AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165940 MtrunA17_Chr1g0195701 52.252 222 47 8 1 202 1 183 8.55e-60 185
Msa1165940 MtrunA17_Chr7g0269271 84.259 108 3 2 1 94 1 108 1.19e-58 184
Msa1165940 MtrunA17_Chr6g0465301 45.690 116 49 1 1 102 1 116 3.90e-28 104
Msa1165940 MtrunA17_Chr6g0460991 42.593 108 49 1 1 95 1 108 7.82e-26 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165940 AT4G02450.2 54.867 113 36 2 1 99 1 112 5.47e-37 129
Msa1165940 AT4G02450.1 54.867 113 36 2 1 99 1 112 5.61e-37 129
Msa1165940 AT3G03773.1 40.000 145 70 3 1 129 1 144 2.25e-28 104
Msa1165940 AT3G03773.3 47.321 112 45 2 1 99 1 111 5.47e-28 102
Msa1165940 AT3G03773.2 39.310 145 71 3 1 129 55 198 1.49e-26 101

Find 96 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGATCAACTTTGGAATTT+TGG 0.115268 7_4:-57984886 None:intergenic
TGAAAATAGATTGGGATAAA+TGG 0.128154 7_4:+57985298 Msa1165940:CDS
TGGAAATTGTCACAATATTT+AGG 0.144003 7_4:-57987625 None:intergenic
CAAAATACTTGAATCATTAA+AGG 0.220029 7_4:+57987668 Msa1165940:three_prime_UTR
CACTAACCAAAGAAGGAATT+AGG 0.235168 7_4:+57984228 Msa1165940:five_prime_UTR
TAAAACCCTAATTCCTTCTT+TGG 0.259582 7_4:-57984234 None:intergenic
ATGGGAGGCATGGGCGGCTT+GGG 0.312741 7_4:+57985860 Msa1165940:CDS
CCAGCAGCATCTTGCTCTCC+AGG 0.348935 7_4:-57987281 None:intergenic
GGGCGGCTTGGGAGGAATGA+TGG 0.360240 7_4:+57985871 Msa1165940:CDS
CTCATTATGTGAAAATAGAT+TGG 0.366482 7_4:+57985289 Msa1165940:CDS
ACTAACCAAAGAAGGAATTA+GGG 0.393297 7_4:+57984229 Msa1165940:five_prime_UTR
GGCGGCTTGGGAGGAATGAT+GGG 0.395763 7_4:+57985872 Msa1165940:CDS
GAGATTGTACCTCATGTTGT+TGG 0.400473 7_4:-57984293 None:intergenic
TGTGTACTGCAGAAATTTGC+TGG 0.400858 7_4:+57986029 Msa1165940:intron
GAAAATAGATTGGGATAAAT+GGG 0.403064 7_4:+57985299 Msa1165940:CDS
GGAGGCATGGGCGGCTTGGG+AGG 0.412828 7_4:+57985863 Msa1165940:CDS
GATGCTGCTGGCAAGAGCGC+TGG 0.414372 7_4:+57987293 Msa1165940:CDS
AATGGGAGGCATGGGCGGCT+TGG 0.421152 7_4:+57985859 Msa1165940:CDS
GGAGGAATGGGAGGCATGGG+CGG 0.422053 7_4:+57985854 Msa1165940:CDS
TGCAAGGTTATTATGTGCTC+GGG 0.426606 7_4:-57987349 None:intergenic
AGATTTATTTAATGCATGAA+TGG 0.431115 7_4:+57987509 Msa1165940:three_prime_UTR
CTGCAAGGTTATTATGTGCT+CGG 0.431755 7_4:-57987350 None:intergenic
AATGGGAGGCATGGGAGGAA+TGG 0.435114 7_4:+57985907 Msa1165940:CDS
GCGGCTTGGGAGGAATGATG+GGG 0.439489 7_4:+57985873 Msa1165940:CDS
GGAGGAATGGGAGGCATGGG+AGG 0.441962 7_4:+57985902 Msa1165940:CDS
CTGCAGAAATTCGGCGGGAT+GGG 0.442879 7_4:+57985815 Msa1165940:intron
GATGATCCAATGGGAGGAAT+GGG 0.449196 7_4:+57985842 Msa1165940:CDS
CGGCTTGGGAGGAATGATGG+GGG 0.450615 7_4:+57985874 Msa1165940:CDS
TTTCTGTCACTAACCAAAGA+AGG 0.451360 7_4:+57984221 Msa1165940:five_prime_UTR
ATGCCTCCCATTCCTCCCAT+TGG 0.456440 7_4:-57985848 None:intergenic
ATGGGAGGAATGGGAGGCAT+GGG 0.458260 7_4:+57985899 Msa1165940:CDS
CATGGGAGGAATGGGAGGCA+TGG 0.459907 7_4:+57985898 Msa1165940:CDS
CTAAACTCATCGCATTGAAC+GGG 0.460491 7_4:+57987722 Msa1165940:three_prime_UTR
ATGGGAGGAATGGGAGGCAT+GGG 0.470038 7_4:+57985851 Msa1165940:CDS
GTCGTCATCCCGAGGTTAAG+TGG 0.476828 7_4:+57984817 Msa1165940:intron
AATGGAAGGACTGGGAGGAA+TGG 0.482020 7_4:+57985925 Msa1165940:CDS
TGTGTACTACTGCAGAAATT+CGG 0.482929 7_4:+57985806 Msa1165940:intron
CATGGGAGGAATGGAAGGAC+TGG 0.485477 7_4:+57985916 Msa1165940:CDS
TCATTATGTGAAAATAGATT+GGG 0.486084 7_4:+57985290 Msa1165940:CDS
CTCTGTGCCCACTTAACCTC+GGG 0.490812 7_4:-57984825 None:intergenic
CCTGGAGAGCAAGATGCTGC+TGG 0.496634 7_4:+57987281 Msa1165940:CDS
CTGAGAGTGGATGGTGGAAG+AGG 0.498153 7_4:+57985241 Msa1165940:CDS
AATGGGAGGAATGGGAGGCA+TGG 0.503653 7_4:+57985850 Msa1165940:CDS
