AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581110 MtrunA17_Chr7g0269271 99.074 108 1 0 1 108 1 108 3.96e-76 229
Msa0581110 MtrunA17_Chr1g0195701 56.757 222 51 6 1 216 1 183 1.47e-72 218
Msa0581110 MtrunA17_Chr6g0465301 51.724 116 56 0 1 116 1 116 2.83e-38 131
Msa0581110 MtrunA17_Chr6g0460991 48.624 109 55 1 1 109 1 108 3.89e-33 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581110 AT4G02450.2 62.832 113 41 1 1 113 1 112 2.19e-48 159
Msa0581110 AT4G02450.1 62.832 113 41 1 1 113 1 112 2.25e-48 159
Msa0581110 AT3G03773.1 43.836 146 77 3 1 143 1 144 5.42e-35 121
Msa0581110 AT3G03773.3 52.212 113 52 2 1 113 1 111 6.41e-35 120
Msa0581110 AT3G03773.2 46.565 131 65 3 1 128 55 183 2.53e-33 119

Find 99 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATAGATTGGGATAAA+TGG 0.128154 4_1:+86455141 Msa0581110:CDS
TGGAAATTGTCACAATATTT+AGG 0.144003 4_1:-86457468 None:intergenic
CAAAATACTTGAATCATTAA+AGG 0.220029 4_1:+86457511 Msa0581110:three_prime_UTR
CACTAACCAAAGAAGGAATT+AGG 0.235168 4_1:+86454071 Msa0581110:five_prime_UTR
TAAAACCCTAATTCCTTCTT+TGG 0.259582 4_1:-86454077 None:intergenic
ATGGGAGGCATGGGCGGCTT+GGG 0.312741 4_1:+86455703 Msa0581110:CDS
CCAGCAGCATCTTGCTCTCC+AGG 0.348935 4_1:-86457124 None:intergenic
GGGCGGCTTGGGAGGAATGA+TGG 0.360240 4_1:+86455714 Msa0581110:CDS
CTCATTATGTGAAAATAGAT+TGG 0.366482 4_1:+86455132 Msa0581110:CDS
ACTAACCAAAGAAGGAATTA+GGG 0.393297 4_1:+86454072 Msa0581110:five_prime_UTR
GAAAAGGTAAAATCACCTTC+TGG 0.394930 4_1:-86454754 None:intergenic
GGCGGCTTGGGAGGAATGAT+GGG 0.395763 4_1:+86455715 Msa0581110:CDS
GAGATTGTACCTCATGTTGT+TGG 0.400473 4_1:-86454136 None:intergenic
TGTGTACTGCAGAAATTTGC+TGG 0.400858 4_1:+86455872 Msa0581110:intron
GAAAATAGATTGGGATAAAT+GGG 0.403064 4_1:+86455142 Msa0581110:CDS
GGAGGCATGGGCGGCTTGGG+AGG 0.412828 4_1:+86455706 Msa0581110:CDS
TTCTGGAGTAAGATCAACTT+TGG 0.412841 4_1:-86454737 None:intergenic
GATGCTGCTGGCAAGAGCGC+TGG 0.414372 4_1:+86457136 Msa0581110:CDS
AATGGGAGGCATGGGCGGCT+TGG 0.421152 4_1:+86455702 Msa0581110:CDS
GGAGGAATGGGAGGCATGGG+CGG 0.422053 4_1:+86455697 Msa0581110:CDS
TGCAAGGTTATTATGTGCTC+GGG 0.426606 4_1:-86457192 None:intergenic
AGATTTATTTAATGCATGAA+TGG 0.431115 4_1:+86457352 Msa0581110:three_prime_UTR
CTGCAAGGTTATTATGTGCT+CGG 0.431755 4_1:-86457193 None:intergenic
AATGGGAGGCATGGGAGGAA+TGG 0.435114 4_1:+86455750 Msa0581110:CDS
GCGGCTTGGGAGGAATGATG+GGG 0.439489 4_1:+86455716 Msa0581110:CDS
GGAGGAATGGGAGGCATGGG+AGG 0.441962 4_1:+86455745 Msa0581110:CDS
CTGCAGAAATTCGGCGGGAT+GGG 0.442879 4_1:+86455658 Msa0581110:intron
GATGATCCAATGGGAGGAAT+GGG 0.449196 4_1:+86455685 Msa0581110:CDS
CGGCTTGGGAGGAATGATGG+GGG 0.450615 4_1:+86455717 Msa0581110:CDS
TTTCTGTCACTAACCAAAGA+AGG 0.451360 4_1:+86454064 Msa0581110:five_prime_UTR
ATGCCTCCCATTCCTCCCAT+TGG 0.456440 4_1:-86455691 None:intergenic
ATGGGAGGAATGGGAGGCAT+GGG 0.458260 4_1:+86455742 Msa0581110:CDS
CATGGGAGGAATGGGAGGCA+TGG 0.459907 4_1:+86455741 Msa0581110:CDS
CTAAACTCATCGCATTGAAC+GGG 0.460491 4_1:+86457565 Msa0581110:three_prime_UTR
ATGGGAGGAATGGGAGGCAT+GGG 0.470038 4_1:+86455694 Msa0581110:CDS
GTCGTCATCCCGAGGTTAAG+TGG 0.476828 4_1:+86454659 Msa0581110:intron
AATGGAAGGACTGGGAGGAA+TGG 0.482020 4_1:+86455768 Msa0581110:CDS
TGTGTACTACTGCAGAAATT+CGG 0.482929 4_1:+86455649 Msa0581110:intron
CATGGGAGGAATGGAAGGAC+TGG 0.485477 4_1:+86455759 Msa0581110:CDS
TCATTATGTGAAAATAGATT+GGG 0.486084 4_1:+86455133 Msa0581110:CDS
AGCACCAGCACTACCAGAAA+AGG 0.488899 4_1:-86454770 None:intergenic
CTCTGTGCCCACTTAACCTC+GGG 0.490812 4_1:-86454667 None:intergenic
CCTGGAGAGCAAGATGCTGC+TGG 0.496634 4_1:+86457124 Msa0581110:CDS
