907-15694926 None:intergenic 35.0%
! AAAGTTTAGGACTCTGTTAG+TGG + chr1_2:15694908-15694927 None:intergenic 35.0%
! CTATAGTCTTTAGGAGAAGT+TGG + chr1_2:15695149-15695168 None:intergenic 35.0%
CCCAACAAACTATAGTCTTT+AGG + chr1_2:15695158-15695177 None:intergenic 35.0%
!! TCCCTAGTTTACATTTTGGT+AGG + chr1_2:15695230-15695249 None:intergenic 35.0%
CTGAAATTCTAACTACACAG+TGG - chr1_2:15695320-15695339 Msa0059040:CDS 35.0%
! TAACTACACAGTGGTTAGTT+TGG - chr1_2:15695329-15695348 Msa0059040:CDS 35.0%
! CTTTGCTTTGTTCCTTCAAT+CGG - chr1_2:15695352-15695371 Msa0059040:CDS 35.0%
AGTTTCTTCCTTAACATCAG+CGG + chr1_2:15695415-15695434 None:intergenic 35.0%
TTTGCTGGCCAATTAAGAAT+AGG - chr1_2:15695728-15695747 Msa0059040:intron 35.0%
! AATAGGATAGATTGCTGTTC+TGG - chr1_2:15695745-15695764 Msa0059040:intron 35.0%
CTAGAGCTTTGCAAAGAAAT+TGG + chr1_2:15695827-15695846 None:intergenic 35.0%
GAAACAAAATGTCACGTATG+TGG + chr1_2:15696277-15696296 None:intergenic 35.0%
CTCATGTTTACCAGAATCAT+AGG + chr1_2:15696670-15696689 None:intergenic 35.0%
ATCCCGTGGTTAATATTTGA+AGG - chr1_2:15696718-15696737 Msa0059040:intron 35.0%
! ACTTTTTGTCTCCAACATGA+CGG + chr1_2:15696878-15696897 None:intergenic 35.0%
ATCTGATGAGAACTCAACAA+GGG + chr1_2:15696916-15696935 None:intergenic 35.0%
!!! GTTTTTTATAAAGGGATGCC+AGG + chr1_2:15697258-15697277 None:intergenic 35.0%
CATTTACTAACTTCTACCTG+TGG - chr1_2:15697289-15697308 Msa0059040:CDS 35.0%
TTTACTAACTTCTACCTGTG+GGG - chr1_2:15697291-15697310 Msa0059040:CDS 35.0%
TATATTTACTCAATGCAGGC+AGG - chr1_2:15697378-15697397 Msa0059040:CDS 35.0%
TATTGTTACAGCTACCCTAA+AGG - chr1_2:15697572-15697591 Msa0059040:intron 35.0%
AGGCTATAACTAAGCCTTTA+GGG + chr1_2:15697589-15697608 None:intergenic 35.0%
AAGGCTATAACTAAGCCTTT+AGG + chr1_2:15697590-15697609 None:intergenic 35.0%
!! TGAACTGCTCTTTAGTTTGA+AGG + chr1_2:15697609-15697628 None:intergenic 35.0%
! GTCACGTCATTATTCTTTTC+TGG + chr1_2:15697641-15697660 None:intergenic 35.0%
AAATAGGGTGAAGGAAGAAA+AGG - chr1_2:15697802-15697821 Msa0059040:intron 35.0%
AGAAGAGCCTAGAAAACAAT+GGG - chr1_2:15697840-15697859 Msa0059040:intron 35.0%
TGTCTTACGTGAAGATTTGA+AGG - chr1_2:15697952-15697971 Msa0059040:intron 35.0%
AAGGTTGTGTTTCAGAAGTT+TGG - chr1_2:15697971-15697990 Msa0059040:intron 35.0%
! TGGTGATGTGAAGGTAAATA+TGG - chr1_2:15697991-15698010 Msa0059040:intron 35.0%
!!! TTGTTTTAATAACCTGACCG+TGG - chr1_2:15698161-15698180 Msa0059040:intron 35.0%
AAGTAAAACTAACCGGTAAC+TGG + chr1_2:15698450-15698469 None:intergenic 35.0%
ACCAATCAAGAATAAGTCTC+GGG + chr1_2:15698671-15698690 None:intergenic 35.0%
GTGAAGCTGAAAAACAATAC+TGG - chr1_2:15698701-15698720 Msa0059040:intron 35.0%
!!! TCTCTATTTTTTGGGATCAC+CGG - chr1_2:15698818-15698837 Msa0059040:intron 35.0%
!! TATTAATACCTTTTCAGGGG+AGG - chr1_2:15698873-15698892 Msa0059040:intron 35.0%
CGTAATAGAGACAATGATTC+TGG - chr1_2:15698927-15698946 Msa0059040:intron 35.0%