TTCCTCTTTGTGCCATTCAG+TGG 0.505023 7_4:+57987415 Msa1165940:three_prime_UTR
GATCAAGAAGTGTCAAAGCC+TGG 0.508961 7_4:+57987263 Msa1165940:intron
TGATGATCCAATGGGAGGAA+TGG 0.517095 7_4:+57985841 Msa1165940:CDS
GGAGGCATGGGAGGAATGGA+AGG 0.525417 7_4:+57985911 Msa1165940:CDS
AAGAGGTTGCTGCGTGGAGA+AGG 0.527175 7_4:+57985258 Msa1165940:CDS
ACTGCAGAAATTCGGCGGGA+TGG 0.533257 7_4:+57985814 Msa1165940:intron
GGCTTGGGAGGAATGATGGG+GGG 0.535535 7_4:+57985875 Msa1165940:CDS
TGGGATGGGTGGTGATGCAA+TGG 0.535642 7_4:+57986049 Msa1165940:CDS
TGCTGGCAAGAGCGCTGGTG+AGG 0.538363 7_4:+57987298 Msa1165940:CDS
CATATTCTGTGTAGTGCAGA+AGG 0.542490 7_4:+57985218 Msa1165940:CDS
ACTAAACTCATCGCATTGAA+CGG 0.543164 7_4:+57987721 Msa1165940:three_prime_UTR
ACTGCAGAAATTTGCTGGGA+TGG 0.543444 7_4:+57986034 Msa1165940:intron
GGTCTACATCACAGTGCAGT+TGG 0.544236 7_4:+57984857 Msa1165940:CDS
CTTAAAACTACACCACTGAA+TGG 0.547014 7_4:-57987427 None:intergenic
GATGGGTGGTGATGATCCAA+TGG 0.551280 7_4:+57985832 Msa1165940:CDS
CAGAAATTCGGCGGGATGGG+TGG 0.555897 7_4:+57985818 Msa1165940:intron
TACTACTGCAGAAATTCGGC+GGG 0.556423 7_4:+57985810 Msa1165940:intron
TGCTGTGTTGACTTAACAGT+AGG 0.559983 7_4:+57987472 Msa1165940:three_prime_UTR
GATGAAGATGAGGCTGAAGA+AGG 0.560115 7_4:+57985324 Msa1165940:CDS
CTGCAGAAATTTGCTGGGAT+GGG 0.566994 7_4:+57986035 Msa1165940:intron
GTTGCTGCGTGGAGAAGGCA+AGG 0.570508 7_4:+57985263 Msa1165940:CDS
TCTAGCCAGCGCTGTCTCGA+TGG 0.574127 7_4:+57987544 Msa1165940:three_prime_UTR
TCTTCAAATCTTGCACTGCA+AGG 0.577046 7_4:-57987365 None:intergenic
GTCTCGATGGAAAAGAATGT+TGG 0.578060 7_4:+57987557 Msa1165940:three_prime_UTR
CTTTGACAAGGTTAATGTAG+AGG 0.578313 7_4:+57984982 Msa1165940:CDS
ACTACTGTGATTAAACCTTG+TGG 0.578622 7_4:-57987645 None:intergenic
CAGGAGAGCAAAATCAGTGT+AGG 0.585626 7_4:+57985186 Msa1165940:intron
ATGGGAGGAATGGAAGGACT+GGG 0.592383 7_4:+57985917 Msa1165940:CDS
TGCAGAAGGCTGAGAGTGGA+TGG 0.594343 7_4:+57985232 Msa1165940:CDS
TCTCTGTGCCCACTTAACCT+CGG 0.594623 7_4:-57984826 None:intergenic
GATCCAATGGGAGGAATGGG+AGG 0.596994 7_4:+57985845 Msa1165940:CDS
CAGAAATTTGCTGGGATGGG+TGG 0.597276 7_4:+57986038 Msa1165940:intron
TTTATTTAATGCATGAATGG+CGG 0.605112 7_4:+57987512 Msa1165940:three_prime_UTR
TCGTCATCCCGAGGTTAAGT+GGG 0.605727 7_4:+57984818 Msa1165940:CDS
ATTGACGAGAGTGACGATGA+AGG 0.607086 7_4:+57986077 Msa1165940:CDS
ATGGGTGGTGATGATCCAAT+GGG 0.611795 7_4:+57985833 Msa1165940:CDS
GTGTACTGCAGAAATTTGCT+GGG 0.618065 7_4:+57986030 Msa1165940:intron
CAATCAAATCCAACAACATG+AGG 0.619501 7_4:+57984284 Msa1165940:exon
GTGGGCACAGAGAGTAGACA+AGG 0.620515 7_4:+57984836 Msa1165940:CDS
GTTAAGTCAACACAGCAAAG+AGG 0.628057 7_4:-57987466 None:intergenic
GAAACTTGAGCTCTTTGACA+AGG 0.629398 7_4:+57984970 Msa1165940:CDS
GGAGGAATGGAAGGACTGGG+AGG 0.646274 7_4:+57985920 Msa1165940:CDS
ATGATGCAGTCGTCATCCCG+AGG 0.646727 7_4:+57984809 Msa1165940:intron
CACCACTGAATGGCACAAAG+AGG 0.647026 7_4:-57987417 None:intergenic
TAAATGGGTCGATGAAGATG+AGG 0.649358 7_4:+57985314 Msa1165940:CDS
GTACTACTGCAGAAATTCGG+CGG 0.650088 7_4:+57985809 Msa1165940:intron
GTAGTGCAGAAGGCTGAGAG+TGG 0.686588 7_4:+57985228 Msa1165940:CDS
GGTGGTGATGATCCAATGGG+AGG 0.688264 7_4:+57985836 Msa1165940:CDS
ATATTGTGACAATTTCCACA+AGG 0.689071 7_4:+57987630 Msa1165940:three_prime_UTR
GCAAGGTTATTATGTGCTCG+GGG 0.703220 7_4:-57987348 None:intergenic
ACACAGCAAAGAGGACACAA+AGG 0.705271 7_4:-57987457 None:intergenic
AGAAGGCTGAGAGTGGATGG+TGG 0.722955 7_4:+57985235 Msa1165940:CDS
