AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126830 MtrunA17_Chr7g0269271 99.074 108 1 0 1 108 1 108 3.96e-76 229
Msa1126830 MtrunA17_Chr1g0195701 56.757 222 51 6 1 216 1 183 1.47e-72 218
Msa1126830 MtrunA17_Chr6g0465301 51.724 116 56 0 1 116 1 116 2.83e-38 131
Msa1126830 MtrunA17_Chr6g0460991 48.624 109 55 1 1 109 1 108 3.89e-33 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126830 AT4G02450.2 62.832 113 41 1 1 113 1 112 2.19e-48 159
Msa1126830 AT4G02450.1 62.832 113 41 1 1 113 1 112 2.25e-48 159
Msa1126830 AT3G03773.1 43.836 146 77 3 1 143 1 144 5.42e-35 121
Msa1126830 AT3G03773.3 52.212 113 52 2 1 113 1 111 6.41e-35 120
Msa1126830 AT3G03773.2 46.565 131 65 3 1 128 55 183 2.53e-33 119

Find 99 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATAGATTGGGATAAA+TGG 0.128154 7_3:+78395889 Msa1126830:CDS
TGGAAATTGTCACAATATTT+AGG 0.144003 7_3:-78398216 None:intergenic
CAAAATACTTGAATCATTAA+AGG 0.220029 7_3:+78398259 Msa1126830:three_prime_UTR
CACTAACCAAAGAAGGAATT+AGG 0.235168 7_3:+78394818 Msa1126830:five_prime_UTR
TAAAACCCTAATTCCTTCTT+TGG 0.259582 7_3:-78394824 None:intergenic
ATGGGAGGCATGGGCGGCTT+GGG 0.312741 7_3:+78396451 Msa1126830:CDS
CCAGCAGCATCTTGCTCTCC+AGG 0.348935 7_3:-78397872 None:intergenic
GGGCGGCTTGGGAGGAATGA+TGG 0.360240 7_3:+78396462 Msa1126830:CDS
CTCATTATGTGAAAATAGAT+TGG 0.366482 7_3:+78395880 Msa1126830:CDS
ACTAACCAAAGAAGGAATTA+GGG 0.393297 7_3:+78394819 Msa1126830:five_prime_UTR
GAAAAGGTAAAATCACCTTC+TGG 0.394930 7_3:-78395502 None:intergenic
GGCGGCTTGGGAGGAATGAT+GGG 0.395763 7_3:+78396463 Msa1126830:CDS
GAGATTGTACCTCATGTTGT+TGG 0.400473 7_3:-78394883 None:intergenic
TGTGTACTGCAGAAATTTGC+TGG 0.400858 7_3:+78396620 Msa1126830:intron
GAAAATAGATTGGGATAAAT+GGG 0.403064 7_3:+78395890 Msa1126830:CDS
GGAGGCATGGGCGGCTTGGG+AGG 0.412828 7_3:+78396454 Msa1126830:CDS
TTCTGGAGTAAGATCAACTT+TGG 0.412841 7_3:-78395485 None:intergenic
GATGCTGCTGGCAAGAGCGC+TGG 0.414372 7_3:+78397884 Msa1126830:CDS
AATGGGAGGCATGGGCGGCT+TGG 0.421152 7_3:+78396450 Msa1126830:CDS
GGAGGAATGGGAGGCATGGG+CGG 0.422053 7_3:+78396445 Msa1126830:CDS
TGCAAGGTTATTATGTGCTC+GGG 0.426606 7_3:-78397940 None:intergenic
AGATTTATTTAATGCATGAA+TGG 0.431115 7_3:+78398100 Msa1126830:three_prime_UTR
CTGCAAGGTTATTATGTGCT+CGG 0.431755 7_3:-78397941 None:intergenic
AATGGGAGGCATGGGAGGAA+TGG 0.435114 7_3:+78396498 Msa1126830:CDS
GCGGCTTGGGAGGAATGATG+GGG 0.439489 7_3:+78396464 Msa1126830:CDS
GGAGGAATGGGAGGCATGGG+AGG 0.441962 7_3:+78396493 Msa1126830:CDS
CTGCAGAAATTCGGCGGGAT+GGG 0.442879 7_3:+78396406 Msa1126830:intron
GATGATCCAATGGGAGGAAT+GGG 0.449196 7_3:+78396433 Msa1126830:CDS
CGGCTTGGGAGGAATGATGG+GGG 0.450615 7_3:+78396465 Msa1126830:CDS
TTTCTGTCACTAACCAAAGA+AGG 0.451360 7_3:+78394811 Msa1126830:five_prime_UTR
ATGCCTCCCATTCCTCCCAT+TGG 0.456440 7_3:-78396439 None:intergenic
ATGGGAGGAATGGGAGGCAT+GGG 0.458260 7_3:+78396490 Msa1126830:CDS
CATGGGAGGAATGGGAGGCA+TGG 0.459907 7_3:+78396489 Msa1126830:CDS
CTAAACTCATCGCATTGAAC+GGG 0.460491 7_3:+78398313 Msa1126830:three_prime_UTR
ATGGGAGGAATGGGAGGCAT+GGG 0.470038 7_3:+78396442 Msa1126830:CDS
GTCGTCATCCCGAGGTTAAG+TGG 0.476828 7_3:+78395407 Msa1126830:intron
AATGGAAGGACTGGGAGGAA+TGG 0.482020 7_3:+78396516 Msa1126830:CDS
TGTGTACTACTGCAGAAATT+CGG 0.482929 7_3:+78396397 Msa1126830:intron
CATGGGAGGAATGGAAGGAC+TGG 0.485477 7_3:+78396507 Msa1126830:CDS
TCATTATGTGAAAATAGATT+GGG 0.486084 7_3:+78395881 Msa1126830:CDS
AGCACCAGCACTACCAGAAA+AGG 0.488899 7_3:-78395518 None:intergenic
CTCTGTGCCCACTTAACCTC+GGG 0.490812 7_3:-78395415 None:intergenic
CCTGGAGAGCAAGATGCTGC+TGG 0.496634 7_3:+78397872 Msa1126830:CDS
