AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0561420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561420 MtrunA17_Chr4g0051911 92.292 493 17 4 1 487 1 478 0.0 846
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561420 AT4G18240.1 55.196 433 165 6 55 487 135 538 3.26e-132 408

Find 221 sgRNAs with CRISPR-Local

Find 651 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTGCATGCAGTCATATT+TGG 0.165615 4_1:-60945067 None:intergenic
CCATAACAGGTTGGTGGCTT+GGG 0.176401 4_1:+60944979 Msa0561420:intron
TCAAAGGAAGGTTGATAAAT+TGG 0.177835 4_1:+60943358 Msa0561420:CDS
CTAGCTGAATTTAATCCTTT+TGG 0.194710 4_1:-60945646 None:intergenic
GAATCATCGTGATCAGATTT+TGG 0.207155 4_1:-60941630 None:intergenic
AAGTTCATCGGTGTTCTTAA+TGG 0.242169 4_1:+60946807 Msa0561420:three_prime_UTR
CCTCCACAGTTCTCACTTCT+TGG 0.247602 4_1:-60945947 None:intergenic
ATCATCCTGATAAGTTCTTT+TGG 0.274259 4_1:+60945378 Msa0561420:three_prime_UTR
TTCTATCTGGTCTGTTTAGA+TGG 0.276149 4_1:-60945750 None:intergenic
CAATTATTGCTTCTAATTGA+TGG 0.276345 4_1:+60943635 Msa0561420:CDS
CTCTGCTCCGTTTACATTCA+AGG 0.280109 4_1:-60942568 None:intergenic
AAGATATGCCGTGGGAATTC+TGG 0.284215 4_1:+60943609 Msa0561420:CDS
TCCATAACAGGTTGGTGGCT+TGG 0.292024 4_1:+60944978 Msa0561420:intron
TCAAGGGAAAGCAGAGAATA+AGG 0.293067 4_1:+60946899 Msa0561420:three_prime_UTR
TACGCGCAATTAATCTCTTC+AGG 0.302897 4_1:+60950467 Msa0561420:three_prime_UTR
GCTATGCTAACCTGTCATTT+AGG 0.323249 4_1:-60949816 None:intergenic
CATGTCAGACGCAGCATAAA+TGG 0.325896 4_1:-60949308 None:intergenic
GAGGCTATATCTGCATTTCT+TGG 0.334967 4_1:+60943776 Msa0561420:CDS
TCTGCCAGGCTCCTTTATAC+TGG 0.336365 4_1:+60945611 Msa0561420:intron
TCTTTCTCGTTCCCCATTGA+AGG 0.343180 4_1:+60941284 Msa0561420:five_prime_UTR
GTGGAATTATTATTAGTATC+AGG 0.344166 4_1:-60941684 None:intergenic
AGACATCCTTCTTATAAATC+AGG 0.344850 4_1:+60942761 Msa0561420:intron
ACAAGATTGGTTCCACAAAA+AGG 0.345815 4_1:+60948048 Msa0561420:three_prime_UTR
TGATGAACGTTTGGTGGTAT+TGG 0.348885 4_1:+60943130 Msa0561420:CDS
AATCTGAATTGATCCTTCAA+TGG 0.355025 4_1:-60941297 None:intergenic
AGGACACACAGGCTTGTCTT+TGG 0.355382 4_1:-60941257 None:intergenic
GAGTTGTCCTGCATTCTATC+TGG 0.360248 4_1:-60945763 None:intergenic
GAGTATTAGTGATGTATATA+TGG 0.362578 4_1:+60943730 Msa0561420:CDS
ATCTGAATTGATCCTTCAAT+GGG 0.365142 4_1:-60941296 None:intergenic
TATTGCATGCAGTCATATTT+GGG 0.368001 4_1:-60945066 None:intergenic
ATCAATTCAGATTGAAAGAA+TGG 0.368339 4_1:+60941307 Msa0561420:exon
CCTCTCCAAAAGAACTTATC+AGG 0.369301 4_1:-60945383 None:intergenic
ACAAAGGCCATACATGTAAA+TGG 0.370400 4_1:+60950958 Msa0561420:three_prime_UTR
TCATGACAATGAATGATATC+TGG 0.373989 4_1:-60945494 None:intergenic
GCAGCAAAAGATAAAACTAT+TGG 0.374806 4_1:+60943451 Msa0561420:CDS
GGAGGTCAATTTGTTCTACT+TGG 0.376408 4_1:+60948114 Msa0561420:three_prime_UTR
GGACACACAGGCTTGTCTTT+GGG 0.376898 4_1:-60941256 None:intergenic
CCTTACTGAGGAGCTTAATT+CGG 0.377587 4_1:+60943034 Msa0561420:CDS
ATGGTATTGACACTGATATA+TGG 0.386658 4_1:+60946826 Msa0561420:three_prime_UTR
AAGTGAGAAATGTTGCTTCA+TGG 0.387949 4_1:-60950827 None:intergenic
GTTGTAACCATTTACATGTA+TGG 0.389152 4_1:-60950965 None:intergenic
TGTTGTCATGATTCTTGAAA+TGG 0.390398 4_1:-60949246 None:intergenic
ATCTGGGTTGGCACTGTTGA+AGG 0.393577 4_1:+60945255 Msa0561420:three_prime_UTR
GTAAGGGATGCATAAGATAA+TGG 0.397735 4_1:-60943859 None:intergenic
CAACCTTCCTTTGAAGATCC+TGG 0.399688 4_1:-60943349 None:intergenic
CATAACAGGTTGGTGGCTTG+GGG 0.403639 4_1:+60944980 Msa0561420:intron
ATACAATACCTTCACAGTTT+CGG 0.403883 4_1:+60949921 Msa0561420:three_prime_UTR
ATATCATTCATTGTCATGAT+TGG 0.404496 4_1:+60945498 Msa0561420:three_prime_UTR
TTAGTATCAGGCACTACAAT+TGG 0.406866 4_1:-60941672 None:intergenic
ACAAGTTGCTTCCAACTCTC+AGG 0.410557 4_1:-60950496 None:intergenic
TACAAAATGCAGGGAGGTAA+AGG 0.411092 4_1:+60946753 Msa0561420:intron
CATGCGGGATGCGGCAGAAA+CGG 0.411499 4_1:+60941213 Msa0561420:five_prime_UTR
CTCACTTCTTGGGCGTAAGT+AGG 0.414308 4_1:-60945936 None:intergenic
GACAGTTCAGATACATCTTC+CGG 0.414870 4_1:-60943215 None:intergenic
GCATATATGTCCCAGTATAA+AGG 0.416270 4_1:-60945622 None:intergenic
GCGTAATGAGTTGGCCGAAA+AGG 0.418873 4_1:+60942953 Msa0561420:CDS
CCGAATTAAGCTCCTCAGTA+AGG 0.421532 4_1:-60943034 None:intergenic
AGGCTATATCTGCATTTCTT+GGG 0.422991 4_1:+60943777 Msa0561420:CDS
ATGCGGGATGCGGCAGAAAC+GGG 0.424687 4_1:+60941214 Msa0561420:five_prime_UTR
GAAGATCATTTGCACTGTAC+TGG 0.432795 4_1:-60946878 None:intergenic
ATGACCTGGATATGTGGAAC+TGG 0.432799 4_1:-60948144 None:intergenic
ATGCAAGCATTTATCAGATA+AGG 0.434574 4_1:+60943253 Msa0561420:CDS
AAATAGGCCTTGAATGTAAA+CGG 0.437824 4_1:+60942561 Msa0561420:intron
TATAGACGTTAGCTTCTTCA+AGG 0.438048 4_1:-60943388 None:intergenic
TTTCTTCTGCAGATGTTAAG+AGG 0.439149 4_1:+60946946 Msa0561420:three_prime_UTR
CTCCACAGTTCTCACTTCTT+GGG 0.439457 4_1:-60945946 None:intergenic
TCACTTCTTGGGCGTAAGTA+GGG 0.443182 4_1:-60945935 None:intergenic
TGGGGCTCAATGAAATAAAC+AGG 0.444627 4_1:-60945356 None:intergenic
GGTTGGCTGCATAACAAGAT+TGG 0.444710 4_1:+60948035 Msa0561420:intron
TCAAGAATCATGACAACATA+AGG 0.445108 4_1:+60949251 Msa0561420:three_prime_UTR
GAGATTAATTGCGCGTACTA+AGG 0.453266 4_1:-60950461 None:intergenic
CTGTACTGGACTTCAAGAAA+TGG 0.459297 4_1:-60946864 None:intergenic
AGTGGGTAGAGAGGGTTGAA+TGG 0.459646 4_1:-60946779 None:intergenic
CTTGAGTTTCTTCTTCAAGC+TGG 0.459726 4_1:+60945464 Msa0561420:three_prime_UTR
TGAAAGAATGGCTTCGAAGC+TGG 0.461646 4_1:+60941319 Msa0561420:exon
CAGACGCAGCATAAATGGTA+TGG 0.463540 4_1:-60949303 None:intergenic
AAAAGAACTTATCAGGATGA+TGG 0.466946 4_1:-60945376 None:intergenic
CGTAATGAGTTGGCCGAAAA+GGG 0.468079 4_1:+60942954 Msa0561420:CDS
TGCACTTGAAGATCTTCAAA+AGG 0.468986 4_1:+60942794 Msa0561420:CDS
ACAGTTGTCTGGTGGTCAAT+TGG 0.469922 4_1:+60942599 Msa0561420:CDS
CATTACGCAGTTTCTCCAAC+TGG 0.471171 4_1:-60942938 None:intergenic
ATTCTCTAGAGAGAATTTGA+AGG 0.471383 4_1:+60949214 Msa0561420:intron
GTTTCTGCCGCATCCCGCAT+GGG 0.474033 4_1:-60941211 None:intergenic
CTCTAGCCTGATTTATAAGA+AGG 0.474319 4_1:-60942767 None:intergenic
GAAAATATGACCTGGATATG+TGG 0.475465 4_1:-60948150 None:intergenic
AATATATCTAACACTGGAGC+TGG 0.478866 4_1:+60948092 Msa0561420:three_prime_UTR
CGTTTCTGCCGCATCCCGCA+TGG 0.479051 4_1:-60941212 None:intergenic
GAATGTAAACGGAGCAGAGC+AGG 0.479325 4_1:+60942572 Msa0561420:CDS
CAGATGATTTCAATGAGATA+TGG 0.481201 4_1:+60949763 Msa0561420:intron
ATCAAAACTGTCAATATCTC+CGG 0.481623 4_1:+60943196 Msa0561420:CDS
TATTGCTTCTAATTGATGGT+TGG 0.484247 4_1:+60943639 Msa0561420:CDS
TCCATTGACGGAGGAGGAGG+AGG 0.484470 4_1:+60941597 Msa0561420:CDS
TACAGTGCAAATGATCTTCA+AGG 0.485397 4_1:+60946882 Msa0561420:three_prime_UTR
ACGTTTGGTGGTATTGGAAA+AGG 0.486193 4_1:+60943136 Msa0561420:CDS
ATTCTTGCAGGCTTTGGATG+TGG 0.488180 4_1:+60945191 Msa0561420:intron
CCATCGATCTTTGAACCTTG+TGG 0.489475 4_1:+60949340 Msa0561420:three_prime_UTR
TTGTTTCCATAACAGGTTGG+TGG 0.497200 4_1:+60944973 Msa0561420:intron
CTTCAAGCACTATAACGGCT+TGG 0.498601 4_1:-60943322 None:intergenic
CTGATCTACCATCTCTGTGT+TGG 0.498744 4_1:-60950674 None:intergenic
AAGTAAAGCATTGCAAAAGA+AGG 0.499408 4_1:+60945020 Msa0561420:three_prime_UTR
CTGAAGCTGCTGCAGTCCCT+TGG 0.506177 4_1:-60945699 None:intergenic
CAAGAACAATGATGAACGTT+TGG 0.507566 4_1:+60943121 Msa0561420:CDS
TAGAGATGTTCTTGCATGGA+AGG 0.507926 4_1:-60950735 None:intergenic
AGAGATGGCACCAGTGGCTA+AGG 0.508859 4_1:+60943925 Msa0561420:three_prime_UTR
AAAGAACTTATCAGGATGAT+GGG 0.509934 4_1:-60945375 None:intergenic
TGCGACACCACCGTATTCTC+AGG 0.511703 4_1:+60941438 Msa0561420:CDS
ATATGAATCACATATAATCC+TGG 0.512442 4_1:-60943896 None:intergenic
GAGCAGGCTGAACAGTTGTC+TGG 0.513578 4_1:+60942588 Msa0561420:CDS
TCAAGAAATGGATCAGTAGC+AGG 0.515259 4_1:-60946852 None:intergenic
AAACTGGTGGCCTAAATGAC+AGG 0.519105 4_1:+60949806 Msa0561420:three_prime_UTR
AGGTAAGGTACCTGAGAATA+CGG 0.519780 4_1:-60941448 None:intergenic
CTGCCAGGCTCCTTTATACT+GGG 0.520116 4_1:+60945612 Msa0561420:intron
AAGTCCAGTTCCACATATCC+AGG 0.520172 4_1:+60948140 Msa0561420:three_prime_UTR
GCGGATTGAAGTTGCTGACC+AGG 0.521108 4_1:+60942887 Msa0561420:CDS
TTCTTCAGCAGCACAATATG+AGG 0.521236 4_1:+60950552 Msa0561420:three_prime_UTR
AAATATCCCCATGCGGGATG+CGG 0.526846 4_1:+60941204 Msa0561420:five_prime_UTR
TGCATGAGCTTCATAATGAT+AGG 0.529529 4_1:+60943003 Msa0561420:CDS
GTAATAGAGTCATACTTTGA+TGG 0.529982 4_1:+60945213 Msa0561420:three_prime_UTR
ATTAATAAATATCCCCATGC+GGG 0.532708 4_1:+60941198 Msa0561420:five_prime_UTR
GACTGCAGCAGCTTCAGAGT+TGG 0.533533 4_1:+60945705 Msa0561420:three_prime_UTR
CCTCCTCCGTCAATGGAAGA+TGG 0.534161 4_1:-60941591 None:intergenic
TGGGACATATATGCCCCAAA+AGG 0.536974 4_1:+60945631 Msa0561420:three_prime_UTR
TGAACAGCCATACCTGTGTT+AGG 0.537120 4_1:-60949363 None:intergenic
ACGCGCAATTAATCTCTTCA+GGG 0.538504 4_1:+60950468 Msa0561420:three_prime_UTR
TCTTCCATTGACGGAGGAGG+AGG 0.538753 4_1:+60941594 Msa0561420:CDS
TAAGATTGAAATGATAGCAC+AGG 0.539125 4_1:-60950644 None:intergenic
TCAGGGACGACCCTGAGAGT+TGG 0.541248 4_1:+60950485 Msa0561420:three_prime_UTR