CTGAGAGTGGATGGTGGAAG+AGG 0.498153 4_1:+86455084 Msa0581110:CDS
AATGGGAGGAATGGGAGGCA+TGG 0.503653 4_1:+86455693 Msa0581110:CDS
TTCCTCTTTGTGCCATTCAG+TGG 0.505023 4_1:+86457258 Msa0581110:three_prime_UTR
GATCAAGAAGTGTCAAAGCC+TGG 0.508961 4_1:+86457106 Msa0581110:intron
TGATGATCCAATGGGAGGAA+TGG 0.517095 4_1:+86455684 Msa0581110:CDS
GGAGGCATGGGAGGAATGGA+AGG 0.525417 4_1:+86455754 Msa0581110:CDS
AAGAGGTTGCTGCGTGGAGA+AGG 0.527175 4_1:+86455101 Msa0581110:CDS
ACTGCAGAAATTCGGCGGGA+TGG 0.533257 4_1:+86455657 Msa0581110:intron
GGCTTGGGAGGAATGATGGG+GGG 0.535535 4_1:+86455718 Msa0581110:CDS
TGGGATGGGTGGTGATGCAA+TGG 0.535642 4_1:+86455892 Msa0581110:CDS
TGCTGGCAAGAGCGCTGGTG+AGG 0.538363 4_1:+86457141 Msa0581110:CDS
CATATTCTGTGTAGTGCAGA+AGG 0.542490 4_1:+86455061 Msa0581110:CDS
ACTAAACTCATCGCATTGAA+CGG 0.543164 4_1:+86457564 Msa0581110:three_prime_UTR
ACTGCAGAAATTTGCTGGGA+TGG 0.543444 4_1:+86455877 Msa0581110:intron
GGTCTACATCACAGTGCAGT+TGG 0.544236 4_1:+86454699 Msa0581110:CDS
CTTAAAACTACACCACTGAA+TGG 0.547014 4_1:-86457270 None:intergenic
AAAGTTGATCTTACTCCAGA+AGG 0.549028 4_1:+86454739 Msa0581110:CDS
GATGGGTGGTGATGATCCAA+TGG 0.551280 4_1:+86455675 Msa0581110:CDS
CAGAAATTCGGCGGGATGGG+TGG 0.555897 4_1:+86455661 Msa0581110:intron
TACTACTGCAGAAATTCGGC+GGG 0.556423 4_1:+86455653 Msa0581110:intron
TGCTGTGTTGACTTAACAGT+AGG 0.559983 4_1:+86457315 Msa0581110:three_prime_UTR
GATGAAGATGAGGCTGAAGA+AGG 0.560115 4_1:+86455167 Msa0581110:CDS
CTGCAGAAATTTGCTGGGAT+GGG 0.566994 4_1:+86455878 Msa0581110:intron
GTTGCTGCGTGGAGAAGGCA+AGG 0.570508 4_1:+86455106 Msa0581110:CDS
TCTAGCCAGCGCTGTCTCGA+TGG 0.574127 4_1:+86457387 Msa0581110:three_prime_UTR
TCTTCAAATCTTGCACTGCA+AGG 0.577046 4_1:-86457208 None:intergenic
GTCTCGATGGAAAAGAATGT+TGG 0.578060 4_1:+86457400 Msa0581110:three_prime_UTR
CTTTGACAAGGTTAATGTAG+AGG 0.578313 4_1:+86454825 Msa0581110:CDS
ACTACTGTGATTAAACCTTG+TGG 0.578622 4_1:-86457488 None:intergenic
CAGGAGAGCAAAATCAGTGT+AGG 0.585626 4_1:+86455029 Msa0581110:intron
ATGGGAGGAATGGAAGGACT+GGG 0.592383 4_1:+86455760 Msa0581110:CDS
TGCAGAAGGCTGAGAGTGGA+TGG 0.594343 4_1:+86455075 Msa0581110:CDS
TCTCTGTGCCCACTTAACCT+CGG 0.594623 4_1:-86454668 None:intergenic
GATCCAATGGGAGGAATGGG+AGG 0.596994 4_1:+86455688 Msa0581110:CDS
CAGAAATTTGCTGGGATGGG+TGG 0.597276 4_1:+86455881 Msa0581110:intron
TTTATTTAATGCATGAATGG+CGG 0.605112 4_1:+86457355 Msa0581110:three_prime_UTR
TCGTCATCCCGAGGTTAAGT+GGG 0.605727 4_1:+86454660 Msa0581110:CDS
ATTGACGAGAGTGACGATGA+AGG 0.607086 4_1:+86455920 Msa0581110:CDS
ATGGGTGGTGATGATCCAAT+GGG 0.611795 4_1:+86455676 Msa0581110:CDS
GTGTACTGCAGAAATTTGCT+GGG 0.618065 4_1:+86455873 Msa0581110:intron
CAATCAAATCCAACAACATG+AGG 0.619501 4_1:+86454127 Msa0581110:exon
GTGGGCACAGAGAGTAGACA+AGG 0.620515 4_1:+86454678 Msa0581110:CDS
GTTAAGTCAACACAGCAAAG+AGG 0.628057 4_1:-86457309 None:intergenic
GAAACTTGAGCTCTTTGACA+AGG 0.629398 4_1:+86454813 Msa0581110:CDS
GGAGGAATGGAAGGACTGGG+AGG 0.646274 4_1:+86455763 Msa0581110:CDS
ATGATGCAGTCGTCATCCCG+AGG 0.646727 4_1:+86454651 Msa0581110:intron
CACCACTGAATGGCACAAAG+AGG 0.647026 4_1:-86457260 None:intergenic
TAAATGGGTCGATGAAGATG+AGG 0.649358 4_1:+86455157 Msa0581110:CDS
GTACTACTGCAGAAATTCGG+CGG 0.650088 4_1:+86455652 Msa0581110:intron
GTAGTGCAGAAGGCTGAGAG+TGG 0.686588 4_1:+86455071 Msa0581110:CDS
GGTGGTGATGATCCAATGGG+AGG 0.688264 4_1:+86455679 Msa0581110:CDS
ATATTGTGACAATTTCCACA+AGG 0.689071 4_1:+86457473 Msa0581110:three_prime_UTR
GCAAGGTTATTATGTGCTCG+GGG 0.703220 4_1:-86457191 None:intergenic
ACACAGCAAAGAGGACACAA+AGG 0.705271 4_1:-86457300 None:intergenic
AGAAGGCTGAGAGTGGATGG+TGG 0.722955 4_1:+86455078 Msa0581110:CDS