TGGTGGAAGAGGTTGCTGCG+TGG 0.748724 7_4:+57985252 Msa1165940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTGATATTAATTTTT+AGG + chr7_4:57985520-57985539 Msa1165940:intron 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr7_4:57986537-57986556 Msa1165940:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr7_4:57986538-57986557 Msa1165940:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG - chr7_4:57986586-57986605 None:intergenic 10.0%
!! TATCCATTAAAAAAATTCAA+AGG - chr7_4:57985364-57985383 None:intergenic 15.0%
!!! TTTGAATTTTTTTAATGGAT+AGG + chr7_4:57985363-57985382 Msa1165940:intron 15.0%
!! TCTAAATTAATAAATTTCTC+CGG - chr7_4:57986253-57986272 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr7_4:57986614-57986633 Msa1165940:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr7_4:57986652-57986671 None:intergenic 15.0%
!! AGATTATTAATTTCAATTTG+AGG + chr7_4:57986990-57987009 Msa1165940:intron 15.0%
!! GATTATTAATTTCAATTTGA+GGG + chr7_4:57986991-57987010 Msa1165940:intron 15.0%
!! AAACTATGAAACAAAATGTT+AGG + chr7_4:57984556-57984575 Msa1165940:intron 20.0%
!! AACTATGAAACAAAATGTTA+GGG + chr7_4:57984557-57984576 Msa1165940:intron 20.0%
!!! TTATTAGAGCTGTTTTAAAA+TGG + chr7_4:57984739-57984758 Msa1165940:intron 20.0%
!!! GTTTTGATTTATATGCTTAT+CGG + chr7_4:57984770-57984789 Msa1165940:intron 20.0%
!! TCATTATGTGAAAATAGATT+GGG + chr7_4:57985290-57985309 Msa1165940:CDS 20.0%
!!! TGTCCTTTGAATTTTTTTAA+TGG + chr7_4:57985358-57985377 Msa1165940:intron 20.0%
!!! GGACAACAATATATTTTTAT+TGG + chr7_4:57985384-57985403 Msa1165940:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG + chr7_4:57986226-57986245 Msa1165940:intron 20.0%
!! AAACTCTTTGAATTAATACT+CGG - chr7_4:57986690-57986709 None:intergenic 20.0%
!! TAAGAAAAAGGAAATTAAAG+GGG - chr7_4:57987100-57987119 None:intergenic 20.0%
!! CTAAGAAAAAGGAAATTAAA+GGG - chr7_4:57987101-57987120 None:intergenic 20.0%
!! ACTAAGAAAAAGGAAATTAA+AGG - chr7_4:57987102-57987121 None:intergenic 20.0%
!! AGATTTATTTAATGCATGAA+TGG + chr7_4:57987509-57987528 Msa1165940:three_prime_UTR 20.0%
!! CAAAATACTTGAATCATTAA+AGG + chr7_4:57987668-57987687 Msa1165940:three_prime_UTR 20.0%
!! ACTTGTCTTTTCAATTGATT+TGG + chr7_4:57984442-57984461 Msa1165940:intron 25.0%
! ACTATGAAACAAAATGTTAG+GGG + chr7_4:57984558-57984577 Msa1165940:intron 25.0%
! ATAATTAAATCATGCCTCTA+TGG + chr7_4:57984594-57984613 Msa1165940:intron 25.0%
! CTTTCTTGTATATGACTATT+TGG + chr7_4:57984685-57984704 Msa1165940:intron 25.0%
!!! TAAGATCAACTTTGGAATTT+TGG - chr7_4:57984889-57984908 None:intergenic 25.0%
!! CAATCTATTTTCACATAATG+AGG - chr7_4:57985291-57985310 None:intergenic 25.0%
! CTCATTATGTGAAAATAGAT+TGG + chr7_4:57985289-57985308 Msa1165940:CDS 25.0%
! TGAAAATAGATTGGGATAAA+TGG + chr7_4:57985298-57985317 Msa1165940:CDS 25.0%
! GAAAATAGATTGGGATAAAT+GGG + chr7_4:57985299-57985318 Msa1165940:CDS 25.0%
! ATCAACAAAATGATACAACT+GGG - chr7_4:57985510-57985529 None:intergenic 25.0%
! TATCAACAAAATGATACAAC+TGG - chr7_4:57985511-57985530 None:intergenic 25.0%
! AGAAATATTGTAGTGAGAAA+TGG - chr7_4:57985666-57985685 None:intergenic 25.0%
!!! CATGATACTTAGATTTTTTG+TGG + chr7_4:57986177-57986196 Msa1165940:intron 25.0%
! TAAATTAATAATGTCAGGAC+CGG + chr7_4:57986231-57986250 Msa1165940:intron 25.0%
! ACTGTACATACTAAACAAAA+AGG + chr7_4:57986333-57986352 Msa1165940:intron 25.0%
!!! GACAATGTAGCTTTAAATAT+TGG + chr7_4:57986772-57986791 Msa1165940:intron 25.0%
! AAGAAAAAGGAAATTAAAGG+GGG - chr7_4:57987099-57987118 None:intergenic 25.0%
! ACACTTCTTGATCTATAATT+GGG - chr7_4:57987256-57987275 None:intergenic 25.0%
! TTTATTTAATGCATGAATGG+CGG + chr7_4:57987512-57987531 Msa1165940:three_prime_UTR 25.0%
! TGGAAATTGTCACAATATTT+AGG - chr7_4:57987628-57987647 None:intergenic 25.0%
ACTAACCAAAGAAGGAATTA+GGG + chr7_4:57984229-57984248 Msa1165940:five_prime_UTR 30.0%