CTGAGAGTGGATGGTGGAAG+AGG 0.498153 7_3:+78395832 Msa1126830:CDS
AATGGGAGGAATGGGAGGCA+TGG 0.503653 7_3:+78396441 Msa1126830:CDS
TTCCTCTTTGTGCCATTCAG+TGG 0.505023 7_3:+78398006 Msa1126830:three_prime_UTR
GATCAAGAAGTGTCAAAGCC+TGG 0.508961 7_3:+78397854 Msa1126830:intron
TGATGATCCAATGGGAGGAA+TGG 0.517095 7_3:+78396432 Msa1126830:CDS
GGAGGCATGGGAGGAATGGA+AGG 0.525417 7_3:+78396502 Msa1126830:CDS
AAGAGGTTGCTGCGTGGAGA+AGG 0.527175 7_3:+78395849 Msa1126830:CDS
ACTGCAGAAATTCGGCGGGA+TGG 0.533257 7_3:+78396405 Msa1126830:intron
GGCTTGGGAGGAATGATGGG+GGG 0.535535 7_3:+78396466 Msa1126830:CDS
TGGGATGGGTGGTGATGCAA+TGG 0.535642 7_3:+78396640 Msa1126830:CDS
TGCTGGCAAGAGCGCTGGTG+AGG 0.538363 7_3:+78397889 Msa1126830:CDS
CATATTCTGTGTAGTGCAGA+AGG 0.542490 7_3:+78395809 Msa1126830:CDS
ACTAAACTCATCGCATTGAA+CGG 0.543164 7_3:+78398312 Msa1126830:three_prime_UTR
ACTGCAGAAATTTGCTGGGA+TGG 0.543444 7_3:+78396625 Msa1126830:intron
GGTCTACATCACAGTGCAGT+TGG 0.544236 7_3:+78395447 Msa1126830:CDS
CTTAAAACTACACCACTGAA+TGG 0.547014 7_3:-78398018 None:intergenic
AAAGTTGATCTTACTCCAGA+AGG 0.549028 7_3:+78395487 Msa1126830:CDS
GATGGGTGGTGATGATCCAA+TGG 0.551280 7_3:+78396423 Msa1126830:CDS
CAGAAATTCGGCGGGATGGG+TGG 0.555897 7_3:+78396409 Msa1126830:intron
TACTACTGCAGAAATTCGGC+GGG 0.556423 7_3:+78396401 Msa1126830:intron
TGCTGTGTTGACTTAACAGT+AGG 0.559983 7_3:+78398063 Msa1126830:three_prime_UTR
GATGAAGATGAGGCTGAAGA+AGG 0.560115 7_3:+78395915 Msa1126830:CDS
CTGCAGAAATTTGCTGGGAT+GGG 0.566994 7_3:+78396626 Msa1126830:intron
GTTGCTGCGTGGAGAAGGCA+AGG 0.570508 7_3:+78395854 Msa1126830:CDS
TCTAGCCAGCGCTGTCTCGA+TGG 0.574127 7_3:+78398135 Msa1126830:three_prime_UTR
TCTTCAAATCTTGCACTGCA+AGG 0.577046 7_3:-78397956 None:intergenic
GTCTCGATGGAAAAGAATGT+TGG 0.578060 7_3:+78398148 Msa1126830:three_prime_UTR
CTTTGACAAGGTTAATGTAG+AGG 0.578313 7_3:+78395573 Msa1126830:CDS
ACTACTGTGATTAAACCTTG+TGG 0.578622 7_3:-78398236 None:intergenic
CAGGAGAGCAAAATCAGTGT+AGG 0.585626 7_3:+78395777 Msa1126830:intron
ATGGGAGGAATGGAAGGACT+GGG 0.592383 7_3:+78396508 Msa1126830:CDS
TGCAGAAGGCTGAGAGTGGA+TGG 0.594343 7_3:+78395823 Msa1126830:CDS
TCTCTGTGCCCACTTAACCT+CGG 0.594623 7_3:-78395416 None:intergenic
GATCCAATGGGAGGAATGGG+AGG 0.596994 7_3:+78396436 Msa1126830:CDS
CAGAAATTTGCTGGGATGGG+TGG 0.597276 7_3:+78396629 Msa1126830:intron
TTTATTTAATGCATGAATGG+CGG 0.605112 7_3:+78398103 Msa1126830:three_prime_UTR
TCGTCATCCCGAGGTTAAGT+GGG 0.605727 7_3:+78395408 Msa1126830:CDS
ATTGACGAGAGTGACGATGA+AGG 0.607086 7_3:+78396668 Msa1126830:CDS
ATGGGTGGTGATGATCCAAT+GGG 0.611795 7_3:+78396424 Msa1126830:CDS
GTGTACTGCAGAAATTTGCT+GGG 0.618065 7_3:+78396621 Msa1126830:intron
CAATCAAATCCAACAACATG+AGG 0.619501 7_3:+78394874 Msa1126830:exon
GTGGGCACAGAGAGTAGACA+AGG 0.620515 7_3:+78395426 Msa1126830:CDS
GTTAAGTCAACACAGCAAAG+AGG 0.628057 7_3:-78398057 None:intergenic
GAAACTTGAGCTCTTTGACA+AGG 0.629398 7_3:+78395561 Msa1126830:CDS
GGAGGAATGGAAGGACTGGG+AGG 0.646274 7_3:+78396511 Msa1126830:CDS
ATGATGCAGTCGTCATCCCG+AGG 0.646727 7_3:+78395399 Msa1126830:intron
CACCACTGAATGGCACAAAG+AGG 0.647026 7_3:-78398008 None:intergenic
TAAATGGGTCGATGAAGATG+AGG 0.649358 7_3:+78395905 Msa1126830:CDS
GTACTACTGCAGAAATTCGG+CGG 0.650088 7_3:+78396400 Msa1126830:intron
GTAGTGCAGAAGGCTGAGAG+TGG 0.686588 7_3:+78395819 Msa1126830:CDS
GGTGGTGATGATCCAATGGG+AGG 0.688264 7_3:+78396427 Msa1126830:CDS
ATATTGTGACAATTTCCACA+AGG 0.689071 7_3:+78398221 Msa1126830:three_prime_UTR
GCAAGGTTATTATGTGCTCG+GGG 0.703220 7_3:-78397939 None:intergenic
ACACAGCAAAGAGGACACAA+AGG 0.705271 7_3:-78398048 None:intergenic
AGAAGGCTGAGAGTGGATGG+TGG 0.722955 7_3:+78395826 Msa1126830:CDS