TGGTGGAAGAGGTTGCTGCG+TGG 0.748724 4_1:+86455095 Msa0581110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTGATATTAATTTTT+AGG + chr4_1:86455363-86455382 Msa0581110:intron 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr4_1:86456380-86456399 Msa0581110:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr4_1:86456381-86456400 Msa0581110:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG - chr4_1:86456429-86456448 None:intergenic 10.0%
!! TATCCATTAAAAAAATTCAA+AGG - chr4_1:86455207-86455226 None:intergenic 15.0%
!!! TTTGAATTTTTTTAATGGAT+AGG + chr4_1:86455206-86455225 Msa0581110:intron 15.0%
!! TCTAAATTAATAAATTTCTC+CGG - chr4_1:86456096-86456115 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr4_1:86456457-86456476 Msa0581110:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr4_1:86456495-86456514 None:intergenic 15.0%
!! AGATTATTAATTTCAATTTG+AGG + chr4_1:86456833-86456852 Msa0581110:intron 15.0%
!! GATTATTAATTTCAATTTGA+GGG + chr4_1:86456834-86456853 Msa0581110:intron 15.0%
!! AAACTATGAAACAAAATGTT+AGG + chr4_1:86454398-86454417 Msa0581110:intron 20.0%
!! AACTATGAAACAAAATGTTA+GGG + chr4_1:86454399-86454418 Msa0581110:intron 20.0%
!!! TTATTAGAGCTGTTTTAAAA+TGG + chr4_1:86454581-86454600 Msa0581110:intron 20.0%
!!! GTTTTGATTTATATGCTTAT+CGG + chr4_1:86454612-86454631 Msa0581110:intron 20.0%
!! TCATTATGTGAAAATAGATT+GGG + chr4_1:86455133-86455152 Msa0581110:CDS 20.0%
!!! TGTCCTTTGAATTTTTTTAA+TGG + chr4_1:86455201-86455220 Msa0581110:intron 20.0%
!!! GGACAACAATATATTTTTAT+TGG + chr4_1:86455227-86455246 Msa0581110:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG + chr4_1:86456069-86456088 Msa0581110:intron 20.0%
!! AAACTCTTTGAATTAATACT+CGG - chr4_1:86456533-86456552 None:intergenic 20.0%
!! TAAGAAAAAGGAAATTAAAG+GGG - chr4_1:86456943-86456962 None:intergenic 20.0%
!! CTAAGAAAAAGGAAATTAAA+GGG - chr4_1:86456944-86456963 None:intergenic 20.0%
!! ACTAAGAAAAAGGAAATTAA+AGG - chr4_1:86456945-86456964 None:intergenic 20.0%
!! AGATTTATTTAATGCATGAA+TGG + chr4_1:86457352-86457371 Msa0581110:three_prime_UTR 20.0%
!! CAAAATACTTGAATCATTAA+AGG + chr4_1:86457511-86457530 Msa0581110:three_prime_UTR 20.0%
!! ACTTGTCTTTTCAATTGATT+TGG + chr4_1:86454285-86454304 Msa0581110:intron 25.0%
! ACTATGAAACAAAATGTTAG+GGG + chr4_1:86454400-86454419 Msa0581110:intron 25.0%
! ATAATTAAATCATGCCTCTA+TGG + chr4_1:86454436-86454455 Msa0581110:intron 25.0%
! CTTTCTTGTATATGACTATT+TGG + chr4_1:86454527-86454546 Msa0581110:intron 25.0%
!!! AAGATCAACTTTGGAATTTT+TGG - chr4_1:86454731-86454750 None:intergenic 25.0%
!! CAATCTATTTTCACATAATG+AGG - chr4_1:86455134-86455153 None:intergenic 25.0%
! CTCATTATGTGAAAATAGAT+TGG + chr4_1:86455132-86455151 Msa0581110:CDS 25.0%
! TGAAAATAGATTGGGATAAA+TGG + chr4_1:86455141-86455160 Msa0581110:CDS 25.0%
! GAAAATAGATTGGGATAAAT+GGG + chr4_1:86455142-86455161 Msa0581110:CDS 25.0%
! ATCAACAAAATGATACAACT+GGG - chr4_1:86455353-86455372 None:intergenic 25.0%
! TATCAACAAAATGATACAAC+TGG - chr4_1:86455354-86455373 None:intergenic 25.0%
! AGAAATATTGTAGTGAGAAA+TGG - chr4_1:86455509-86455528 None:intergenic 25.0%
!!! CATGATACTTAGATTTTTTG+TGG + chr4_1:86456020-86456039 Msa0581110:intron 25.0%
! TAAATTAATAATGTCAGGAC+CGG + chr4_1:86456074-86456093 Msa0581110:intron 25.0%
! ACTGTACATACTAAACAAAA+AGG + chr4_1:86456176-86456195 Msa0581110:intron 25.0%
!!! GACAATGTAGCTTTAAATAT+TGG + chr4_1:86456615-86456634 Msa0581110:intron 25.0%
! AAGAAAAAGGAAATTAAAGG+GGG - chr4_1:86456942-86456961 None:intergenic 25.0%
! ACACTTCTTGATCTATAATT+GGG - chr4_1:86457099-86457118 None:intergenic 25.0%
! TTTATTTAATGCATGAATGG+CGG + chr4_1:86457355-86457374 Msa0581110:three_prime_UTR 25.0%