TGAAGGGGATACCGAGGGTG+TGG 0.545888 4_1:-60941703 None:intergenic
TCCCACGGCATATCTTCCAC+TGG 0.546811 4_1:-60943602 None:intergenic
ATACCTTCACAGTTTCGGAA+TGG 0.546994 4_1:+60949926 Msa0561420:three_prime_UTR
AAGACCTAGATTCTTTCTCA+AGG 0.548744 4_1:-60946925 None:intergenic
TTGGAAGCAACTTGTTCAGA+AGG 0.549083 4_1:+60950504 Msa0561420:three_prime_UTR
GAAGCCTTGAGAAAGAATCT+AGG 0.549769 4_1:+60946921 Msa0561420:three_prime_UTR
CACTTCTTGGGCGTAAGTAG+GGG 0.550373 4_1:-60945934 None:intergenic
GATTCATATTGCAGCAGAGA+TGG 0.551113 4_1:+60943910 Msa0561420:three_prime_UTR
CCATCTTCCATTGACGGAGG+AGG 0.551863 4_1:+60941591 Msa0561420:CDS
TGAACTCATGGAGGGCCAGT+TGG 0.552690 4_1:+60942923 Msa0561420:CDS
TGCAGATGTTAAGAGGCCAT+TGG 0.553063 4_1:+60946953 Msa0561420:three_prime_UTR
AAAGACGCATGTTGAACTCA+TGG 0.553552 4_1:+60942911 Msa0561420:CDS
AAGCACTATAACGGCTTGGT+CGG 0.559921 4_1:-60943318 None:intergenic
ATAACAGGTTGGTGGCTTGG+GGG 0.560247 4_1:+60944981 Msa0561420:intron
TTCAATGGGGAACGAGAAAG+AGG 0.560852 4_1:-60941282 None:intergenic
GAACAATGATGAACGTTTGG+TGG 0.561740 4_1:+60943124 Msa0561420:CDS
AGTAAAGCATTGCAAAAGAA+GGG 0.562152 4_1:+60945021 Msa0561420:three_prime_UTR
CAATTAGAGATGTTCTTGCA+TGG 0.562414 4_1:-60950739 None:intergenic
ATCAGTTTCCAACACAGAGA+TGG 0.563919 4_1:+60950666 Msa0561420:three_prime_UTR
TATCTGGTCTGTTTAGATGG+TGG 0.565257 4_1:-60945747 None:intergenic
CGAATTAAGCTCCTCAGTAA+GGG 0.568634 4_1:-60943033 None:intergenic
CAAAAGGATTAAATTCAGCT+AGG 0.570834 4_1:+60945647 Msa0561420:three_prime_UTR
GGAGAAACTGCGTAATGAGT+TGG 0.571012 4_1:+60942944 Msa0561420:CDS
ATATATCTAACACTGGAGCT+GGG 0.575756 4_1:+60948093 Msa0561420:three_prime_UTR
AAGAAAACCAGGATCTTCAA+AGG 0.577026 4_1:+60943342 Msa0561420:CDS
AGATTTAATGCATAAACAGA+AGG 0.577360 4_1:+60950695 Msa0561420:three_prime_UTR
CATACCTGTGTTAGGCCACA+AGG 0.577489 4_1:-60949355 None:intergenic
AGACGCAGCATAAATGGTAT+GGG 0.579304 4_1:-60949302 None:intergenic
AAACCAGGATCTTCAAAGGA+AGG 0.581100 4_1:+60943346 Msa0561420:CDS
TCCCTTGGTACTCAAAGTTG+TGG 0.585289 4_1:-60945684 None:intergenic
GTCTTTGGGTTCACTCAGTG+AGG 0.586471 4_1:-60941242 None:intergenic
GTCATGATTCTTGAAATGGT+TGG 0.587756 4_1:-60949242 None:intergenic
TCACAGCCATCTTCCATTGA+CGG 0.589410 4_1:+60941585 Msa0561420:CDS
GATGTATATATGGCTTGCAA+AGG 0.591249 4_1:+60943740 Msa0561420:CDS
TAATAATAATTCCACACCCT+CGG 0.593918 4_1:+60941692 Msa0561420:CDS
AATGAATTCACCTTAGCCAC+TGG 0.594191 4_1:-60943935 None:intergenic
TACTTAAAGTCTGTGACTAG+AGG 0.596902 4_1:+60950580 Msa0561420:three_prime_UTR
CCACAAGGTTCAAAGATCGA+TGG 0.598033 4_1:-60949340 None:intergenic
TAACGACTTAGAGATGAGGT+TGG 0.600003 4_1:+60942851 Msa0561420:CDS
AATCCATTCCGAAACTGTGA+AGG 0.601972 4_1:-60949929 None:intergenic
TGCAGCAGAGATGGCACCAG+TGG 0.603229 4_1:+60943919 Msa0561420:three_prime_UTR
ACAGTGCAAATGATCTTCAA+GGG 0.603538 4_1:+60946883 Msa0561420:three_prime_UTR
AGAAAGCAAGAGAAAGACGC+TGG 0.604545 4_1:+60943574 Msa0561420:CDS
AACCAGTGGAAGATATGCCG+TGG 0.606256 4_1:+60943600 Msa0561420:CDS
CAAGTTGCTTCCAACTCTCA+GGG 0.608146 4_1:-60950495 None:intergenic
TGAACCTTGTGGCCTAACAC+AGG 0.608845 4_1:+60949351 Msa0561420:three_prime_UTR
GCCACAACTTTGAGTACCAA+GGG 0.609655 4_1:+60945683 Msa0561420:three_prime_UTR
TATCAGGCACTACAATTGGA+CGG 0.609853 4_1:-60941668 None:intergenic
TGGAGAGCACATTACGCGGT+GGG 0.609956 4_1:-60941396 None:intergenic
TGGGGAACGAGAAAGAGGAC+AGG 0.611198 4_1:-60941277 None:intergenic
GTCTGTGACTAGAGGAAGAG+CGG 0.614440 4_1:+60950588 Msa0561420:three_prime_UTR
ATAGACGTTAGCTTCTTCAA+GGG 0.614963 4_1:-60943387 None:intergenic
TAAGCTCCTCAGTAAGGGAA+CGG 0.616366 4_1:-60943028 None:intergenic
TTTCTGCCGCATCCCGCATG+GGG 0.616993 4_1:-60941210 None:intergenic
TATAGTGCTTGAAGAAAACC+AGG 0.617056 4_1:+60943331 Msa0561420:CDS
GGCTTACATCGTCTGCAACA+AGG 0.618089 4_1:+60943798 Msa0561420:CDS
ATTTGTGAATGCTGATGAGA+AGG 0.621507 4_1:+60949955 Msa0561420:three_prime_UTR
TGATAGAGTCAATTCTGTCA+AGG 0.625322 4_1:+60945792 Msa0561420:three_prime_UTR
AAACAGACCAGATAGAATGC+AGG 0.626984 4_1:+60945756 Msa0561420:three_prime_UTR
CTTGCATTCAACTCTAAGTG+TGG 0.631108 4_1:-60943237 None:intergenic
GCTCAATGAAATAAACAGGA+AGG 0.632993 4_1:-60945352 None:intergenic
TGCCACAACTTTGAGTACCA+AGG 0.639727 4_1:+60945682 Msa0561420:three_prime_UTR
GAAGAAACTCAAGTGCTACA+CGG 0.642151 4_1:-60945454 None:intergenic
ACATGCAATATATCTAACAC+TGG 0.642390 4_1:+60948086 Msa0561420:three_prime_UTR
GGGTAGAGAGGGTTGAATGG+AGG 0.648233 4_1:-60946776 None:intergenic
ACGCATGTTGAACTCATGGA+GGG 0.650060 4_1:+60942915 Msa0561420:CDS
AAAGACGCTGGATGAACCAG+TGG 0.651059 4_1:+60943586 Msa0561420:CDS
AAGAACTTATCAGGATGATG+GGG 0.657540 4_1:-60945374 None:intergenic
TTCTATGGCATTCTTCAGAG+AGG 0.658220 4_1:-60943072 None:intergenic
ATGGAGAGCACATTACGCGG+TGG 0.659091 4_1:-60941397 None:intergenic
AATATGTCAACAGTGTACAA+AGG 0.659693 4_1:+60950942 Msa0561420:three_prime_UTR
GTGTGCTGCAATTTGAGCAG+CGG 0.660001 4_1:+60941353 Msa0561420:CDS
GCTTCAGAGTTGGAATCATG+TGG 0.661516 4_1:+60945715 Msa0561420:three_prime_UTR
AATTGACTCCAGAATTCCCA+CGG 0.662373 4_1:-60943617 None:intergenic
AGAAAGAGGACAGGACACAC+AGG 0.663852 4_1:-60941268 None:intergenic
GACGCATGTTGAACTCATGG+AGG 0.664602 4_1:+60942914 Msa0561420:CDS
CAGGCTGAACAGTTGTCTGG+TGG 0.665061 4_1:+60942591 Msa0561420:CDS
AAGTTAACGACTTAGAGATG+AGG 0.665068 4_1:+60942847 Msa0561420:CDS
TATTAATAAATATCCCCATG+CGG 0.667586 4_1:+60941197 Msa0561420:five_prime_UTR
ACCAGTGGAAGATATGCCGT+GGG 0.676148 4_1:+60943601 Msa0561420:CDS
TGGGAAGTACGATTTCAACA+AGG 0.682155 4_1:-60945047 None:intergenic
ATTGTTGCTAGATAAAGCAA+CGG 0.685275 4_1:+60943289 Msa0561420:CDS
CGCCCAAGAAGTGAGAACTG+TGG 0.687875 4_1:+60945944 Msa0561420:three_prime_UTR
CCAAGAAGTGAGAACTGTGG+AGG 0.689930 4_1:+60945947 Msa0561420:three_prime_UTR
TAGGATCCGTTCCCTTACTG+AGG 0.694684 4_1:+60943022 Msa0561420:CDS
CAGCCATCTTCCATTGACGG+AGG 0.700118 4_1:+60941588 Msa0561420:CDS
AGACTACTTTAAATGTGACG+TGG 0.701483 4_1:+60950775 Msa0561420:three_prime_UTR
TGCATGCAATATGACCGCGT+TGG 0.706322 4_1:+60945078 Msa0561420:three_prime_UTR
GAAATGGAGAGCACATTACG+CGG 0.706474 4_1:-60941400 None:intergenic
TATCTAACACTGGAGCTGGG+AGG 0.740873 4_1:+60948096 Msa0561420:three_prime_UTR
TCTGAATTGATCCTTCAATG+GGG 0.741333 4_1:-60941295 None:intergenic
TAAGGTACCTGAGAATACGG+TGG 0.758925 4_1:-60941445 None:intergenic
GGTTGGCTGAGACTGATGCG+CGG 0.781736 4_1:+60942868 Msa0561420:CDS
ATACTCTTAAATCACCAACG+CGG 0.863183 4_1:-60945092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATAAATAAATTGCA+AGG - chr4_1:60941734-60941753 None:intergenic 10.0%
!! ATAATTGAATAATTAGTTAA+TGG - chr4_1:60942540-60942559 None:intergenic 10.0%
!! TAATTATTCAATTATGAAAT+AGG + chr4_1:60942545-60942564 Msa0561420:intron 10.0%
!!! ATTTTTGAAATCTTTTTTTT+AGG + chr4_1:60944226-60944245 Msa0561420:intron 10.0%
!! TATAAAATATTTATTCTTCT+AGG - chr4_1:60944753-60944772 None:intergenic 10.0%
!! AATTATTCAAAAATAAAATC+TGG + chr4_1:60945238-60945257 Msa0561420:three_prime_UTR 10.0%
!! ATTATTCAAAAATAAAATCT+GGG + chr4_1:60945239-60945258 Msa0561420:three_prime_UTR 10.0%
!!! TTATATAATTCTTATTTCAT+AGG + chr4_1:60946979-60946998 Msa0561420:intron 10.0%
!! AAATTAATTGAATAGAATAT+AGG - chr4_1:60947852-60947871 None:intergenic 10.0%
!! AAAGAAATAATTAATGTAAT+TGG + chr4_1:60948525-60948544 Msa0561420:intron 10.0%
!! GAAAACATATACATTTAAAA+AGG - chr4_1:60942693-60942712 None:intergenic 15.0%
!! TTGTTCTAATAGTAAAAAAA+GGG + chr4_1:60944312-60944331 Msa0561420:intron 15.0%
!! TTAAACATCATCATTATATT+GGG - chr4_1:60944554-60944573 None:intergenic 15.0%
!! ATCGTTATTTAATTAAGATT+AGG + chr4_1:60944609-60944628 Msa0561420:intron 15.0%
!! GTTTAGTATTAGTATAAATA+AGG + chr4_1:60944633-60944652 Msa0561420:intron 15.0%
!! ATATTGCATAAATGATATAT+CGG - chr4_1:60944687-60944706 None:intergenic 15.0%
!!! AATATTTTATAACTTTTGCA+TGG + chr4_1:60944762-60944781 Msa0561420:intron 15.0%
!! AAGAATTATATAATTACCAA+TGG - chr4_1:60946972-60946991 None:intergenic 15.0%
!!! TATAGGAACTTATAATATTT+TGG - chr4_1:60947835-60947854 None:intergenic 15.0%
!! AAGAAAAAAAAATCTCAAAA+GGG + chr4_1:60948576-60948595 Msa0561420:intron 15.0%
!! AATAATGATACTAAAAAAAC+TGG + chr4_1:60948738-60948757 Msa0561420:intron 15.0%
!!! AGCATTTTAAAATATAACTA+AGG + chr4_1:60948818-60948837 Msa0561420:intron 15.0%
!!! ACAGAAATAATTAGTTTTAT+TGG - chr4_1:60948854-60948873 None:intergenic 15.0%
!!! AAGTAAGAGTTTATTTTTTT+TGG - chr4_1:60949069-60949088 None:intergenic 15.0%
!!! TGAGATATTTTTTAATGTTT+TGG + chr4_1:60949109-60949128 Msa0561420:intron 15.0%
!! AATATGAAAAGCTTAAATTA+AGG + chr4_1:60949685-60949704 Msa0561420:intron 15.0%
!!! TTTCATAAGTTATTTCAGTA+TGG - chr4_1:60941984-60942003 None:intergenic 20.0%
!!! ACTATTTTGATTAGATATCT+TGG - chr4_1:60942045-60942064 None:intergenic 20.0%
!!! TCTACAATAAATCTAAAACA+TGG - chr4_1:60942231-60942250 None:intergenic 20.0%
!!! ATTATTCTGATTTTGTAGAA+TGG + chr4_1:60942460-60942479 Msa0561420:intron 20.0%
!!! CTGTATTTTAAATGATTCTA+TGG - chr4_1:60943090-60943109 None:intergenic 20.0%
!! TGTTTATAACCATTACAAAT+GGG + chr4_1:60944287-60944306 Msa0561420:intron 20.0%
