AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1071110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071110 MtrunA17_Chr7g0236161 95.041 121 6 0 45 165 84 204 2.11e-69 229
Msa1071110 MtrunA17_Chr7g0236201 95.041 121 6 0 45 165 84 204 3.27e-69 229
Msa1071110 MtrunA17_Chr7g0236121 95.041 121 6 0 45 165 84 204 3.51e-69 229
Msa1071110 MtrunA17_Chr2g0280841 43.158 190 94 4 48 232 89 269 5.44e-40 145
Msa1071110 MtrunA17_Chr2g0280791 56.667 120 50 1 48 165 83 202 3.11e-37 140
Msa1071110 MtrunA17_Chr7g0236511 58.120 117 47 2 50 165 93 208 1.06e-35 136
Msa1071110 MtrunA17_Chr7g0236651 58.974 117 46 2 50 165 85 200 1.86e-35 135
Msa1071110 MtrunA17_Chr7g0236521 58.974 117 46 2 50 165 67 182 3.59e-35 131
Msa1071110 MtrunA17_Chr7g0236551 58.120 117 47 2 50 165 87 202 1.14e-34 133
Msa1071110 MtrunA17_Chr4g0055021 55.932 118 49 3 50 165 87 203 1.88e-34 129
Msa1071110 MtrunA17_Chr7g0236561 55.469 128 51 3 39 165 60 182 2.64e-34 132
Msa1071110 MtrunA17_Chr2g0280801 56.557 122 49 1 48 165 88 209 4.44e-34 132
Msa1071110 MtrunA17_Chr7g0236641 55.556 117 50 2 50 165 87 202 4.75e-34 131
Msa1071110 MtrunA17_Chr7g0236691 58.120 117 47 2 50 165 87 202 2.45e-33 129
Msa1071110 MtrunA17_Chr2g0280771 52.459 122 54 1 48 165 80 201 3.73e-30 120
Msa1071110 MtrunA17_Chr7g0236591 51.587 126 54 4 50 169 114 238 3.91e-30 115
Msa1071110 MtrunA17_Chr7g0236231 56.522 115 42 3 50 163 97 204 6.40e-30 119
Msa1071110 MtrunA17_Chr7g0236341 54.701 117 51 2 50 165 87 202 9.32e-30 119
Msa1071110 MtrunA17_Chr2g0280781 50.820 122 54 2 48 165 79 198 2.65e-29 117
Msa1071110 MtrunA17_Chr8g0340081 45.669 127 65 2 45 168 86 211 4.31e-23 99.8
Msa1071110 MtrunA17_Chr8g0340071 44.094 127 67 2 45 168 84 209 8.22e-23 99.0
Msa1071110 MtrunA17_Chr8g0340061 45.000 120 65 1 45 164 84 202 1.44e-21 94.7
Msa1071110 MtrunA17_Chr8g0340091 40.458 131 74 2 45 172 137 266 3.70e-21 94.0
Msa1071110 MtrunA17_Chr3g0084451 39.024 123 70 2 39 161 84 201 4.66e-21 93.6
Msa1071110 MtrunA17_Chr3g0084621 40.708 113 65 2 50 161 91 202 1.38e-20 92.0
Msa1071110 MtrunA17_Chr8g0361261 40.351 114 64 3 52 163 120 231 1.45e-19 89.4
Msa1071110 MtrunA17_Chr3g0084441 41.085 129 65 4 39 161 84 207 1.57e-19 89.4
Msa1071110 MtrunA17_Chr2g0280691 40.833 120 66 3 50 165 87 205 1.88e-19 89.0
Msa1071110 MtrunA17_Chr8g0361301 40.351 114 64 3 52 163 89 200 4.54e-19 87.8
Msa1071110 MtrunA17_Chr8g0340111 42.623 122 67 2 45 164 85 205 5.38e-19 87.4
Msa1071110 MtrunA17_Chr3g0098791 37.984 129 71 3 39 163 86 209 5.58e-19 87.4
Msa1071110 MtrunA17_Chr3g0084431 40.310 129 66 4 39 161 84 207 6.51e-19 87.4
Msa1071110 MtrunA17_Chr3g0084491 37.097 124 72 3 39 161 97 215 7.74e-19 87.0
Msa1071110 MtrunA17_Chr3g0084691 37.903 124 71 3 39 161 84 202 4.26e-18 85.1
Msa1071110 MtrunA17_Chr3g0084421 38.583 127 70 4 39 162 43 164 7.47e-18 84.3
Msa1071110 MtrunA17_Chr3g0084681 40.351 114 64 3 50 160 91 203 1.11e-17 83.6
Msa1071110 MtrunA17_Chr3g0084411 37.692 130 73 4 39 165 81 205 2.47e-17 82.8
Msa1071110 MtrunA17_Chr8g0361441 38.462 117 67 2 50 163 90 204 3.52e-17 82.0
Msa1071110 MtrunA17_Chr2g0318831 34.921 126 76 3 39 163 81 201 4.03e-17 82.0
Msa1071110 MtrunA17_Chr2g0318811 32.903 155 94 4 39 192 78 223 7.08e-17 81.3
Msa1071110 MtrunA17_Chr2g0280681 38.532 109 64 1 58 163 97 205 7.60e-17 81.3
Msa1071110 MtrunA17_Chr4g0048581 35.652 115 70 3 52 163 95 208 1.04e-16 80.9
Msa1071110 MtrunA17_Chr4g0048631 36.765 136 72 5 39 165 81 211 1.15e-16 80.5
Msa1071110 MtrunA17_Chr3g0084651 38.168 131 70 4 39 163 81 206 1.25e-16 80.1
Msa1071110 MtrunA17_Chr8g0361311 40.171 117 65 4 50 163 86 200 1.43e-16 79.7
Msa1071110 MtrunA17_Chr2g0280701 40.678 118 65 3 50 163 85 201 1.14e-15 77.8
Msa1071110 MtrunA17_Chr8g0361251 39.316 117 66 4 50 163 86 200 1.21e-15 77.4
Msa1071110 MtrunA17_Chr4g0048721 35.246 122 73 2 50 165 92 213 1.55e-15 77.0
Msa1071110 MtrunA17_Chr4g0048741 36.364 121 72 1 50 165 103 223 1.77e-15 77.0
Msa1071110 MtrunA17_Chr4g0048691 32.787 122 76 1 50 165 108 229 4.60e-15 75.5
Msa1071110 MtrunA17_Chr4g0048641 33.884 121 75 1 50 165 110 230 8.05e-15 75.1
Msa1071110 MtrunA17_Chr4g0048801 38.542 96 55 2 73 165 112 206 1.13e-14 74.7
Msa1071110 MtrunA17_Chr8g0361431 38.182 110 66 2 56 164 105 213 1.21e-14 74.7
Msa1071110 MtrunA17_Chr2g0280751 37.500 120 63 6 50 164 97 209 2.45e-14 73.6
Msa1071110 MtrunA17_Chr5g0428101 36.607 112 67 2 56 164 97 207 3.31e-14 73.2
Msa1071110 MtrunA17_Chr4g0048761 36.434 129 70 4 50 168 103 229 3.39e-14 73.2
Msa1071110 MtrunA17_Chr4g0048651 33.333 132 79 3 39 165 101 228 5.00e-14 72.4
Msa1071110 MtrunA17_Chr4g0042351 31.667 120 80 1 44 163 81 198 1.35e-13 71.2
Msa1071110 MtrunA17_Chr8g0360201 31.613 155 84 4 76 210 9 161 2.45e-13 70.5
Msa1071110 MtrunA17_Chr2g0280711 35.000 120 69 4 54 165 93 211 6.18e-13 69.3
Msa1071110 MtrunA17_Chr2g0318841 32.540 126 79 3 39 163 78 198 7.12e-13 69.3
Msa1071110 MtrunA17_Chr4g0042421 37.209 129 74 5 39 163 78 203 7.15e-13 68.9
Msa1071110 MtrunA17_Chr8g0361151 33.645 107 71 0 48 154 93 199 7.48e-13 68.6
Msa1071110 MtrunA17_Chr2g0280731 37.168 113 62 4 50 159 93 199 8.55e-13 68.9