TTCAGGGTTATTTACAACAC+TGG - chr1_2:15698989-15699008 Msa0059040:intron 35.0%
!! AAAGAGAGAGTGTAGGGTTT+TGG + chr1_2:15693558-15693577 None:intergenic 40.0%
! GAAAGAGAAAGAGAGAGTGT+AGG + chr1_2:15693565-15693584 None:intergenic 40.0%
AAATTAGAGAGTGGCGGTAT+GGG + chr1_2:15693591-15693610 None:intergenic 40.0%
TGACGAAGAAACAACCAAGA+AGG - chr1_2:15693648-15693667 Msa0059040:three_prime_UTR 40.0%
AACCAAGAAGGTTATACGAC+AGG - chr1_2:15693660-15693679 Msa0059040:three_prime_UTR 40.0%
AACCTGTCGTATAACCTTCT+TGG + chr1_2:15693665-15693684 None:intergenic 40.0%
TCAGTGATAGTAATCTTCCC+AGG - chr1_2:15693780-15693799 Msa0059040:exon 40.0%
CAGTGATAGTAATCTTCCCA+GGG - chr1_2:15693781-15693800 Msa0059040:exon 40.0%
TTGCTCAAGAAATCATCCCT+GGG + chr1_2:15693800-15693819 None:intergenic 40.0%
TTTGCTCAAGAAATCATCCC+TGG + chr1_2:15693801-15693820 None:intergenic 40.0%
! CCGGTACTTCACAATTTTAC+TGG + chr1_2:15694018-15694037 None:intergenic 40.0%
!! GTAAAATTGTGAAGTACCGG+CGG - chr1_2:15694018-15694037 Msa0059040:CDS 40.0%
GTCTGGTACAACACTATTAG+TGG - chr1_2:15694541-15694560 Msa0059040:intron 40.0%
!! GGTGTGACTCGATTTTTAAG+CGG - chr1_2:15694693-15694712 Msa0059040:intron 40.0%
AATCCCCACAACACATCTTT+GGG - chr1_2:15694744-15694763 Msa0059040:intron 40.0%
TTTCAACCTAAGCACCTTAG+CGG - chr1_2:15694786-15694805 Msa0059040:CDS 40.0%
CTAAAGAGTAATCTCCGCTA+AGG + chr1_2:15694803-15694822 None:intergenic 40.0%
CTTAGCGGAGATTACTCTTT+AGG - chr1_2:15694801-15694820 Msa0059040:CDS 40.0%
! TCTGTTAGTGGGTAATCTGT+TGG + chr1_2:15694896-15694915 None:intergenic 40.0%
!! GTTTCGGTGCTACAAAGTTT+AGG + chr1_2:15694921-15694940 None:intergenic 40.0%
GCTTTCGATCAGACAAGTTT+CGG + chr1_2:15694937-15694956 None:intergenic 40.0%
AGTTGAACATATGCCCTTGT+GGG - chr1_2:15695116-15695135 Msa0059040:CDS 40.0%
GTAGGATATCTCTGTAAGTG+GGG + chr1_2:15695212-15695231 None:intergenic 40.0%
GGTAGGATATCTCTGTAAGT+GGG + chr1_2:15695213-15695232 None:intergenic 40.0%
TGGTAGGATATCTCTGTAAG+TGG + chr1_2:15695214-15695233 None:intergenic 40.0%
!! GATGCGAAAGCATCTTAAGT+TGG - chr1_2:15695374-15695393 Msa0059040:intron 40.0%
GTTTCTTCCTTAACATCAGC+GGG + chr1_2:15695414-15695433 None:intergenic 40.0%
TCACTCAAGCTATCAGAAGA+TGG - chr1_2:15695471-15695490 Msa0059040:intron 40.0%
TCTAATCAGGCAACTGCAAT+AGG - chr1_2:15695569-15695588 Msa0059040:intron 40.0%
GTCGACTACAACAGTATAGA+AGG + chr1_2:15695805-15695824 None:intergenic 40.0%
TCATTCTATTCGTGCATTCC+AGG - chr1_2:15696334-15696353 Msa0059040:CDS 40.0%
CATTCTATTCGTGCATTCCA+GGG - chr1_2:15696335-15696354 Msa0059040:CDS 40.0%
!! TCAATTACCTCTTCTGGCTT+GGG + chr1_2:15696388-15696407 None:intergenic 40.0%
TACTGTGAAGCTTGAAGAAG+TGG - chr1_2:15696450-15696469 Msa0059040:intron 40.0%
! CATAAAGCATCATTACTCGG+AGG + chr1_2:15696608-15696627 None:intergenic 40.0%
CTTGGTGAAAAGTTGAAGCA+TGG - chr1_2:15696644-15696663 Msa0059040:intron 40.0%