!! GTTGTTCTAATAGTAAAAAA+AGG + chr4_1:60944311-60944330 Msa0561420:intron 20.0%
!! CTTAAACATCATCATTATAT+TGG - chr4_1:60944555-60944574 None:intergenic 20.0%
!!! CAATATAATGATGATGTTTA+AGG + chr4_1:60944553-60944572 Msa0561420:intron 20.0%
!! TATTGCATAAATGATATATC+GGG - chr4_1:60944686-60944705 None:intergenic 20.0%
!! TTTATTCTTCTAGGTATAAA+GGG - chr4_1:60944744-60944763 None:intergenic 20.0%
!! ATTTATTCTTCTAGGTATAA+AGG - chr4_1:60944745-60944764 None:intergenic 20.0%
!! ATAAAGACATTCAACTTAAA+TGG - chr4_1:60945298-60945317 None:intergenic 20.0%
!! AAGTTGAATGTCTTTATATA+TGG + chr4_1:60945301-60945320 Msa0561420:intron 20.0%
!! TTGGTAAAAAATGAATTAAG+AGG - chr4_1:60945545-60945564 None:intergenic 20.0%
!! TTGTTATATTTGCTCATAAA+TGG - chr4_1:60945846-60945865 None:intergenic 20.0%
!!! TATTAATAAAAGCACATGAA+TGG - chr4_1:60946398-60946417 None:intergenic 20.0%
!!! GCTTTGTTTCTAATAATAAA+TGG + chr4_1:60946460-60946479 Msa0561420:intron 20.0%
!! ATCTTATACAGAAAAAACAA+TGG + chr4_1:60946626-60946645 Msa0561420:intron 20.0%
!! ATATTATTGTACAAAATGCA+GGG + chr4_1:60946744-60946763 Msa0561420:intron 20.0%
!!! CAATTTGTTTGAAACAATAT+AGG + chr4_1:60947003-60947022 Msa0561420:intron 20.0%
!! TATAGGCTTAATTAATGATT+TGG + chr4_1:60947020-60947039 Msa0561420:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr4_1:60947319-60947338 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr4_1:60947318-60947337 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr4_1:60947080-60947099 Msa0561420:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr4_1:60947319-60947338 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr4_1:60947318-60947337 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr4_1:60947080-60947099 Msa0561420:intron 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG - chr4_1:60947290-60947309 None:intergenic 20.0%
!! CTTTATGTTATTAGAGTTAA+GGG - chr4_1:60947229-60947248 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG + chr4_1:60947290-60947309 Msa0561420:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr4_1:60947080-60947099 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr4_1:60947318-60947337 Msa0561420:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr4_1:60947319-60947338 Msa0561420:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr4_1:60947080-60947099 None:intergenic 20.0%
!! TTGTAACGTTAATAACTTAT+AGG + chr4_1:60947319-60947338 Msa0561420:intron 20.0%
!! AGCAAACTATAATATATTGT+TGG - chr4_1:60947454-60947473 None:intergenic 20.0%
!!! TATTGATTATCATTTTTCAG+AGG - chr4_1:60947774-60947793 None:intergenic 20.0%
!! ATATGTAAATTCCTAGAATT+TGG - chr4_1:60947809-60947828 None:intergenic 20.0%
!!! AATTTTTGTATGTTGCTTTA+AGG + chr4_1:60947867-60947886 Msa0561420:intron 20.0%
!! GATGACATCATTTATATATA+TGG + chr4_1:60947910-60947929 Msa0561420:intron 20.0%
!! TTTCTATTCTCTTATATGAT+AGG + chr4_1:60948014-60948033 Msa0561420:intron 20.0%
!! GAAAATGATGCAAAATAAAT+AGG + chr4_1:60948491-60948510 Msa0561420:intron 20.0%
!! GAAGAAAAAAAAATCTCAAA+AGG + chr4_1:60948575-60948594 Msa0561420:intron 20.0%
!!! TATTTCTGTATTTATAACTG+AGG + chr4_1:60948865-60948884 Msa0561420:intron 20.0%
!! ATTTCTGTATTTATAACTGA+GGG + chr4_1:60948866-60948885 Msa0561420:intron 20.0%
!!! TAAGAGTTTATTTTTTTTGG+TGG - chr4_1:60949066-60949085 None:intergenic 20.0%
!! ATGAATTAAGTTTGACAAAA+TGG - chr4_1:60949557-60949576 None:intergenic 20.0%
! TATTAATAAATATCCCCATG+CGG + chr4_1:60941197-60941216 Msa0561420:five_prime_UTR 25.0%
! ATCAATTCAGATTGAAAGAA+TGG + chr4_1:60941307-60941326 Msa0561420:exon 25.0%
! ATGCAAAATATTGATAGGTA+AGG - chr4_1:60941466-60941485 None:intergenic 25.0%
! TGCAAATGCAAAATATTGAT+AGG - chr4_1:60941471-60941490 None:intergenic 25.0%
! GTGGAATTATTATTAGTATC+AGG - chr4_1:60941687-60941706 None:intergenic 25.0%
! TACTCTTGAATTGAAAAATG+AGG - chr4_1:60941835-60941854 None:intergenic 25.0%
!! ATTTTATGAACTCAACTCAT+TGG - chr4_1:60941891-60941910 None:intergenic 25.0%
! AGTTGAGTTCATAAAATTAG+AGG + chr4_1:60941894-60941913 Msa0561420:intron 25.0%
! TTAAGCTGTTTATTCAAACT+AGG + chr4_1:60942147-60942166 Msa0561420:intron 25.0%
! TTTATTCAAACTAGGTCTTA+AGG + chr4_1:60942155-60942174 Msa0561420:intron 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr4_1:60942291-60942310 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr4_1:60942291-60942310 Msa0561420:intron 25.0%
! CATTTAGTTGTTTAAGTGTT+TGG - chr4_1:60942353-60942372 None:intergenic 25.0%
!!! TTTCTCTGCATTTTTTATCA+TGG - chr4_1:60942637-60942656 None:intergenic 25.0%
! AGAAAAGTAAGATATTCTTC+TGG + chr4_1:60942652-60942671 Msa0561420:intron 25.0%
!!! TTTTGATTCAAGGTCTTTTA+GGG - chr4_1:60943183-60943202 None:intergenic 25.0%
!!! ATATTGACAGTTTTGATTCA+AGG - chr4_1:60943193-60943212 None:intergenic 25.0%
! CAATTATTGCTTCTAATTGA+TGG + chr4_1:60943635-60943654 Msa0561420:CDS 25.0%
! GAGTATTAGTGATGTATATA+TGG + chr4_1:60943730-60943749 Msa0561420:CDS 25.0%
! ATATGAATCACATATAATCC+TGG - chr4_1:60943899-60943918 None:intergenic 25.0%
! GTTCATAACAATGCAAAATA+GGG - chr4_1:60943971-60943990 None:intergenic 25.0%
! AGTTCATAACAATGCAAAAT+AGG - chr4_1:60943972-60943991 None:intergenic 25.0%
! TGAAAGAATTAGAAACATCA+GGG - chr4_1:60944008-60944027 None:intergenic 25.0%
! TTGAAAGAATTAGAAACATC+AGG - chr4_1:60944009-60944028 None:intergenic 25.0%
! ACAGTAAAAGAACAGATTAT+AGG - chr4_1:60944050-60944069 None:intergenic 25.0%
! CTCTTTAGTATCATTTAAGT+GGG - chr4_1:60944084-60944103 None:intergenic 25.0%
! CTGTTTATAACCATTACAAA+TGG + chr4_1:60944286-60944305 Msa0561420:intron 25.0%
!! TGATGATGTTTAAGGAATTA+CGG + chr4_1:60944561-60944580 Msa0561420:intron 25.0%
! GATAATTTGATTATTCTTGC+AGG + chr4_1:60945179-60945198 Msa0561420:intron 25.0%
! TTCAAAAATAAAATCTGGGT+TGG + chr4_1:60945243-60945262 Msa0561420:three_prime_UTR 25.0%
! ATATCATTCATTGTCATGAT+TGG + chr4_1:60945498-60945517 Msa0561420:three_prime_UTR 25.0%
!! TAGCTGAATTTAATCCTTTT+GGG - chr4_1:60945648-60945667 None:intergenic 25.0%
! TCAACATAGATGCAATTATA+GGG - chr4_1:60946107-60946126 None:intergenic 25.0%
!!! AAATTCTTCGTTTTAGATGA+AGG - chr4_1:60946189-60946208 None:intergenic 25.0%
! AAAAGTCAAATAATGTGTCA+AGG - chr4_1:60946214-60946233 None:intergenic 25.0%
! ACATTGTTACACGAAATATA+AGG + chr4_1:60946525-60946544 Msa0561420:intron 25.0%
! CATTGTTACACGAAATATAA+GGG + chr4_1:60946526-60946545 Msa0561420:intron 25.0%
!!! ATGAATTTGCTATTGATCTT+TGG + chr4_1:60946591-60946610 Msa0561420:intron 25.0%
! CAATGTTTCAATTTGAAAAG+TGG + chr4_1:60946710-60946729 Msa0561420:intron 25.0%
! GATATTATTGTACAAAATGC+AGG + chr4_1:60946743-60946762 Msa0561420:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr4_1:60947410-60947429 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr4_1:60947409-60947428 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr4_1:60947051-60947070 Msa0561420:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr4_1:60947410-60947429 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr4_1:60947409-60947428 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr4_1:60947051-60947070 Msa0561420:intron 25.0%
! CGAAACCAAAAAATAAGTTA+AGG - chr4_1:60947289-60947308 None:intergenic 25.0%
! CCTTTATGTTATTAGAGTTA+AGG - chr4_1:60947230-60947249 None:intergenic 25.0%
! CCTTAACTCTAATAACATAA+AGG + chr4_1:60947227-60947246 Msa0561420:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG - chr4_1:60947202-60947221 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG + chr4_1:60947289-60947308 Msa0561420:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr4_1:60947051-60947070 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr4_1:60947409-60947428 Msa0561420:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr4_1:60947410-60947429 Msa0561420:intron 25.0%
!!! TGTTGGCTTAATTAATGATT+TGG - chr4_1:60947437-60947456 None:intergenic 25.0%
! TATTCTCTTATATGATAGGT+TGG + chr4_1:60948018-60948037 Msa0561420:intron 25.0%
!! TATTATACTCCACTTTAGAA+TGG + chr4_1:60948198-60948217 Msa0561420:intron 25.0%
! AGAAAGTCAACTTAGAATAA+AGG + chr4_1:60948243-60948262 Msa0561420:intron 25.0%
! ATGCAAAATAAATAGGAGTA+TGG + chr4_1:60948498-60948517 Msa0561420:intron 25.0%
! AATGTAATTGGAAATACCAA+AGG + chr4_1:60948537-60948556 Msa0561420:intron 25.0%
! ATGTAATTGGAAATACCAAA+GGG + chr4_1:60948538-60948557 Msa0561420:intron 25.0%
!! GATTTAGTTTAGAAATGTAC+TGG + chr4_1:60948786-60948805 Msa0561420:intron 25.0%
! AATCAGTTGACAGAAAATAT+GGG - chr4_1:60949183-60949202 None:intergenic 25.0%
! TAATCAGTTGACAGAAAATA+TGG - chr4_1:60949184-60949203 None:intergenic 25.0%
! TATGATCATCTTTATACAGT+TGG - chr4_1:60949645-60949664 None:intergenic 25.0%
!!! GTTCCTCTGTTTTTAAAATT+AGG + chr4_1:60950261-60950280 Msa0561420:intron 25.0%
! AGATTTAATGCATAAACAGA+AGG + chr4_1:60950695-60950714 Msa0561420:three_prime_UTR 25.0%
!! TTGACATATTCTAAAAACGT+AGG - chr4_1:60950932-60950951 None:intergenic 25.0%
ATTAATAAATATCCCCATGC+GGG + chr4_1:60941198-60941217 Msa0561420:five_prime_UTR 30.0%
ATCTGAATTGATCCTTCAAT+GGG - chr4_1:60941299-60941318 None:intergenic 30.0%
AATCTGAATTGATCCTTCAA+TGG - chr4_1:60941300-60941319 None:intergenic 30.0%