TAAAACCCTAATTCCTTCTT+TGG - chr7_4:57984237-57984256 None:intergenic 30.0%
! AAGAAGGAATTAGGGTTTTA+CGG + chr7_4:57984237-57984256 Msa1165940:five_prime_UTR 30.0%
GATTGAAGATGAGAAAAAAG+AGG - chr7_4:57984269-57984288 None:intergenic 30.0%
AACAAGTCGTCAAATTCAAA+GGG - chr7_4:57984491-57984510 None:intergenic 30.0%
AAACAAGTCGTCAAATTCAA+AGG - chr7_4:57984492-57984511 None:intergenic 30.0%
!!! CTGTTTTAAAATGGATGTGT+TGG + chr7_4:57984748-57984767 Msa1165940:intron 30.0%
CTATGTCCTAAAATGAAAGA+TGG + chr7_4:57985010-57985029 Msa1165940:intron 30.0%
! TAAGGACCATCTTTCATTTT+AGG - chr7_4:57985019-57985038 None:intergenic 30.0%
CATTCAGGTAAACATTCATA+AGG - chr7_4:57985037-57985056 None:intergenic 30.0%
! TTACCTGAATGAGTTGAATA+AGG + chr7_4:57985046-57985065 Msa1165940:intron 30.0%
!!! AAGCATTTTTAGAATGGTTG+TGG + chr7_4:57985107-57985126 Msa1165940:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + chr7_4:57985583-57985602 Msa1165940:intron 30.0%
!! CTATTTCTAACCTCTTCAAT+TGG + chr7_4:57985684-57985703 Msa1165940:intron 30.0%
CAACGTAAAACATCAATAGA+AGG - chr7_4:57985779-57985798 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG + chr7_4:57986464-57986483 Msa1165940:intron 30.0%
! ATATGCTTTTATGTAGAAGC+AGG + chr7_4:57986718-57986737 Msa1165940:intron 30.0%
TAAAGTTCGTTGTTAACATG+AGG + chr7_4:57986801-57986820 Msa1165940:intron 30.0%
AAAGTTCGTTGTTAACATGA+GGG + chr7_4:57986802-57986821 Msa1165940:intron 30.0%
ATGTCAAGCAACTAAGAAAA+AGG - chr7_4:57987112-57987131 None:intergenic 30.0%
! TTTTTCTTAGTTGCTTGACA+TGG + chr7_4:57987111-57987130 Msa1165940:intron 30.0%
! TGAGCATCTAGTTCAAAAAA+GGG - chr7_4:57987172-57987191 None:intergenic 30.0%
! ATGAGCATCTAGTTCAAAAA+AGG - chr7_4:57987173-57987192 None:intergenic 30.0%
TGATCTATAATTGGGAAACA+CGG - chr7_4:57987248-57987267 None:intergenic 30.0%
GACACTTCTTGATCTATAAT+TGG - chr7_4:57987257-57987276 None:intergenic 30.0%
ATATTGTGACAATTTCCACA+AGG + chr7_4:57987630-57987649 Msa1165940:three_prime_UTR 30.0%
TTTCTGTCACTAACCAAAGA+AGG + chr7_4:57984221-57984240 Msa1165940:five_prime_UTR 35.0%
CACTAACCAAAGAAGGAATT+AGG + chr7_4:57984228-57984247 Msa1165940:five_prime_UTR 35.0%
GAAGATGAGAAAAAAGAGGT+AGG - chr7_4:57984265-57984284 None:intergenic 35.0%
CAATCAAATCCAACAACATG+AGG + chr7_4:57984284-57984303 Msa1165940:exon 35.0%
CTTATGTGATGAAATCGGAA+GGG - chr7_4:57984376-57984395 None:intergenic 35.0%
CCAAGCTTATGTGATGAAAT+CGG - chr7_4:57984381-57984400 None:intergenic 35.0%
TCAAAGGGTGAGTAACAAAT+CGG - chr7_4:57984476-57984495 None:intergenic 35.0%
!! ACAAAATGTTAGGGGTATCT+TGG + chr7_4:57984566-57984585 Msa1165940:intron 35.0%
ATCTGCATCAATTACCATAG+AGG - chr7_4:57984611-57984630 None:intergenic 35.0%
GTAATTGATGCAGATTGTGA+TGG + chr7_4:57984616-57984635 Msa1165940:intron 35.0%
!! TTCTGGAGTAAGATCAACTT+TGG - chr7_4:57984897-57984916 None:intergenic 35.0%
! AAAGTTGATCTTACTCCAGA+AGG + chr7_4:57984896-57984915 Msa1165940:intron 35.0%
GAAAAGGTAAAATCACCTTC+TGG - chr7_4:57984914-57984933 None:intergenic 35.0%
! GAAGGTGATTTTACCTTTTC+TGG + chr7_4:57984914-57984933 Msa1165940:intron 35.0%
CTTTGACAAGGTTAATGTAG+AGG + chr7_4:57984982-57985001 Msa1165940:CDS 35.0%
AGTCCTTATTCAACTCATTC+AGG - chr7_4:57985052-57985071 None:intergenic 35.0%
ATGCTTTGCTTGCAAAGATA+TGG + chr7_4:57985132-57985151 Msa1165940:intron 35.0%
GAAATCTGATCGAATTGTCT+CGG + chr7_4:57985406-57985425 Msa1165940:intron 35.0%
TTCCTTAACAAGTGCCTTAA+GGG - chr7_4:57985571-57985590 None:intergenic 35.0%
TTTCCTTAACAAGTGCCTTA+AGG - chr7_4:57985572-57985591 None:intergenic 35.0%
TTTCTAACCTCTTCAATTGG+TGG + chr7_4:57985687-57985706 Msa1165940:intron 35.0%