Msa1071110 MtrunA17_Chr5g0422921 37.190 121 66 4 51 164 82 199 1.04e-12 68.6
Msa1071110 MtrunA17_Chr4g0033911 70.213 47 10 2 1 43 179 225 4.61e-12 66.6
Msa1071110 MtrunA17_Chr4g0042381 30.579 121 81 2 44 163 80 198 9.21e-12 65.9
Msa1071110 MtrunA17_Chr4g0042361 30.702 114 77 1 52 165 123 234 9.52e-12 65.9
Msa1071110 MtrunA17_Chr4g0042441 37.288 118 69 3 50 163 88 204 1.89e-11 64.7
Msa1071110 MtrunA17_Chr4g0042391 28.030 132 88 1 39 163 67 198 2.11e-11 64.7
Msa1071110 MtrunA17_Chr8g0361141 33.043 115 70 3 45 154 89 201 5.75e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071110 AT1G11350.1 45.000 120 59 4 50 164 84 201 3.21e-23 100
Msa1071110 AT1G11300.2 45.299 117 60 3 50 163 89 204 3.45e-23 100
Msa1071110 AT1G11300.1 45.299 117 60 3 50 163 89 204 4.00e-23 100
Msa1071110 AT4G21390.1 41.880 117 64 2 51 164 92 207 3.25e-22 97.4
Msa1071110 AT4G21390.2 41.880 117 64 2 51 164 92 207 3.52e-22 97.4
Msa1071110 AT1G11303.1 43.697 119 63 3 50 165 89 206 8.43e-22 96.3
Msa1071110 AT1G11280.3 42.593 108 57 3 54 161 93 195 1.28e-18 87.0
Msa1071110 AT1G11280.4 42.593 108 57 3 54 161 103 205 1.31e-18 87.0
Msa1071110 AT1G11280.2 42.593 108 57 3 54 161 93 195 1.36e-18 86.7
Msa1071110 AT1G11280.1 42.593 108 57 3 54 161 103 205 1.47e-18 86.7
Msa1071110 AT1G11280.5 42.593 108 57 3 54 161 93 195 1.52e-18 86.7
Msa1071110 AT1G61420.1 41.346 104 60 1 50 153 85 187 2.92e-18 85.9
Msa1071110 AT1G61420.2 41.346 104 60 1 50 153 85 187 3.04e-18 85.9
Msa1071110 AT1G61420.4 41.346 104 60 1 50 153 85 187 3.04e-18 85.9
Msa1071110 AT1G61400.2 42.857 112 59 2 50 161 95 201 5.23e-18 85.1
Msa1071110 AT1G61400.1 42.857 112 59 2 50 161 95 201 5.62e-18 85.1
Msa1071110 AT1G11330.3 38.983 118 68 4 50 164 96 212 8.41e-18 84.3
Msa1071110 AT1G11330.1 38.983 118 68 4 50 164 96 212 9.04e-18 84.3
Msa1071110 AT1G11330.2 38.983 118 68 4 50 164 96 212 9.56e-18 84.3
Msa1071110 AT1G61490.4 47.525 101 50 3 50 149 85 183 2.13e-17 83.2
Msa1071110 AT1G61490.1 47.525 101 50 3 50 149 85 183 2.13e-17 83.2
Msa1071110 AT1G61490.2 47.525 101 50 3 50 149 85 183 2.13e-17 83.2
Msa1071110 AT1G61490.5 47.525 101 50 3 50 149 85 183 2.13e-17 83.2
Msa1071110 AT1G61490.6 47.525 101 50 3 50 149 85 183 2.37e-17 83.2
Msa1071110 AT1G61490.7 47.525 101 50 3 50 149 85 183 2.37e-17 83.2
Msa1071110 AT1G61610.1 35.965 114 71 2 52 164 93 205 4.89e-17 82.0
Msa1071110 AT1G11410.1 36.441 118 72 2 50 164 84 201 5.27e-17 82.0
Msa1071110 AT1G61610.2 35.965 114 71 2 52 164 93 205 5.29e-17 82.0
Msa1071110 AT1G11410.3 36.441 118 72 2 50 164 60 177 5.47e-17 82.0
Msa1071110 AT1G11410.4 36.441 118 72 2 50 164 91 208 5.69e-17 82.0
Msa1071110 AT1G61440.2 38.462 104 63 1 50 153 78 180 8.22e-17 81.6
Msa1071110 AT1G61440.1 38.462 104 63 1 50 153 78 180 8.42e-17 81.3
Msa1071110 AT1G61440.3 38.462 104 63 1 50 153 78 180 8.92e-17 81.3
Msa1071110 AT4G21380.2 38.017 121 68 3 50 165 93 211 2.84e-16 79.7
Msa1071110 AT4G21380.1 38.017 121 68 3 50 165 93 211 3.33e-16 79.7
Msa1071110 AT1G11340.3 35.593 118 73 2 50 164 149 266 3.71e-16 79.3
Msa1071110 AT1G11340.2 35.593 118 73 2 50 164 149 266 3.75e-16 79.3
Msa1071110 AT1G11340.1 35.593 118 73 2 50 164 81 198 3.87e-16 79.3
Msa1071110 AT1G61460.1 38.462 104 63 1 50 153 86 188 8.95e-16 78.2
Msa1071110 AT1G61380.1 36.538 104 65 1 50 153 82 184 9.36e-16 78.2
Msa1071110 AT1G61430.8 39.000 100 60 1 50 149 85 183 1.02e-15 78.2
Msa1071110 AT1G61430.7 39.000 100 60 1 50 149 85 183 1.02e-15 78.2
Msa1071110 AT1G61430.5 39.000 100 60 1 50 149 85 183 1.03e-15 78.2
Msa1071110 AT1G61480.1 39.423 104 62 1 50 153 85 187 1.04e-15 78.2
Msa1071110 AT1G61430.10 39.000 100 60 1 50 149 62 160 1.20e-15 77.8
Msa1071110 AT1G61430.9 39.000 100 60 1 50 149 85 183 1.46e-15 77.8
Msa1071110 AT1G61430.2 39.000 100 60 1 50 149 85 183 1.53e-15 77.4
Msa1071110 AT1G61430.6 39.000 100 60 1 50 149 85 183 1.53e-15 77.4
Msa1071110 AT1G61430.4 39.000 100 60 1 50 149 62 160 1.54e-15 77.4
Msa1071110 AT1G61430.3 39.000 100 60 1 50 149 94 192 1.54e-15 77.4
Msa1071110 AT1G61430.1 39.000 100 60 1 50 149 85 183 1.57e-15 77.8
Msa1071110 AT1G61430.11 39.000 100 60 1 50 149 62 160 1.62e-15 77.4
Msa1071110 AT1G61430.12 39.000 100 60 1 50 149 62 160 1.62e-15 77.4
Msa1071110 AT1G61430.13 39.000 100 60 1 50 149 62 160 1.62e-15 77.4
Msa1071110 AT1G61550.1 36.364 110 69 1 54 163 84 192 9.19e-15 75.5
Msa1071110 AT1G65790.3 37.069 116 68 3 50 163 91 203 2.67e-14 73.9
Msa1071110 AT1G65790.2 37.069 116 68 3 50 163 91 203 2.67e-14 73.9
Msa1071110 AT1G65790.1 37.069 116 68 3 50 163 91 203 3.03e-14 73.9
Msa1071110 AT3G12000.1 33.613 119 73 3 50 164 100 216 7.80e-14 72.0
Msa1071110 AT1G61390.1 33.636 110 72 1 54 163 107 215 1.16e-13 72.0
Msa1071110 AT1G61360.2 36.000 100 63 1 54 153 4 102 1.29e-13 72.0
Msa1071110 AT1G61360.3 36.000 100 63 1 54 153 4 102 1.29e-13 72.0
Msa1071110 AT1G61360.4 36.000 100 63 1 54 153 4 102 1.29e-13 72.0
Msa1071110 AT1G61360.1 36.000 100 63 1 54 153 85 183 1.59e-13 71.6
Msa1071110 AT1G11410.2 41.026 78 46 0 87 164 9 86 2.39e-13 70.9
Msa1071110 AT3G16030.7 37.500 120 63 4 58 168 104 220 5.45e-13 70.1
Msa1071110 AT3G16030.6 37.500 120 63 4 58 168 104 220 5.96e-13 69.7