AATCTGGTATTTGAATCCCG+TGG - chr1_2:15696704-15696723 Msa0059040:intron 40.0%
! GATTTCAGGTCAACAGTGTT+CGG - chr1_2:15696847-15696866 Msa0059040:intron 40.0%
! TTTTTGTCTCCAACATGACG+GGG + chr1_2:15696876-15696895 None:intergenic 40.0%
! CTTTTTGTCTCCAACATGAC+GGG + chr1_2:15696877-15696896 None:intergenic 40.0%
GGAGACAAAAAGTTCTTCTG+TGG - chr1_2:15696885-15696904 Msa0059040:intron 40.0%
CATCTGATGAGAACTCAACA+AGG + chr1_2:15696917-15696936 None:intergenic 40.0%
GTGAGTGATTATGATTCTCC+TGG - chr1_2:15697237-15697256 Msa0059040:intron 40.0%
TATTTGTGTTATCCTCCTCG+TGG + chr1_2:15697471-15697490 None:intergenic 40.0%
! GGGTTTTTGCTCATCTGTTT+TGG + chr1_2:15697663-15697682 None:intergenic 40.0%
GAAAACAATGGAGTGAACGA+AGG - chr1_2:15697743-15697762 Msa0059040:intron 40.0%
GCAAGAGAAAAATAGGGTGA+AGG - chr1_2:15697793-15697812 Msa0059040:intron 40.0%
GAGAAGAGCCTAGAAAACAA+TGG - chr1_2:15697839-15697858 Msa0059040:intron 40.0%
GAAGAGCCTAGAAAACAATG+GGG - chr1_2:15697841-15697860 Msa0059040:intron 40.0%
!!! CTGTTTTTTTCCCAGTTTCC+TGG + chr1_2:15697904-15697923 None:intergenic 40.0%
!! TCAGAAGTTTGGTGATGTGA+AGG - chr1_2:15697982-15698001 Msa0059040:intron 40.0%
TAAAGATCTAAACCACGGTC+AGG + chr1_2:15698176-15698195 None:intergenic 40.0%
TTCAATATGGGAGATGAGTC+AGG - chr1_2:15698318-15698337 Msa0059040:intron 40.0%
! GTCTGTTTGGTTCAAACAAG+AGG + chr1_2:15698648-15698667 None:intergenic 40.0%
CCAATCAAGAATAAGTCTCG+GGG + chr1_2:15698670-15698689 None:intergenic 40.0%
! TATCTTGTTTACCACGAAGC+TGG + chr1_2:15698729-15698748 None:intergenic 40.0%
!! AGAGAAAGTTTTAGCAACCG+AGG - chr1_2:15698754-15698773 Msa0059040:intron 40.0%
!! AAAGTTTTAGCAACCGAGGA+AGG - chr1_2:15698758-15698777 Msa0059040:intron 40.0%
!!! CTCTATTTTTTGGGATCACC+GGG - chr1_2:15698819-15698838 Msa0059040:intron 40.0%
!!! TCTATTTTTTGGGATCACCG+GGG - chr1_2:15698820-15698839 Msa0059040:intron 40.0%
TGGTTTAGTAGCTGCTTCAA+GGG - chr1_2:15699009-15699028 Msa0059040:intron 40.0%
GAGTAGCTGAGAACAAAATC+AGG + chr1_2:15699038-15699057 None:intergenic 40.0%
! TCAGCTACTCACAGATTTTG+TGG - chr1_2:15699048-15699067 Msa0059040:intron 40.0%
! CTACTCACAGATTTTGTGGT+TGG - chr1_2:15699052-15699071 Msa0059040:intron 40.0%
GAAATTAGAGAGTGGCGGTA+TGG + chr1_2:15693592-15693611 None:intergenic 45.0%
! CACAATTTTACTGGTACCGC+CGG + chr1_2:15694009-15694028 None:intergenic 45.0%
ATCTTCCGTACCTGTTGCAT+AGG - chr1_2:15694246-15694265 Msa0059040:intron 45.0%
GTATACGGTACCTATGCAAC+AGG + chr1_2:15694259-15694278 None:intergenic 45.0%
GACATCGACCTATGTTGCAT+AGG + chr1_2:15694293-15694312 None:intergenic 45.0%
ATGCAACATAGGTCGATGTC+TGG - chr1_2:15694293-15694312 Msa0059040:intron 45.0%
CTATGGTGCACAAGTGAGAT+AGG - chr1_2:15694412-15694431 Msa0059040:CDS 45.0%
! AAATCGAGTCACACCGACTA+AGG + chr1_2:15694688-15694707 None:intergenic 45.0%
!! TTTTTAAGCGGCTGACCTTG+TGG - chr1_2:15694705-15694724 Msa0059040:intron 45.0%