! TGGAAATTGTCACAATATTT+AGG - chr4_1:86457471-86457490 None:intergenic 25.0%
ACTAACCAAAGAAGGAATTA+GGG + chr4_1:86454072-86454091 Msa0581110:five_prime_UTR 30.0%
TAAAACCCTAATTCCTTCTT+TGG - chr4_1:86454080-86454099 None:intergenic 30.0%
! AAGAAGGAATTAGGGTTTTA+CGG + chr4_1:86454080-86454099 Msa0581110:five_prime_UTR 30.0%
GATTGAAGATGAGAAAAAAG+AGG - chr4_1:86454112-86454131 None:intergenic 30.0%
AACAAGTCGTCAAATTCAAA+GGG - chr4_1:86454334-86454353 None:intergenic 30.0%
AAACAAGTCGTCAAATTCAA+AGG - chr4_1:86454335-86454354 None:intergenic 30.0%
!!! CTGTTTTAAAATGGATGTGT+TGG + chr4_1:86454590-86454609 Msa0581110:intron 30.0%
CTATGTCCTAAAATGAAAGA+TGG + chr4_1:86454853-86454872 Msa0581110:intron 30.0%
! TAAGGACCATCTTTCATTTT+AGG - chr4_1:86454862-86454881 None:intergenic 30.0%
CATTCAGGTAAACATTCATA+AGG - chr4_1:86454880-86454899 None:intergenic 30.0%
! TTACCTGAATGAGTTGAATA+AGG + chr4_1:86454889-86454908 Msa0581110:intron 30.0%
!!! AAGCATTTTTAGAATGGTTG+TGG + chr4_1:86454950-86454969 Msa0581110:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + chr4_1:86455426-86455445 Msa0581110:intron 30.0%
!! CTATTTCTAACCTCTTCAAT+TGG + chr4_1:86455527-86455546 Msa0581110:intron 30.0%
CAACGTAAAACATCAATAGA+AGG - chr4_1:86455622-86455641 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG + chr4_1:86456307-86456326 Msa0581110:intron 30.0%
! ATATGCTTTTATGTAGAAGC+AGG + chr4_1:86456561-86456580 Msa0581110:intron 30.0%
TAAAGTTCGTTGTTAACATG+AGG + chr4_1:86456644-86456663 Msa0581110:intron 30.0%
AAAGTTCGTTGTTAACATGA+GGG + chr4_1:86456645-86456664 Msa0581110:intron 30.0%
ATGTCAAGCAACTAAGAAAA+AGG - chr4_1:86456955-86456974 None:intergenic 30.0%
! TTTTTCTTAGTTGCTTGACA+TGG + chr4_1:86456954-86456973 Msa0581110:intron 30.0%
! TGAGCATCTAGTTCAAAAAA+GGG - chr4_1:86457015-86457034 None:intergenic 30.0%
! ATGAGCATCTAGTTCAAAAA+AGG - chr4_1:86457016-86457035 None:intergenic 30.0%
TGATCTATAATTGGGAAACA+CGG - chr4_1:86457091-86457110 None:intergenic 30.0%
GACACTTCTTGATCTATAAT+TGG - chr4_1:86457100-86457119 None:intergenic 30.0%
ATATTGTGACAATTTCCACA+AGG + chr4_1:86457473-86457492 Msa0581110:three_prime_UTR 30.0%
TTTCTGTCACTAACCAAAGA+AGG + chr4_1:86454064-86454083 Msa0581110:five_prime_UTR 35.0%
CACTAACCAAAGAAGGAATT+AGG + chr4_1:86454071-86454090 Msa0581110:five_prime_UTR 35.0%
GAAGATGAGAAAAAAGAGGT+AGG - chr4_1:86454108-86454127 None:intergenic 35.0%
CAATCAAATCCAACAACATG+AGG + chr4_1:86454127-86454146 Msa0581110:exon 35.0%
CTTATGTGATGAAATCGGAA+GGG - chr4_1:86454219-86454238 None:intergenic 35.0%
CCAAGCTTATGTGATGAAAT+CGG - chr4_1:86454224-86454243 None:intergenic 35.0%
TCAAAGGGTGAGTAACAAAT+CGG - chr4_1:86454319-86454338 None:intergenic 35.0%
!! ACAAAATGTTAGGGGTATCT+TGG + chr4_1:86454408-86454427 Msa0581110:intron 35.0%
ATCTGCATCAATTACCATAG+AGG - chr4_1:86454453-86454472 None:intergenic 35.0%
GTAATTGATGCAGATTGTGA+TGG + chr4_1:86454458-86454477 Msa0581110:intron 35.0%
!! TTCTGGAGTAAGATCAACTT+TGG - chr4_1:86454740-86454759 None:intergenic 35.0%
! AAAGTTGATCTTACTCCAGA+AGG + chr4_1:86454739-86454758 Msa0581110:CDS 35.0%
GAAAAGGTAAAATCACCTTC+TGG - chr4_1:86454757-86454776 None:intergenic 35.0%
! GAAGGTGATTTTACCTTTTC+TGG + chr4_1:86454757-86454776 Msa0581110:CDS 35.0%
CTTTGACAAGGTTAATGTAG+AGG + chr4_1:86454825-86454844 Msa0581110:CDS 35.0%
AGTCCTTATTCAACTCATTC+AGG - chr4_1:86454895-86454914 None:intergenic 35.0%
ATGCTTTGCTTGCAAAGATA+TGG + chr4_1:86454975-86454994 Msa0581110:intron 35.0%
GAAATCTGATCGAATTGTCT+CGG + chr4_1:86455249-86455268 Msa0581110:intron 35.0%
TTCCTTAACAAGTGCCTTAA+GGG - chr4_1:86455414-86455433 None:intergenic 35.0%