!!! ATTTTGCAAGATGATGGAAA+TGG - chr4_1:60941419-60941438 None:intergenic 30.0%
!! ATGATGATGATGTTTTCTTG+TGG - chr4_1:60941557-60941576 None:intergenic 30.0%
! TGATCAGATTTTGGATTAAG+AGG - chr4_1:60941624-60941643 None:intergenic 30.0%
TAATAATAATTCCACACCCT+CGG + chr4_1:60941692-60941711 Msa0561420:CDS 30.0%
TCATAAAATTAGAGGCTGTT+TGG + chr4_1:60941902-60941921 Msa0561420:intron 30.0%
! CACTTGTTTAAGTGTTTTTC+TGG - chr4_1:60942391-60942410 None:intergenic 30.0%
GTTCTTCAATATGATTCAAG+AGG + chr4_1:60942492-60942511 Msa0561420:intron 30.0%
GATTCAAGAGGTTAAAAAGT+TGG + chr4_1:60942504-60942523 Msa0561420:intron 30.0%
AAATAGGCCTTGAATGTAAA+CGG + chr4_1:60942561-60942580 Msa0561420:intron 30.0%
TGATTTATAAGAAGGATGTC+TGG - chr4_1:60942762-60942781 None:intergenic 30.0%
AGACATCCTTCTTATAAATC+AGG + chr4_1:60942761-60942780 Msa0561420:intron 30.0%
!!! GTTTTGATTCAAGGTCTTTT+AGG - chr4_1:60943184-60943203 None:intergenic 30.0%
ATCAAAACTGTCAATATCTC+CGG + chr4_1:60943196-60943215 Msa0561420:CDS 30.0%
ATGCAAGCATTTATCAGATA+AGG + chr4_1:60943253-60943272 Msa0561420:CDS 30.0%
ATTGTTGCTAGATAAAGCAA+CGG + chr4_1:60943289-60943308 Msa0561420:CDS 30.0%
! GTTTTCTTCAAGCACTATAA+CGG - chr4_1:60943330-60943349 None:intergenic 30.0%
!! TCAAAGGAAGGTTGATAAAT+TGG + chr4_1:60943358-60943377 Msa0561420:CDS 30.0%
GCAGCAAAAGATAAAACTAT+TGG + chr4_1:60943451-60943470 Msa0561420:CDS 30.0%
! TATCTTCATCTGATTTTTGC+AGG - chr4_1:60943484-60943503 None:intergenic 30.0%
! TATTGCTTCTAATTGATGGT+TGG + chr4_1:60943639-60943658 Msa0561420:CDS 30.0%
GGACTAAAGAGAAAAAGTAA+GGG - chr4_1:60943878-60943897 None:intergenic 30.0%
TGGACTAAAGAGAAAAAGTA+AGG - chr4_1:60943879-60943898 None:intergenic 30.0%
!!! TTACTTTTTCTCTTTAGTCC+AGG + chr4_1:60943878-60943897 Msa0561420:three_prime_UTR 30.0%
AACAATGCAAAATAGGGATA+AGG - chr4_1:60943965-60943984 None:intergenic 30.0%
AAGAACAGATTATAGGTGAA+GGG - chr4_1:60944043-60944062 None:intergenic 30.0%
AAAGAACAGATTATAGGTGA+AGG - chr4_1:60944044-60944063 None:intergenic 30.0%
CCTCTTTAGTATCATTTAAG+TGG - chr4_1:60944085-60944104 None:intergenic 30.0%
CCACTTAAATGATACTAAAG+AGG + chr4_1:60944082-60944101 Msa0561420:intron 30.0%
AGCAACTTACTCTGTAAATA+AGG + chr4_1:60944114-60944133 Msa0561420:intron 30.0%
GCAACTTACTCTGTAAATAA+GGG + chr4_1:60944115-60944134 Msa0561420:intron 30.0%
CAACTTACTCTGTAAATAAG+GGG + chr4_1:60944116-60944135 Msa0561420:intron 30.0%
AACTTACTCTGTAAATAAGG+GGG + chr4_1:60944117-60944136 Msa0561420:intron 30.0%
TTTCAGACATCCTTAAAACA+CGG + chr4_1:60944172-60944191 Msa0561420:intron 30.0%
TTTAGGAAATAAGTAGCATG+TGG + chr4_1:60944243-60944262 Msa0561420:intron 30.0%
TTACTATTAGAACAACTGAG+GGG - chr4_1:60944507-60944526 None:intergenic 30.0%
GTTACTATTAGAACAACTGA+GGG - chr4_1:60944508-60944527 None:intergenic 30.0%
TGTTACTATTAGAACAACTG+AGG - chr4_1:60944509-60944528 None:intergenic 30.0%
! ATAGTAACATCCCAACTTTT+TGG + chr4_1:60944520-60944539 Msa0561420:intron 30.0%
AACATCATCATTATATTGGG+TGG - chr4_1:60944551-60944570 None:intergenic 30.0%
AATGATGACAGAACATATCA+TGG - chr4_1:60944808-60944827 None:intergenic 30.0%
!! AAGTAAAGCATTGCAAAAGA+AGG + chr4_1:60945020-60945039 Msa0561420:three_prime_UTR 30.0%
!! AGTAAAGCATTGCAAAAGAA+GGG + chr4_1:60945021-60945040 Msa0561420:three_prime_UTR 30.0%
TATTGCATGCAGTCATATTT+GGG - chr4_1:60945069-60945088 None:intergenic 30.0%
ATATTGCATGCAGTCATATT+TGG - chr4_1:60945070-60945089 None:intergenic 30.0%
AGATGTTGAGTATTAGTGTT+TGG + chr4_1:60945139-60945158 Msa0561420:intron 30.0%
GTAATAGAGTCATACTTTGA+TGG + chr4_1:60945213-60945232 Msa0561420:three_prime_UTR 30.0%
TAACTTCACTTTACTTATGC+AGG + chr4_1:60945329-60945348 Msa0561420:intron 30.0%
AAAGAACTTATCAGGATGAT+GGG - chr4_1:60945378-60945397 None:intergenic 30.0%
AAAAGAACTTATCAGGATGA+TGG - chr4_1:60945379-60945398 None:intergenic 30.0%
! ATCATCCTGATAAGTTCTTT+TGG + chr4_1:60945378-60945397 Msa0561420:three_prime_UTR 30.0%
TCATGACAATGAATGATATC+TGG - chr4_1:60945497-60945516 None:intergenic 30.0%
TTACTCAAAGAGCAAAAGTT+TGG - chr4_1:60945564-60945583 None:intergenic 30.0%
! AGCTGAATTTAATCCTTTTG+GGG - chr4_1:60945647-60945666 None:intergenic 30.0%
! CTAGCTGAATTTAATCCTTT+TGG - chr4_1:60945649-60945668 None:intergenic 30.0%
CAAAAGGATTAAATTCAGCT+AGG + chr4_1:60945647-60945666 Msa0561420:three_prime_UTR 30.0%
! AGTTTACCTTCCAATGTTTT+AGG + chr4_1:60945875-60945894 Msa0561420:intron 30.0%
! GTTTACCTTCCAATGTTTTA+GGG + chr4_1:60945876-60945895 Msa0561420:intron 30.0%
! TGTGCATATTAGGTATTTTC+TGG + chr4_1:60945990-60946009 Msa0561420:intron 30.0%
! GTTATTCAAAGTTGATCTTG+TGG - chr4_1:60946078-60946097 None:intergenic 30.0%
GTCAACATAGATGCAATTAT+AGG - chr4_1:60946108-60946127 None:intergenic 30.0%
!! TTTAGATGAAGGTATCAGAA+TGG - chr4_1:60946178-60946197 None:intergenic 30.0%
GCATCAAATTCTTCAACATT+TGG - chr4_1:60946249-60946268 None:intergenic 30.0%
TGGTTCTTAAGAATAGACAA+AGG + chr4_1:60946438-60946457 Msa0561420:intron 30.0%
TTTCGTGTAACAATGTCAAA+TGG - chr4_1:60946521-60946540 None:intergenic 30.0%
GATCAATAGCAAATTCATTC+CGG - chr4_1:60946589-60946608 None:intergenic 30.0%
!! ATGGTATTGACACTGATATA+TGG + chr4_1:60946826-60946845 Msa0561420:three_prime_UTR 30.0%
GAAACCAAAAAGCAAGTTAA+GGG - chr4_1:60947167-60947186 None:intergenic 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr4_1:60947191-60947210 Msa0561420:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG - chr4_1:60947191-60947210 None:intergenic 30.0%
!!! GTTATGTGTTGGTTACATTT+TGG - chr4_1:60947346-60947365 None:intergenic 30.0%
TGTAACCAACACATAACTTA+AGG + chr4_1:60947349-60947368 Msa0561420:intron 30.0%
GTAACCAACACATAACTTAA+GGG + chr4_1:60947350-60947369 Msa0561420:intron 30.0%
ATCTGAATCTCAAGTCTAAT+AGG - chr4_1:60947606-60947625 None:intergenic 30.0%
ATTAGACTTGAGATTCAGAT+TGG + chr4_1:60947606-60947625 Msa0561420:intron 30.0%
!!! ACACATTCACAGACTTTTTT+TGG - chr4_1:60947715-60947734 None:intergenic 30.0%
TAAATTCCTAGAATTTGGAC+TGG - chr4_1:60947804-60947823 None:intergenic 30.0%
! ATAAGATGAACACCTTTTTG+TGG - chr4_1:60948063-60948082 None:intergenic 30.0%
ACATGCAATATATCTAACAC+TGG + chr4_1:60948086-60948105 Msa0561420:three_prime_UTR 30.0%
TAAGGAAAGAAAATATGACC+TGG - chr4_1:60948161-60948180 None:intergenic 30.0%
TCCTTATAGCTGAAATTTAG+TGG + chr4_1:60948175-60948194 Msa0561420:intron 30.0%
ACCACTAAATTTCAGCTATA+AGG - chr4_1:60948179-60948198 None:intergenic 30.0%
AAGTCAACTTAGAATAAAGG+TGG + chr4_1:60948246-60948265 Msa0561420:intron 30.0%
! TTTCTTAATTCCCGTGATTT+TGG - chr4_1:60948331-60948350 None:intergenic 30.0%
! CAAAATAAATAGGAGTATGG+TGG + chr4_1:60948501-60948520 Msa0561420:intron 30.0%
TGTAATTGGAAATACCAAAG+GGG + chr4_1:60948539-60948558 Msa0561420:intron 30.0%
! AAGGGTCTTATAATTAGAGA+CGG + chr4_1:60948594-60948613 Msa0561420:intron 30.0%
CTGTTACTATATATAACCAG+AGG + chr4_1:60948689-60948708 Msa0561420:intron 30.0%
CTAAACTAAATCAGTCAGAA+AGG - chr4_1:60948778-60948797 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr4_1:60949018-60949037 Msa0561420:intron 30.0%
!!! GAGTTTATTTTTTTTGGTGG+TGG - chr4_1:60949063-60949082 None:intergenic 30.0%
AGAAAATATGGGGAATGAAT+GGG - chr4_1:60949172-60949191 None:intergenic 30.0%
ATCAGTTGACAGAAAATATG+GGG - chr4_1:60949182-60949201 None:intergenic 30.0%
! ATTCTCTAGAGAGAATTTGA+AGG + chr4_1:60949214-60949233 Msa0561420:intron 30.0%
TGTTGTCATGATTCTTGAAA+TGG - chr4_1:60949249-60949268 None:intergenic 30.0%
TCAAGAATCATGACAACATA+AGG + chr4_1:60949251-60949270 Msa0561420:three_prime_UTR 30.0%
AAACATGTATCACGTAAGAA+TGG - chr4_1:60949448-60949467 None:intergenic 30.0%
! CACGTAATTTTACTTCATTC+AGG - chr4_1:60949613-60949632 None:intergenic 30.0%
TCATCTGCAGGAAATATATT+AGG - chr4_1:60949750-60949769 None:intergenic 30.0%
CAGATGATTTCAATGAGATA+TGG + chr4_1:60949763-60949782 Msa0561420:intron 30.0%
ATACAATACCTTCACAGTTT+CGG + chr4_1:60949921-60949940 Msa0561420:three_prime_UTR 30.0%
TTTCATGATAGAGTAGGTAA+TGG + chr4_1:60950031-60950050 Msa0561420:intron 30.0%
TTCATGATAGAGTAGGTAAT+GGG + chr4_1:60950032-60950051 Msa0561420:intron 30.0%
CATAGACTAAAGTTGCAATT+AGG - chr4_1:60950191-60950210 None:intergenic 30.0%
! TAAAAACAGAGGAACTTGTT+TGG - chr4_1:60950256-60950275 None:intergenic 30.0%
!! GTGCCTAATTTTAAAAACAG+AGG - chr4_1:60950267-60950286 None:intergenic 30.0%
TTGATAGATGAGAATGTTGA+AGG - chr4_1:60950369-60950388 None:intergenic 30.0%
!! TTTTATGCTGTTTATTGCTC+TGG + chr4_1:60950398-60950417 Msa0561420:intron 30.0%
!! TCTAATGACACAATTTTGAC+AGG + chr4_1:60950426-60950445 Msa0561420:intron 30.0%
!! CTAATGACACAATTTTGACA+GGG + chr4_1:60950427-60950446 Msa0561420:intron 30.0%
TAAGATTGAAATGATAGCAC+AGG - chr4_1:60950647-60950666 None:intergenic 30.0%
! ATTCTAAAAACGTAGGAAAG+TGG - chr4_1:60950925-60950944 None:intergenic 30.0%
AATATGTCAACAGTGTACAA+AGG + chr4_1:60950942-60950961 Msa0561420:three_prime_UTR 30.0%
GTTGTAACCATTTACATGTA+TGG - chr4_1:60950968-60950987 None:intergenic 30.0%
TCTGAATTGATCCTTCAATG+GGG - chr4_1:60941298-60941317 None:intergenic 35.0%
! GAATCATCGTGATCAGATTT+TGG - chr4_1:60941633-60941652 None:intergenic 35.0%