TGGTGGAAGAGGTTGCTGCG+TGG 0.748724 7_3:+78395843 Msa1126830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTGATATTAATTTTT+AGG + chr7_3:78396111-78396130 Msa1126830:intron 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr7_3:78397128-78397147 Msa1126830:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr7_3:78397129-78397148 Msa1126830:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG - chr7_3:78397177-78397196 None:intergenic 10.0%
!! TATCCATTAAAAAAATTCAA+AGG - chr7_3:78395955-78395974 None:intergenic 15.0%
!!! TTTGAATTTTTTTAATGGAT+AGG + chr7_3:78395954-78395973 Msa1126830:intron 15.0%
!! TCTAAATTAATAAATTTCTC+CGG - chr7_3:78396844-78396863 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr7_3:78397205-78397224 Msa1126830:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr7_3:78397243-78397262 None:intergenic 15.0%
!! AGATTATTAATTTCAATTTG+AGG + chr7_3:78397581-78397600 Msa1126830:intron 15.0%
!! GATTATTAATTTCAATTTGA+GGG + chr7_3:78397582-78397601 Msa1126830:intron 15.0%
!! AAACTATGAAACAAAATGTT+AGG + chr7_3:78395146-78395165 Msa1126830:intron 20.0%
!! AACTATGAAACAAAATGTTA+GGG + chr7_3:78395147-78395166 Msa1126830:intron 20.0%
!!! TTATTAGAGCTGTTTTAAAA+TGG + chr7_3:78395329-78395348 Msa1126830:intron 20.0%
!!! GTTTTGATTTATATGCTTAT+CGG + chr7_3:78395360-78395379 Msa1126830:intron 20.0%
!! TCATTATGTGAAAATAGATT+GGG + chr7_3:78395881-78395900 Msa1126830:CDS 20.0%
!!! TGTCCTTTGAATTTTTTTAA+TGG + chr7_3:78395949-78395968 Msa1126830:intron 20.0%
!!! GGACAACAATATATTTTTAT+TGG + chr7_3:78395975-78395994 Msa1126830:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG + chr7_3:78396817-78396836 Msa1126830:intron 20.0%
!! AAACTCTTTGAATTAATACT+CGG - chr7_3:78397281-78397300 None:intergenic 20.0%
!! TAAGAAAAAGGAAATTAAAG+GGG - chr7_3:78397691-78397710 None:intergenic 20.0%
!! CTAAGAAAAAGGAAATTAAA+GGG - chr7_3:78397692-78397711 None:intergenic 20.0%
!! ACTAAGAAAAAGGAAATTAA+AGG - chr7_3:78397693-78397712 None:intergenic 20.0%
!! AGATTTATTTAATGCATGAA+TGG + chr7_3:78398100-78398119 Msa1126830:three_prime_UTR 20.0%
!! CAAAATACTTGAATCATTAA+AGG + chr7_3:78398259-78398278 Msa1126830:three_prime_UTR 20.0%
!! ACTTGTCTTTTCAATTGATT+TGG + chr7_3:78395032-78395051 Msa1126830:intron 25.0%
! ACTATGAAACAAAATGTTAG+GGG + chr7_3:78395148-78395167 Msa1126830:intron 25.0%
! ATAATTAAATCATGCCTCTA+TGG + chr7_3:78395184-78395203 Msa1126830:intron 25.0%
! CTTTCTTGTATATGACTATT+TGG + chr7_3:78395275-78395294 Msa1126830:intron 25.0%
!!! AAGATCAACTTTGGAATTTT+TGG - chr7_3:78395479-78395498 None:intergenic 25.0%
!! CAATCTATTTTCACATAATG+AGG - chr7_3:78395882-78395901 None:intergenic 25.0%
! CTCATTATGTGAAAATAGAT+TGG + chr7_3:78395880-78395899 Msa1126830:CDS 25.0%
! TGAAAATAGATTGGGATAAA+TGG + chr7_3:78395889-78395908 Msa1126830:CDS 25.0%
! GAAAATAGATTGGGATAAAT+GGG + chr7_3:78395890-78395909 Msa1126830:CDS 25.0%
! ATCAACAAAATGATACAACT+GGG - chr7_3:78396101-78396120 None:intergenic 25.0%
! TATCAACAAAATGATACAAC+TGG - chr7_3:78396102-78396121 None:intergenic 25.0%
! AGAAATATTGTAGTGAGAAA+TGG - chr7_3:78396257-78396276 None:intergenic 25.0%
!!! CATGATACTTAGATTTTTTG+TGG + chr7_3:78396768-78396787 Msa1126830:intron 25.0%
! TAAATTAATAATGTCAGGAC+CGG + chr7_3:78396822-78396841 Msa1126830:intron 25.0%
! ACTGTACATACTAAACAAAA+AGG + chr7_3:78396924-78396943 Msa1126830:intron 25.0%
!!! GACAATGTAGCTTTAAATAT+TGG + chr7_3:78397363-78397382 Msa1126830:intron 25.0%
! AAGAAAAAGGAAATTAAAGG+GGG - chr7_3:78397690-78397709 None:intergenic 25.0%
! ACACTTCTTGATCTATAATT+GGG - chr7_3:78397847-78397866 None:intergenic 25.0%
! TTTATTTAATGCATGAATGG+CGG + chr7_3:78398103-78398122 Msa1126830:three_prime_UTR 25.0%