TTCTAACCTCTTCAATTGGT+GGG + chr7_4:57985688-57985707 Msa1165940:intron 35.0%
GTAAAATTCCATCTGTCCAA+TGG - chr7_4:57985726-57985745 None:intergenic 35.0%
TGTGTACTACTGCAGAAATT+CGG + chr7_4:57985806-57985825 Msa1165940:intron 35.0%
CTGTTTATGCACATGATACT+TGG + chr7_4:57986139-57986158 Msa1165940:intron 35.0%
CTAATTTACGTTAAGTCCCA+AGG - chr7_4:57986398-57986417 None:intergenic 35.0%
ACTACTGTGTTCATATGCAT+TGG + chr7_4:57986420-57986439 Msa1165940:intron 35.0%
TTGGGACCGAAAATTGTAAA+GGG + chr7_4:57986556-57986575 Msa1165940:intron 35.0%
! GGAGATCCCTTTACAATTTT+CGG - chr7_4:57986565-57986584 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG + chr7_4:57986624-57986643 Msa1165940:intron 35.0%
! GAGCATCTAGTTCAAAAAAG+GGG - chr7_4:57987171-57987190 None:intergenic 35.0%
GATCTATAATTGGGAAACAC+GGG - chr7_4:57987247-57987266 None:intergenic 35.0%
CTTAAAACTACACCACTGAA+TGG - chr7_4:57987430-57987449 None:intergenic 35.0%
!!! TTCAGTGGTGTAGTTTTAAG+TGG + chr7_4:57987430-57987449 Msa1165940:three_prime_UTR 35.0%
!!! TCAGTGGTGTAGTTTTAAGT+GGG + chr7_4:57987431-57987450 Msa1165940:three_prime_UTR 35.0%
ACTACTGTGATTAAACCTTG+TGG - chr7_4:57987648-57987667 None:intergenic 35.0%
ACTAAACTCATCGCATTGAA+CGG + chr7_4:57987721-57987740 Msa1165940:three_prime_UTR 35.0%
GAGATTGTACCTCATGTTGT+TGG - chr7_4:57984296-57984315 None:intergenic 40.0%
GCTTATGTGATGAAATCGGA+AGG - chr7_4:57984377-57984396 None:intergenic 40.0%
CCGATTTCATCACATAAGCT+TGG + chr7_4:57984378-57984397 Msa1165940:intron 40.0%
GCAGATTGTGATGGCAAATT+TGG + chr7_4:57984625-57984644 Msa1165940:intron 40.0%
!! TTTACCTTTTCTGGTAGTGC+TGG + chr7_4:57984923-57984942 Msa1165940:intron 40.0%
GAAACTTGAGCTCTTTGACA+AGG + chr7_4:57984970-57984989 Msa1165940:CDS 40.0%
!! GGTCGCAAGCATTTTTAGAA+TGG + chr7_4:57985101-57985120 Msa1165940:intron 40.0%
CTGCAATCAAAGAGTCATGA+AGG - chr7_4:57985169-57985188 None:intergenic 40.0%
CTTCATGACTCTTTGATTGC+AGG + chr7_4:57985167-57985186 Msa1165940:intron 40.0%
CATATTCTGTGTAGTGCAGA+AGG + chr7_4:57985218-57985237 Msa1165940:CDS 40.0%
TAAATGGGTCGATGAAGATG+AGG + chr7_4:57985314-57985333 Msa1165940:CDS 40.0%
! CGAATTGTCTCGGTTTTTGT+TGG + chr7_4:57985416-57985435 Msa1165940:intron 40.0%
! CAATGCAAGCCTACTACTTT+TGG - chr7_4:57985595-57985614 None:intergenic 40.0%
CAAAAGTAGTAGGCTTGCAT+TGG + chr7_4:57985593-57985612 Msa1165940:intron 40.0%
TCTAACCTCTTCAATTGGTG+GGG + chr7_4:57985689-57985708 Msa1165940:intron 40.0%
GATATGATCCATTGGACAGA+TGG + chr7_4:57985715-57985734 Msa1165940:intron 40.0%
TGTGTACTGCAGAAATTTGC+TGG + chr7_4:57986029-57986048 Msa1165940:intron 40.0%
! GTGTACTGCAGAAATTTGCT+GGG + chr7_4:57986030-57986049 Msa1165940:intron 40.0%
CTTGGGACCGAAAATTGTAA+AGG + chr7_4:57986555-57986574 Msa1165940:intron 40.0%
! TTTTTACATTGGCCCAAGTC+GGG + chr7_4:57986625-57986644 Msa1165940:intron 40.0%
CGTTGTTAACATGAGGGTTA+AGG + chr7_4:57986808-57986827 Msa1165940:intron 40.0%
!! TCAATTTGAGGGCATTCACT+TGG + chr7_4:57987002-57987021 Msa1165940:intron 40.0%
!! CAATTTGAGGGCATTCACTT+GGG + chr7_4:57987003-57987022 Msa1165940:intron 40.0%
GAAAGGGGGTTAAAGAAAAG+AGG + chr7_4:57987025-57987044 Msa1165940:intron 40.0%
TAGTTGCTTGACATGGCTAT+TGG + chr7_4:57987118-57987137 Msa1165940:intron 40.0%
AGTTGCTTGACATGGCTATT+GGG + chr7_4:57987119-57987138 Msa1165940:intron 40.0%
TGCAAGGTTATTATGTGCTC+GGG - chr7_4:57987352-57987371 None:intergenic 40.0%
CTGCAAGGTTATTATGTGCT+CGG - chr7_4:57987353-57987372 None:intergenic 40.0%
TCTTCAAATCTTGCACTGCA+AGG - chr7_4:57987368-57987387 None:intergenic 40.0%
GTTAAGTCAACACAGCAAAG+AGG - chr7_4:57987469-57987488 None:intergenic 40.0%
!! TGCTGTGTTGACTTAACAGT+AGG + chr7_4:57987472-57987491 Msa1165940:three_prime_UTR 40.0%
