AlfalfaGEDB | Msa1015800

M. sativa cultivar zhongmu-4 / Msa1015800

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015800	RHN45871.1	95.041	121	6	0	45	165	84	204	2.29e-67	228

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015800	sp\|Q9LPZ9\|SD113_ARATH	45.000	120	59	4	50	164	84	201	4.82e-24	100

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015800	A0A396H073	95.041	121	6	0	45	165	84	204	1.10e-67	228

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0612930	Msa1015800	0.803638	3.168687e-49	-8.615850e-47
Msa0647830	Msa1015800	0.801292	9.646840e-49	-8.615850e-47
Msa0672690	Msa1015800	0.806065	9.859453e-50	-8.615850e-47
Msa0688070	Msa1015800	0.810883	9.237896e-51	-8.615850e-47
Msa0690440	Msa1015800	0.807383	5.193358e-50	-8.615850e-47
Msa0693380	Msa1015800	0.805462	1.319657e-49	-8.615850e-47
Msa0716530	Msa1015800	0.801968	7.009240e-49	-8.615850e-47
Msa0753720	Msa1015800	0.800527	1.382310e-48	-8.615850e-47
Msa0764960	Msa1015800	0.810775	9.745752e-51	-8.615850e-47
Msa0766630	Msa1015800	0.802859	4.593308e-49	-8.615850e-47
Msa0789250	Msa1015800	0.817365	3.425422e-52	-8.615850e-47
Msa0188830	Msa1015800	0.806703	7.230576e-50	-8.615850e-47
Msa0220580	Msa1015800	0.809070	2.268688e-50	-8.615850e-47
Msa0233300	Msa1015800	0.804713	1.892478e-49	-8.615850e-47
Msa0376590	Msa1015800	0.821241	4.483878e-53	-8.615850e-47
Msa0379640	Msa1015800	0.810296	1.237165e-50	-8.615850e-47
Msa0417100	Msa1015800	0.800844	1.190910e-48	-8.615850e-47
Msa0475490	Msa1015800	0.808208	3.467298e-50	-8.615850e-47
Msa1015730	Msa1015800	0.862196	6.012424e-64	-8.615850e-47
Msa1015790	Msa1015800	0.885998	5.010677e-72	-8.615850e-47
Msa1015800	Msa1015810	0.873799	1.111135e-67	-8.615850e-47
Msa1015800	Msa1015840	0.809866	1.531085e-50	-8.615850e-47
Msa1015800	Msa1024360	0.904289	1.433091e-79	-8.615850e-47
Msa1015800	Msa1059570	0.882267	1.202415e-70	-8.615850e-47
Msa1015800	Msa1059750	0.869994	2.038969e-66	-8.615850e-47
Msa1015800	Msa1068200	-0.813609	2.347113e-51	-8.615850e-47
Msa1015800	Msa1071070	0.803766	2.980372e-49	-8.615850e-47
Msa1015800	Msa1071100	0.829564	4.798233e-55	-8.615850e-47
Msa1015800	Msa1071110	0.928748	1.860348e-92	-8.615850e-47
Msa1015800	Msa1075080	-0.819407	1.180599e-52	-8.615850e-47
Msa1015800	Msa1075220	-0.804213	2.406871e-49	-8.615850e-47
Msa1015800	Msa1082500	0.819055	1.419443e-52	-8.615850e-47
Msa1015800	Msa1084260	0.823010	1.743450e-53	-8.615850e-47
Msa1015800	Msa1098400	0.808284	3.340934e-50	-8.615850e-47
Msa1015800	Msa1104610	0.826533	2.574488e-54	-8.615850e-47
Msa1015800	Msa1104630	0.862108	6.400743e-64	-8.615850e-47
Msa1015800	Msa1137850	0.804475	2.122578e-49	-8.615850e-47
Msa1015800	Msa1148020	0.812900	3.358623e-51	-8.615850e-47
Msa1015800	Msa1148050	0.860362	2.178489e-63	-8.615850e-47
Msa1015800	Msa1156340	-0.811802	5.833913e-51	-8.615850e-47
Msa1015800	Msa1160670	0.816879	4.404645e-52	-8.615850e-47
Msa1015800	Msa1162550	-0.803963	2.711860e-49	-8.615850e-47
Msa1015800	Msa1224480	0.814387	1.580866e-51	-8.615850e-47
Msa1015800	Msa1233890	0.805799	1.120922e-49	-8.615850e-47
Msa1015800	Msa1239720	0.825336	4.956311e-54	-8.615850e-47
Msa1015800	Msa1246500	0.801217	9.992830e-49	-8.615850e-47