Msa1071110 AT3G16030.3 37.500 120 63 4 58 168 104 220 6.09e-13 69.7
Msa1071110 AT3G16030.8 37.500 120 63 4 58 168 104 220 6.09e-13 69.7
Msa1071110 AT3G16030.5 37.500 120 63 4 58 168 104 220 6.09e-13 69.7
Msa1071110 AT3G16030.4 37.500 120 63 4 58 168 104 220 6.09e-13 69.7
Msa1071110 AT3G16030.1 37.500 120 63 4 58 168 93 209 6.48e-13 69.7
Msa1071110 AT1G61370.1 32.727 110 73 1 54 163 90 198 1.12e-12 68.9
Msa1071110 AT1G61500.1 39.286 84 51 0 67 150 102 185 1.67e-12 68.6
Msa1071110 AT1G61500.3 39.286 84 51 0 67 150 107 190 1.71e-12 68.6
Msa1071110 AT1G61500.2 39.286 84 51 0 67 150 84 167 1.77e-12 68.6
Msa1071110 AT2G19130.1 36.885 122 68 6 50 165 85 203 3.98e-12 67.4
Msa1071110 AT4G27290.1 32.773 119 73 3 51 163 87 204 4.02e-12 67.4
Msa1071110 AT4G27290.2 32.773 119 73 3 51 163 87 204 4.17e-12 67.4
Msa1071110 AT5G18470.1 32.824 131 76 4 50 173 107 232 4.01e-11 63.9

Find 81 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAATGGCCAACTTAATTT+TGG 0.179646 7_2:-67548051 Msa1071110:CDS
AGCCACCATATGCATGATTT+TGG 0.226428 7_2:+67548532 None:intergenic
GGATCGAACTGGACAAGTTT+TGG 0.228029 7_2:-67548193 Msa1071110:CDS
CGCTAATAGCGTAGTTCTTC+GGG 0.233925 7_2:+67548142 None:intergenic
ATGGAAAGAAAGAGGTGATT+TGG 0.310562 7_2:-67549168 Msa1071110:CDS
GCACAACAGAAAGAACTATA+TGG 0.319207 7_2:-67549069 Msa1071110:CDS
TCGCTAATAGCGTAGTTCTT+CGG 0.319484 7_2:+67548141 None:intergenic
TAAAAGTTTCGAACTTGAAT+TGG 0.321703 7_2:+67549120 None:intergenic
CGACCCGAGGGAGGCCCAAC+AGG 0.337485 7_2:+67548028 None:intergenic
TTGGCCTGTTGGGCCTCCCT+CGG 0.357329 7_2:-67548032 Msa1071110:CDS
TCTGCGAATATGACCGGTCT+TGG 0.362323 7_2:+67549881 None:intergenic
GCGCTATTAGCGCAGCCCTC+TGG 0.371325 7_2:-67548071 Msa1071110:CDS
CTTGAATTGGTTGCAACATT+CGG 0.397503 7_2:+67549133 None:intergenic
GTCAAGATGCGAGTACTGTT+TGG 0.397651 7_2:+67549951 None:intergenic
CGGCTTGAACCGTTCCCCTT+AGG 0.399070 7_2:+67547349 None:intergenic
TTGCTTGTAAGTTTCATGTT+TGG 0.400776 7_2:+67549013 None:intergenic
CCCCAGAAAAGCCACGCTCC+AGG 0.401832 7_2:-67548095 Msa1071110:CDS
CTATACCTGAAGTGTTCATA+TGG 0.404879 7_2:-67548898 Msa1071110:CDS
CTTACAAGCAACAAAATAAC+AGG 0.405748 7_2:-67549001 Msa1071110:CDS
TTTGGCAACATTACATTTGA+AGG 0.409920 7_2:+67549031 None:intergenic
TACTCGCATCTTGACTGAAA+TGG 0.413605 7_2:-67549943 Msa1071110:CDS
TGGCCTGTTGGGCCTCCCTC+GGG 0.418113 7_2:-67548031 Msa1071110:intron
TGCCTTAGAGAGGAAAGATT+GGG 0.438140 7_2:+67548565 None:intergenic
GTCTTCCAAAATCATGCATA+TGG 0.439371 7_2:-67548537 Msa1071110:CDS
TACGGGAGGTTCTCGACCTA+AGG 0.441058 7_2:-67547365 Msa1071110:CDS
GGCTGCGCTAATAGCGCCCC+TGG 0.442909 7_2:+67548077 None:intergenic
GGGAACCTTGTACTACTTGA+AGG 0.452115 7_2:-67549091 Msa1071110:CDS
ATGCCTTAGAGAGGAAAGAT+TGG 0.455166 7_2:+67548564 None:intergenic
CCCAGAAAAGCCACGCTCCA+GGG 0.461530 7_2:-67548094 Msa1071110:CDS
GGTGCATTGCAGGATCGAAC+TGG 0.466519 7_2:-67548204 Msa1071110:intron
ACATTACATTTGAAGGATGC+TGG 0.469330 7_2:+67549038 None:intergenic
CTTCCAATGGATGGATCATA+AGG 0.469504 7_2:+67548947 None:intergenic
AATGATCTTGTGGTATTGAA+TGG 0.483224 7_2:-67549187 Msa1071110:CDS
ACATTCCATATGAACACTTC+AGG 0.487869 7_2:+67548893 None:intergenic
GTTGTTAAAATATCTGATAA+TGG 0.494516 7_2:-67549211 Msa1071110:CDS
GCAGGACGATGAGGACATCT+AGG 0.501628 7_2:-67546641 None:intergenic
GGGTTCGTTCGTAAAGCTGC+AGG 0.502683 7_2:-67546659 Msa1071110:CDS
GCCGGATGGATATTACTTCA+AGG 0.509171 7_2:-67546680 Msa1071110:CDS
CTAATAGCGCCCCTGGAGCG+TGG 0.514559 7_2:+67548084 None:intergenic
ACCTTTCTTTAATCTTCGCA+TGG 0.516240 7_2:+67549977 None:intergenic
CACAACAGAAAGAACTATAT+GGG 0.518422 7_2:-67549068 Msa1071110:CDS
AAATCATGCATATGGTGGCT+TGG 0.519089 7_2:-67548529 Msa1071110:intron
CCAACAGGCCAAAATTAAGT+TGG 0.522928 7_2:+67548043 None:intergenic
TGTGGACTGTGTTCCAAGAC+CGG 0.524110 7_2:-67549894 Msa1071110:CDS
AGAAAGTAAAACAAACATCA+TGG 0.525875 7_2:-67548976 Msa1071110:CDS
CCCTTGAAGTAATATCCATC+CGG 0.527653 7_2:+67546679 None:intergenic
ACACCTTATGATCCATCCAT+TGG 0.528123 7_2:-67548950 Msa1071110:CDS
ACGGGAGGTTCTCGACCTAA+GGG 0.528654 7_2:-67547364 Msa1071110:CDS
GGACTCCCTCGGTGTCGTGC+GGG 0.529415 7_2:+67547319 None:intergenic
ATTAGCGCAGCCCTCTGGAA+TGG 0.548368 7_2:-67548066 Msa1071110:CDS
TTGTGCCTTCAAGTAGTACA+AGG 0.550916 7_2:+67549086 None:intergenic
CTTGACTGAAATGGATGTTG+TGG 0.551935 7_2:-67549934 Msa1071110:CDS
GGTTGCAACATTCGGTGCGT+TGG 0.554193 7_2:+67549141 None:intergenic
CGGACTCCCTCGGTGTCGTG+CGG 0.558698 7_2:+67547318 None:intergenic
CCGGATGGATATTACTTCAA+GGG 0.560393 7_2:-67546679 Msa1071110:CDS
AGCGTAGTTCTTCGGGTCTG+TGG 0.561359 7_2:+67548149 None:intergenic
GGCGGTTCATAGAGAGAAGG+AGG 0.565613 7_2:+67548588 None:intergenic
CCAGAAAAGCCACGCTCCAG+GGG 0.570816 7_2:-67548093 Msa1071110:CDS
ACAGTTTCTGCGAATATGAC+CGG 0.572855 7_2:+67549875 None:intergenic
GGGGAACGGTTCAAGCCGCA+AGG 0.582207 7_2:-67547344 Msa1071110:CDS
AGGGACCCGCACGACACCGA+GGG 0.583715 7_2:-67547324 Msa1071110:CDS
ACGCACTACCGACCCGAGGG+AGG 0.597186 7_2:+67548019 None:intergenic
ACCATGCGAAGATTAAAGAA+AGG 0.597925 7_2:-67549978 Msa1071110:CDS
CGTAAAGCTGCAGGACGATG+AGG 0.598942 7_2:-67546650 Msa1071110:CDS
GGTTCTCGACCTAAGGGGAA+CGG 0.601216 7_2:-67547358 Msa1071110:CDS