TTTCCTTAACAAGTGCCTTA+AGG - chr4_1:86455415-86455434 None:intergenic 35.0%
TTTCTAACCTCTTCAATTGG+TGG + chr4_1:86455530-86455549 Msa0581110:intron 35.0%
TTCTAACCTCTTCAATTGGT+GGG + chr4_1:86455531-86455550 Msa0581110:intron 35.0%
GTAAAATTCCATCTGTCCAA+TGG - chr4_1:86455569-86455588 None:intergenic 35.0%
TGTGTACTACTGCAGAAATT+CGG + chr4_1:86455649-86455668 Msa0581110:intron 35.0%
CTGTTTATGCACATGATACT+TGG + chr4_1:86455982-86456001 Msa0581110:intron 35.0%
CTAATTTACGTTAAGTCCCA+AGG - chr4_1:86456241-86456260 None:intergenic 35.0%
ACTACTGTGTTCATATGCAT+TGG + chr4_1:86456263-86456282 Msa0581110:intron 35.0%
TTGGGACCGAAAATTGTAAA+GGG + chr4_1:86456399-86456418 Msa0581110:intron 35.0%
! GGAGATCCCTTTACAATTTT+CGG - chr4_1:86456408-86456427 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG + chr4_1:86456467-86456486 Msa0581110:intron 35.0%
! GAGCATCTAGTTCAAAAAAG+GGG - chr4_1:86457014-86457033 None:intergenic 35.0%
GATCTATAATTGGGAAACAC+GGG - chr4_1:86457090-86457109 None:intergenic 35.0%
CTTAAAACTACACCACTGAA+TGG - chr4_1:86457273-86457292 None:intergenic 35.0%
!!! TTCAGTGGTGTAGTTTTAAG+TGG + chr4_1:86457273-86457292 Msa0581110:three_prime_UTR 35.0%
!!! TCAGTGGTGTAGTTTTAAGT+GGG + chr4_1:86457274-86457293 Msa0581110:three_prime_UTR 35.0%
ACTACTGTGATTAAACCTTG+TGG - chr4_1:86457491-86457510 None:intergenic 35.0%
ACTAAACTCATCGCATTGAA+CGG + chr4_1:86457564-86457583 Msa0581110:three_prime_UTR 35.0%
GAGATTGTACCTCATGTTGT+TGG - chr4_1:86454139-86454158 None:intergenic 40.0%
GCTTATGTGATGAAATCGGA+AGG - chr4_1:86454220-86454239 None:intergenic 40.0%
CCGATTTCATCACATAAGCT+TGG + chr4_1:86454221-86454240 Msa0581110:intron 40.0%
GCAGATTGTGATGGCAAATT+TGG + chr4_1:86454467-86454486 Msa0581110:intron 40.0%
!! TTTACCTTTTCTGGTAGTGC+TGG + chr4_1:86454766-86454785 Msa0581110:CDS 40.0%
GAAACTTGAGCTCTTTGACA+AGG + chr4_1:86454813-86454832 Msa0581110:CDS 40.0%
!! GGTCGCAAGCATTTTTAGAA+TGG + chr4_1:86454944-86454963 Msa0581110:intron 40.0%
CTGCAATCAAAGAGTCATGA+AGG - chr4_1:86455012-86455031 None:intergenic 40.0%
CTTCATGACTCTTTGATTGC+AGG + chr4_1:86455010-86455029 Msa0581110:intron 40.0%
CATATTCTGTGTAGTGCAGA+AGG + chr4_1:86455061-86455080 Msa0581110:CDS 40.0%
TAAATGGGTCGATGAAGATG+AGG + chr4_1:86455157-86455176 Msa0581110:CDS 40.0%
! CGAATTGTCTCGGTTTTTGT+TGG + chr4_1:86455259-86455278 Msa0581110:intron 40.0%
! CAATGCAAGCCTACTACTTT+TGG - chr4_1:86455438-86455457 None:intergenic 40.0%
CAAAAGTAGTAGGCTTGCAT+TGG + chr4_1:86455436-86455455 Msa0581110:intron 40.0%
TCTAACCTCTTCAATTGGTG+GGG + chr4_1:86455532-86455551 Msa0581110:intron 40.0%
GATATGATCCATTGGACAGA+TGG + chr4_1:86455558-86455577 Msa0581110:intron 40.0%
TGTGTACTGCAGAAATTTGC+TGG + chr4_1:86455872-86455891 Msa0581110:intron 40.0%
! GTGTACTGCAGAAATTTGCT+GGG + chr4_1:86455873-86455892 Msa0581110:intron 40.0%
CTTGGGACCGAAAATTGTAA+AGG + chr4_1:86456398-86456417 Msa0581110:intron 40.0%
! TTTTTACATTGGCCCAAGTC+GGG + chr4_1:86456468-86456487 Msa0581110:intron 40.0%
CGTTGTTAACATGAGGGTTA+AGG + chr4_1:86456651-86456670 Msa0581110:intron 40.0%
!! TCAATTTGAGGGCATTCACT+TGG + chr4_1:86456845-86456864 Msa0581110:intron 40.0%
!! CAATTTGAGGGCATTCACTT+GGG + chr4_1:86456846-86456865 Msa0581110:intron 40.0%
GAAAGGGGGTTAAAGAAAAG+AGG + chr4_1:86456868-86456887 Msa0581110:intron 40.0%
TAGTTGCTTGACATGGCTAT+TGG + chr4_1:86456961-86456980 Msa0581110:intron 40.0%
AGTTGCTTGACATGGCTATT+GGG + chr4_1:86456962-86456981 Msa0581110:intron 40.0%
TGCAAGGTTATTATGTGCTC+GGG - chr4_1:86457195-86457214 None:intergenic 40.0%
CTGCAAGGTTATTATGTGCT+CGG - chr4_1:86457196-86457215 None:intergenic 40.0%
TCTTCAAATCTTGCACTGCA+AGG - chr4_1:86457211-86457230 None:intergenic 40.0%