! TGGAAATTGTCACAATATTT+AGG - chr7_3:78398219-78398238 None:intergenic 25.0%
ACTAACCAAAGAAGGAATTA+GGG + chr7_3:78394819-78394838 Msa1126830:five_prime_UTR 30.0%
TAAAACCCTAATTCCTTCTT+TGG - chr7_3:78394827-78394846 None:intergenic 30.0%
! AAGAAGGAATTAGGGTTTTA+CGG + chr7_3:78394827-78394846 Msa1126830:five_prime_UTR 30.0%
GATTGAAGATGAGAAAAAAG+AGG - chr7_3:78394859-78394878 None:intergenic 30.0%
AACAAGTCGTCAAATTCAAA+GGG - chr7_3:78395081-78395100 None:intergenic 30.0%
AAACAAGTCGTCAAATTCAA+AGG - chr7_3:78395082-78395101 None:intergenic 30.0%
!!! CTGTTTTAAAATGGATGTGT+TGG + chr7_3:78395338-78395357 Msa1126830:intron 30.0%
CTATGTCCTAAAATGAAAGA+TGG + chr7_3:78395601-78395620 Msa1126830:intron 30.0%
! TAAGGACCATCTTTCATTTT+AGG - chr7_3:78395610-78395629 None:intergenic 30.0%
CATTCAGGTAAACATTCATA+AGG - chr7_3:78395628-78395647 None:intergenic 30.0%
! TTACCTGAATGAGTTGAATA+AGG + chr7_3:78395637-78395656 Msa1126830:intron 30.0%
!!! AAGCATTTTTAGAATGGTTG+TGG + chr7_3:78395698-78395717 Msa1126830:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + chr7_3:78396174-78396193 Msa1126830:intron 30.0%
!! CTATTTCTAACCTCTTCAAT+TGG + chr7_3:78396275-78396294 Msa1126830:intron 30.0%
CAACGTAAAACATCAATAGA+AGG - chr7_3:78396370-78396389 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG + chr7_3:78397055-78397074 Msa1126830:intron 30.0%
! ATATGCTTTTATGTAGAAGC+AGG + chr7_3:78397309-78397328 Msa1126830:intron 30.0%
TAAAGTTCGTTGTTAACATG+AGG + chr7_3:78397392-78397411 Msa1126830:intron 30.0%
AAAGTTCGTTGTTAACATGA+GGG + chr7_3:78397393-78397412 Msa1126830:intron 30.0%
ATGTCAAGCAACTAAGAAAA+AGG - chr7_3:78397703-78397722 None:intergenic 30.0%
! TTTTTCTTAGTTGCTTGACA+TGG + chr7_3:78397702-78397721 Msa1126830:intron 30.0%
! TGAGCATCTAGTTCAAAAAA+GGG - chr7_3:78397763-78397782 None:intergenic 30.0%
! ATGAGCATCTAGTTCAAAAA+AGG - chr7_3:78397764-78397783 None:intergenic 30.0%
TGATCTATAATTGGGAAACA+CGG - chr7_3:78397839-78397858 None:intergenic 30.0%
GACACTTCTTGATCTATAAT+TGG - chr7_3:78397848-78397867 None:intergenic 30.0%
ATATTGTGACAATTTCCACA+AGG + chr7_3:78398221-78398240 Msa1126830:three_prime_UTR 30.0%
TTTCTGTCACTAACCAAAGA+AGG + chr7_3:78394811-78394830 Msa1126830:five_prime_UTR 35.0%
CACTAACCAAAGAAGGAATT+AGG + chr7_3:78394818-78394837 Msa1126830:five_prime_UTR 35.0%
GAAGATGAGAAAAAAGAGGT+AGG - chr7_3:78394855-78394874 None:intergenic 35.0%
CAATCAAATCCAACAACATG+AGG + chr7_3:78394874-78394893 Msa1126830:exon 35.0%
CTTATGTGATGAAATCGGAA+GGG - chr7_3:78394966-78394985 None:intergenic 35.0%
CCAAGCTTATGTGATGAAAT+CGG - chr7_3:78394971-78394990 None:intergenic 35.0%
TCAAAGGGTGAGTAACAAAT+CGG - chr7_3:78395066-78395085 None:intergenic 35.0%
!! ACAAAATGTTAGGGGTATCT+TGG + chr7_3:78395156-78395175 Msa1126830:intron 35.0%
ATCTGCATCAATTACCATAG+AGG - chr7_3:78395201-78395220 None:intergenic 35.0%
GTAATTGATGCAGATTGTGA+TGG + chr7_3:78395206-78395225 Msa1126830:intron 35.0%
!! TTCTGGAGTAAGATCAACTT+TGG - chr7_3:78395488-78395507 None:intergenic 35.0%
! AAAGTTGATCTTACTCCAGA+AGG + chr7_3:78395487-78395506 Msa1126830:CDS 35.0%
GAAAAGGTAAAATCACCTTC+TGG - chr7_3:78395505-78395524 None:intergenic 35.0%
! GAAGGTGATTTTACCTTTTC+TGG + chr7_3:78395505-78395524 Msa1126830:CDS 35.0%
CTTTGACAAGGTTAATGTAG+AGG + chr7_3:78395573-78395592 Msa1126830:CDS 35.0%
AGTCCTTATTCAACTCATTC+AGG - chr7_3:78395643-78395662 None:intergenic 35.0%
ATGCTTTGCTTGCAAAGATA+TGG + chr7_3:78395723-78395742 Msa1126830:intron 35.0%
GAAATCTGATCGAATTGTCT+CGG + chr7_3:78395997-78396016 Msa1126830:intron 35.0%
TTCCTTAACAAGTGCCTTAA+GGG - chr7_3:78396162-78396181 None:intergenic 35.0%