GTACGTACATCGGACTCCCT+CGG 0.614722 7_2:+67547308 None:intergenic
ATTAAGTTGGCCATTCCAGA+GGG 0.616016 7_2:+67548056 None:intergenic
AATTAAGTTGGCCATTCCAG+AGG 0.617912 7_2:+67548055 None:intergenic
AAGACTTTGATGCCTTAGAG+AGG 0.619771 7_2:+67548555 None:intergenic
TGATAATGGTAATGATCTTG+TGG 0.621215 7_2:-67549197 Msa1071110:CDS
TATGCATGTTCGTAGCCGGA+TGG 0.622403 7_2:-67546694 Msa1071110:intron
GGTATTGAATGGAAAGAAAG+AGG 0.631723 7_2:-67549176 Msa1071110:CDS
TTCCAAAATCATGCATATGG+TGG 0.636255 7_2:-67548534 Msa1071110:CDS
GGGAACGGTTCAAGCCGCAA+GGG 0.640288 7_2:-67547343 Msa1071110:CDS
GCCTTAGAGAGGAAAGATTG+GGG 0.640665 7_2:+67548566 None:intergenic
AAGGGACCCGCACGACACCG+AGG 0.667260 7_2:-67547325 Msa1071110:CDS
CGGGAGGTTCTCGACCTAAG+GGG 0.667516 7_2:-67547363 Msa1071110:CDS
CATGACCGATGTACGTACAT+CGG 0.687030 7_2:+67547298 None:intergenic
GGTGTCGTGCGGGTCCCTTG+CGG 0.692458 7_2:+67547329 None:intergenic
GGAGTCCGATGTACGTACAT+CGG 0.701046 7_2:-67547303 Msa1071110:CDS
CCTTAGAGAGGAAAGATTGG+GGG 0.725392 7_2:+67548567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTATATACAATGT+AGG - chr7_2:67546965-67546984 Msa1071110:intron 10.0%
!!! AGTTTAATTTTGTTTTTTTA+TGG + chr7_2:67547071-67547090 None:intergenic 10.0%
!! AAAACAAAATTAAACTAAAA+TGG - chr7_2:67547075-67547094 Msa1071110:intron 10.0%
!!! TTAATTTTGTTTTTGAAAGA+AGG + chr7_2:67547044-67547063 None:intergenic 15.0%
!! TTTATTTATATATGGAACAA+GGG - chr7_2:67547137-67547156 Msa1071110:intron 15.0%
!!! AATTTATCAAAAGTACATTT+AGG + chr7_2:67548323-67548342 None:intergenic 15.0%
!! ACATTTATAAACTTATTTCA+TGG + chr7_2:67548369-67548388 None:intergenic 15.0%
!!! TATTATCTTGATTCATTTTA+CGG + chr7_2:67549383-67549402 None:intergenic 15.0%
!! AAAATTAAACTAAAATGGCA+TGG - chr7_2:67547080-67547099 Msa1071110:intron 20.0%
!!! CTTTATTTATATATGGAACA+AGG - chr7_2:67547136-67547155 Msa1071110:intron 20.0%
!!! TTCATGTTTGTTAATTCAAT+TGG + chr7_2:67547192-67547211 None:intergenic 20.0%
!! GTTGTTAAAATATCTGATAA+TGG - chr7_2:67547406-67547425 Msa1071110:intron 20.0%
!!! ATAATTCTATGCTTTAAACA+TGG + chr7_2:67548281-67548300 None:intergenic 20.0%
!! TAAATGTATATATATGTTGC+TGG - chr7_2:67548382-67548401 Msa1071110:intron 20.0%
!!! AATCATATCTTACTTGTTAT+AGG + chr7_2:67549709-67549728 None:intergenic 20.0%
! AACGAAGAAAATTAACTACT+GGG + chr7_2:67546783-67546802 None:intergenic 25.0%
!! TGCTGCTCTTTATTTATATA+TGG - chr7_2:67547129-67547148 Msa1071110:intron 25.0%
!! TGCAACAATAATTTTCAACT+AGG - chr7_2:67547357-67547376 Msa1071110:CDS 25.0%
!! GCAACAATAATTTTCAACTA+GGG - chr7_2:67547358-67547377 Msa1071110:CDS 25.0%
!! CAACAATAATTTTCAACTAG+GGG - chr7_2:67547359-67547378 Msa1071110:CDS 25.0%
! TAAAAGTTTCGAACTTGAAT+TGG + chr7_2:67547500-67547519 None:intergenic 25.0%
! AGAAAGTAAAACAAACATCA+TGG - chr7_2:67547641-67547660 Msa1071110:intron 25.0%
! TATTTAAGTAATCTCGCATA+AGG - chr7_2:67547924-67547943 Msa1071110:intron 25.0%
! ATTTAAGTAATCTCGCATAA+GGG - chr7_2:67547925-67547944 Msa1071110:intron 25.0%
! CATAGAATTATGTTTAAGAG+AGG - chr7_2:67548290-67548309 Msa1071110:intron 25.0%
! TTGGGTAAAAATTGGAAATT+TGG - chr7_2:67548443-67548462 Msa1071110:intron 25.0%
! GATTCTTGAAAAGAAAATCA+TGG - chr7_2:67548697-67548716 Msa1071110:intron 25.0%
! CAAGTAAGATATGATTATGA+CGG - chr7_2:67549713-67549732 Msa1071110:intron 25.0%
!! ATCTGAAACAAATAAGGATT+GGG + chr7_2:67549892-67549911 None:intergenic 25.0%
!! TATCTGAAACAAATAAGGAT+TGG + chr7_2:67549893-67549912 None:intergenic 25.0%
ACGAAGAAAATTAACTACTG+GGG + chr7_2:67546782-67546801 None:intergenic 30.0%
CAACGAAGAAAATTAACTAC+TGG + chr7_2:67546784-67546803 None:intergenic 30.0%
TTATATATGGAACAAGGGTA+TGG - chr7_2:67547142-67547161 Msa1071110:intron 30.0%
AGTGAGCTCTACATTTAATT+TGG + chr7_2:67547240-67547259 None:intergenic 30.0%
! CAGACTTATCAATTTTCTTC+TGG - chr7_2:67547382-67547401 Msa1071110:intron 30.0%
!! TGATAATGGTAATGATCTTG+TGG - chr7_2:67547420-67547439 Msa1071110:intron 30.0%
! AATGATCTTGTGGTATTGAA+TGG - chr7_2:67547430-67547449 Msa1071110:intron 30.0%
! AGTTCGAAACTTTTAGATTC+AGG - chr7_2:67547505-67547524 Msa1071110:intron 30.0%
! GTTCGAAACTTTTAGATTCA+GGG - chr7_2:67547506-67547525 Msa1071110:intron 30.0%
CACAACAGAAAGAACTATAT+GGG - chr7_2:67547549-67547568 Msa1071110:intron 30.0%
TTTGGCAACATTACATTTGA+AGG + chr7_2:67547589-67547608 None:intergenic 30.0%
TTGCTTGTAAGTTTCATGTT+TGG + chr7_2:67547607-67547626 None:intergenic 30.0%
CTTACAAGCAACAAAATAAC+AGG - chr7_2:67547616-67547635 Msa1071110:intron 30.0%
! AGGGAGTATATAAGTATGTT+TGG - chr7_2:67547944-67547963 Msa1071110:intron 30.0%
! GGGAGTATATAAGTATGTTT+GGG - chr7_2:67547945-67547964 Msa1071110:intron 30.0%
GGAGTATATAAGTATGTTTG+GGG - chr7_2:67547946-67547965 Msa1071110:intron 30.0%
AGAAAACTTGGATTAAAGCT+TGG - chr7_2:67548126-67548145 Msa1071110:CDS 30.0%
ATAGATAGTTTACCTTCCTT+GGG - chr7_2:67548244-67548263 Msa1071110:intron 30.0%
TATATGTTGCTGGATGATTA+TGG - chr7_2:67548392-67548411 Msa1071110:intron 30.0%
!!! GACAAGTTTTGGGTAAAAAT+TGG - chr7_2:67548435-67548454 Msa1071110:intron 30.0%
AAACGTTGAAAGAAATGCTT+CGG + chr7_2:67548625-67548644 None:intergenic 30.0%
ATAACCCTAAAACAACATCT+AGG - chr7_2:67548654-67548673 Msa1071110:intron 30.0%