TTAGTATCAGGCACTACAAT+TGG - chr4_1:60941675-60941694 None:intergenic 35.0%
! AAATTGCAAGGTGAGTTGAA+GGG - chr4_1:60941722-60941741 None:intergenic 35.0%
! TAAATTGCAAGGTGAGTTGA+AGG - chr4_1:60941723-60941742 None:intergenic 35.0%
TAGATATCTTGGAGAGCTTA+TGG - chr4_1:60942034-60942053 None:intergenic 35.0%
TAATGACGAAAGTCTTCAGA+AGG - chr4_1:60942444-60942463 None:intergenic 35.0%
CTCTAGCCTGATTTATAAGA+AGG - chr4_1:60942770-60942789 None:intergenic 35.0%
TGCACTTGAAGATCTTCAAA+AGG + chr4_1:60942794-60942813 Msa0561420:CDS 35.0%
AAGTTAACGACTTAGAGATG+AGG + chr4_1:60942847-60942866 Msa0561420:CDS 35.0%
! TTCTTCAGTACTACCCTTTT+CGG - chr4_1:60942970-60942989 None:intergenic 35.0%
TGCATGAGCTTCATAATGAT+AGG + chr4_1:60943003-60943022 Msa0561420:CDS 35.0%
CAAGAACAATGATGAACGTT+TGG + chr4_1:60943121-60943140 Msa0561420:CDS 35.0%
TATAGTGCTTGAAGAAAACC+AGG + chr4_1:60943331-60943350 Msa0561420:CDS 35.0%
AAGAAAACCAGGATCTTCAA+AGG + chr4_1:60943342-60943361 Msa0561420:CDS 35.0%
! ATAGACGTTAGCTTCTTCAA+GGG - chr4_1:60943390-60943409 None:intergenic 35.0%
! TATAGACGTTAGCTTCTTCA+AGG - chr4_1:60943391-60943410 None:intergenic 35.0%
!! TGCAAAGCTTTTGAGAGAAA+AGG + chr4_1:60943691-60943710 Msa0561420:CDS 35.0%
! GATGTATATATGGCTTGCAA+AGG + chr4_1:60943740-60943759 Msa0561420:CDS 35.0%
CAAAGGAAAAAATGAAGACG+AGG + chr4_1:60943757-60943776 Msa0561420:CDS 35.0%
AGGCTATATCTGCATTTCTT+GGG + chr4_1:60943777-60943796 Msa0561420:CDS 35.0%
GTAAGGGATGCATAAGATAA+TGG - chr4_1:60943862-60943881 None:intergenic 35.0%
TTCAATTCAAAACTCACACC+TGG - chr4_1:60944146-60944165 None:intergenic 35.0%
! ATACATGAGACCGTGTTTTA+AGG - chr4_1:60944185-60944204 None:intergenic 35.0%
GATTTCAAAAATTCGCACGA+GGG - chr4_1:60944218-60944237 None:intergenic 35.0%
AGATTTCAAAAATTCGCACG+AGG - chr4_1:60944219-60944238 None:intergenic 35.0%
AGAACAACTCCCATTTGTAA+TGG - chr4_1:60944299-60944318 None:intergenic 35.0%
ATAGTAAAAAAAGGGCAACC+CGG + chr4_1:60944320-60944339 Msa0561420:intron 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr4_1:60944412-60944431 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr4_1:60944411-60944430 Msa0561420:intron 35.0%
ATTCTTCTAGGTATAAAGGG+AGG - chr4_1:60944741-60944760 None:intergenic 35.0%
CTTGGAAGAACAATATGGAA+AGG - chr4_1:60944886-60944905 None:intergenic 35.0%
CTTTCCATATTGTTCTTCCA+AGG + chr4_1:60944884-60944903 Msa0561420:intron 35.0%
! GATTGAGTTGTTTCCATAAC+AGG + chr4_1:60944966-60944985 Msa0561420:intron 35.0%
ATACTCTTAAATCACCAACG+CGG - chr4_1:60945095-60945114 None:intergenic 35.0%
TTGATTATTCTTGCAGGCTT+TGG + chr4_1:60945185-60945204 Msa0561420:intron 35.0%
GCTCAATGAAATAAACAGGA+AGG - chr4_1:60945355-60945374 None:intergenic 35.0%
AAGAACTTATCAGGATGATG+GGG - chr4_1:60945377-60945396 None:intergenic 35.0%
!! TTTTGGAGAGGAGACTTTTA+TGG + chr4_1:60945395-60945414 Msa0561420:three_prime_UTR 35.0%
GCATATATGTCCCAGTATAA+AGG - chr4_1:60945625-60945644 None:intergenic 35.0%
TTCTATCTGGTCTGTTTAGA+TGG - chr4_1:60945753-60945772 None:intergenic 35.0%
TGATAGAGTCAATTCTGTCA+AGG + chr4_1:60945792-60945811 Msa0561420:three_prime_UTR 35.0%
! CTATGTTGACTAGATTGTTC+CGG + chr4_1:60946118-60946137 Msa0561420:intron 35.0%
! TATGTTGACTAGATTGTTCC+GGG + chr4_1:60946119-60946138 Msa0561420:intron 35.0%
TATATCCTACAATCCTTTCC+CGG - chr4_1:60946140-60946159 None:intergenic 35.0%
!! GCATAAGCTTGTTGAAGATT+TGG + chr4_1:60946418-60946437 Msa0561420:intron 35.0%
!! TGTCGATTTGCACATCAAAT+TGG - chr4_1:60946562-60946581 None:intergenic 35.0%
TTTGATGTGCAAATCGACAT+AGG + chr4_1:60946563-60946582 Msa0561420:intron 35.0%
TTATTGTACAAAATGCAGGG+AGG + chr4_1:60946747-60946766 Msa0561420:intron 35.0%
! AAGAACACCGATGAACTTTT+TGG - chr4_1:60946805-60946824 None:intergenic 35.0%
! AAGTTCATCGGTGTTCTTAA+TGG + chr4_1:60946807-60946826 Msa0561420:three_prime_UTR 35.0%
TACAGTGCAAATGATCTTCA+AGG + chr4_1:60946882-60946901 Msa0561420:three_prime_UTR 35.0%
ACAGTGCAAATGATCTTCAA+GGG + chr4_1:60946883-60946902 Msa0561420:three_prime_UTR 35.0%
AAGACCTAGATTCTTTCTCA+AGG - chr4_1:60946928-60946947 None:intergenic 35.0%
TTTCTTCTGCAGATGTTAAG+AGG + chr4_1:60946946-60946965 Msa0561420:three_prime_UTR 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr4_1:60947040-60947059 Msa0561420:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr4_1:60947040-60947059 Msa0561420:intron 35.0%
CGAAACCAAAAAGCAAGTTA+AGG - chr4_1:60947168-60947187 None:intergenic 35.0%
!!! CTTGCTTTTTGGTTTCGTTT+TGG + chr4_1:60947171-60947190 Msa0561420:intron 35.0%
AATAACATAAAGGACCAGAG+TGG + chr4_1:60947237-60947256 Msa0561420:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr4_1:60947040-60947059 None:intergenic 35.0%
!! TGCTTTTTGGTAGCATTTTG+GGG - chr4_1:60947563-60947582 None:intergenic 35.0%
!!! CTGCTTTTTGGTAGCATTTT+GGG - chr4_1:60947564-60947583 None:intergenic 35.0%
!!! TCTGCTTTTTGGTAGCATTT+TGG - chr4_1:60947565-60947584 None:intergenic 35.0%
!! TTGGTTCTAGACAAACCATA+TGG + chr4_1:60947625-60947644 Msa0561420:intron 35.0%
!! TTTTGTCTGAAACTTTCCGA+TGG + chr4_1:60947667-60947686 Msa0561420:intron 35.0%
! ACAAGATTGGTTCCACAAAA+AGG + chr4_1:60948048-60948067 Msa0561420:three_prime_UTR 35.0%
AATATATCTAACACTGGAGC+TGG + chr4_1:60948092-60948111 Msa0561420:three_prime_UTR 35.0%
ATATATCTAACACTGGAGCT+GGG + chr4_1:60948093-60948112 Msa0561420:three_prime_UTR 35.0%
GAAAATATGACCTGGATATG+TGG - chr4_1:60948153-60948172 None:intergenic 35.0%
GCAAAAGGGTCCAATATTTA+GGG - chr4_1:60948309-60948328 None:intergenic 35.0%
! ACCAAAGGGGTCTTATAAAA+AGG + chr4_1:60948552-60948571 Msa0561420:intron 35.0%
! CCAAAGGGGTCTTATAAAAA+GGG + chr4_1:60948553-60948572 Msa0561420:intron 35.0%
ACGGAAGTAGTAATTACCTA+GGG + chr4_1:60948613-60948632 Msa0561420:intron 35.0%
AGTAGTAATTACCTAGGGTA+TGG + chr4_1:60948618-60948637 Msa0561420:intron 35.0%
TCAAGAATAATCCATACCCT+AGG - chr4_1:60948632-60948651 None:intergenic 35.0%
CTATATATAACCAGAGGTCT+CGG + chr4_1:60948695-60948714 Msa0561420:intron 35.0%
AACTAAATCAGTCAGAAAGG+CGG - chr4_1:60948775-60948794 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr4_1:60949023-60949042 Msa0561420:intron 35.0%
!!! TTATTTTTTTTGGTGGTGGC+CGG - chr4_1:60949059-60949078 None:intergenic 35.0%
!! TTTTGGAAGTAGACTGTTGA+TGG + chr4_1:60949126-60949145 Msa0561420:intron 35.0%
CAGAAAATATGGGGAATGAA+TGG - chr4_1:60949173-60949192 None:intergenic 35.0%
GTCATGATTCTTGAAATGGT+TGG - chr4_1:60949245-60949264 None:intergenic 35.0%
TATCACGTAAGAATGGAACA+TGG - chr4_1:60949441-60949460 None:intergenic 35.0%
ATCTCATTGAAATCATCTGC+AGG - chr4_1:60949762-60949781 None:intergenic 35.0%
ATTTGTGAATGCTGATGAGA+AGG + chr4_1:60949955-60949974 Msa0561420:three_prime_UTR 35.0%
! CGTGTTTTTCATGATAGAGT+AGG + chr4_1:60950025-60950044 Msa0561420:intron 35.0%
TCATGATAGAGTAGGTAATG+GGG + chr4_1:60950033-60950052 Msa0561420:intron 35.0%
CAACTTTAGTCTATGTAGCT+TGG + chr4_1:60950196-60950215 Msa0561420:intron 35.0%
AGTCTATGTAGCTTGGATTA+TGG + chr4_1:60950203-60950222 Msa0561420:intron 35.0%
TTGCATTACGTATCTATAGC+AGG - chr4_1:60950307-60950326 None:intergenic 35.0%
TAAGGTAGGTTACGGAAAAT+AGG - chr4_1:60950342-60950361 None:intergenic 35.0%
AAGGTGAATAAGGTAGGTTA+CGG - chr4_1:60950350-60950369 None:intergenic 35.0%
ATGTTGAAGGTGAATAAGGT+AGG - chr4_1:60950356-60950375 None:intergenic 35.0%
GAGAATGTTGAAGGTGAATA+AGG - chr4_1:60950360-60950379 None:intergenic 35.0%
!! CAATTTTGACAGGGAATAGA+TGG + chr4_1:60950436-60950455 Msa0561420:intron 35.0%
!!! ACATGAACATCGATTTTAGC+TGG + chr4_1:60950527-60950546 Msa0561420:three_prime_UTR 35.0%
!!! CATGAACATCGATTTTAGCT+GGG + chr4_1:60950528-60950547 Msa0561420:three_prime_UTR 35.0%
TACTTAAAGTCTGTGACTAG+AGG + chr4_1:60950580-60950599 Msa0561420:three_prime_UTR 35.0%
CAATTAGAGATGTTCTTGCA+TGG - chr4_1:60950742-60950761 None:intergenic 35.0%
AGACTACTTTAAATGTGACG+TGG + chr4_1:60950775-60950794 Msa0561420:three_prime_UTR 35.0%
! AAGTGAGAAATGTTGCTTCA+TGG - chr4_1:60950830-60950849 None:intergenic 35.0%
!! GCAACATTTCTCACTTTTGA+TGG + chr4_1:60950834-60950853 Msa0561420:three_prime_UTR 35.0%
!!! TCTCACTTTTGATGGATTCT+AGG + chr4_1:60950842-60950861 Msa0561420:three_prime_UTR 35.0%
ACAAAGGCCATACATGTAAA+TGG + chr4_1:60950958-60950977 Msa0561420:three_prime_UTR 35.0%
! TGTCGCATTTTGCAAGATGA+TGG - chr4_1:60941425-60941444 None:intergenic 40.0%
! AGGTAAGGTACCTGAGAATA+CGG - chr4_1:60941451-60941470 None:intergenic 40.0%
TATCAGGCACTACAATTGGA+CGG - chr4_1:60941671-60941690 None:intergenic 40.0%
! AATTGCAAGGTGAGTTGAAG+GGG - chr4_1:60941721-60941740 None:intergenic 40.0%
GTTGCAAACATTGGAGACTT+AGG - chr4_1:60941762-60941781 None:intergenic 40.0%
GTCTCCAATGTTTGCAACTT+CGG + chr4_1:60941764-60941783 Msa0561420:intron 40.0%
CTATCCGAAGTTGCAAACAT+TGG - chr4_1:60941771-60941790 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr4_1:60942295-60942314 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr4_1:60942294-60942313 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr4_1:60942294-60942313 Msa0561420:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr4_1:60942295-60942314 Msa0561420:intron 40.0%
ACTTACTATGATACACCCTC+CGG - chr4_1:60942313-60942332 None:intergenic 40.0%