! TTTTAAGCGGCTGACCTTGT+GGG - chr1_2:15694706-15694725 Msa0059040:intron 45.0%
CAATCCCCACAACACATCTT+TGG - chr1_2:15694743-15694762 Msa0059040:intron 45.0%
ATCCCCACAACACATCTTTG+GGG - chr1_2:15694745-15694764 Msa0059040:intron 45.0%
! TAATCTCCGCTAAGGTGCTT+AGG + chr1_2:15694795-15694814 None:intergenic 45.0%
TGTCAGACACAGACATGTGT+TGG + chr1_2:15694971-15694990 None:intergenic 45.0%
TGATGTGTCAGAATCGTGTC+TGG - chr1_2:15695045-15695064 Msa0059040:CDS 45.0%
TCTGGTGTTCGTGTTAGTGT+CGG - chr1_2:15695063-15695082 Msa0059040:CDS 45.0%
CAACTCCTGTTGTCAACGTT+GGG + chr1_2:15695101-15695120 None:intergenic 45.0%
TCAACTCCTGTTGTCAACGT+TGG + chr1_2:15695102-15695121 None:intergenic 45.0%
GAGTTGAACATATGCCCTTG+TGG - chr1_2:15695115-15695134 Msa0059040:CDS 45.0%
GTTGAACATATGCCCTTGTG+GGG - chr1_2:15695117-15695136 Msa0059040:CDS 45.0%
!! TAGTTTGTTGGGATGCTCTG+TGG - chr1_2:15695166-15695185 Msa0059040:CDS 45.0%
!! AGTTTGTTGGGATGCTCTGT+GGG - chr1_2:15695167-15695186 Msa0059040:CDS 45.0%
ATGCTTTCGCATCCGATTGA+AGG + chr1_2:15695367-15695386 None:intergenic 45.0%
TACTAAGCCCGCTGATGTTA+AGG - chr1_2:15695404-15695423 Msa0059040:intron 45.0%
! CTCAATTACCTCTTCTGGCT+TGG + chr1_2:15696389-15696408 None:intergenic 45.0%
ACCTGCTCAATTACCTCTTC+TGG + chr1_2:15696394-15696413 None:intergenic 45.0%
GAAGAAGTGGAGTCCTTCTT+CGG - chr1_2:15696463-15696482 Msa0059040:intron 45.0%
CTTGGCATATTGACCGAAGA+AGG + chr1_2:15696479-15696498 None:intergenic 45.0%
CTTCTTCGGTCAATATGCCA+AGG - chr1_2:15696477-15696496 Msa0059040:intron 45.0%
TGAAGCATGGCCTATGATTC+TGG - chr1_2:15696657-15696676 Msa0059040:intron 45.0%
CAATGGAGTGAACGAAGGAA+AGG - chr1_2:15697748-15697767 Msa0059040:intron 45.0%
CTGTTGGGACTTTCTTCCTT+TGG - chr1_2:15698031-15698050 Msa0059040:intron 45.0%
GAGATGAGTCAGGCTTCATT+CGG - chr1_2:15698328-15698347 Msa0059040:intron 45.0%
GCTACTCTAGATCCAGTTAC+CGG - chr1_2:15698435-15698454 Msa0059040:intron 45.0%
AATAAGTCTCGGGGTCTGTT+TGG + chr1_2:15698661-15698680 None:intergenic 45.0%
CCCCGAGACTTATTCTTGAT+TGG - chr1_2:15698667-15698686 Msa0059040:intron 45.0%
!!! CTATTTTTTGGGATCACCGG+GGG - chr1_2:15698821-15698840 Msa0059040:intron 45.0%
! AGTTTGAGTTTCACTACCCC+CGG + chr1_2:15698840-15698859 None:intergenic 45.0%
!! TAATACCTTTTCAGGGGAGG+AGG - chr1_2:15698876-15698895 Msa0059040:intron 45.0%
AGAGACAATGATTCTGGACG+AGG - chr1_2:15698933-15698952 Msa0059040:CDS 45.0%
CTGGTTTAGTAGCTGCTTCA+AGG - chr1_2:15699008-15699027 Msa0059040:intron 45.0%
!!! TTTTTAAAAAATTAAAGTTT+GGG + chr1_2:15694219-15694238 None:intergenic 5.0%
!!! ATTTTTAAAAAATTAAAGTT+TGG + chr1_2:15694220-15694239 None:intergenic 5.0%
!!! AATATATATTTTTTTTTTGA+AGG + chr1_2:15696523-15696542 None:intergenic 5.0%
!! ATATTATTATAATTTCTTAT+AGG - chr1_2:15697086-15697105 Msa0059040:intron 5.0%
CGGTACCTATGCAACAGGTA+CGG + chr1_2:15694254-15694273 None:intergenic 50.0%