!!! ATTGCCTAGATGTTGTTTTA+GGG + chr7_2:67548661-67548680 None:intergenic 30.0%
TCACTCTTGTCATTCTTATT+AGG + chr7_2:67548727-67548746 None:intergenic 30.0%
GGTAGCTATGAAATAAGAAT+GGG - chr7_2:67548776-67548795 Msa1071110:intron 30.0%
GATAGCATGAACAATAAGTA+TGG - chr7_2:67548839-67548858 Msa1071110:intron 30.0%
ACAATAAGTATGGCTAGTAT+AGG - chr7_2:67548849-67548868 Msa1071110:intron 30.0%
GTTCATAAACATACTTATCG+TGG + chr7_2:67548978-67548997 None:intergenic 30.0%
CGTATCTAAGTTCATTCATT+AGG + chr7_2:67549425-67549444 None:intergenic 30.0%
TGCCATGATTATGTTATGTT+AGG - chr7_2:67549604-67549623 Msa1071110:intron 30.0%
! CTGCTTATCTGAAACAAATA+AGG + chr7_2:67549898-67549917 None:intergenic 30.0%
CTTATTTGTTTCAGATAAGC+AGG - chr7_2:67549896-67549915 Msa1071110:CDS 30.0%
!! CAGAGGGGTGTTTAAAAAAA+TGG - chr7_2:67547299-67547318 Msa1071110:CDS 35.0%
! GGTATTGAATGGAAAGAAAG+AGG - chr7_2:67547441-67547460 Msa1071110:intron 35.0%
ATGGAAAGAAAGAGGTGATT+TGG - chr7_2:67547449-67547468 Msa1071110:intron 35.0%
CTTGAATTGGTTGCAACATT+CGG + chr7_2:67547487-67547506 None:intergenic 35.0%
GCACAACAGAAAGAACTATA+TGG - chr7_2:67547548-67547567 Msa1071110:intron 35.0%
ACATTACATTTGAAGGATGC+TGG + chr7_2:67547582-67547601 None:intergenic 35.0%
AAAAAGAAGCTTCCAATGGA+TGG + chr7_2:67547682-67547701 None:intergenic 35.0%
ACTCAAAAAGAAGCTTCCAA+TGG + chr7_2:67547686-67547705 None:intergenic 35.0%
!!! GCTTCTTTTTGAGTGTTGAA+AGG - chr7_2:67547692-67547711 Msa1071110:intron 35.0%
! CTATACCTGAAGTGTTCATA+TGG - chr7_2:67547719-67547738 Msa1071110:intron 35.0%
ACATTCCATATGAACACTTC+AGG + chr7_2:67547727-67547746 None:intergenic 35.0%
TCATCTGTTAAATGTAGCAG+AGG - chr7_2:67547778-67547797 Msa1071110:intron 35.0%
CATCTGTTAAATGTAGCAGA+GGG - chr7_2:67547779-67547798 Msa1071110:intron 35.0%
AAGCATGAGTTATGTATCAG+TGG - chr7_2:67547875-67547894 Msa1071110:intron 35.0%
! ACTTTCTCTCTCTAGGTTTT+GGG - chr7_2:67547993-67548012 Msa1071110:intron 35.0%
GTCTTCCAAAATCATGCATA+TGG - chr7_2:67548080-67548099 Msa1071110:CDS 35.0%
TTCCAAAATCATGCATATGG+TGG - chr7_2:67548083-67548102 Msa1071110:CDS 35.0%
GCAAGAAACAAGAGAAAACT+TGG - chr7_2:67548114-67548133 Msa1071110:CDS 35.0%
ACTTGGATTAAAGCTTGGTT+TGG - chr7_2:67548131-67548150 Msa1071110:CDS 35.0%
TCAAGATTGAAGCAAAAGCT+AGG - chr7_2:67548170-67548189 Msa1071110:CDS 35.0%
CAAGATTGAAGCAAAAGCTA+GGG - chr7_2:67548171-67548190 Msa1071110:CDS 35.0%
GAAAGCAAGCAAACATGATA+GGG - chr7_2:67548213-67548232 Msa1071110:intron 35.0%
CAAGGAAGGTAAACTATCTA+TGG + chr7_2:67548245-67548264 None:intergenic 35.0%
CATAGATAGTTTACCTTCCT+TGG - chr7_2:67548243-67548262 Msa1071110:intron 35.0%
! TGGAATGGCCAACTTAATTT+TGG - chr7_2:67548566-67548585 Msa1071110:CDS 35.0%
!! CAACTTAATTTTGGCCTGTT+GGG - chr7_2:67548575-67548594 Msa1071110:CDS 35.0%
!!! CATTGCCTAGATGTTGTTTT+AGG + chr7_2:67548662-67548681 None:intergenic 35.0%
GAGATTAAGCCGATATTACT+CGG - chr7_2:67548754-67548773 Msa1071110:intron 35.0%
AGATTAAGCCGATATTACTC+GGG - chr7_2:67548755-67548774 Msa1071110:intron 35.0%
GGGTAGCTATGAAATAAGAA+TGG - chr7_2:67548775-67548794 Msa1071110:intron 35.0%
TATTGTTCATGCTATCTTGC+TGG + chr7_2:67548835-67548854 None:intergenic 35.0%
ACTTCGCATCTTATCTTTCT+AGG + chr7_2:67548882-67548901 None:intergenic 35.0%
GCTAAGTCATACTTGATCAT+AGG + chr7_2:67548917-67548936 None:intergenic 35.0%
CTTAGCAAATATGTAAGTCG+TGG - chr7_2:67548931-67548950 Msa1071110:CDS 35.0%
CATAAACATACTTATCGTGG+CGG + chr7_2:67548975-67548994 None:intergenic 35.0%
AAGTACAAGTTACCGCTAAT+CGG - chr7_2:67548998-67549017 Msa1071110:CDS 35.0%
TACATGCTTGCTTATTACCT+CGG + chr7_2:67549038-67549057 None:intergenic 35.0%
AGACCATGACAAGTATAAGT+AGG - chr7_2:67549086-67549105 Msa1071110:CDS 35.0%
TTGTTAATTTCGGTGACATG+CGG + chr7_2:67549191-67549210 None:intergenic 35.0%
! CACCTACGTCTTGTTAATTT+CGG + chr7_2:67549201-67549220 None:intergenic 35.0%
! GTCATGTATGGGATTGATTT+CGG - chr7_2:67549336-67549355 Msa1071110:intron 35.0%
! TCATGTATGGGATTGATTTC+GGG - chr7_2:67549337-67549356 Msa1071110:intron 35.0%
! ATTCATTTTACGGATAGTCC+CGG + chr7_2:67549373-67549392 None:intergenic 35.0%
GGCCTAACATAACATAATCA+TGG + chr7_2:67549609-67549628 None:intergenic 35.0%
TACTCGCATCTTGACTGAAA+TGG - chr7_2:67546674-67546693 Msa1071110:CDS 40.0%
CTTGACTGAAATGGATGTTG+TGG - chr7_2:67546683-67546702 Msa1071110:intron 40.0%
!! GAAAAAGCACCGAGAAAATG+TGG - chr7_2:67546705-67546724 Msa1071110:intron 40.0%
! GAACACAGTCCACATTTTCT+CGG + chr7_2:67546717-67546736 None:intergenic 40.0%
ACAGTTTCTGCGAATATGAC+CGG + chr7_2:67546745-67546764 None:intergenic 40.0%
AAAGCCTGCAAGATTTCAGA+GGG - chr7_2:67547283-67547302 Msa1071110:intron 40.0%
GACATGTTCGCCAAGTTAAA+AGG - chr7_2:67547321-67547340 Msa1071110:CDS 40.0%
TCGCCAAGTTAAAAGGAGAA+AGG - chr7_2:67547328-67547347 Msa1071110:CDS 40.0%
CGCCAAGTTAAAAGGAGAAA+GGG - chr7_2:67547329-67547348 Msa1071110:CDS 40.0%
GCCAAGTTAAAAGGAGAAAG+GGG - chr7_2:67547330-67547349 Msa1071110:CDS 40.0%
!! ACCCCTTTCTCCTTTTAACT+TGG + chr7_2:67547334-67547353 None:intergenic 40.0%
TTGTGCCTTCAAGTAGTACA+AGG + chr7_2:67547534-67547553 None:intergenic 40.0%
ACACCTTATGATCCATCCAT+TGG - chr7_2:67547667-67547686 Msa1071110:intron 40.0%
CTTCCAATGGATGGATCATA+AGG + chr7_2:67547673-67547692 None:intergenic 40.0%