! TGCTTGTAGCGCTTTCTTTT+CGG - chr4_1:60942826-60942845 None:intergenic 40.0%
TAACGACTTAGAGATGAGGT+TGG + chr4_1:60942851-60942870 Msa0561420:CDS 40.0%
AAAGACGCATGTTGAACTCA+TGG + chr4_1:60942911-60942930 Msa0561420:CDS 40.0%
CGAATTAAGCTCCTCAGTAA+GGG - chr4_1:60943036-60943055 None:intergenic 40.0%
CCTTACTGAGGAGCTTAATT+CGG + chr4_1:60943034-60943053 Msa0561420:CDS 40.0%
TTCTATGGCATTCTTCAGAG+AGG - chr4_1:60943075-60943094 None:intergenic 40.0%
GAACAATGATGAACGTTTGG+TGG + chr4_1:60943124-60943143 Msa0561420:CDS 40.0%
! TGATGAACGTTTGGTGGTAT+TGG + chr4_1:60943130-60943149 Msa0561420:CDS 40.0%
! ACGTTTGGTGGTATTGGAAA+AGG + chr4_1:60943136-60943155 Msa0561420:CDS 40.0%
!!! GGAAAAGGAGCGCTTATTTT+TGG + chr4_1:60943151-60943170 Msa0561420:CDS 40.0%
GACAGTTCAGATACATCTTC+CGG - chr4_1:60943218-60943237 None:intergenic 40.0%
CTTGCATTCAACTCTAAGTG+TGG - chr4_1:60943240-60943259 None:intergenic 40.0%
AAACCAGGATCTTCAAAGGA+AGG + chr4_1:60943346-60943365 Msa0561420:CDS 40.0%
! AATTGACTCCAGAATTCCCA+CGG - chr4_1:60943620-60943639 None:intergenic 40.0%
!! AGCTTTTGAGAGAAAAGGTG+TGG + chr4_1:60943696-60943715 Msa0561420:CDS 40.0%
GAGGCTATATCTGCATTTCT+TGG + chr4_1:60943776-60943795 Msa0561420:CDS 40.0%
GATTCATATTGCAGCAGAGA+TGG + chr4_1:60943910-60943929 Msa0561420:three_prime_UTR 40.0%
AATGAATTCACCTTAGCCAC+TGG - chr4_1:60943938-60943957 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr4_1:60944386-60944405 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr4_1:60944417-60944436 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr4_1:60944418-60944437 None:intergenic 40.0%
GGTGGTATTGCCAAAAAGTT+GGG - chr4_1:60944533-60944552 None:intergenic 40.0%
CTAGGTATAAAGGGAGGAAA+AGG - chr4_1:60944735-60944754 None:intergenic 40.0%
!!! TCGCAGTGTTCTAGAGTTTT+GGG - chr4_1:60944843-60944862 None:intergenic 40.0%
!!! ATCGCAGTGTTCTAGAGTTT+TGG - chr4_1:60944844-60944863 None:intergenic 40.0%
CCATCCTTGGAAGAACAATA+TGG - chr4_1:60944891-60944910 None:intergenic 40.0%
CCATATTGTTCTTCCAAGGA+TGG + chr4_1:60944888-60944907 Msa0561420:intron 40.0%
! GAGTTGTTTCCATAACAGGT+TGG + chr4_1:60944970-60944989 Msa0561420:intron 40.0%
! TTGTTTCCATAACAGGTTGG+TGG + chr4_1:60944973-60944992 Msa0561420:intron 40.0%
! TGGGAAGTACGATTTCAACA+AGG - chr4_1:60945050-60945069 None:intergenic 40.0%
TGGGGCTCAATGAAATAAAC+AGG - chr4_1:60945359-60945378 None:intergenic 40.0%
CCTCTCCAAAAGAACTTATC+AGG - chr4_1:60945386-60945405 None:intergenic 40.0%
!! CCTGATAAGTTCTTTTGGAG+AGG + chr4_1:60945383-60945402 Msa0561420:three_prime_UTR 40.0%
GAAGAAACTCAAGTGCTACA+CGG - chr4_1:60945457-60945476 None:intergenic 40.0%
CTTGAGTTTCTTCTTCAAGC+TGG + chr4_1:60945464-60945483 Msa0561420:three_prime_UTR 40.0%
TATCTGGTCTGTTTAGATGG+TGG - chr4_1:60945750-60945769 None:intergenic 40.0%
AAACAGACCAGATAGAATGC+AGG + chr4_1:60945756-60945775 Msa0561420:three_prime_UTR 40.0%
!!! TACCTTCCAATGTTTTAGGG+TGG + chr4_1:60945879-60945898 Msa0561420:intron 40.0%
ACAACTCCACCCTAAAACAT+TGG - chr4_1:60945888-60945907 None:intergenic 40.0%
TTCTCGCTCTTGTGCATATT+AGG + chr4_1:60945980-60945999 Msa0561420:intron 40.0%
AAAGCAAGCAGCACTCATAA+CGG + chr4_1:60946050-60946069 Msa0561420:intron 40.0%
! CAGCAGAGTTTCTTTCAAGT+GGG + chr4_1:60946307-60946326 Msa0561420:intron 40.0%
TGCACATCAAATTGGACTTC+TGG - chr4_1:60946554-60946573 None:intergenic 40.0%
TACAAAATGCAGGGAGGTAA+AGG + chr4_1:60946753-60946772 Msa0561420:intron 40.0%
ACCCACTCCAAAAAGTTCAT+CGG + chr4_1:60946795-60946814 Msa0561420:three_prime_UTR 40.0%
!!! ACCGATGAACTTTTTGGAGT+GGG - chr4_1:60946799-60946818 None:intergenic 40.0%
TCAAGAAATGGATCAGTAGC+AGG - chr4_1:60946855-60946874 None:intergenic 40.0%
CTGTACTGGACTTCAAGAAA+TGG - chr4_1:60946867-60946886 None:intergenic 40.0%
GAAGATCATTTGCACTGTAC+TGG - chr4_1:60946881-60946900 None:intergenic 40.0%
TCAAGGGAAAGCAGAGAATA+AGG + chr4_1:60946899-60946918 Msa0561420:three_prime_UTR 40.0%
GAAGCCTTGAGAAAGAATCT+AGG + chr4_1:60946921-60946940 Msa0561420:three_prime_UTR 40.0%
!!! TGGTCCCTTAACTTGCTTTT+TGG + chr4_1:60947160-60947179 Msa0561420:intron 40.0%
TGGTCCCTTAAGTTATGTGT+TGG - chr4_1:60947357-60947376 None:intergenic 40.0%
!! GCTTTTTGGTAGCATTTTGG+GGG - chr4_1:60947562-60947581 None:intergenic 40.0%
!! TGCACACACATTCTGCTTTT+TGG - chr4_1:60947576-60947595 None:intergenic 40.0%
GCAGAATGTGTGTGCATATT+TGG + chr4_1:60947580-60947599 Msa0561420:intron 40.0%
! GTTCTAGACAAACCATATGG+AGG + chr4_1:60947628-60947647 Msa0561420:intron 40.0%
! TTTCCGATGGTAGTGAATAG+TGG + chr4_1:60947680-60947699 Msa0561420:intron 40.0%
AAGTCCTGCAAACTCTATCA+TGG - chr4_1:60947749-60947768 None:intergenic 40.0%
TTACCTCCAGTCCAAATTCT+AGG + chr4_1:60947795-60947814 Msa0561420:intron 40.0%
! ATTCCTAGAATTTGGACTGG+AGG - chr4_1:60947801-60947820 None:intergenic 40.0%
GGTCTCATTTGCTTCTTTGT+TGG + chr4_1:60947888-60947907 Msa0561420:intron 40.0%
! GGAGGTCAATTTGTTCTACT+TGG + chr4_1:60948114-60948133 Msa0561420:three_prime_UTR 40.0%
! TAGCTGACTCCATTCTAAAG+TGG - chr4_1:60948210-60948229 None:intergenic 40.0%
CTACCTCTGTCCCTAAATAT+TGG + chr4_1:60948296-60948315 Msa0561420:intron 40.0%
GGCAAAAGGGTCCAATATTT+AGG - chr4_1:60948310-60948329 None:intergenic 40.0%
!! TTCCCGTGATTTTGGCAAAA+GGG - chr4_1:60948323-60948342 None:intergenic 40.0%
!! ATTCCCGTGATTTTGGCAAA+AGG - chr4_1:60948324-60948343 None:intergenic 40.0%
! CCCTTTTTATAAGACCCCTT+TGG - chr4_1:60948556-60948575 None:intergenic 40.0%
GACGGAAGTAGTAATTACCT+AGG + chr4_1:60948612-60948631 Msa0561420:intron 40.0%
ACAATATTTACCGAGACCTC+TGG - chr4_1:60948708-60948727 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr4_1:60949024-60949043 Msa0561420:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr4_1:60949025-60949044 Msa0561420:intron 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG - chr4_1:60949058-60949077 None:intergenic 40.0%
AGACGCAGCATAAATGGTAT+GGG - chr4_1:60949305-60949324 None:intergenic 40.0%
!! GTGCAGAAAATGGATTTTGG+TGG - chr4_1:60949591-60949610 None:intergenic 40.0%
!! CAGGTGCAGAAAATGGATTT+TGG - chr4_1:60949594-60949613 None:intergenic 40.0%
CTTCATTCAGGTGCAGAAAA+TGG - chr4_1:60949601-60949620 None:intergenic 40.0%
! ATTTAGGCCACCAGTTTTTC+TGG - chr4_1:60949803-60949822 None:intergenic 40.0%
! GCTATGCTAACCTGTCATTT+AGG - chr4_1:60949819-60949838 None:intergenic 40.0%
ATACCTTCACAGTTTCGGAA+TGG + chr4_1:60949926-60949945 Msa0561420:three_prime_UTR 40.0%
AATCCATTCCGAAACTGTGA+AGG - chr4_1:60949932-60949951 None:intergenic 40.0%
! CTTTTCATCCCAGCTAAAGA+AGG - chr4_1:60950083-60950102 None:intergenic 40.0%
GAGATTAATTGCGCGTACTA+AGG - chr4_1:60950464-60950483 None:intergenic 40.0%
TACGCGCAATTAATCTCTTC+AGG + chr4_1:60950467-60950486 Msa0561420:three_prime_UTR 40.0%
ACGCGCAATTAATCTCTTCA+GGG + chr4_1:60950468-60950487 Msa0561420:three_prime_UTR 40.0%
! TTGGAAGCAACTTGTTCAGA+AGG + chr4_1:60950504-60950523 Msa0561420:three_prime_UTR 40.0%
TTCTTCAGCAGCACAATATG+AGG + chr4_1:60950552-60950571 Msa0561420:three_prime_UTR 40.0%
ATCAGTTTCCAACACAGAGA+TGG + chr4_1:60950666-60950685 Msa0561420:three_prime_UTR 40.0%
TAGAGATGTTCTTGCATGGA+AGG - chr4_1:60950738-60950757 None:intergenic 40.0%
! CTAATCTAGCAGCACGTTTT+AGG - chr4_1:60950804-60950823 None:intergenic 40.0%
TTCAATGGGGAACGAGAAAG+AGG - chr4_1:60941285-60941304 None:intergenic 45.0%
TCTTTCTCGTTCCCCATTGA+AGG + chr4_1:60941284-60941303 Msa0561420:five_prime_UTR 45.0%
TGAAAGAATGGCTTCGAAGC+TGG + chr4_1:60941319-60941338 Msa0561420:exon 45.0%
! GAAATGGAGAGCACATTACG+CGG - chr4_1:60941403-60941422 None:intergenic 45.0%
! TAAGGTACCTGAGAATACGG+TGG - chr4_1:60941448-60941467 None:intergenic 45.0%
TCACAGCCATCTTCCATTGA+CGG + chr4_1:60941585-60941604 Msa0561420:CDS 45.0%
! TGCAGCTCGCTAGTTTCTTT+AGG + chr4_1:60941860-60941879 Msa0561420:intron 45.0%
AACTCATGACATACACCCTC+CGG + chr4_1:60942185-60942204 Msa0561420:intron 45.0%
CTCTGCTCCGTTTACATTCA+AGG - chr4_1:60942571-60942590 None:intergenic 45.0%
ACAGTTGTCTGGTGGTCAAT+TGG + chr4_1:60942599-60942618 Msa0561420:CDS 45.0%
! GTTCAACATGCGTCTTTTCC+TGG - chr4_1:60942908-60942927 None:intergenic 45.0%
ACGCATGTTGAACTCATGGA+GGG + chr4_1:60942915-60942934 Msa0561420:CDS 45.0%
CATTACGCAGTTTCTCCAAC+TGG - chr4_1:60942941-60942960 None:intergenic 45.0%
GGAGAAACTGCGTAATGAGT+TGG + chr4_1:60942944-60942963 Msa0561420:CDS 45.0%
! CGTAATGAGTTGGCCGAAAA+GGG + chr4_1:60942954-60942973 Msa0561420:CDS 45.0%
TAAGCTCCTCAGTAAGGGAA+CGG - chr4_1:60943031-60943050 None:intergenic 45.0%
CCGAATTAAGCTCCTCAGTA+AGG - chr4_1:60943037-60943056 None:intergenic 45.0%
!! AAGCACTATAACGGCTTGGT+CGG - chr4_1:60943321-60943340 None:intergenic 45.0%
CTTCAAGCACTATAACGGCT+TGG - chr4_1:60943325-60943344 None:intergenic 45.0%
! CAACCTTCCTTTGAAGATCC+TGG - chr4_1:60943352-60943371 None:intergenic 45.0%
AGAAAGCAAGAGAAAGACGC+TGG + chr4_1:60943574-60943593 Msa0561420:CDS 45.0%
AAGATATGCCGTGGGAATTC+TGG + chr4_1:60943609-60943628 Msa0561420:CDS 45.0%