TTTCCTTAACAAGTGCCTTA+AGG - chr7_3:78396163-78396182 None:intergenic 35.0%
TTTCTAACCTCTTCAATTGG+TGG + chr7_3:78396278-78396297 Msa1126830:intron 35.0%
TTCTAACCTCTTCAATTGGT+GGG + chr7_3:78396279-78396298 Msa1126830:intron 35.0%
GTAAAATTCCATCTGTCCAA+TGG - chr7_3:78396317-78396336 None:intergenic 35.0%
TGTGTACTACTGCAGAAATT+CGG + chr7_3:78396397-78396416 Msa1126830:intron 35.0%
CTGTTTATGCACATGATACT+TGG + chr7_3:78396730-78396749 Msa1126830:intron 35.0%
CTAATTTACGTTAAGTCCCA+AGG - chr7_3:78396989-78397008 None:intergenic 35.0%
ACTACTGTGTTCATATGCAT+TGG + chr7_3:78397011-78397030 Msa1126830:intron 35.0%
TTGGGACCGAAAATTGTAAA+GGG + chr7_3:78397147-78397166 Msa1126830:intron 35.0%
! GGAGATCCCTTTACAATTTT+CGG - chr7_3:78397156-78397175 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG + chr7_3:78397215-78397234 Msa1126830:intron 35.0%
! GAGCATCTAGTTCAAAAAAG+GGG - chr7_3:78397762-78397781 None:intergenic 35.0%
GATCTATAATTGGGAAACAC+GGG - chr7_3:78397838-78397857 None:intergenic 35.0%
CTTAAAACTACACCACTGAA+TGG - chr7_3:78398021-78398040 None:intergenic 35.0%
!!! TTCAGTGGTGTAGTTTTAAG+TGG + chr7_3:78398021-78398040 Msa1126830:three_prime_UTR 35.0%
!!! TCAGTGGTGTAGTTTTAAGT+GGG + chr7_3:78398022-78398041 Msa1126830:three_prime_UTR 35.0%
ACTACTGTGATTAAACCTTG+TGG - chr7_3:78398239-78398258 None:intergenic 35.0%
ACTAAACTCATCGCATTGAA+CGG + chr7_3:78398312-78398331 Msa1126830:three_prime_UTR 35.0%
GAGATTGTACCTCATGTTGT+TGG - chr7_3:78394886-78394905 None:intergenic 40.0%
GCTTATGTGATGAAATCGGA+AGG - chr7_3:78394967-78394986 None:intergenic 40.0%
CCGATTTCATCACATAAGCT+TGG + chr7_3:78394968-78394987 Msa1126830:intron 40.0%
GCAGATTGTGATGGCAAATT+TGG + chr7_3:78395215-78395234 Msa1126830:intron 40.0%
!! TTTACCTTTTCTGGTAGTGC+TGG + chr7_3:78395514-78395533 Msa1126830:CDS 40.0%
GAAACTTGAGCTCTTTGACA+AGG + chr7_3:78395561-78395580 Msa1126830:CDS 40.0%
!! GGTCGCAAGCATTTTTAGAA+TGG + chr7_3:78395692-78395711 Msa1126830:intron 40.0%
CTGCAATCAAAGAGTCATGA+AGG - chr7_3:78395760-78395779 None:intergenic 40.0%
CTTCATGACTCTTTGATTGC+AGG + chr7_3:78395758-78395777 Msa1126830:intron 40.0%
CATATTCTGTGTAGTGCAGA+AGG + chr7_3:78395809-78395828 Msa1126830:CDS 40.0%
TAAATGGGTCGATGAAGATG+AGG + chr7_3:78395905-78395924 Msa1126830:CDS 40.0%
! CGAATTGTCTCGGTTTTTGT+TGG + chr7_3:78396007-78396026 Msa1126830:intron 40.0%
! CAATGCAAGCCTACTACTTT+TGG - chr7_3:78396186-78396205 None:intergenic 40.0%
CAAAAGTAGTAGGCTTGCAT+TGG + chr7_3:78396184-78396203 Msa1126830:intron 40.0%
TCTAACCTCTTCAATTGGTG+GGG + chr7_3:78396280-78396299 Msa1126830:intron 40.0%
GATATGATCCATTGGACAGA+TGG + chr7_3:78396306-78396325 Msa1126830:intron 40.0%
TGTGTACTGCAGAAATTTGC+TGG + chr7_3:78396620-78396639 Msa1126830:intron 40.0%
! GTGTACTGCAGAAATTTGCT+GGG + chr7_3:78396621-78396640 Msa1126830:intron 40.0%
CTTGGGACCGAAAATTGTAA+AGG + chr7_3:78397146-78397165 Msa1126830:intron 40.0%
! TTTTTACATTGGCCCAAGTC+GGG + chr7_3:78397216-78397235 Msa1126830:intron 40.0%
CGTTGTTAACATGAGGGTTA+AGG + chr7_3:78397399-78397418 Msa1126830:intron 40.0%
!! TCAATTTGAGGGCATTCACT+TGG + chr7_3:78397593-78397612 Msa1126830:intron 40.0%
!! CAATTTGAGGGCATTCACTT+GGG + chr7_3:78397594-78397613 Msa1126830:intron 40.0%
GAAAGGGGGTTAAAGAAAAG+AGG + chr7_3:78397616-78397635 Msa1126830:intron 40.0%
TAGTTGCTTGACATGGCTAT+TGG + chr7_3:78397709-78397728 Msa1126830:intron 40.0%
AGTTGCTTGACATGGCTATT+GGG + chr7_3:78397710-78397729 Msa1126830:intron 40.0%
TGCAAGGTTATTATGTGCTC+GGG - chr7_3:78397943-78397962 None:intergenic 40.0%
CTGCAAGGTTATTATGTGCT+CGG - chr7_3:78397944-78397963 None:intergenic 40.0%
TCTTCAAATCTTGCACTGCA+AGG - chr7_3:78397959-78397978 None:intergenic 40.0%