GTTAAGTCAACACAGCAAAG+AGG - chr4_1:86457312-86457331 None:intergenic 40.0%
!! TGCTGTGTTGACTTAACAGT+AGG + chr4_1:86457315-86457334 Msa0581110:three_prime_UTR 40.0%
GTCTCGATGGAAAAGAATGT+TGG + chr4_1:86457400-86457419 Msa0581110:three_prime_UTR 40.0%
CTAAACTCATCGCATTGAAC+GGG + chr4_1:86457565-86457584 Msa0581110:three_prime_UTR 40.0%
! TGATACTAGCCTGCTTATGC+TGG + chr4_1:86454920-86454939 Msa0581110:intron 45.0%
CAGGAGAGCAAAATCAGTGT+AGG + chr4_1:86455029-86455048 Msa0581110:intron 45.0%
GATGAAGATGAGGCTGAAGA+AGG + chr4_1:86455167-86455186 Msa0581110:CDS 45.0%
! TGTCTCGGTTTTTGTTGGTC+AGG + chr4_1:86455264-86455283 Msa0581110:intron 45.0%
!! TGATGTTGACTTGGGAGGAA+TGG + chr4_1:86455293-86455312 Msa0581110:intron 45.0%
! CTTGGGAGGAATGGATTTCT+CGG + chr4_1:86455302-86455321 Msa0581110:intron 45.0%
AAATGCCACAAGTGCCCTTA+AGG + chr4_1:86455397-86455416 Msa0581110:intron 45.0%
! TGCCCTTAAGGCACTTGTTA+AGG + chr4_1:86455409-86455428 Msa0581110:intron 45.0%
TGGGGTGTGATATGATCCAT+TGG + chr4_1:86455550-86455569 Msa0581110:intron 45.0%
GTACTACTGCAGAAATTCGG+CGG + chr4_1:86455652-86455671 Msa0581110:intron 45.0%
TACTACTGCAGAAATTCGGC+GGG + chr4_1:86455653-86455672 Msa0581110:intron 45.0%
! ATGGGTGGTGATGATCCAAT+GGG + chr4_1:86455676-86455695 Msa0581110:CDS 45.0%
TGATGATCCAATGGGAGGAA+TGG + chr4_1:86455684-86455703 Msa0581110:CDS 45.0%
GATGATCCAATGGGAGGAAT+GGG + chr4_1:86455685-86455704 Msa0581110:CDS 45.0%
!! ACTGCAGAAATTTGCTGGGA+TGG + chr4_1:86455877-86455896 Msa0581110:intron 45.0%
!! CTGCAGAAATTTGCTGGGAT+GGG + chr4_1:86455878-86455897 Msa0581110:intron 45.0%
ATTGACGAGAGTGACGATGA+AGG + chr4_1:86455920-86455939 Msa0581110:CDS 45.0%
CGCTGCAACGTAATTCTAAG+AGG - chr4_1:86456216-86456235 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG + chr4_1:86456221-86456240 Msa0581110:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG + chr4_1:86456222-86456241 Msa0581110:intron 45.0%
! AAGGATGTTAGCTCGAGTTG+CGG + chr4_1:86456670-86456689 Msa0581110:intron 45.0%
!! GATCAAGAAGTGTCAAAGCC+TGG + chr4_1:86457106-86457125 Msa0581110:intron 45.0%
GCAAGGTTATTATGTGCTCG+GGG - chr4_1:86457194-86457213 None:intergenic 45.0%
! TTCCTCTTTGTGCCATTCAG+TGG + chr4_1:86457258-86457277 Msa0581110:three_prime_UTR 45.0%
ACACAGCAAAGAGGACACAA+AGG - chr4_1:86457303-86457322 None:intergenic 45.0%
!!! ATAATAAGATAATAATTTTT+CGG - chr4_1:86456430-86456449 None:intergenic 5.0%
TCGTCATCCCGAGGTTAAGT+GGG + chr4_1:86454660-86454679 Msa0581110:CDS 50.0%
TCTCTGTGCCCACTTAACCT+CGG - chr4_1:86454671-86454690 None:intergenic 50.0%
GGTCTACATCACAGTGCAGT+TGG + chr4_1:86454699-86454718 Msa0581110:CDS 50.0%
AGCACCAGCACTACCAGAAA+AGG - chr4_1:86454773-86454792 None:intergenic 50.0%
!!! TTTTCTGGTAGTGCTGGTGC+TGG + chr4_1:86454772-86454791 Msa0581110:CDS 50.0%
! TACTAGCCTGCTTATGCTGG+TGG + chr4_1:86454923-86454942 Msa0581110:intron 50.0%
! CTCGGTTTTTGTTGGTCAGG+TGG + chr4_1:86455267-86455286 Msa0581110:intron 50.0%
! GGTTTTTGTTGGTCAGGTGG+TGG + chr4_1:86455270-86455289 Msa0581110:intron 50.0%
! AGGTGGTGGTGATGTTGACT+TGG + chr4_1:86455284-86455303 Msa0581110:intron 50.0%
!! GGTGGTGGTGATGTTGACTT+GGG + chr4_1:86455285-86455304 Msa0581110:intron 50.0%
!! AAGTGCCTTAAGGGCACTTG+TGG - chr4_1:86455405-86455424 None:intergenic 50.0%
TCACACCCCACCAATTGAAG+AGG - chr4_1:86455540-86455559 None:intergenic 50.0%
! GATGGGTGGTGATGATCCAA+TGG + chr4_1:86455675-86455694 Msa0581110:CDS 50.0%
ATGGGAGGAATGGAAGGACT+GGG + chr4_1:86455760-86455779 Msa0581110:CDS 50.0%
AATGGAAGGACTGGGAGGAA+TGG + chr4_1:86455768-86455787 Msa0581110:CDS 50.0%
!! CAGAAATTTGCTGGGATGGG+TGG + chr4_1:86455881-86455900 Msa0581110:intron 50.0%