GTCTCGATGGAAAAGAATGT+TGG + chr7_4:57987557-57987576 Msa1165940:three_prime_UTR 40.0%
CTAAACTCATCGCATTGAAC+GGG + chr7_4:57987722-57987741 Msa1165940:three_prime_UTR 40.0%
! TGATACTAGCCTGCTTATGC+TGG + chr7_4:57985077-57985096 Msa1165940:intron 45.0%
CAGGAGAGCAAAATCAGTGT+AGG + chr7_4:57985186-57985205 Msa1165940:intron 45.0%
GATGAAGATGAGGCTGAAGA+AGG + chr7_4:57985324-57985343 Msa1165940:CDS 45.0%
! TGTCTCGGTTTTTGTTGGTC+AGG + chr7_4:57985421-57985440 Msa1165940:intron 45.0%
!! TGATGTTGACTTGGGAGGAA+TGG + chr7_4:57985450-57985469 Msa1165940:intron 45.0%
! CTTGGGAGGAATGGATTTCT+CGG + chr7_4:57985459-57985478 Msa1165940:intron 45.0%
AAATGCCACAAGTGCCCTTA+AGG + chr7_4:57985554-57985573 Msa1165940:intron 45.0%
! TGCCCTTAAGGCACTTGTTA+AGG + chr7_4:57985566-57985585 Msa1165940:intron 45.0%
TGGGGTGTGATATGATCCAT+TGG + chr7_4:57985707-57985726 Msa1165940:intron 45.0%
GTACTACTGCAGAAATTCGG+CGG + chr7_4:57985809-57985828 Msa1165940:intron 45.0%
TACTACTGCAGAAATTCGGC+GGG + chr7_4:57985810-57985829 Msa1165940:intron 45.0%
! ATGGGTGGTGATGATCCAAT+GGG + chr7_4:57985833-57985852 Msa1165940:CDS 45.0%
TGATGATCCAATGGGAGGAA+TGG + chr7_4:57985841-57985860 Msa1165940:CDS 45.0%
GATGATCCAATGGGAGGAAT+GGG + chr7_4:57985842-57985861 Msa1165940:CDS 45.0%
!! ACTGCAGAAATTTGCTGGGA+TGG + chr7_4:57986034-57986053 Msa1165940:intron 45.0%
!! CTGCAGAAATTTGCTGGGAT+GGG + chr7_4:57986035-57986054 Msa1165940:intron 45.0%
ATTGACGAGAGTGACGATGA+AGG + chr7_4:57986077-57986096 Msa1165940:CDS 45.0%
CGCTGCAACGTAATTCTAAG+AGG - chr7_4:57986373-57986392 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG + chr7_4:57986378-57986397 Msa1165940:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG + chr7_4:57986379-57986398 Msa1165940:intron 45.0%
! AAGGATGTTAGCTCGAGTTG+CGG + chr7_4:57986827-57986846 Msa1165940:intron 45.0%
!! GATCAAGAAGTGTCAAAGCC+TGG + chr7_4:57987263-57987282 Msa1165940:intron 45.0%
GCAAGGTTATTATGTGCTCG+GGG - chr7_4:57987351-57987370 None:intergenic 45.0%
! TTCCTCTTTGTGCCATTCAG+TGG + chr7_4:57987415-57987434 Msa1165940:three_prime_UTR 45.0%
ACACAGCAAAGAGGACACAA+AGG - chr7_4:57987460-57987479 None:intergenic 45.0%
!!! ATAATAAGATAATAATTTTT+CGG - chr7_4:57986587-57986606 None:intergenic 5.0%
TCGTCATCCCGAGGTTAAGT+GGG + chr7_4:57984818-57984837 Msa1165940:CDS 50.0%
TCTCTGTGCCCACTTAACCT+CGG - chr7_4:57984829-57984848 None:intergenic 50.0%
GGTCTACATCACAGTGCAGT+TGG + chr7_4:57984857-57984876 Msa1165940:CDS 50.0%
AGCACCAGCACTACCAGAAA+AGG - chr7_4:57984930-57984949 None:intergenic 50.0%
!!! TTTTCTGGTAGTGCTGGTGC+TGG + chr7_4:57984929-57984948 Msa1165940:intron 50.0%
! TACTAGCCTGCTTATGCTGG+TGG + chr7_4:57985080-57985099 Msa1165940:intron 50.0%
! CTCGGTTTTTGTTGGTCAGG+TGG + chr7_4:57985424-57985443 Msa1165940:intron 50.0%
! GGTTTTTGTTGGTCAGGTGG+TGG + chr7_4:57985427-57985446 Msa1165940:intron 50.0%
! AGGTGGTGGTGATGTTGACT+TGG + chr7_4:57985441-57985460 Msa1165940:intron 50.0%
!! GGTGGTGGTGATGTTGACTT+GGG + chr7_4:57985442-57985461 Msa1165940:intron 50.0%
!! AAGTGCCTTAAGGGCACTTG+TGG - chr7_4:57985562-57985581 None:intergenic 50.0%
TCACACCCCACCAATTGAAG+AGG - chr7_4:57985697-57985716 None:intergenic 50.0%
! GATGGGTGGTGATGATCCAA+TGG + chr7_4:57985832-57985851 Msa1165940:CDS 50.0%
ATGGGAGGAATGGAAGGACT+GGG + chr7_4:57985917-57985936 Msa1165940:CDS 50.0%
AATGGAAGGACTGGGAGGAA+TGG + chr7_4:57985925-57985944 Msa1165940:CDS 50.0%
!! CAGAAATTTGCTGGGATGGG+TGG + chr7_4:57986038-57986057 Msa1165940:intron 50.0%
AATTTGTCCGGTCCCGACTT+GGG - chr7_4:57986640-57986659 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG - chr7_4:57986641-57986660 None:intergenic 50.0%