GTTAAGTCAACACAGCAAAG+AGG - chr7_3:78398060-78398079 None:intergenic 40.0%
!! TGCTGTGTTGACTTAACAGT+AGG + chr7_3:78398063-78398082 Msa1126830:three_prime_UTR 40.0%
GTCTCGATGGAAAAGAATGT+TGG + chr7_3:78398148-78398167 Msa1126830:three_prime_UTR 40.0%
CTAAACTCATCGCATTGAAC+GGG + chr7_3:78398313-78398332 Msa1126830:three_prime_UTR 40.0%
! TGATACTAGCCTGCTTATGC+TGG + chr7_3:78395668-78395687 Msa1126830:intron 45.0%
CAGGAGAGCAAAATCAGTGT+AGG + chr7_3:78395777-78395796 Msa1126830:intron 45.0%
GATGAAGATGAGGCTGAAGA+AGG + chr7_3:78395915-78395934 Msa1126830:CDS 45.0%
! TGTCTCGGTTTTTGTTGGTC+AGG + chr7_3:78396012-78396031 Msa1126830:intron 45.0%
!! TGATGTTGACTTGGGAGGAA+TGG + chr7_3:78396041-78396060 Msa1126830:intron 45.0%
! CTTGGGAGGAATGGATTTCT+CGG + chr7_3:78396050-78396069 Msa1126830:intron 45.0%
AAATGCCACAAGTGCCCTTA+AGG + chr7_3:78396145-78396164 Msa1126830:intron 45.0%
! TGCCCTTAAGGCACTTGTTA+AGG + chr7_3:78396157-78396176 Msa1126830:intron 45.0%
TGGGGTGTGATATGATCCAT+TGG + chr7_3:78396298-78396317 Msa1126830:intron 45.0%
GTACTACTGCAGAAATTCGG+CGG + chr7_3:78396400-78396419 Msa1126830:intron 45.0%
TACTACTGCAGAAATTCGGC+GGG + chr7_3:78396401-78396420 Msa1126830:intron 45.0%
! ATGGGTGGTGATGATCCAAT+GGG + chr7_3:78396424-78396443 Msa1126830:CDS 45.0%
TGATGATCCAATGGGAGGAA+TGG + chr7_3:78396432-78396451 Msa1126830:CDS 45.0%
GATGATCCAATGGGAGGAAT+GGG + chr7_3:78396433-78396452 Msa1126830:CDS 45.0%
!! ACTGCAGAAATTTGCTGGGA+TGG + chr7_3:78396625-78396644 Msa1126830:intron 45.0%
!! CTGCAGAAATTTGCTGGGAT+GGG + chr7_3:78396626-78396645 Msa1126830:intron 45.0%
ATTGACGAGAGTGACGATGA+AGG + chr7_3:78396668-78396687 Msa1126830:CDS 45.0%
CGCTGCAACGTAATTCTAAG+AGG - chr7_3:78396964-78396983 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG + chr7_3:78396969-78396988 Msa1126830:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG + chr7_3:78396970-78396989 Msa1126830:intron 45.0%
! AAGGATGTTAGCTCGAGTTG+CGG + chr7_3:78397418-78397437 Msa1126830:intron 45.0%
!! GATCAAGAAGTGTCAAAGCC+TGG + chr7_3:78397854-78397873 Msa1126830:intron 45.0%
GCAAGGTTATTATGTGCTCG+GGG - chr7_3:78397942-78397961 None:intergenic 45.0%
! TTCCTCTTTGTGCCATTCAG+TGG + chr7_3:78398006-78398025 Msa1126830:three_prime_UTR 45.0%
ACACAGCAAAGAGGACACAA+AGG - chr7_3:78398051-78398070 None:intergenic 45.0%
!!! ATAATAAGATAATAATTTTT+CGG - chr7_3:78397178-78397197 None:intergenic 5.0%
TCGTCATCCCGAGGTTAAGT+GGG + chr7_3:78395408-78395427 Msa1126830:CDS 50.0%
TCTCTGTGCCCACTTAACCT+CGG - chr7_3:78395419-78395438 None:intergenic 50.0%
GGTCTACATCACAGTGCAGT+TGG + chr7_3:78395447-78395466 Msa1126830:CDS 50.0%
AGCACCAGCACTACCAGAAA+AGG - chr7_3:78395521-78395540 None:intergenic 50.0%
!!! TTTTCTGGTAGTGCTGGTGC+TGG + chr7_3:78395520-78395539 Msa1126830:CDS 50.0%
! TACTAGCCTGCTTATGCTGG+TGG + chr7_3:78395671-78395690 Msa1126830:intron 50.0%
! CTCGGTTTTTGTTGGTCAGG+TGG + chr7_3:78396015-78396034 Msa1126830:intron 50.0%
! GGTTTTTGTTGGTCAGGTGG+TGG + chr7_3:78396018-78396037 Msa1126830:intron 50.0%
! AGGTGGTGGTGATGTTGACT+TGG + chr7_3:78396032-78396051 Msa1126830:intron 50.0%
!! GGTGGTGGTGATGTTGACTT+GGG + chr7_3:78396033-78396052 Msa1126830:intron 50.0%
!! AAGTGCCTTAAGGGCACTTG+TGG - chr7_3:78396153-78396172 None:intergenic 50.0%
TCACACCCCACCAATTGAAG+AGG - chr7_3:78396288-78396307 None:intergenic 50.0%
! GATGGGTGGTGATGATCCAA+TGG + chr7_3:78396423-78396442 Msa1126830:CDS 50.0%
ATGGGAGGAATGGAAGGACT+GGG + chr7_3:78396508-78396527 Msa1126830:CDS 50.0%
AATGGAAGGACTGGGAGGAA+TGG + chr7_3:78396516-78396535 Msa1126830:CDS 50.0%
!! CAGAAATTTGCTGGGATGGG+TGG + chr7_3:78396629-78396648 Msa1126830:intron 50.0%