TTTAAGCGGCTGACCTTGTG+GGG - chr1_2:15694707-15694726 Msa0059040:intron 50.0%
CTCCCCAAAGATGTGTTGTG+GGG + chr1_2:15694750-15694769 None:intergenic 50.0%
CCTCCCCAAAGATGTGTTGT+GGG + chr1_2:15694751-15694770 None:intergenic 50.0%
! CCACAACACATCTTTGGGGA+GGG - chr1_2:15694749-15694768 Msa0059040:intron 50.0%
! CACAACACATCTTTGGGGAG+GGG - chr1_2:15694750-15694769 Msa0059040:intron 50.0%
! TTTAGGTGAGTTGGGTCCCT+TGG - chr1_2:15694818-15694837 Msa0059040:CDS 50.0%
! TTAGGTGAGTTGGGTCCCTT+GGG - chr1_2:15694819-15694838 Msa0059040:CDS 50.0%
! TGTCTGATCGAAAGCGTGTC+CGG - chr1_2:15694942-15694961 Msa0059040:CDS 50.0%
!! TGTTAGTGTCGGTGCTTCAC+AGG - chr1_2:15695074-15695093 Msa0059040:CDS 50.0%
! AGTTGGCTCATACCCCACAA+GGG + chr1_2:15695132-15695151 None:intergenic 50.0%
! AAGTTGGCTCATACCCCACA+AGG + chr1_2:15695133-15695152 None:intergenic 50.0%
! GTTTGTTGGGATGCTCTGTG+GGG - chr1_2:15695168-15695187 Msa0059040:CDS 50.0%
ATCTCTGTAAGTGGGGCCTT+TGG + chr1_2:15695205-15695224 None:intergenic 50.0%
TGCATTCCAGGGAGCAAAGT+TGG - chr1_2:15696346-15696365 Msa0059040:CDS 50.0%
TGAACTTCCCAAGCCAGAAG+AGG - chr1_2:15696378-15696397 Msa0059040:CDS 50.0%
GCCAGAAGAGGTAATTGAGC+AGG - chr1_2:15696390-15696409 Msa0059040:CDS 50.0%
GCATCATTACTCGGAGGCTA+AGG + chr1_2:15696602-15696621 None:intergenic 50.0%
TGTGTTATCCTCCTCGTGGT+TGG + chr1_2:15697467-15697486 None:intergenic 50.0%
TCCTCAGCAGCAACTTCAGA+GGG + chr1_2:15697683-15697702 None:intergenic 50.0%
TTCCTCAGCAGCAACTTCAG+AGG + chr1_2:15697684-15697703 None:intergenic 50.0%
TGGAGTGAACGAAGGAAAGG+AGG - chr1_2:15697751-15697770 Msa0059040:intron 50.0%
AACGAAGGAAAGGAGGCTGA+AGG - chr1_2:15697758-15697777 Msa0059040:intron 50.0%
AGCCTAGAAAACAATGGGGC+AGG - chr1_2:15697845-15697864 Msa0059040:intron 50.0%
! CACCTGCCCCATTGTTTTCT+AGG + chr1_2:15697850-15697869 None:intergenic 50.0%
GAAAACAATGGGGCAGGTGA+AGG - chr1_2:15697851-15697870 Msa0059040:intron 50.0%
GGTGAAGGAAAGGTGACTGA+AGG - chr1_2:15697866-15697885 Msa0059040:intron 50.0%
!! GTGACTGAAGGTGCCGAAAA+GGG - chr1_2:15697878-15697897 Msa0059040:intron 50.0%
! TTTTCCCGTTCTCCAGCTGT+TGG - chr1_2:15698015-15698034 Msa0059040:intron 50.0%
TTTCCCGTTCTCCAGCTGTT+GGG - chr1_2:15698016-15698035 Msa0059040:intron 50.0%
AAGTCCCAACAGCTGGAGAA+CGG + chr1_2:15698023-15698042 None:intergenic 50.0%
AGGAAGAAAGTCCCAACAGC+TGG + chr1_2:15698030-15698049 None:intergenic 50.0%
! TAAGCCCCCCTTTTCCGAAA+GGG + chr1_2:15698397-15698416 None:intergenic 50.0%
TAGCAACCGAGGAAGGTAAG+TGG - chr1_2:15698765-15698784 Msa0059040:intron 50.0%
CGAGAAAAAGTGGAGTCCCG+CGG + chr1_2:15694064-15694083 None:intergenic 55.0%
TTAAGCGGCTGACCTTGTGG+GGG - chr1_2:15694708-15694727 Msa0059040:intron 55.0%
AATAGCAGTCCTCCCCCACA+AGG + chr1_2:15694723-15694742 None:intergenic 55.0%
! CCCACAACACATCTTTGGGG+AGG - chr1_2:15694748-15694767 Msa0059040:intron 55.0%
CCCTCCCCAAAGATGTGTTG+TGG + chr1_2:15694752-15694771 None:intergenic 55.0%