CTGTAAATAAGGGGGATACC+AGG + chr4_1:60944125-60944144 Msa0561420:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr4_1:60944387-60944406 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr4_1:60944390-60944409 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr4_1:60944422-60944441 Msa0561420:intron 45.0%
GTAGTTGTCATGTGACCGTA+AGG - chr4_1:60944462-60944481 None:intergenic 45.0%
GGGTGGTATTGCCAAAAAGT+TGG - chr4_1:60944534-60944553 None:intergenic 45.0%
AGAAGATCATGCACCATCCT+TGG - chr4_1:60944904-60944923 None:intergenic 45.0%
!! ATTCTTGCAGGCTTTGGATG+TGG + chr4_1:60945191-60945210 Msa0561420:intron 45.0%
CCTGGCAGAGTAGCATAATA+AGG - chr4_1:60945600-60945619 None:intergenic 45.0%
CCTTATTATGCTACTCTGCC+AGG + chr4_1:60945597-60945616 Msa0561420:intron 45.0%
TGGGACATATATGCCCCAAA+AGG + chr4_1:60945631-60945650 Msa0561420:three_prime_UTR 45.0%
TGCCACAACTTTGAGTACCA+AGG + chr4_1:60945682-60945701 Msa0561420:three_prime_UTR 45.0%
GCCACAACTTTGAGTACCAA+GGG + chr4_1:60945683-60945702 Msa0561420:three_prime_UTR 45.0%
TCCCTTGGTACTCAAAGTTG+TGG - chr4_1:60945687-60945706 None:intergenic 45.0%
GCTTCAGAGTTGGAATCATG+TGG + chr4_1:60945715-60945734 Msa0561420:three_prime_UTR 45.0%
GAGTTGTCCTGCATTCTATC+TGG - chr4_1:60945766-60945785 None:intergenic 45.0%
CTCCACCCTAAAACATTGGA+AGG - chr4_1:60945884-60945903 None:intergenic 45.0%
TCACTTCTTGGGCGTAAGTA+GGG - chr4_1:60945938-60945957 None:intergenic 45.0%
CTCCACAGTTCTCACTTCTT+GGG - chr4_1:60945949-60945968 None:intergenic 45.0%
TGACTAGATTGTTCCGGGAA+AGG + chr4_1:60946124-60946143 Msa0561420:intron 45.0%
TTGTTCCGGGAAAGGATTGT+AGG + chr4_1:60946132-60946151 Msa0561420:intron 45.0%
CCACTTGAAAGAAACTCTGC+TGG - chr4_1:60946309-60946328 None:intergenic 45.0%
CCAGCAGAGTTTCTTTCAAG+TGG + chr4_1:60946306-60946325 Msa0561420:intron 45.0%
ATGTGCAAATCGACATAGGC+CGG + chr4_1:60946567-60946586 Msa0561420:intron 45.0%
!!! CTTTTTGGAGTGGGTAGAGA+GGG - chr4_1:60946790-60946809 None:intergenic 45.0%
!!! ACTTTTTGGAGTGGGTAGAG+AGG - chr4_1:60946791-60946810 None:intergenic 45.0%
!! CACCGATGAACTTTTTGGAG+TGG - chr4_1:60946800-60946819 None:intergenic 45.0%
TGCAGATGTTAAGAGGCCAT+TGG + chr4_1:60946953-60946972 Msa0561420:three_prime_UTR 45.0%
TAAAGGACCAGAGTGGTTGA+CGG + chr4_1:60947244-60947263 Msa0561420:intron 45.0%
CTAGACAAACCATATGGAGG+TGG + chr4_1:60947631-60947650 Msa0561420:intron 45.0%
CCACCACTATTCACTACCAT+CGG - chr4_1:60947686-60947705 None:intergenic 45.0%
! ATGGTAGTGAATAGTGGTGG+TGG + chr4_1:60947686-60947705 Msa0561420:intron 45.0%
AAGTCTGTGAATGTGTTGCG+AGG + chr4_1:60947719-60947738 Msa0561420:intron 45.0%
AGTCTGTGAATGTGTTGCGA+GGG + chr4_1:60947720-60947739 Msa0561420:intron 45.0%
GATGCCATGATAGAGTTTGC+AGG + chr4_1:60947742-60947761 Msa0561420:intron 45.0%
! GGTTGGCTGCATAACAAGAT+TGG + chr4_1:60948035-60948054 Msa0561420:intron 45.0%
AAGTCCAGTTCCACATATCC+AGG + chr4_1:60948140-60948159 Msa0561420:three_prime_UTR 45.0%
ATGACCTGGATATGTGGAAC+TGG - chr4_1:60948147-60948166 None:intergenic 45.0%
GGTCCAATATTTAGGGACAG+AGG - chr4_1:60948302-60948321 None:intergenic 45.0%
! GGACCCTTTTGCCAAAATCA+CGG + chr4_1:60948317-60948336 Msa0561420:intron 45.0%
! GACCCTTTTGCCAAAATCAC+GGG + chr4_1:60948318-60948337 Msa0561420:intron 45.0%
ATCTCTCTCTCTCTCTCTCA+AGG - chr4_1:60948407-60948426 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr4_1:60948996-60949015 Msa0561420:intron 45.0%
!!! ATTTTTTTTGGTGGTGGCCG+GGG - chr4_1:60949057-60949076 None:intergenic 45.0%
CAGACGCAGCATAAATGGTA+TGG - chr4_1:60949306-60949325 None:intergenic 45.0%
CATGTCAGACGCAGCATAAA+TGG - chr4_1:60949311-60949330 None:intergenic 45.0%
CCACAAGGTTCAAAGATCGA+TGG - chr4_1:60949343-60949362 None:intergenic 45.0%
CCATCGATCTTTGAACCTTG+TGG + chr4_1:60949340-60949359 Msa0561420:three_prime_UTR 45.0%
TGAACAGCCATACCTGTGTT+AGG - chr4_1:60949366-60949385 None:intergenic 45.0%
GTTCCTATCGCCAGAAAAAC+TGG + chr4_1:60949790-60949809 Msa0561420:three_prime_UTR 45.0%
AAACTGGTGGCCTAAATGAC+AGG + chr4_1:60949806-60949825 Msa0561420:three_prime_UTR 45.0%
!! GATAGAGTAGGTAATGGGGT+AGG + chr4_1:60950037-60950056 Msa0561420:intron 45.0%
!! AGTAGGTAATGGGGTAGGTT+TGG + chr4_1:60950042-60950061 Msa0561420:intron 45.0%
!! GTAGGTAATGGGGTAGGTTT+GGG + chr4_1:60950043-60950062 Msa0561420:intron 45.0%
TTCATCCCAGCTAAAGAAGG+AGG - chr4_1:60950080-60950099 None:intergenic 45.0%
CACTCTCACACTCTCTTGTA+TGG - chr4_1:60950164-60950183 None:intergenic 45.0%
CAAGTTGCTTCCAACTCTCA+GGG - chr4_1:60950498-60950517 None:intergenic 45.0%
ACAAGTTGCTTCCAACTCTC+AGG - chr4_1:60950499-60950518 None:intergenic 45.0%
CTGATCTACCATCTCTGTGT+TGG - chr4_1:60950677-60950696 None:intergenic 45.0%
AAATATCCCCATGCGGGATG+CGG + chr4_1:60941204-60941223 Msa0561420:five_prime_UTR 50.0%
! GTCTTTGGGTTCACTCAGTG+AGG - chr4_1:60941245-60941264 None:intergenic 50.0%
GGACACACAGGCTTGTCTTT+GGG - chr4_1:60941259-60941278 None:intergenic 50.0%
AGGACACACAGGCTTGTCTT+TGG - chr4_1:60941260-60941279 None:intergenic 50.0%
AGAAAGAGGACAGGACACAC+AGG - chr4_1:60941271-60941290 None:intergenic 50.0%
GTGTGCTGCAATTTGAGCAG+CGG + chr4_1:60941353-60941372 Msa0561420:CDS 50.0%
! TGAGTTGAAGGGGATACCGA+GGG - chr4_1:60941711-60941730 None:intergenic 50.0%
GAATGTAAACGGAGCAGAGC+AGG + chr4_1:60942572-60942591 Msa0561420:CDS 50.0%
GACGCATGTTGAACTCATGG+AGG + chr4_1:60942914-60942933 Msa0561420:CDS 50.0%
! GCGTAATGAGTTGGCCGAAA+AGG + chr4_1:60942953-60942972 Msa0561420:CDS 50.0%
TAGGATCCGTTCCCTTACTG+AGG + chr4_1:60943022-60943041 Msa0561420:CDS 50.0%
AAAGACGCTGGATGAACCAG+TGG + chr4_1:60943586-60943605 Msa0561420:CDS 50.0%
AACCAGTGGAAGATATGCCG+TGG + chr4_1:60943600-60943619 Msa0561420:CDS 50.0%
ACCAGTGGAAGATATGCCGT+GGG + chr4_1:60943601-60943620 Msa0561420:CDS 50.0%
GGCTTACATCGTCTGCAACA+AGG + chr4_1:60943798-60943817 Msa0561420:CDS 50.0%
ACTAAAGCTCCCGCATATGC+AGG + chr4_1:60944346-60944365 Msa0561420:intron 50.0%
CTAAAGCTCCCGCATATGCA+GGG + chr4_1:60944347-60944366 Msa0561420:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG + chr4_1:60944444-60944463 Msa0561420:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG - chr4_1:60944455-60944474 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG - chr4_1:60944456-60944475 None:intergenic 50.0%
CTACTTTACCAGTTGCGCCA+AGG + chr4_1:60944478-60944497 Msa0561420:intron 50.0%
GAACAACTGAGGGGTAACCT+TGG - chr4_1:60944498-60944517 None:intergenic 50.0%
!! TCCATAACAGGTTGGTGGCT+TGG + chr4_1:60944978-60944997 Msa0561420:intron 50.0%
!! CCATAACAGGTTGGTGGCTT+GGG + chr4_1:60944979-60944998 Msa0561420:intron 50.0%
!! CATAACAGGTTGGTGGCTTG+GGG + chr4_1:60944980-60944999 Msa0561420:intron 50.0%
!! ATAACAGGTTGGTGGCTTGG+GGG + chr4_1:60944981-60945000 Msa0561420:intron 50.0%
TGCATGCAATATGACCGCGT+TGG + chr4_1:60945078-60945097 Msa0561420:three_prime_UTR 50.0%
!! ATCTGGGTTGGCACTGTTGA+AGG + chr4_1:60945255-60945274 Msa0561420:three_prime_UTR 50.0%
TCTGCCAGGCTCCTTTATAC+TGG + chr4_1:60945611-60945630 Msa0561420:intron 50.0%
CTGCCAGGCTCCTTTATACT+GGG + chr4_1:60945612-60945631 Msa0561420:intron 50.0%
TGTCCCAGTATAAAGGAGCC+TGG - chr4_1:60945618-60945637 None:intergenic 50.0%
CACTTCTTGGGCGTAAGTAG+GGG - chr4_1:60945937-60945956 None:intergenic 50.0%
CTCACTTCTTGGGCGTAAGT+AGG - chr4_1:60945939-60945958 None:intergenic 50.0%
CCTCCACAGTTCTCACTTCT+TGG - chr4_1:60945950-60945969 None:intergenic 50.0%
CCAAGAAGTGAGAACTGTGG+AGG + chr4_1:60945947-60945966 Msa0561420:three_prime_UTR 50.0%
AGTGGGTAGAGAGGGTTGAA+TGG - chr4_1:60946782-60946801 None:intergenic 50.0%
GGTTGACGGAGGAAGAGTTA+AGG + chr4_1:60947258-60947277 Msa0561420:intron 50.0%
AGACTGAGACCACCTCCATA+TGG - chr4_1:60947643-60947662 None:intergenic 50.0%
! CCGATGGTAGTGAATAGTGG+TGG + chr4_1:60947683-60947702 Msa0561420:intron 50.0%
TATCTAACACTGGAGCTGGG+AGG + chr4_1:60948096-60948115 Msa0561420:three_prime_UTR 50.0%
TGAACCTTGTGGCCTAACAC+AGG + chr4_1:60949351-60949370 Msa0561420:three_prime_UTR 50.0%
CATACCTGTGTTAGGCCACA+AGG - chr4_1:60949358-60949377 None:intergenic 50.0%
CTTGTGGCCTAACACAGGTA+TGG + chr4_1:60949356-60949375 Msa0561420:intron 50.0%
!! CCACCAGTTTTTCTGGCGAT+AGG - chr4_1:60949796-60949815 None:intergenic 50.0%
CCTATCGCCAGAAAAACTGG+TGG + chr4_1:60949793-60949812 Msa0561420:three_prime_UTR 50.0%
ACGACGAGCATCTGTGATGT+TGG - chr4_1:60950008-60950027 None:intergenic 50.0%
ATCCCAGCTAAAGAAGGAGG+CGG - chr4_1:60950077-60950096 None:intergenic 50.0%
GTCTGTGACTAGAGGAAGAG+CGG + chr4_1:60950588-60950607 Msa0561420:three_prime_UTR 50.0%
TGGGGAACGAGAAAGAGGAC+AGG - chr4_1:60941280-60941299 None:intergenic 55.0%
! TGGAGAGCACATTACGCGGT+GGG - chr4_1:60941399-60941418 None:intergenic 55.0%
! ATGGAGAGCACATTACGCGG+TGG - chr4_1:60941400-60941419 None:intergenic 55.0%
TGCGACACCACCGTATTCTC+AGG + chr4_1:60941438-60941457 Msa0561420:CDS 55.0%
CAGCCATCTTCCATTGACGG+AGG + chr4_1:60941588-60941607 Msa0561420:CDS 55.0%
CCTCCTCCGTCAATGGAAGA+TGG - chr4_1:60941594-60941613 None:intergenic 55.0%
CCATCTTCCATTGACGGAGG+AGG + chr4_1:60941591-60941610 Msa0561420:CDS 55.0%
TCTTCCATTGACGGAGGAGG+AGG + chr4_1:60941594-60941613 Msa0561420:CDS 55.0%
! GTGAGTTGAAGGGGATACCG+AGG - chr4_1:60941712-60941731 None:intergenic 55.0%
GAGCAGGCTGAACAGTTGTC+TGG + chr4_1:60942588-60942607 Msa0561420:CDS 55.0%