AATTTGTCCGGTCCCGACTT+GGG - chr4_1:86456483-86456502 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG - chr4_1:86456484-86456503 None:intergenic 50.0%
!! TGAGGGCATTCACTTGGGAA+AGG + chr4_1:86456851-86456870 Msa0581110:intron 50.0%
!! GAGGGCATTCACTTGGGAAA+GGG + chr4_1:86456852-86456871 Msa0581110:intron 50.0%
! AGGGCATTCACTTGGGAAAG+GGG + chr4_1:86456853-86456872 Msa0581110:intron 50.0%
CACCACTGAATGGCACAAAG+AGG - chr4_1:86457263-86457282 None:intergenic 50.0%
ATGATGCAGTCGTCATCCCG+AGG + chr4_1:86454651-86454670 Msa0581110:intron 55.0%
GTCGTCATCCCGAGGTTAAG+TGG + chr4_1:86454659-86454678 Msa0581110:intron 55.0%
CTCTGTGCCCACTTAACCTC+GGG - chr4_1:86454670-86454689 None:intergenic 55.0%
GTGGGCACAGAGAGTAGACA+AGG + chr4_1:86454678-86454697 Msa0581110:CDS 55.0%
TTGCGACCACCAGCATAAGC+AGG - chr4_1:86454932-86454951 None:intergenic 55.0%
GTAGTGCAGAAGGCTGAGAG+TGG + chr4_1:86455071-86455090 Msa0581110:CDS 55.0%
TGCAGAAGGCTGAGAGTGGA+TGG + chr4_1:86455075-86455094 Msa0581110:CDS 55.0%
AGAAGGCTGAGAGTGGATGG+TGG + chr4_1:86455078-86455097 Msa0581110:CDS 55.0%
!! CTGAGAGTGGATGGTGGAAG+AGG + chr4_1:86455084-86455103 Msa0581110:CDS 55.0%
AAGAGGTTGCTGCGTGGAGA+AGG + chr4_1:86455101-86455120 Msa0581110:CDS 55.0%
!! GGTGGTGATGTTGACTTGGG+AGG + chr4_1:86455288-86455307 Msa0581110:intron 55.0%
ACTGCAGAAATTCGGCGGGA+TGG + chr4_1:86455657-86455676 Msa0581110:intron 55.0%
CTGCAGAAATTCGGCGGGAT+GGG + chr4_1:86455658-86455677 Msa0581110:intron 55.0%
! GGTGGTGATGATCCAATGGG+AGG + chr4_1:86455679-86455698 Msa0581110:CDS 55.0%
GATCCAATGGGAGGAATGGG+AGG + chr4_1:86455688-86455707 Msa0581110:CDS 55.0%
ATGCCTCCCATTCCTCCCAT+TGG - chr4_1:86455694-86455713 None:intergenic 55.0%
AATGGGAGGAATGGGAGGCA+TGG + chr4_1:86455693-86455712 Msa0581110:CDS 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG + chr4_1:86455694-86455713 Msa0581110:CDS 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG + chr4_1:86455694-86455713 Msa0581110:CDS 55.0%
! AATGGGAGGCATGGGAGGAA+TGG + chr4_1:86455750-86455769 Msa0581110:CDS 55.0%
CATGGGAGGAATGGAAGGAC+TGG + chr4_1:86455759-86455778 Msa0581110:CDS 55.0%
! TGGGATGGGTGGTGATGCAA+TGG + chr4_1:86455892-86455911 Msa0581110:CDS 55.0%
! GTTAGCTCGAGTTGCGGAAG+TGG + chr4_1:86456676-86456695 Msa0581110:intron 55.0%
GGGCATTCACTTGGGAAAGG+GGG + chr4_1:86456854-86456873 Msa0581110:intron 55.0%
! CTTTTCCATCGAGACAGCGC+TGG - chr4_1:86457395-86457414 None:intergenic 55.0%
TGGTGGAAGAGGTTGCTGCG+TGG + chr4_1:86455095-86455114 Msa0581110:CDS 60.0%
GTTGCTGCGTGGAGAAGGCA+AGG + chr4_1:86455106-86455125 Msa0581110:CDS 60.0%
CAGAAATTCGGCGGGATGGG+TGG + chr4_1:86455661-86455680 Msa0581110:intron 60.0%
! GGCGGCTTGGGAGGAATGAT+GGG + chr4_1:86455715-86455734 Msa0581110:CDS 60.0%
! GCGGCTTGGGAGGAATGATG+GGG + chr4_1:86455716-86455735 Msa0581110:CDS 60.0%
! CGGCTTGGGAGGAATGATGG+GGG + chr4_1:86455717-86455736 Msa0581110:CDS 60.0%
! GGCTTGGGAGGAATGATGGG+GGG + chr4_1:86455718-86455737 Msa0581110:CDS 60.0%
! GGAGGAATGATGGGGGGCAT+GGG + chr4_1:86455724-86455743 Msa0581110:CDS 60.0%
! ATGGGGGGCATGGGAGGAAT+GGG + chr4_1:86455733-86455752 Msa0581110:CDS 60.0%
CATGGGAGGAATGGGAGGCA+TGG + chr4_1:86455741-86455760 Msa0581110:CDS 60.0%
! GGAGGCATGGGAGGAATGGA+AGG + chr4_1:86455754-86455773 Msa0581110:CDS 60.0%
GGAGGAATGGAAGGACTGGG+AGG + chr4_1:86455763-86455782 Msa0581110:CDS 60.0%
ACATTGGCCCAAGTCGGGAC+CGG + chr4_1:86456473-86456492 Msa0581110:intron 60.0%
CCAGCAGCATCTTGCTCTCC+AGG - chr4_1:86457127-86457146 None:intergenic 60.0%
CCTGGAGAGCAAGATGCTGC+TGG + chr4_1:86457124-86457143 Msa0581110:CDS 60.0%
TCTAGCCAGCGCTGTCTCGA+TGG + chr4_1:86457387-86457406 Msa0581110:three_prime_UTR 60.0%