AATTTCCATTAGCTGACGAG+CGG + chr7_2:67547758-67547777 None:intergenic 40.0%
ATGAGTTATGTATCAGTGGC+AGG - chr7_2:67547879-67547898 Msa1071110:intron 40.0%
CAAAACCTAGAGAGAGAAAG+TGG + chr7_2:67547994-67548013 None:intergenic 40.0%
! CACTTTCTCTCTCTAGGTTT+TGG - chr7_2:67547992-67548011 Msa1071110:intron 40.0%
TGCCTTAGAGAGGAAAGATT+GGG + chr7_2:67548055-67548074 None:intergenic 40.0%
ATGCCTTAGAGAGGAAAGAT+TGG + chr7_2:67548056-67548075 None:intergenic 40.0%
AAGACTTTGATGCCTTAGAG+AGG + chr7_2:67548065-67548084 None:intergenic 40.0%
! AGCCACCATATGCATGATTT+TGG + chr7_2:67548088-67548107 None:intergenic 40.0%
AAATCATGCATATGGTGGCT+TGG - chr7_2:67548088-67548107 Msa1071110:CDS 40.0%
!! TGGATTAAAGCTTGGTTTGG+TGG - chr7_2:67548134-67548153 Msa1071110:CDS 40.0%
!! GGATTAAAGCTTGGTTTGGT+GGG - chr7_2:67548135-67548154 Msa1071110:CDS 40.0%
GGAAAGCAAGCAAACATGAT+AGG - chr7_2:67548212-67548231 Msa1071110:intron 40.0%
GAATTTACACAACCCAAGGA+AGG + chr7_2:67548259-67548278 None:intergenic 40.0%
CATGGAATTTACACAACCCA+AGG + chr7_2:67548263-67548282 None:intergenic 40.0%
! GATCGAACTGGACAAGTTTT+GGG - chr7_2:67548425-67548444 Msa1071110:intron 40.0%
TCGCTAATAGCGTAGTTCTT+CGG + chr7_2:67548479-67548498 None:intergenic 40.0%
!! ATTAAGTTGGCCATTCCAGA+GGG + chr7_2:67548564-67548583 None:intergenic 40.0%
!! AATTAAGTTGGCCATTCCAG+AGG + chr7_2:67548565-67548584 None:intergenic 40.0%
CCAACAGGCCAAAATTAAGT+TGG + chr7_2:67548577-67548596 None:intergenic 40.0%
!! CCAACTTAATTTTGGCCTGT+TGG - chr7_2:67548574-67548593 Msa1071110:CDS 40.0%
CATAGCTACCCGAGTAATAT+CGG + chr7_2:67548766-67548785 None:intergenic 40.0%
TGGTTCTCAACACTATGTTG+AGG + chr7_2:67548815-67548834 None:intergenic 40.0%
CCACCTACTTATACTTGTCA+TGG + chr7_2:67549092-67549111 None:intergenic 40.0%
CCATGACAAGTATAAGTAGG+TGG - chr7_2:67549089-67549108 Msa1071110:CDS 40.0%
! TGTCTCTTGTTATCCACATC+AGG - chr7_2:67549114-67549133 Msa1071110:CDS 40.0%
! GTCTCTTGTTATCCACATCA+GGG - chr7_2:67549115-67549134 Msa1071110:CDS 40.0%
! TCTCTTGTTATCCACATCAG+GGG - chr7_2:67549116-67549135 Msa1071110:CDS 40.0%
TACAAGAGGTTCTCGATCTA+AGG - chr7_2:67549141-67549160 Msa1071110:CDS 40.0%
ACAAGAGGTTCTCGATCTAA+GGG - chr7_2:67549142-67549161 Msa1071110:CDS 40.0%
TGTTAATTTCGGTGACATGC+GGG + chr7_2:67549190-67549209 None:intergenic 40.0%
CACCGAAATTAACAAGACGT+AGG - chr7_2:67549196-67549215 Msa1071110:CDS 40.0%
TACGTACATCGGTCATGTAT+GGG - chr7_2:67549325-67549344 Msa1071110:intron 40.0%
! CATGTATGGGATTGATTTCG+GGG - chr7_2:67549338-67549357 Msa1071110:intron 40.0%
! TTCATTTTACGGATAGTCCC+GGG + chr7_2:67549372-67549391 None:intergenic 40.0%
ATTCTAAACCGGACGATTAG+GGG + chr7_2:67549582-67549601 None:intergenic 40.0%
GATTCTAAACCGGACGATTA+GGG + chr7_2:67549583-67549602 None:intergenic 40.0%
ATCATGGCACGATTCTAAAC+CGG + chr7_2:67549593-67549612 None:intergenic 40.0%
TTCACTTCCTATACGTGTCA+TGG + chr7_2:67549685-67549704 None:intergenic 40.0%
ACGGTTGATTATACGTGTGT+GGG + chr7_2:67549773-67549792 None:intergenic 40.0%
GTGTCTACATTACAACCTGA+CGG + chr7_2:67549792-67549811 None:intergenic 40.0%
TTGCCTATAGCCTAGGATTT+AGG - chr7_2:67549839-67549858 Msa1071110:intron 40.0%
TGCCTATAGCCTAGGATTTA+GGG - chr7_2:67549840-67549859 Msa1071110:intron 40.0%
ATGTTATGCATGTTCGTAGC+CGG - chr7_2:67549919-67549938 Msa1071110:CDS 40.0%
CCCTTGAAGTAATATCCATC+CGG + chr7_2:67549941-67549960 None:intergenic 40.0%
CCGGATGGATATTACTTCAA+GGG - chr7_2:67549938-67549957 Msa1071110:CDS 40.0%
! GTCAAGATGCGAGTACTGTT+TGG + chr7_2:67546669-67546688 None:intergenic 45.0%
CTACTGGGGTGATTAACAGA+TGG + chr7_2:67546768-67546787 None:intergenic 45.0%
CAAAGCCTGCAAGATTTCAG+AGG - chr7_2:67547282-67547301 Msa1071110:intron 45.0%
AAGCCTGCAAGATTTCAGAG+GGG - chr7_2:67547284-67547303 Msa1071110:intron 45.0%
GGGAACCTTGTACTACTTGA+AGG - chr7_2:67547526-67547545 Msa1071110:intron 45.0%
ATTTCCATTAGCTGACGAGC+GGG + chr7_2:67547757-67547776 None:intergenic 45.0%
TTAAATGTAGCAGAGGGCTC+AGG - chr7_2:67547785-67547804 Msa1071110:intron 45.0%
GTAAACACGACTGAGACGAA+GGG - chr7_2:67547901-67547920 Msa1071110:intron 45.0%
CTAGAGAGAGAAAGTGGAGT+GGG + chr7_2:67547988-67548007 None:intergenic 45.0%
CCTTAGAGAGGAAAGATTGG+GGG + chr7_2:67548053-67548072 None:intergenic 45.0%
GCCTTAGAGAGGAAAGATTG+GGG + chr7_2:67548054-67548073 None:intergenic 45.0%
CAAAAGCTAGGGTTTGAGCT+TGG - chr7_2:67548182-67548201 Msa1071110:CDS 45.0%
GGATGATTATGGTGCATTGC+AGG - chr7_2:67548403-67548422 Msa1071110:intron 45.0%
! GGATCGAACTGGACAAGTTT+TGG - chr7_2:67548424-67548443 Msa1071110:intron 45.0%
CGCTAATAGCGTAGTTCTTC+GGG + chr7_2:67548478-67548497 None:intergenic 45.0%
ACTTGAGTCGATCCGATTAG+CGG + chr7_2:67549013-67549032 None:intergenic 45.0%
! CTCTTGTTATCCACATCAGG+GGG - chr7_2:67549117-67549136 Msa1071110:CDS 45.0%
CAAGAGGTTCTCGATCTAAG+GGG - chr7_2:67549143-67549162 Msa1071110:CDS 45.0%
CATGACCGATGTACGTACAT+CGG + chr7_2:67549322-67549341 None:intergenic 45.0%
GTACGTACATCGGTCATGTA+TGG - chr7_2:67549324-67549343 Msa1071110:intron 45.0%
ATGATGCCGATGACGATCTT+AGG - chr7_2:67549553-67549572 Msa1071110:intron 45.0%
GGGAAACCTAAGATCGTCAT+CGG + chr7_2:67549562-67549581 None:intergenic 45.0%