CAGGCTGAACAGTTGTCTGG+TGG + chr4_1:60942591-60942610 Msa0561420:CDS 55.0%
! GCGGATTGAAGTTGCTGACC+AGG + chr4_1:60942887-60942906 Msa0561420:CDS 55.0%
TGAACTCATGGAGGGCCAGT+TGG + chr4_1:60942923-60942942 Msa0561420:CDS 55.0%
TCCCACGGCATATCTTCCAC+TGG - chr4_1:60943605-60943624 None:intergenic 55.0%
AGAGATGGCACCAGTGGCTA+AGG + chr4_1:60943925-60943944 Msa0561420:three_prime_UTR 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr4_1:60944342-60944361 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr4_1:60944443-60944462 None:intergenic 55.0%
CCCAAGCCACCAACCTGTTA+TGG - chr4_1:60944982-60945001 None:intergenic 55.0%
GACTGCAGCAGCTTCAGAGT+TGG + chr4_1:60945705-60945724 Msa0561420:three_prime_UTR 55.0%
CGCCCAAGAAGTGAGAACTG+TGG + chr4_1:60945944-60945963 Msa0561420:three_prime_UTR 55.0%
GGGTAGAGAGGGTTGAATGG+AGG - chr4_1:60946779-60946798 None:intergenic 55.0%
TCTTCCTCCGTCAACCACTC+TGG - chr4_1:60947254-60947273 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr4_1:60948994-60949013 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr4_1:60948991-60949010 Msa0561420:intron 55.0%
TCCCAGCTAAAGAAGGAGGC+GGG - chr4_1:60950076-60950095 None:intergenic 55.0%
TTTCTGCCGCATCCCGCATG+GGG - chr4_1:60941213-60941232 None:intergenic 60.0%
GTTTCTGCCGCATCCCGCAT+GGG - chr4_1:60941214-60941233 None:intergenic 60.0%
CATGCGGGATGCGGCAGAAA+CGG + chr4_1:60941213-60941232 Msa0561420:five_prime_UTR 60.0%
ATGCGGGATGCGGCAGAAAC+GGG + chr4_1:60941214-60941233 Msa0561420:five_prime_UTR 60.0%
TCCATTGACGGAGGAGGAGG+AGG + chr4_1:60941597-60941616 Msa0561420:CDS 60.0%
TCCTCCTCCTCCTCCGTCAA+TGG - chr4_1:60941601-60941620 None:intergenic 60.0%
TGAAGGGGATACCGAGGGTG+TGG - chr4_1:60941706-60941725 None:intergenic 60.0%
! GGTTGGCTGAGACTGATGCG+CGG + chr4_1:60942868-60942887 Msa0561420:CDS 60.0%
TGCAGCAGAGATGGCACCAG+TGG + chr4_1:60943919-60943938 Msa0561420:three_prime_UTR 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr4_1:60944341-60944360 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr4_1:60944358-60944377 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr4_1:60944359-60944378 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr4_1:60944358-60944377 Msa0561420:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr4_1:60944359-60944378 Msa0561420:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr4_1:60944374-60944393 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr4_1:60944489-60944508 None:intergenic 60.0%
GGCTTGGGGGATGTTGTCAG+TGG + chr4_1:60944994-60945013 Msa0561420:three_prime_UTR 60.0%
CTGAAGCTGCTGCAGTCCCT+TGG - chr4_1:60945702-60945721 None:intergenic 60.0%
AGGACCAGAGTGGTTGACGG+AGG + chr4_1:60947247-60947266 Msa0561420:intron 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr4_1:60949037-60949056 Msa0561420:intron 60.0%
CCAGCTAAAGAAGGAGGCGG+GGG - chr4_1:60950074-60950093 None:intergenic 60.0%
CCCAGCTAAAGAAGGAGGCG+GGG - chr4_1:60950075-60950094 None:intergenic 60.0%
CCCCGCCTCCTTCTTTAGCT+GGG + chr4_1:60950072-60950091 Msa0561420:intron 60.0%
TCAGGGACGACCCTGAGAGT+TGG + chr4_1:60950485-60950504 Msa0561420:three_prime_UTR 60.0%
CGTTTCTGCCGCATCCCGCA+TGG - chr4_1:60941215-60941234 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr4_1:60944352-60944371 Msa0561420:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr4_1:60944353-60944372 Msa0561420:intron 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr4_1:60944357-60944376 Msa0561420:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr4_1:60944372-60944391 Msa0561420:intron 65.0%
CCCCCGCCTCCTTCTTTAGC+TGG + chr4_1:60950071-60950090 Msa0561420:intron 65.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr4_1:60949045-60949064 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 60941155 60951049 60941155 ID=Msa0561420;Name=Msa0561420
chr4_1 mRNA 60941155 60951049 60941155 ID=Msa0561420-mRNA-1;Parent=Msa0561420;Name=Msa0561420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171|1|1|1|1|0.93|15|1997|489
chr4_1 exon 60941155 60941459 60941155 ID=Msa0561420-mRNA-1:exon:19033;Parent=Msa0561420-mRNA-1
chr4_1 exon 60941533 60941713 60941533 ID=Msa0561420-mRNA-1:exon:19034;Parent=Msa0561420-mRNA-1
chr4_1 exon 60942567 60942657 60942567 ID=Msa0561420-mRNA-1:exon:19035;Parent=Msa0561420-mRNA-1
chr4_1 exon 60942763 60943946 60942763 ID=Msa0561420-mRNA-1:exon:19036;Parent=Msa0561420-mRNA-1
chr4_1 exon 60944988 60945110 60944988 ID=Msa0561420-mRNA-1:exon:19037;Parent=Msa0561420-mRNA-1
chr4_1 exon 60945201 60945276 60945201 ID=Msa0561420-mRNA-1:exon:19038;Parent=Msa0561420-mRNA-1
chr4_1 exon 60945351 60945535 60945351 ID=Msa0561420-mRNA-1:exon:19039;Parent=Msa0561420-mRNA-1
chr4_1 exon 60945619 60945813 60945619 ID=Msa0561420-mRNA-1:exon:19040;Parent=Msa0561420-mRNA-1
chr4_1 exon 60945897 60945968 60945897 ID=Msa0561420-mRNA-1:exon:19041;Parent=Msa0561420-mRNA-1
chr4_1 exon 60946765 60946974 60946765 ID=Msa0561420-mRNA-1:exon:19042;Parent=Msa0561420-mRNA-1
chr4_1 exon 60948036 60948161 60948036 ID=Msa0561420-mRNA-1:exon:19043;Parent=Msa0561420-mRNA-1
chr4_1 exon 60949223 60949372 60949223 ID=Msa0561420-mRNA-1:exon:19044;Parent=Msa0561420-mRNA-1
chr4_1 exon 60949766 60949827 60949766 ID=Msa0561420-mRNA-1:exon:19045;Parent=Msa0561420-mRNA-1
chr4_1 exon 60949901 60949976 60949901 ID=Msa0561420-mRNA-1:exon:19046;Parent=Msa0561420-mRNA-1
chr4_1 exon 60950448 60951049 60950448 ID=Msa0561420-mRNA-1:exon:19047;Parent=Msa0561420-mRNA-1
chr4_1 five_prime_UTR 60941155 60941325 60941155 ID=Msa0561420-mRNA-1:five_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 CDS 60941326 60941459 60941326 ID=Msa0561420-mRNA-1:cds;Parent=Msa0561420-mRNA-1
chr4_1 CDS 60941533 60941713 60941533 ID=Msa0561420-mRNA-1:cds;Parent=Msa0561420-mRNA-1
chr4_1 CDS 60942567 60942657 60942567 ID=Msa0561420-mRNA-1:cds;Parent=Msa0561420-mRNA-1
chr4_1 CDS 60942763 60943826 60942763 ID=Msa0561420-mRNA-1:cds;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60943827 60943946 60943827 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60944988 60945110 60944988 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60945201 60945276 60945201 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60945351 60945535 60945351 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60945619 60945813 60945619 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60945897 60945968 60945897 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60946765 60946974 60946765 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60948036 60948161 60948036 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60949223 60949372 60949223 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60949766 60949827 60949766 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60949901 60949976 60949901 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
chr4_1 three_prime_UTR 60950448 60951049 60950448 ID=Msa0561420-mRNA-1:three_prime_utr;Parent=Msa0561420-mRNA-1
Gene Sequence

>Msa0561420

ATGGCTTCGAAGCTGGCAACATGTTTTGTGTGCTGCAATTTGAGCAGCGGTTTCAACAACTGTACGAATACCCACCGCGTAATGTGCTCTCCATTTCCATCATCTTGCAAAATGCGACACCACCGTATTCTCAGTTCTCAGCAGAAAAGACAATACCACAAGAAAACATCATCATCATCATCATCATCACAGCCATCTTCCATTGACGGAGGAGGAGGAGGACCTCTTAATCCAAAATCTGATCACGATGATTCTCTACACTATTTGAACCGTCCAATTGTAGTGCCTGATACTAATAATAATTCCACACCCTCGGCCTTGAATGTAAACGGAGCAGAGCAGGCTGAACAGTTGTCTGGTGGTCAATTGGAAGATTTGTTATCCATGATAAAAAATGCAGAGAAAAACATCCTTCTTATAAATCAGGCTAGAGTTCGTGCACTTGAAGATCTTCAAAAGGTTCTTGCCGAAAAGAAAGCGCTACAAGCAGAAGTTAACGACTTAGAGATGAGGTTGGCTGAGACTGATGCGCGGATTGAAGTTGCTGACCAGGAAAAGACGCATGTTGAACTCATGGAGGGCCAGTTGGAGAAACTGCGTAATGAGTTGGCCGAAAAGGGTAGTACTGAAGAAAGCAATGCTGAATTGCATGAGCTTCATAATGATAGGATCCGTTCCCTTACTGAGGAGCTTAATTCGGTAAGAGAAGAAAATGCCTCTCTGAAGAATGCCATAGAATCATTTAAAATACAGCTCAATGATGTCAAGAACAATGATGAACGTTTGGTGGTATTGGAAAAGGAGCGCTTATTTTTGGAATCAACCCTAAAAGACCTTGAATCAAAACTGTCAATATCTCCGGAAGATGTATCTGAACTGTCCACACTTAGAGTTGAATGCAAGCATTTATCAGATAAGGTTGAAAACTTGCAATTGTTGCTAGATAAAGCAACGGAACAAGCCGACCAAGCCGTTATAGTGCTTGAAGAAAACCAGGATCTTCAAAGGAAGGTTGATAAATTGGAAACATCCCTTGAAGAAGCTAACGTCTATAAGCTATCATCTGATAAACTGCTAAAGTACAATGAACTAATGCAGCAAAAGATAAAACTATTGGAGAACAGCCTGCAAAAATCAGATGAAGATATAAACTCTTATATTCAGTTGTATCAGCAGTCAGTGAACGAATTTCAAGATACACTCGATATTCTGAAAAAAGAAAGCAAGAGAAAGACGCTGGATGAACCAGTGGAAGATATGCCGTGGGAATTCTGGAGTCAATTATTGCTTCTAATTGATGGTTGGACACTTGAAAAGAAGATAGCAGTAGATGATGCAAAGCTTTTGAGAGAAAAGGTGTGGAAAAAAGACAAGAGTATTAGTGATGTATATATGGCTTGCAAAGGAAAAAATGAAGACGAGGCTATATCTGCATTTCTTGGGCTTACATCGTCTGCAACAAGGTATTAA
Protein sequence

>Msa0561420

MASKLATCFVCCNLSSGFNNCTNTHRVMCSPFPSSCKMRHHRILSSQQKRQYHKKTSSSSSSSQPSSIDGGGGGPLNPKSDHDDSLHYLNRPIVVPDTNNNSTPSALNVNGAEQAEQLSGGQLEDLLSMIKNAEKNILLINQARVRALEDLQKVLAEKKALQAEVNDLEMRLAETDARIEVADQEKTHVELMEGQLEKLRNELAEKGSTEESNAELHELHNDRIRSLTEELNSVREENASLKNAIESFKIQLNDVKNNDERLVVLEKERLFLESTLKDLESKLSISPEDVSELSTLRVECKHLSDKVENLQLLLDKATEQADQAVIVLEENQDLQRKVDKLETSLEEANVYKLSSDKLLKYNELMQQKIKLLENSLQKSDEDINSYIQLYQQSVNEFQDTLDILKKESKRKTLDEPVEDMPWEFWSQLLLLIDGWTLEKKIAVDDAKLLREKVWKKDKSISDVYMACKGKNEDEAISAFLGLTSSATRY*