! GGAGGAATGGGAGGCATGGG+CGG + chr4_1:86455697-86455716 Msa0581110:CDS 65.0%
! AATGGGAGGCATGGGCGGCT+TGG + chr4_1:86455702-86455721 Msa0581110:CDS 65.0%
! ATGGGAGGCATGGGCGGCTT+GGG + chr4_1:86455703-86455722 Msa0581110:CDS 65.0%
! GGGCGGCTTGGGAGGAATGA+TGG + chr4_1:86455714-86455733 Msa0581110:CDS 65.0%
! GGGAGGAATGATGGGGGGCA+TGG + chr4_1:86455723-86455742 Msa0581110:CDS 65.0%
! GGAATGATGGGGGGCATGGG+AGG + chr4_1:86455727-86455746 Msa0581110:CDS 65.0%
! GATGGGGGGCATGGGAGGAA+TGG + chr4_1:86455732-86455751 Msa0581110:CDS 65.0%
! GGAGGAATGGGAGGCATGGG+AGG + chr4_1:86455697-86455716 Msa0581110:CDS 65.0%
! GATGCTGCTGGCAAGAGCGC+TGG + chr4_1:86457136-86457155 Msa0581110:CDS 65.0%
!! TGCTGGCAAGAGCGCTGGTG+AGG + chr4_1:86457141-86457160 Msa0581110:CDS 65.0%
! GGGGGCATGGGAGGAATGGG+AGG + chr4_1:86455736-86455755 Msa0581110:CDS 70.0%
! GGAGGCATGGGCGGCTTGGG+AGG + chr4_1:86455706-86455725 Msa0581110:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86454057 86457604 86454057 ID=Msa0581110;Name=Msa0581110
chr4_1 mRNA 86454057 86457604 86454057 ID=Msa0581110-mRNA-1;Parent=Msa0581110;Name=Msa0581110-mRNA-1;_AED=0.19;_eAED=0.19;_QI=87|0.83|0.85|1|1|1|7|400|216
chr4_1 exon 86454057 86454148 86454057 ID=Msa0581110-mRNA-1:exon:31929;Parent=Msa0581110-mRNA-1
chr4_1 exon 86454660 86454846 86454660 ID=Msa0581110-mRNA-1:exon:31930;Parent=Msa0581110-mRNA-1
chr4_1 exon 86455032 86455188 86455032 ID=Msa0581110-mRNA-1:exon:31931;Parent=Msa0581110-mRNA-1
chr4_1 exon 86455286 86455296 86455286 ID=Msa0581110-mRNA-1:exon:31932;Parent=Msa0581110-mRNA-1
chr4_1 exon 86455664 86455798 86455664 ID=Msa0581110-mRNA-1:exon:31933;Parent=Msa0581110-mRNA-1
chr4_1 exon 86455884 86455941 86455884 ID=Msa0581110-mRNA-1:exon:31934;Parent=Msa0581110-mRNA-1
chr4_1 exon 86457107 86457604 86457107 ID=Msa0581110-mRNA-1:exon:31935;Parent=Msa0581110-mRNA-1
chr4_1 five_prime_UTR 86454057 86454143 86454057 ID=Msa0581110-mRNA-1:five_prime_utr;Parent=Msa0581110-mRNA-1
chr4_1 CDS 86454144 86454148 86454144 ID=Msa0581110-mRNA-1:cds;Parent=Msa0581110-mRNA-1
chr4_1 CDS 86454660 86454846 86454660 ID=Msa0581110-mRNA-1:cds;Parent=Msa0581110-mRNA-1
chr4_1 CDS 86455032 86455188 86455032 ID=Msa0581110-mRNA-1:cds;Parent=Msa0581110-mRNA-1
chr4_1 CDS 86455286 86455296 86455286 ID=Msa0581110-mRNA-1:cds;Parent=Msa0581110-mRNA-1
chr4_1 CDS 86455664 86455798 86455664 ID=Msa0581110-mRNA-1:cds;Parent=Msa0581110-mRNA-1
chr4_1 CDS 86455884 86455941 86455884 ID=Msa0581110-mRNA-1:cds;Parent=Msa0581110-mRNA-1
chr4_1 CDS 86457107 86457204 86457107 ID=Msa0581110-mRNA-1:cds;Parent=Msa0581110-mRNA-1
chr4_1 three_prime_UTR 86457205 86457604 86457205 ID=Msa0581110-mRNA-1:three_prime_utr;Parent=Msa0581110-mRNA-1
Gene Sequence

>Msa0581110

ATGAGTCGTCATCCCGAGGTTAAGTGGGCACAGAGAGTAGACAAGGTCTACATCACAGTGCAGTTGGCTGATTCCAAAAATTCCAAAGTTGATCTTACTCCAGAAGGTGATTTTACCTTTTCTGGTAGTGCTGGTGCTGGAGACAATCAGTATGAGCTGAAACTTGAGCTCTTTGACAAGGTTAATGTAGAGGAGAGCAAAATCAGTGTAGGAGTGCGAAACATATTCTGTGTAGTGCAGAAGGCTGAGAGTGGATGGTGGAAGAGGTTGCTGCGTGGAGAAGGCAAGGCTCCTCATTATGTGAAAATAGATTGGGATAAATGGGTCGATGAAGATGAGGCTGAAGAAGGTGGTGGTGATAAATTCGGCGGGATGGGTGGTGATGATCCAATGGGAGGAATGGGAGGCATGGGCGGCTTGGGAGGAATGATGGGGGGCATGGGAGGAATGGGAGGCATGGGAGGAATGGAAGGACTGGGAGGAATGGACTTCTCTAAATTTGCTGGGATGGGTGGTGATGCAATGGATGATATTGACGAGAGTGACGATGAAGATCAAGAAGTGTCAAAGCCTGGAGAGCAAGATGCTGCTGGCAAGAGCGCTGGTGAGGCAGCTACAGAGAGTAAAGTAGAAGCTACCCCGAGCACATAA

Protein sequence

>Msa0581110

MSRHPEVKWAQRVDKVYITVQLADSKNSKVDLTPEGDFTFSGSAGAGDNQYELKLELFDKVNVEESKISVGVRNIFCVVQKAESGWWKRLLRGEGKAPHYVKIDWDKWVDEDEAEEGGGDKFGGMGGDDPMGGMGGMGGLGGMMGGMGGMGGMGGMEGLGGMDFSKFAGMGGDAMDDIDESDDEDQEVSKPGEQDAAGKSAGEAATESKVEATPST*