TTAGGTTTCCCCTAATCGTC+CGG - chr7_2:67549571-67549590 Msa1071110:intron 45.0%
CGATTCTAAACCGGACGATT+AGG + chr7_2:67549584-67549603 None:intergenic 45.0%
AGAATACGCTCTACGTATCG+AGG + chr7_2:67549630-67549649 None:intergenic 45.0%
CGATACGTAGAGCGTATTCT+TGG - chr7_2:67549630-67549649 Msa1071110:intron 45.0%
AGAGCGTATTCTTGGCATTG+CGG - chr7_2:67549638-67549657 Msa1071110:intron 45.0%
ACTTCCTATACGTGTCATGG+CGG + chr7_2:67549682-67549701 None:intergenic 45.0%
TGGGGACTTGCATACTTAGA+CGG + chr7_2:67549754-67549773 None:intergenic 45.0%
CGGTTGATTATACGTGTGTG+GGG + chr7_2:67549772-67549791 None:intergenic 45.0%
GACGGTTGATTATACGTGTG+TGG + chr7_2:67549774-67549793 None:intergenic 45.0%
CACACGTATAATCAACCGTC+AGG - chr7_2:67549774-67549793 Msa1071110:intron 45.0%
CAGGTTGTAATGTAGACACG+TGG - chr7_2:67549793-67549812 Msa1071110:intron 45.0%
TAGGCTATAGGCAACCTCAA+GGG + chr7_2:67549833-67549852 None:intergenic 45.0%
GCCTATAGCCTAGGATTTAG+GGG - chr7_2:67549841-67549860 Msa1071110:intron 45.0%
TCCCCTAAATCCTAGGCTAT+AGG + chr7_2:67549845-67549864 None:intergenic 45.0%
AGTGAGTTCCCCTAAATCCT+AGG + chr7_2:67549852-67549871 None:intergenic 45.0%
GCCGGATGGATATTACTTCA+AGG - chr7_2:67549937-67549956 Msa1071110:CDS 45.0%
!! ATAATTATATTAAGATAATT+TGG + chr7_2:67546818-67546837 None:intergenic 5.0%
! TGTGGACTGTGTTCCAAGAC+CGG - chr7_2:67546723-67546742 Msa1071110:intron 50.0%
TCTGCGAATATGACCGGTCT+TGG + chr7_2:67546739-67546758 None:intergenic 50.0%
!! ACACCCCTCTGAAATCTTGC+AGG + chr7_2:67547290-67547309 None:intergenic 50.0%
TAGCAGAGGGCTCAGGTTTA+TGG - chr7_2:67547792-67547811 Msa1071110:intron 50.0%
AGAGGGCTCAGGTTTATGGA+AGG - chr7_2:67547796-67547815 Msa1071110:intron 50.0%
GGTAAACACGACTGAGACGA+AGG - chr7_2:67547900-67547919 Msa1071110:intron 50.0%
CCTAGAGAGAGAAAGTGGAG+TGG + chr7_2:67547989-67548008 None:intergenic 50.0%
CCACTCCACTTTCTCTCTCT+AGG - chr7_2:67547986-67548005 Msa1071110:intron 50.0%
TAGAGAGGAAAGATTGGGGG+CGG + chr7_2:67548050-67548069 None:intergenic 50.0%
CCCCCAATCTTTCCTCTCTA+AGG - chr7_2:67548050-67548069 Msa1071110:CDS 50.0%
GGGTTTGAGCTTGGACTTGA+AGG - chr7_2:67548191-67548210 Msa1071110:CDS 50.0%
GGGAACGATTCAAGCCGTAA+GGG - chr7_2:67549163-67549182 Msa1071110:CDS 50.0%
! TGTCTCTTGTTATCCACGCC+AGG - chr7_2:67549225-67549244 Msa1071110:CDS 50.0%
! GTCTCTTGTTATCCACGCCA+GGG - chr7_2:67549226-67549245 Msa1071110:CDS 50.0%
! TCTCTTGTTATCCACGCCAG+GGG - chr7_2:67549227-67549246 Msa1071110:CDS 50.0%
GGAGTCCGATGTACGTACAT+CGG - chr7_2:67549314-67549333 Msa1071110:intron 50.0%
! ATTTTACGGATAGTCCCGGG+TGG + chr7_2:67549369-67549388 None:intergenic 50.0%
TGTAGACACGTGGTGACCTT+AGG - chr7_2:67549803-67549822 Msa1071110:intron 50.0%
TGACCTTAGGTTTCCCCTTG+AGG - chr7_2:67549816-67549835 Msa1071110:intron 50.0%
CAACCTCAAGGGGAAACCTA+AGG + chr7_2:67549822-67549841 None:intergenic 50.0%
AGGCTATAGGCAACCTCAAG+GGG + chr7_2:67549832-67549851 None:intergenic 50.0%
CTAGGCTATAGGCAACCTCA+AGG + chr7_2:67549834-67549853 None:intergenic 50.0%
CTTGAGGTTGCCTATAGCCT+AGG - chr7_2:67549832-67549851 Msa1071110:intron 50.0%
TATGCATGTTCGTAGCCGGA+TGG - chr7_2:67549923-67549942 Msa1071110:CDS 50.0%
!! GGTTGCAACATTCGGTGCGT+TGG + chr7_2:67547479-67547498 None:intergenic 55.0%
ACATCCCGCTCGTCAGCTAA+TGG - chr7_2:67547750-67547769 Msa1071110:intron 55.0%
GGGCTCAGGTTTATGGAAGG+TGG - chr7_2:67547799-67547818 Msa1071110:intron 55.0%
GGCGGTTCATAGAGAGAAGG+AGG + chr7_2:67548032-67548051 None:intergenic 55.0%
GGTGCATTGCAGGATCGAAC+TGG - chr7_2:67548413-67548432 Msa1071110:intron 55.0%
AGCGTAGTTCTTCGGGTCTG+TGG + chr7_2:67548471-67548490 None:intergenic 55.0%
! ATTAGCGCAGCCCTCTGGAA+TGG - chr7_2:67548551-67548570 Msa1071110:CDS 55.0%
CCTCTTGTATCCCCCTGATG+TGG + chr7_2:67549130-67549149 None:intergenic 55.0%
CCACATCAGGGGGATACAAG+AGG - chr7_2:67549127-67549146 Msa1071110:CDS 55.0%
GGGGAACGATTCAAGCCGTA+AGG - chr7_2:67549162-67549181 Msa1071110:CDS 55.0%
! CTCTTGTTATCCACGCCAGG+GGG - chr7_2:67549228-67549247 Msa1071110:CDS 55.0%
TTATCCACGCCAGGGGGATA+CGG - chr7_2:67549234-67549253 Msa1071110:CDS 55.0%
TACGGGAGGTTCTCGACCTA+AGG - chr7_2:67549252-67549271 Msa1071110:intron 55.0%
ACGGGAGGTTCTCGACCTAA+GGG - chr7_2:67549253-67549272 Msa1071110:intron 55.0%
GGTTCTCGACCTAAGGGGAA+CGG - chr7_2:67549259-67549278 Msa1071110:intron 55.0%
GTACGTACATCGGACTCCCT+CGG + chr7_2:67549312-67549331 None:intergenic 55.0%
GATTTCGGGGTTACTCCACC+CGG - chr7_2:67549351-67549370 Msa1071110:intron 55.0%
ATTTCGGGGTTACTCCACCC+GGG - chr7_2:67549352-67549371 Msa1071110:intron 55.0%
ATACGTGTCATGGCGGCCAA+GGG + chr7_2:67549675-67549694 None:intergenic 55.0%
TATACGTGTCATGGCGGCCA+AGG + chr7_2:67549676-67549695 None:intergenic 55.0%
TTGGCCGCCATGACACGTAT+AGG - chr7_2:67549675-67549694 Msa1071110:intron 55.0%
GGGTTCGTTCGTAAAGCTGC+AGG - chr7_2:67549958-67549977 Msa1071110:CDS 55.0%
CGTAAAGCTGCAGGACGATG+AGG - chr7_2:67549967-67549986 Msa1071110:CDS 55.0%
GGGGGCGGTTCATAGAGAGA+AGG + chr7_2:67548035-67548054 None:intergenic 60.0%
! CCTGGAGCGTGGCTTTTCTG+GGG + chr7_2:67548525-67548544 None:intergenic 60.0%
! CCCTGGAGCGTGGCTTTTCT+GGG + chr7_2:67548526-67548545 None:intergenic 60.0%
CCCAGAAAAGCCACGCTCCA+GGG - chr7_2:67548523-67548542 Msa1071110:intron 60.0%