! CACAGACATGTGTTGGCCAC+CGG + chr1_2:15694964-15694983 None:intergenic 55.0%
CAGGTCCCAACGTTGACAAC+AGG - chr1_2:15695093-15695112 Msa0059040:CDS 55.0%
TTCCAGGGAGCAAAGTTGGC+AGG - chr1_2:15696350-15696369 Msa0059040:CDS 55.0%
ATCCTGCCAACTTTGCTCCC+TGG + chr1_2:15696355-15696374 None:intergenic 55.0%
!! CGGGCGCTGAGCTAGAATTA+AGG - chr1_2:15696976-15696995 Msa0059040:intron 55.0%
AAGACTGTCTTACGCCCCAC+AGG + chr1_2:15697308-15697327 None:intergenic 55.0%
GAATGTGGGTTCCAACCACG+AGG - chr1_2:15697453-15697472 Msa0059040:intron 55.0%
!! ACCCTCTGAAGTTGCTGCTG+AGG - chr1_2:15697679-15697698 Msa0059040:intron 55.0%
GGAGGCTGAAGGCGAAGAAA+AGG - chr1_2:15697769-15697788 Msa0059040:intron 55.0%
CAATGGGGCAGGTGAAGGAA+AGG - chr1_2:15697856-15697875 Msa0059040:intron 55.0%
!! GGTGACTGAAGGTGCCGAAA+AGG - chr1_2:15697877-15697896 Msa0059040:intron 55.0%
! CCCAGTTTCCTGGCCCTTTT+CGG + chr1_2:15697894-15697913 None:intergenic 55.0%
CCGAAAAGGGCCAGGAAACT+GGG - chr1_2:15697891-15697910 Msa0059040:intron 55.0%
AGTCCCAACAGCTGGAGAAC+GGG + chr1_2:15698022-15698041 None:intergenic 55.0%
CGTGCTTTCTGAGCAGCTTC+AGG + chr1_2:15698363-15698382 None:intergenic 55.0%
TGCTGCAGCCCTTTCGGAAA+AGG - chr1_2:15698386-15698405 Msa0059040:intron 55.0%
GCTGCAGCCCTTTCGGAAAA+GGG - chr1_2:15698387-15698406 Msa0059040:intron 55.0%
CTGCAGCCCTTTCGGAAAAG+GGG - chr1_2:15698388-15698407 Msa0059040:intron 55.0%
TGCAGCCCTTTCGGAAAAGG+GGG - chr1_2:15698389-15698408 Msa0059040:intron 55.0%
! CTAAGCCCCCCTTTTCCGAA+AGG + chr1_2:15698398-15698417 None:intergenic 55.0%
CAATACTGGAGCCAGCTTCG+TGG - chr1_2:15698715-15698734 Msa0059040:intron 55.0%
!! TGCGTGCCACTTACCTTCCT+CGG + chr1_2:15698774-15698793 None:intergenic 55.0%
!! ACCTTTTCAGGGGAGGAGGA+AGG - chr1_2:15698880-15698899 Msa0059040:intron 55.0%
ACCTTCCTCCTCCCCTGAAA+AGG + chr1_2:15698884-15698903 None:intergenic 55.0%
TTCAGGGGAGGAGGAAGGTA+TGG - chr1_2:15698885-15698904 Msa0059040:intron 55.0%
! GGAGGAGGAAGGTATGGTAG+AGG - chr1_2:15698891-15698910 Msa0059040:intron 55.0%
! GGAGGAAGGTATGGTAGAGG+AGG - chr1_2:15698894-15698913 Msa0059040:intron 55.0%
!! TGTGAAGTACCGGCGGTACC+AGG - chr1_2:15694025-15694044 Msa0059040:CDS 60.0%
TTGGGTCCCTTGGGCTGACT+AGG - chr1_2:15694828-15694847 Msa0059040:CDS 60.0%
TGGGTCCCTTGGGCTGACTA+GGG - chr1_2:15694829-15694848 Msa0059040:CDS 60.0%
CCTGACCCTAGTCAGCCCAA+GGG + chr1_2:15694837-15694856 None:intergenic 60.0%
CCTTGGGCTGACTAGGGTCA+GGG - chr1_2:15694835-15694854 Msa0059040:CDS 60.0%
TAGGGTCAGGGTAGGCCTCA+AGG - chr1_2:15694847-15694866 Msa0059040:CDS 60.0%
TCAGCGCTCTGTGAGCCTTG+AGG + chr1_2:15694865-15694884 None:intergenic 60.0%
! CTGATCGAAAGCGTGTCCGG+TGG - chr1_2:15694945-15694964 Msa0059040:CDS 60.0%
TGGGGCCACTGTGGTACCAA+AGG - chr1_2:15695186-15695205 Msa0059040:intron 60.0%
TGGGGCCTTTGGTACCACAG+TGG + chr1_2:15695194-15695213 None:intergenic 60.0%