!! TGAGGGCATTCACTTGGGAA+AGG + chr7_4:57987008-57987027 Msa1165940:intron 50.0%
!! GAGGGCATTCACTTGGGAAA+GGG + chr7_4:57987009-57987028 Msa1165940:intron 50.0%
! AGGGCATTCACTTGGGAAAG+GGG + chr7_4:57987010-57987029 Msa1165940:intron 50.0%
CACCACTGAATGGCACAAAG+AGG - chr7_4:57987420-57987439 None:intergenic 50.0%
ATGATGCAGTCGTCATCCCG+AGG + chr7_4:57984809-57984828 Msa1165940:intron 55.0%
GTCGTCATCCCGAGGTTAAG+TGG + chr7_4:57984817-57984836 Msa1165940:intron 55.0%
CTCTGTGCCCACTTAACCTC+GGG - chr7_4:57984828-57984847 None:intergenic 55.0%
GTGGGCACAGAGAGTAGACA+AGG + chr7_4:57984836-57984855 Msa1165940:CDS 55.0%
TTGCGACCACCAGCATAAGC+AGG - chr7_4:57985089-57985108 None:intergenic 55.0%
GTAGTGCAGAAGGCTGAGAG+TGG + chr7_4:57985228-57985247 Msa1165940:CDS 55.0%
TGCAGAAGGCTGAGAGTGGA+TGG + chr7_4:57985232-57985251 Msa1165940:CDS 55.0%
AGAAGGCTGAGAGTGGATGG+TGG + chr7_4:57985235-57985254 Msa1165940:CDS 55.0%
!! CTGAGAGTGGATGGTGGAAG+AGG + chr7_4:57985241-57985260 Msa1165940:CDS 55.0%
AAGAGGTTGCTGCGTGGAGA+AGG + chr7_4:57985258-57985277 Msa1165940:CDS 55.0%
!! GGTGGTGATGTTGACTTGGG+AGG + chr7_4:57985445-57985464 Msa1165940:intron 55.0%
ACTGCAGAAATTCGGCGGGA+TGG + chr7_4:57985814-57985833 Msa1165940:intron 55.0%
CTGCAGAAATTCGGCGGGAT+GGG + chr7_4:57985815-57985834 Msa1165940:intron 55.0%
! GGTGGTGATGATCCAATGGG+AGG + chr7_4:57985836-57985855 Msa1165940:CDS 55.0%
GATCCAATGGGAGGAATGGG+AGG + chr7_4:57985845-57985864 Msa1165940:CDS 55.0%
ATGCCTCCCATTCCTCCCAT+TGG - chr7_4:57985851-57985870 None:intergenic 55.0%
AATGGGAGGAATGGGAGGCA+TGG + chr7_4:57985850-57985869 Msa1165940:CDS 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG + chr7_4:57985851-57985870 Msa1165940:CDS 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG + chr7_4:57985851-57985870 Msa1165940:CDS 55.0%
! AATGGGAGGCATGGGAGGAA+TGG + chr7_4:57985907-57985926 Msa1165940:CDS 55.0%
CATGGGAGGAATGGAAGGAC+TGG + chr7_4:57985916-57985935 Msa1165940:CDS 55.0%
! TGGGATGGGTGGTGATGCAA+TGG + chr7_4:57986049-57986068 Msa1165940:CDS 55.0%
! GTTAGCTCGAGTTGCGGAAG+TGG + chr7_4:57986833-57986852 Msa1165940:intron 55.0%
GGGCATTCACTTGGGAAAGG+GGG + chr7_4:57987011-57987030 Msa1165940:intron 55.0%
! CTTTTCCATCGAGACAGCGC+TGG - chr7_4:57987552-57987571 None:intergenic 55.0%
TGGTGGAAGAGGTTGCTGCG+TGG + chr7_4:57985252-57985271 Msa1165940:CDS 60.0%
GTTGCTGCGTGGAGAAGGCA+AGG + chr7_4:57985263-57985282 Msa1165940:CDS 60.0%
CAGAAATTCGGCGGGATGGG+TGG + chr7_4:57985818-57985837 Msa1165940:intron 60.0%
! GGCGGCTTGGGAGGAATGAT+GGG + chr7_4:57985872-57985891 Msa1165940:CDS 60.0%
! GCGGCTTGGGAGGAATGATG+GGG + chr7_4:57985873-57985892 Msa1165940:CDS 60.0%
! CGGCTTGGGAGGAATGATGG+GGG + chr7_4:57985874-57985893 Msa1165940:CDS 60.0%
! GGCTTGGGAGGAATGATGGG+GGG + chr7_4:57985875-57985894 Msa1165940:CDS 60.0%
! GGAGGAATGATGGGGGGCAT+GGG + chr7_4:57985881-57985900 Msa1165940:CDS 60.0%
! ATGGGGGGCATGGGAGGAAT+GGG + chr7_4:57985890-57985909 Msa1165940:CDS 60.0%
CATGGGAGGAATGGGAGGCA+TGG + chr7_4:57985898-57985917 Msa1165940:CDS 60.0%
! GGAGGCATGGGAGGAATGGA+AGG + chr7_4:57985911-57985930 Msa1165940:CDS 60.0%
GGAGGAATGGAAGGACTGGG+AGG + chr7_4:57985920-57985939 Msa1165940:CDS 60.0%
ACATTGGCCCAAGTCGGGAC+CGG + chr7_4:57986630-57986649 Msa1165940:intron 60.0%
CCAGCAGCATCTTGCTCTCC+AGG - chr7_4:57987284-57987303 None:intergenic 60.0%
CCTGGAGAGCAAGATGCTGC+TGG + chr7_4:57987281-57987300 Msa1165940:CDS 60.0%
TCTAGCCAGCGCTGTCTCGA+TGG + chr7_4:57987544-57987563 Msa1165940:three_prime_UTR 60.0%
! GGAGGAATGGGAGGCATGGG+CGG + chr7_4:57985854-57985873 Msa1165940:CDS 65.0%
! AATGGGAGGCATGGGCGGCT+TGG + chr7_4:57985859-57985878 Msa1165940:CDS 65.0%