CCAGAAAAGCCACGCTCCAG+GGG - chr7_2:67548524-67548543 Msa1071110:intron 60.0%
! CGGATCGACTCAAGTGTCCG+AGG - chr7_2:67549018-67549037 Msa1071110:CDS 60.0%
GGTGACATGCGGGTCCCTTA+CGG + chr7_2:67549180-67549199 None:intergenic 60.0%
TATCCACGCCAGGGGGATAC+GGG - chr7_2:67549235-67549254 Msa1071110:CDS 60.0%
CGGGAGGTTCTCGACCTAAG+GGG - chr7_2:67549254-67549273 Msa1071110:intron 60.0%
CGGCTTGAACCGTTCCCCTT+AGG + chr7_2:67549271-67549290 None:intergenic 60.0%
GGGAACGGTTCAAGCCGCAA+GGG - chr7_2:67549274-67549293 Msa1071110:intron 60.0%
TGCGGTCCTAGATTCCCCCT+TGG - chr7_2:67549656-67549675 Msa1071110:intron 60.0%
TACGTGTCATGGCGGCCAAG+GGG + chr7_2:67549674-67549693 None:intergenic 60.0%
CCCCAGAAAAGCCACGCTCC+AGG - chr7_2:67548522-67548541 Msa1071110:intron 65.0%
! CCCCTGGAGCGTGGCTTTTC+TGG + chr7_2:67548527-67548546 None:intergenic 65.0%
CTAATAGCGCCCCTGGAGCG+TGG + chr7_2:67548536-67548555 None:intergenic 65.0%
GCGCTATTAGCGCAGCCCTC+TGG - chr7_2:67548546-67548565 Msa1071110:CDS 65.0%
TTGGCCTGTTGGGCCTCCCT+CGG - chr7_2:67548585-67548604 Msa1071110:CDS 65.0%
GGAACGCACTACCGACCCGA+GGG + chr7_2:67548604-67548623 None:intergenic 65.0%
GAGAACCTCCCGTATCCCCC+TGG + chr7_2:67549246-67549265 None:intergenic 65.0%
GGGGAACGGTTCAAGCCGCA+AGG - chr7_2:67549273-67549292 Msa1071110:intron 65.0%
TGGCGGCCAAGGGGGAATCT+AGG + chr7_2:67549665-67549684 None:intergenic 65.0%
ACGTGTCATGGCGGCCAAGG+GGG + chr7_2:67549673-67549692 None:intergenic 65.0%
GGCTGCGCTAATAGCGCCCC+TGG + chr7_2:67548543-67548562 None:intergenic 70.0%
TGGCCTGTTGGGCCTCCCTC+GGG - chr7_2:67548586-67548605 Msa1071110:CDS 70.0%
CTGTTGGGCCTCCCTCGGGT+CGG - chr7_2:67548590-67548609 Msa1071110:CDS 70.0%
ACGCACTACCGACCCGAGGG+AGG + chr7_2:67548601-67548620 None:intergenic 70.0%
CGGAACGCACTACCGACCCG+AGG + chr7_2:67548605-67548624 None:intergenic 70.0%
! GGTGTCGTGCGGGTCCCTTG+CGG + chr7_2:67549291-67549310 None:intergenic 70.0%
AAGGGACCCGCACGACACCG+AGG - chr7_2:67549292-67549311 Msa1071110:intron 70.0%
AGGGACCCGCACGACACCGA+GGG - chr7_2:67549293-67549312 Msa1071110:intron 70.0%
!! GGACTCCCTCGGTGTCGTGC+GGG + chr7_2:67549301-67549320 None:intergenic 70.0%
!! CGGACTCCCTCGGTGTCGTG+CGG + chr7_2:67549302-67549321 None:intergenic 70.0%
CGACCCGAGGGAGGCCCAAC+AGG + chr7_2:67548592-67548611 None:intergenic 75.0%
CCTCCCGTATCCCCCTGGCG+TGG + chr7_2:67549241-67549260 None:intergenic 75.0%
CCACGCCAGGGGGATACGGG+AGG - chr7_2:67549238-67549257 Msa1071110:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 67546642 67549997 67546642 ID=Msa1071110;Name=Msa1071110
chr7_2 mRNA 67546642 67549997 67546642 ID=Msa1071110-mRNA-1;Parent=Msa1071110;Name=Msa1071110-mRNA-1;_AED=0.71;_eAED=0.71;_QI=0|0|0|0.16|1|1|6|0|311
chr7_2 exon 67549869 67549997 67549869 ID=Msa1071110-mRNA-1:exon:14643;Parent=Msa1071110-mRNA-1
chr7_2 exon 67548893 67549260 67548893 ID=Msa1071110-mRNA-1:exon:14642;Parent=Msa1071110-mRNA-1
chr7_2 exon 67548530 67548631 67548530 ID=Msa1071110-mRNA-1:exon:14641;Parent=Msa1071110-mRNA-1
chr7_2 exon 67548032 67548214 67548032 ID=Msa1071110-mRNA-1:exon:14640;Parent=Msa1071110-mRNA-1
chr7_2 exon 67547299 67547392 67547299 ID=Msa1071110-mRNA-1:exon:14639;Parent=Msa1071110-mRNA-1
chr7_2 exon 67546642 67546701 67546642 ID=Msa1071110-mRNA-1:exon:14638;Parent=Msa1071110-mRNA-1
chr7_2 CDS 67549869 67549997 67549869 ID=Msa1071110-mRNA-1:cds;Parent=Msa1071110-mRNA-1
chr7_2 CDS 67548893 67549260 67548893 ID=Msa1071110-mRNA-1:cds;Parent=Msa1071110-mRNA-1
chr7_2 CDS 67548530 67548631 67548530 ID=Msa1071110-mRNA-1:cds;Parent=Msa1071110-mRNA-1
chr7_2 CDS 67548032 67548214 67548032 ID=Msa1071110-mRNA-1:cds;Parent=Msa1071110-mRNA-1
chr7_2 CDS 67547299 67547392 67547299 ID=Msa1071110-mRNA-1:cds;Parent=Msa1071110-mRNA-1
chr7_2 CDS 67546642 67546701 67546642 ID=Msa1071110-mRNA-1:cds;Parent=Msa1071110-mRNA-1
Gene Sequence

>Msa1071110

ATGCGAAGATTAAAGAAAGGTCATCCAAACAGTACTCGCATCTTGACTGAAATGGATGTTGTGGAAAAAGCACCGAGAAAATGTGGACTGTGTTCCAAGACCGGTCATATTCGCAGAAACTGTCCATCTGGGCAGACTTATCAATTTTCTTCTGGTGTTGTTAAAATATCTGATAATGGTAATGATCTTGTGGTATTGAATGGAAAGAAAGAGGTGATTTGGACATCCAACGCACCGAATGTTGCAACCAATTCAAGTTCGAAACTTTTAGATTCAGGGAACCTTGTACTACTTGAAGGCACAACAGAAAGAACTATATGGGAGAGTTTCCAGCATCCTTCAAATGTAATGTTGCCAAACATGAAACTTACAAGCAACAAAATAACAGGTGAGAAAGTAAAACAAACATCATGGAAAACACCTTATGATCCATCCATTGGAAGCTTCTTTTTGAGTGTTGAAAGGCTTACTATACCTGAAGTGTTCATATGGAATGTGTTTTGGGAAGAAAATTCTCTCCTCCTTCTCTCTATGAACCGCCCCCAATCTTTCCTCTCTAAGGCATCAAAGTCTTCCAAAATCATGCATATGGTGGCTTGGATCGAACTGGACAAGTTTTGGGTAAAAATTGGAAATTTGGTACCACAGACCCGAAGAACTACGCTATTAGCGAAATTCTACGCTAATAGCGTAGCTCCCCAGAAAAGCCACGCTCCAGGGGCGCTATTAGCGCAGCCCTCTGGAATGGCCAACTTAATTTTGGCCTGTTGGGCCTCCCTCGGGGGGATACGGGAGGTTCTCGACCTAAGGGGAACGGTTCAAGCCGCAAGGGACCCGCACGACACCGAGGGAGTCCGATGTACGTACATCGGTCATCCGGATGGATATTACTTCAAGGGTTCGTTCGTAAAGCTGCAGGACGATGAGGACATCTAG
Protein sequence

>Msa1071110

MRRLKKGHPNSTRILTEMDVVEKAPRKCGLCSKTGHIRRNCPSGQTYQFSSGVVKISDNGNDLVVLNGKKEVIWTSNAPNVATNSSSKLLDSGNLVLLEGTTERTIWESFQHPSNVMLPNMKLTSNKITGEKVKQTSWKTPYDPSIGSFFLSVERLTIPEVFIWNVFWEENSLLLLSMNRPQSFLSKASKSSKIMHMVAWIELDKFWVKIGNLVPQTRRTTLLAKFYANSVAPQKSHAPGALLAQPSGMANLILACWASLGGIREVLDLRGTVQAARDPHDTEGVRCTYIGHPDGYYFKGSFVKLQDDEDI*