GTTCGGTTGCCCCGTCATGT+TGG - chr1_2:15696864-15696883 Msa0059040:intron 60.0%
TGTGGGTTCCAACCACGAGG+AGG - chr1_2:15697456-15697475 Msa0059040:intron 60.0%
!! TGAAGGTGCCGAAAAGGGCC+AGG - chr1_2:15697883-15697902 Msa0059040:intron 60.0%
GCCGAAAAGGGCCAGGAAAC+TGG - chr1_2:15697890-15697909 Msa0059040:intron 60.0%
! ACGTGCTGCTGCAGCCCTTT+CGG - chr1_2:15698380-15698399 Msa0059040:intron 60.0%
GCAGCCCTTTCGGAAAAGGG+GGG - chr1_2:15698390-15698409 Msa0059040:intron 60.0%
AGGCACGTACCTGGTACCGC+CGG + chr1_2:15694037-15694056 None:intergenic 65.0%
CAGGTACGTGCCTGGTACCG+CGG - chr1_2:15694044-15694063 Msa0059040:CDS 65.0%
AGGTACGTGCCTGGTACCGC+GGG - chr1_2:15694045-15694064 Msa0059040:CDS 65.0%
AAGTGGAGTCCCGCGGTACC+AGG + chr1_2:15694057-15694076 None:intergenic 65.0%
CCCTTGGGCTGACTAGGGTC+AGG - chr1_2:15694834-15694853 Msa0059040:CDS 65.0%
CCCTGACCCTAGTCAGCCCA+AGG + chr1_2:15694838-15694857 None:intergenic 65.0%
GGGCTGACTAGGGTCAGGGT+AGG - chr1_2:15694839-15694858 Msa0059040:CDS 65.0%
GATGCTCTGTGGGGCCACTG+TGG - chr1_2:15695177-15695196 Msa0059040:intron 65.0%
GGCGGTACCAGGTACGTGCC+TGG - chr1_2:15694036-15694055 Msa0059040:CDS 70.0%
CGCGGTACCAGGCACGTACC+TGG + chr1_2:15694046-15694065 None:intergenic 70.0%
AGCGGCTGACCTTGTGGGGG+AGG - chr1_2:15694711-15694730 Msa0059040:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 15693526 15699248 15693526 ID=Msa0059040;Name=Msa0059040
chr1_2 mRNA 15693526 15699248 15693526 ID=Msa0059040-mRNA-1;Parent=Msa0059040;Name=Msa0059040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=105|1|1|1|1|1|10|265|473
chr1_2 exon 15693526 15693884 15693526 ID=Msa0059040-mRNA-1:exon:6391;Parent=Msa0059040-mRNA-1
chr1_2 exon 15693995 15694073 15693995 ID=Msa0059040-mRNA-1:exon:6390;Parent=Msa0059040-mRNA-1
chr1_2 exon 15694318 15694465 15694318 ID=Msa0059040-mRNA-1:exon:6389;Parent=Msa0059040-mRNA-1
chr1_2 exon 15694771 15695191 15694771 ID=Msa0059040-mRNA-1:exon:6388;Parent=Msa0059040-mRNA-1
chr1_2 exon 15695274 15695378 15695274 ID=Msa0059040-mRNA-1:exon:6387;Parent=Msa0059040-mRNA-1
chr1_2 exon 15695771 15695919 15695771 ID=Msa0059040-mRNA-1:exon:6386;Parent=Msa0059040-mRNA-1
chr1_2 exon 15696276 15696418 15696276 ID=Msa0059040-mRNA-1:exon:6385;Parent=Msa0059040-mRNA-1
chr1_2 exon 15697282 15697434 15697282 ID=Msa0059040-mRNA-1:exon:6384;Parent=Msa0059040-mRNA-1
chr1_2 exon 15698929 15699007 15698929 ID=Msa0059040-mRNA-1:exon:6383;Parent=Msa0059040-mRNA-1
chr1_2 exon 15699093 15699248 15699093 ID=Msa0059040-mRNA-1:exon:6382;Parent=Msa0059040-mRNA-1