AATTTGTCCGGTCCCGACTT+GGG - chr7_3:78397231-78397250 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG - chr7_3:78397232-78397251 None:intergenic 50.0%
!! TGAGGGCATTCACTTGGGAA+AGG + chr7_3:78397599-78397618 Msa1126830:intron 50.0%
!! GAGGGCATTCACTTGGGAAA+GGG + chr7_3:78397600-78397619 Msa1126830:intron 50.0%
! AGGGCATTCACTTGGGAAAG+GGG + chr7_3:78397601-78397620 Msa1126830:intron 50.0%
CACCACTGAATGGCACAAAG+AGG - chr7_3:78398011-78398030 None:intergenic 50.0%
ATGATGCAGTCGTCATCCCG+AGG + chr7_3:78395399-78395418 Msa1126830:intron 55.0%
GTCGTCATCCCGAGGTTAAG+TGG + chr7_3:78395407-78395426 Msa1126830:intron 55.0%
CTCTGTGCCCACTTAACCTC+GGG - chr7_3:78395418-78395437 None:intergenic 55.0%
GTGGGCACAGAGAGTAGACA+AGG + chr7_3:78395426-78395445 Msa1126830:CDS 55.0%
TTGCGACCACCAGCATAAGC+AGG - chr7_3:78395680-78395699 None:intergenic 55.0%
GTAGTGCAGAAGGCTGAGAG+TGG + chr7_3:78395819-78395838 Msa1126830:CDS 55.0%
TGCAGAAGGCTGAGAGTGGA+TGG + chr7_3:78395823-78395842 Msa1126830:CDS 55.0%
AGAAGGCTGAGAGTGGATGG+TGG + chr7_3:78395826-78395845 Msa1126830:CDS 55.0%
!! CTGAGAGTGGATGGTGGAAG+AGG + chr7_3:78395832-78395851 Msa1126830:CDS 55.0%
AAGAGGTTGCTGCGTGGAGA+AGG + chr7_3:78395849-78395868 Msa1126830:CDS 55.0%
!! GGTGGTGATGTTGACTTGGG+AGG + chr7_3:78396036-78396055 Msa1126830:intron 55.0%
ACTGCAGAAATTCGGCGGGA+TGG + chr7_3:78396405-78396424 Msa1126830:intron 55.0%
CTGCAGAAATTCGGCGGGAT+GGG + chr7_3:78396406-78396425 Msa1126830:intron 55.0%
! GGTGGTGATGATCCAATGGG+AGG + chr7_3:78396427-78396446 Msa1126830:CDS 55.0%
GATCCAATGGGAGGAATGGG+AGG + chr7_3:78396436-78396455 Msa1126830:CDS 55.0%
ATGCCTCCCATTCCTCCCAT+TGG - chr7_3:78396442-78396461 None:intergenic 55.0%
AATGGGAGGAATGGGAGGCA+TGG + chr7_3:78396441-78396460 Msa1126830:CDS 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG + chr7_3:78396442-78396461 Msa1126830:CDS 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG + chr7_3:78396442-78396461 Msa1126830:CDS 55.0%
! AATGGGAGGCATGGGAGGAA+TGG + chr7_3:78396498-78396517 Msa1126830:CDS 55.0%
CATGGGAGGAATGGAAGGAC+TGG + chr7_3:78396507-78396526 Msa1126830:CDS 55.0%
! TGGGATGGGTGGTGATGCAA+TGG + chr7_3:78396640-78396659 Msa1126830:CDS 55.0%
! GTTAGCTCGAGTTGCGGAAG+TGG + chr7_3:78397424-78397443 Msa1126830:intron 55.0%
GGGCATTCACTTGGGAAAGG+GGG + chr7_3:78397602-78397621 Msa1126830:intron 55.0%
! CTTTTCCATCGAGACAGCGC+TGG - chr7_3:78398143-78398162 None:intergenic 55.0%
TGGTGGAAGAGGTTGCTGCG+TGG + chr7_3:78395843-78395862 Msa1126830:CDS 60.0%
GTTGCTGCGTGGAGAAGGCA+AGG + chr7_3:78395854-78395873 Msa1126830:CDS 60.0%
CAGAAATTCGGCGGGATGGG+TGG + chr7_3:78396409-78396428 Msa1126830:intron 60.0%
! GGCGGCTTGGGAGGAATGAT+GGG + chr7_3:78396463-78396482 Msa1126830:CDS 60.0%
! GCGGCTTGGGAGGAATGATG+GGG + chr7_3:78396464-78396483 Msa1126830:CDS 60.0%
! CGGCTTGGGAGGAATGATGG+GGG + chr7_3:78396465-78396484 Msa1126830:CDS 60.0%
! GGCTTGGGAGGAATGATGGG+GGG + chr7_3:78396466-78396485 Msa1126830:CDS 60.0%
! GGAGGAATGATGGGGGGCAT+GGG + chr7_3:78396472-78396491 Msa1126830:CDS 60.0%
! ATGGGGGGCATGGGAGGAAT+GGG + chr7_3:78396481-78396500 Msa1126830:CDS 60.0%
CATGGGAGGAATGGGAGGCA+TGG + chr7_3:78396489-78396508 Msa1126830:CDS 60.0%
! GGAGGCATGGGAGGAATGGA+AGG + chr7_3:78396502-78396521 Msa1126830:CDS 60.0%
GGAGGAATGGAAGGACTGGG+AGG + chr7_3:78396511-78396530 Msa1126830:CDS 60.0%
ACATTGGCCCAAGTCGGGAC+CGG + chr7_3:78397221-78397240 Msa1126830:intron 60.0%
CCAGCAGCATCTTGCTCTCC+AGG - chr7_3:78397875-78397894 None:intergenic 60.0%
CCTGGAGAGCAAGATGCTGC+TGG + chr7_3:78397872-78397891 Msa1126830:CDS 60.0%
TCTAGCCAGCGCTGTCTCGA+TGG + chr7_3:78398135-78398154 Msa1126830:three_prime_UTR 60.0%