! ATGGGAGGCATGGGCGGCTT+GGG + chr7_4:57985860-57985879 Msa1165940:CDS 65.0%
! GGGCGGCTTGGGAGGAATGA+TGG + chr7_4:57985871-57985890 Msa1165940:CDS 65.0%
! GGGAGGAATGATGGGGGGCA+TGG + chr7_4:57985880-57985899 Msa1165940:CDS 65.0%
! GGAATGATGGGGGGCATGGG+AGG + chr7_4:57985884-57985903 Msa1165940:CDS 65.0%
! GATGGGGGGCATGGGAGGAA+TGG + chr7_4:57985889-57985908 Msa1165940:CDS 65.0%
! GGAGGAATGGGAGGCATGGG+AGG + chr7_4:57985854-57985873 Msa1165940:CDS 65.0%
! GATGCTGCTGGCAAGAGCGC+TGG + chr7_4:57987293-57987312 Msa1165940:CDS 65.0%
!! TGCTGGCAAGAGCGCTGGTG+AGG + chr7_4:57987298-57987317 Msa1165940:CDS 65.0%
! GGGGGCATGGGAGGAATGGG+AGG + chr7_4:57985893-57985912 Msa1165940:CDS 70.0%
! GGAGGCATGGGCGGCTTGGG+AGG + chr7_4:57985863-57985882 Msa1165940:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57984215 57987761 57984215 ID=Msa1165940;Name=Msa1165940
chr7_4 mRNA 57984215 57987761 57984215 ID=Msa1165940-mRNA-1;Parent=Msa1165940;Name=Msa1165940-mRNA-1;_AED=0.19;_eAED=0.19;_QI=86|0.71|0.62|1|0.85|0.75|8|400|202
chr7_4 exon 57984215 57984305 57984215 ID=Msa1165940-mRNA-1:exon:17666;Parent=Msa1165940-mRNA-1
chr7_4 exon 57984818 57984898 57984818 ID=Msa1165940-mRNA-1:exon:17667;Parent=Msa1165940-mRNA-1
chr7_4 exon 57984940 57985003 57984940 ID=Msa1165940-mRNA-1:exon:17668;Parent=Msa1165940-mRNA-1
chr7_4 exon 57985189 57985345 57985189 ID=Msa1165940-mRNA-1:exon:17669;Parent=Msa1165940-mRNA-1
chr7_4 exon 57985443 57985453 57985443 ID=Msa1165940-mRNA-1:exon:17670;Parent=Msa1165940-mRNA-1
chr7_4 exon 57985821 57985955 57985821 ID=Msa1165940-mRNA-1:exon:17671;Parent=Msa1165940-mRNA-1
chr7_4 exon 57986041 57986098 57986041 ID=Msa1165940-mRNA-1:exon:17672;Parent=Msa1165940-mRNA-1
chr7_4 exon 57987264 57987761 57987264 ID=Msa1165940-mRNA-1:exon:17673;Parent=Msa1165940-mRNA-1
chr7_4 five_prime_UTR 57984215 57984300 57984215 ID=Msa1165940-mRNA-1:five_prime_utr;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57984301 57984305 57984301 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57984818 57984898 57984818 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57984940 57985003 57984940 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57985189 57985345 57985189 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57985443 57985453 57985443 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57985821 57985955 57985821 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57986041 57986098 57986041 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 CDS 57987264 57987361 57987264 ID=Msa1165940-mRNA-1:cds;Parent=Msa1165940-mRNA-1
chr7_4 three_prime_UTR 57987362 57987761 57987362 ID=Msa1165940-mRNA-1:three_prime_utr;Parent=Msa1165940-mRNA-1
Gene Sequence

>Msa1165940

ATGAGTCGTCATCCCGAGGTTAAGTGGGCACAGAGAGTAGACAAGGTCTACATCACAGTGCAGTTGGCTGATTCCAAAATTCCAAATGCTGGTGCTGGAGACAATCAGTATGAGCTGAAACTTGAGCTCTTTGACAAGGTTAATGTAGAGGAGAGCAAAATCAGTGTAGGAGTGCGAAACATATTCTGTGTAGTGCAGAAGGCTGAGAGTGGATGGTGGAAGAGGTTGCTGCGTGGAGAAGGCAAGGCTCCTCATTATGTGAAAATAGATTGGGATAAATGGGTCGATGAAGATGAGGCTGAAGAAGGTGGTGGTGATAAATTCGGCGGGATGGGTGGTGATGATCCAATGGGAGGAATGGGAGGCATGGGCGGCTTGGGAGGAATGATGGGGGGCATGGGAGGAATGGGAGGCATGGGAGGAATGGAAGGACTGGGAGGAATGGACTTCTCTAAATTTGCTGGGATGGGTGGTGATGCAATGGATGATATTGACGAGAGTGACGATGAAGATCAAGAAGTGTCAAAGCCTGGAGAGCAAGATGCTGCTGGCAAGAGCGCTGGTGAGGCAGCTACAGAGAGTAAAGTAGAAGCTACCCCGAGCACATAA

Protein sequence

>Msa1165940

MSRHPEVKWAQRVDKVYITVQLADSKIPNAGAGDNQYELKLELFDKVNVEESKISVGVRNIFCVVQKAESGWWKRLLRGEGKAPHYVKIDWDKWVDEDEAEEGGGDKFGGMGGDDPMGGMGGMGGLGGMMGGMGGMGGMGGMEGLGGMDFSKFAGMGGDAMDDIDESDDEDQEVSKPGEQDAAGKSAGEAATESKVEATPST*