chr1_2 five_prime_UTR 15699144 15699248 15699144 ID=Msa0059040-mRNA-1:five_prime_utr;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15699093 15699143 15699093 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15698929 15699007 15698929 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15697282 15697434 15697282 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15696276 15696418 15696276 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15695771 15695919 15695771 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15695274 15695378 15695274 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15694771 15695191 15694771 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15694318 15694465 15694318 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15693995 15694073 15693995 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 CDS 15693791 15693884 15693791 ID=Msa0059040-mRNA-1:cds;Parent=Msa0059040-mRNA-1
chr1_2 three_prime_UTR 15693526 15693790 15693526 ID=Msa0059040-mRNA-1:three_prime_utr;Parent=Msa0059040-mRNA-1
Gene Sequence

>Msa0059040

ATGGCGAAACATTCACTTGACGAAGAAACAACCAAGAAGGTTATACGACAGGTTGAATTTTATTTCAGTGATAGTAATCTTCCCAGGGATGATTTCTTGAGCAAAACTGTCAATGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGCTTTGTTCCTTCAATCGGATGCGAAAGCATCTTAAGTTGGCTGATGATACTAAGCCCGCTGATGTTAAGGAAGAAACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCTGCTTCACTCAAGCTATCAGAAGATGGGAGCAAAGTTGGCAGGATTACTGAACTTCCCAAGCCAGAAGAGGTAATTGAGCAGGTTGAGATAAGAACGATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTGGAGTCCTTCTTCGGTCAATATGCCAAGGTCAACAGTGTTCGGTTGCCCCGTCATGTTGGAGACAAAAAGTTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAATGCAAAATGTTTTGAAGCAAAAATTAGTGTATGCGGGCGCTGAGCTAGAATTAAGGCCAAAGCAGGACTTTGACGCAGAAAGAGAAAAAGAATTAGAAAAGCATGAAAAATCTCGTAAGAATGTGGGTTCCAACCACGAGGAGGATAACACAAATACAGAAGAAGACTACCCTAAAGGCTTAGTTATAGCCTTCAAACTAAAGAGCAGTTCAGATGAAGTTCCAGAAAAGAATAATGACGTGACCAAAACAGATGAGCAAAAACCCTCTGAAGTTGCTGCTGAGGAAAGTGATCAAAAGATGTCAGAAAATGATGACAATGATAAAGAAAACAATGGAGTGAACGAAGGAAAGGAGGCTGAAGGCGAAGAAAAGGAGCAAGAGAAAAATAGGGTGAAGGAAGAAAAGGAGACTGAAGTTGAAGAGAAGAGCCTAGAAAACAATGGGGCAGGTGAAGGAAAGGTGACTGAAGGTGCCGAAAAGGGCCAGGAAACTGGGAAAAAAACAGCTGTTATTTTCAAGAACGACTCAGATGTTGTCTTACGTGAAGATTTGAAGGTTGTGTTTCAGAAGTTTGGTGATGTGAAGTACATAGATTTCAATATGGGAGATGAGTCAGGCTTCATTCGGTTTGATGAACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGCCCTTTCGGAAAAGGGGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTTACCGGTGAAGCTGAAAAACAATACTGGAGCCAGCTTCGTGGTAAACAAGATATACGCAGAGAAAGTTTTAGCAACCGAGGAAGGGGAGGAGGAAGGTATGGTAGAGGAGGCAAATTTTCGCGTAATAGAGACAATGATTCTGGACGAGGTCGCCAAAGTAAATATAGAAAGTATTAA
Protein sequence

>Msa0059040

MAKHSLDEETTKKVIRQVEFYFSDSNLPRDDFLSKTVNESEDGMVSLALLCSFNRMRKHLKLADDTKPADVKEETVKAVAEVLKNAASLKLSEDGSKVGRITELPKPEEVIEQVEIRTIAASPFEYTVKLEEVESFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSDEEMQNVLKQKLVYAGAELELRPKQDFDAEREKELEKHEKSRKNVGSNHEEDNTNTEEDYPKGLVIAFKLKSSSDEVPEKNNDVTKTDEQKPSEVAAEESDQKMSENDDNDKENNGVNEGKEAEGEEKEQEKNRVKEEKETEVEEKSLENNGAGEGKVTEGAEKGQETGKKTAVIFKNDSDVVLREDLKVVFQKFGDVKYIDFNMGDESGFIRFDEPEAAQKARAAAALSEKGGLVVKNYIATLDPVTGEAEKQYWSQLRGKQDIRRESFSNRGRGGGRYGRGGKFSRNRDNDSGRGRQSKYRKY*