! GGAGGAATGGGAGGCATGGG+CGG + chr7_3:78396445-78396464 Msa1126830:CDS 65.0%
! AATGGGAGGCATGGGCGGCT+TGG + chr7_3:78396450-78396469 Msa1126830:CDS 65.0%
! ATGGGAGGCATGGGCGGCTT+GGG + chr7_3:78396451-78396470 Msa1126830:CDS 65.0%
! GGGCGGCTTGGGAGGAATGA+TGG + chr7_3:78396462-78396481 Msa1126830:CDS 65.0%
! GGGAGGAATGATGGGGGGCA+TGG + chr7_3:78396471-78396490 Msa1126830:CDS 65.0%
! GGAATGATGGGGGGCATGGG+AGG + chr7_3:78396475-78396494 Msa1126830:CDS 65.0%
! GATGGGGGGCATGGGAGGAA+TGG + chr7_3:78396480-78396499 Msa1126830:CDS 65.0%
! GGAGGAATGGGAGGCATGGG+AGG + chr7_3:78396445-78396464 Msa1126830:CDS 65.0%
! GATGCTGCTGGCAAGAGCGC+TGG + chr7_3:78397884-78397903 Msa1126830:CDS 65.0%
!! TGCTGGCAAGAGCGCTGGTG+AGG + chr7_3:78397889-78397908 Msa1126830:CDS 65.0%
! GGGGGCATGGGAGGAATGGG+AGG + chr7_3:78396484-78396503 Msa1126830:CDS 70.0%
! GGAGGCATGGGCGGCTTGGG+AGG + chr7_3:78396454-78396473 Msa1126830:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78394804 78398352 78394804 ID=Msa1126830;Name=Msa1126830
chr7_3 mRNA 78394804 78398352 78394804 ID=Msa1126830-mRNA-1;Parent=Msa1126830;Name=Msa1126830-mRNA-1;_AED=0.19;_eAED=0.19;_QI=87|0.83|0.85|1|1|1|7|400|216
chr7_3 exon 78394804 78394895 78394804 ID=Msa1126830-mRNA-1:exon:21899;Parent=Msa1126830-mRNA-1
chr7_3 exon 78395408 78395594 78395408 ID=Msa1126830-mRNA-1:exon:21900;Parent=Msa1126830-mRNA-1
chr7_3 exon 78395780 78395936 78395780 ID=Msa1126830-mRNA-1:exon:21901;Parent=Msa1126830-mRNA-1
chr7_3 exon 78396034 78396044 78396034 ID=Msa1126830-mRNA-1:exon:21902;Parent=Msa1126830-mRNA-1
chr7_3 exon 78396412 78396546 78396412 ID=Msa1126830-mRNA-1:exon:21903;Parent=Msa1126830-mRNA-1
chr7_3 exon 78396632 78396689 78396632 ID=Msa1126830-mRNA-1:exon:21904;Parent=Msa1126830-mRNA-1
chr7_3 exon 78397855 78398352 78397855 ID=Msa1126830-mRNA-1:exon:21905;Parent=Msa1126830-mRNA-1
chr7_3 five_prime_UTR 78394804 78394890 78394804 ID=Msa1126830-mRNA-1:five_prime_utr;Parent=Msa1126830-mRNA-1
chr7_3 CDS 78394891 78394895 78394891 ID=Msa1126830-mRNA-1:cds;Parent=Msa1126830-mRNA-1
chr7_3 CDS 78395408 78395594 78395408 ID=Msa1126830-mRNA-1:cds;Parent=Msa1126830-mRNA-1
chr7_3 CDS 78395780 78395936 78395780 ID=Msa1126830-mRNA-1:cds;Parent=Msa1126830-mRNA-1
chr7_3 CDS 78396034 78396044 78396034 ID=Msa1126830-mRNA-1:cds;Parent=Msa1126830-mRNA-1
chr7_3 CDS 78396412 78396546 78396412 ID=Msa1126830-mRNA-1:cds;Parent=Msa1126830-mRNA-1
chr7_3 CDS 78396632 78396689 78396632 ID=Msa1126830-mRNA-1:cds;Parent=Msa1126830-mRNA-1
chr7_3 CDS 78397855 78397952 78397855 ID=Msa1126830-mRNA-1:cds;Parent=Msa1126830-mRNA-1
chr7_3 three_prime_UTR 78397953 78398352 78397953 ID=Msa1126830-mRNA-1:three_prime_utr;Parent=Msa1126830-mRNA-1
Gene Sequence

>Msa1126830

ATGAGTCGTCATCCCGAGGTTAAGTGGGCACAGAGAGTAGACAAGGTCTACATCACAGTGCAGTTGGCTGATTCCAAAAATTCCAAAGTTGATCTTACTCCAGAAGGTGATTTTACCTTTTCTGGTAGTGCTGGTGCTGGAGACAATCAGTATGAGCTGAAACTTGAGCTCTTTGACAAGGTTAATGTAGAGGAGAGCAAAATCAGTGTAGGAGTGCGAAACATATTCTGTGTAGTGCAGAAGGCTGAGAGTGGATGGTGGAAGAGGTTGCTGCGTGGAGAAGGCAAGGCTCCTCATTATGTGAAAATAGATTGGGATAAATGGGTCGATGAAGATGAGGCTGAAGAAGGTGGTGGTGATAAATTCGGCGGGATGGGTGGTGATGATCCAATGGGAGGAATGGGAGGCATGGGCGGCTTGGGAGGAATGATGGGGGGCATGGGAGGAATGGGAGGCATGGGAGGAATGGAAGGACTGGGAGGAATGGACTTCTCTAAATTTGCTGGGATGGGTGGTGATGCAATGGATGATATTGACGAGAGTGACGATGAAGATCAAGAAGTGTCAAAGCCTGGAGAGCAAGATGCTGCTGGCAAGAGCGCTGGTGAGGCAGCTACAGAGAGTAAAGTAGAAGCTACCCCGAGCACATAA

Protein sequence

>Msa1126830

MSRHPEVKWAQRVDKVYITVQLADSKNSKVDLTPEGDFTFSGSAGAGDNQYELKLELFDKVNVEESKISVGVRNIFCVVQKAESGWWKRLLRGEGKAPHYVKIDWDKWVDEDEAEEGGGDKFGGMGGDDPMGGMGGMGGLGGMMGGMGGMGGMGGMEGLGGMDFSKFAGMGGDAMDDIDESDDEDQEVSKPGEQDAAGKSAGEAATESKVEATPST*