Msa1015800	Msa1288340	0.812924	3.318656e-51	-8.615850e-47
Msa1015800	Msa1306850	0.824092	9.734826e-54	-8.615850e-47
Msa1015800	Msa1329700	0.815596	8.527279e-52	-8.615850e-47
Msa1015800	Msa1359040	0.810950	8.933253e-51	-8.615850e-47
Msa1015800	Msa1411020	0.811879	5.613731e-51	-8.615850e-47
Msa1015800	Msa1424290	0.811237	7.741737e-51	-8.615850e-47
Msa1015800	Msa1425100	0.814295	1.657065e-51	-8.615850e-47
Msa1015800	Msa1427230	0.801748	7.776980e-49	-8.615850e-47
Msa1015800	Msa1429900	0.801027	1.092834e-48	-8.615850e-47
Msa1015800	Msa1434350	0.807636	4.588937e-50	-8.615850e-47
Msa1015800	Msa1439320	0.813761	2.173651e-51	-8.615850e-47
Msa1015800	Msa1451620	-0.833830	4.256243e-56	-8.615850e-47
Msa1015800	Msa1453560	0.802870	4.568906e-49	-8.615850e-47
Msa0266690	Msa1015800	0.852648	4.020523e-61	-8.615850e-47
Msa0266720	Msa1015800	0.859955	2.890130e-63	-8.615850e-47
Msa0288100	Msa1015800	0.809386	1.941432e-50	-8.615850e-47
Msa0354800	Msa1015800	-0.803220	3.868724e-49	-8.615850e-47
Msa0484780	Msa1015800	0.815958	7.078619e-52	-8.615850e-47
Msa0512900	Msa1015800	0.834400	3.063380e-56	-8.615850e-47
Msa0516370	Msa1015800	0.816637	4.990244e-52	-8.615850e-47
Msa0553460	Msa1015800	0.803181	3.940831e-49	-8.615850e-47
Msa0555020	Msa1015800	0.802340	5.877230e-49	-8.615850e-47
Msa0887990	Msa1015800	0.809881	1.519982e-50	-8.615850e-47
Msa0894720	Msa1015800	0.818195	2.225274e-52	-8.615850e-47
Msa0907070	Msa1015800	0.814092	1.836671e-51	-8.615850e-47
Msa0931520	Msa1015800	0.805653	1.203094e-49	-8.615850e-47
Msa0969520	Msa1015800	0.814084	1.844264e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015800	MtrunA17_Chr7g0236161	95.041	121	6	0	45	165	84	204	2.11e-71	228
Msa1015800	MtrunA17_Chr7g0236201	95.041	121	6	0	45	165	84	204	3.54e-71	228
Msa1015800	MtrunA17_Chr7g0236121	95.041	121	6	0	45	165	84	204	4.80e-71	228
Msa1015800	MtrunA17_Chr2g0280841	58.333	120	48	1	48	165	89	208	1.10e-41	144
Msa1015800	MtrunA17_Chr2g0280791	56.667	120	50	1	48	165	83	202	5.90e-39	140
Msa1015800	MtrunA17_Chr7g0236511	58.120	117	47	2	50	165	93	208	3.11e-37	135
Msa1015800	MtrunA17_Chr7g0236651	58.974	117	46	2	50	165	85	200	4.57e-37	134
Msa1015800	MtrunA17_Chr7g0236521	58.974	117	46	2	50	165	67	182	1.03e-36	130
Msa1015800	MtrunA17_Chr4g0055021	55.932	118	49	3	50	165	87	203	3.58e-36	129
Msa1015800	MtrunA17_Chr7g0236551	58.120	117	47	2	50	165	87	202	4.44e-36	132
Msa1015800	MtrunA17_Chr7g0236561	55.469	128	51	3	39	165	60	182	6.73e-36	131
Msa1015800	MtrunA17_Chr2g0280801	56.557	122	49	1	48	165	88	209	7.78e-36	131
Msa1015800	MtrunA17_Chr7g0236641	55.556	117	50	2	50	165	87	202	9.36e-36	131
Msa1015800	MtrunA17_Chr7g0236691	58.120	117	47	2	50	165	87	202	7.37e-35	128
Msa1015800	MtrunA17_Chr2g0280771	52.459	122	54	1	48	165	80	201	4.99e-32	120
Msa1015800	MtrunA17_Chr7g0236591	53.782	119	51	3	50	165	114	231	2.03e-31	114
Msa1015800	MtrunA17_Chr7g0236341	54.701	117	51	2	50	165	87	202	3.17e-31	118
Msa1015800	MtrunA17_Chr7g0236231	56.522	115	42	3	50	163	97	204	4.01e-31	117
Msa1015800	MtrunA17_Chr2g0280781	50.820	122	54	2	48	165	79	198	6.23e-31	117
Msa1015800	MtrunA17_Chr8g0340081	47.500	120	62	1	45	164	86	204	1.92e-24	99.0
Msa1015800	MtrunA17_Chr8g0340071	45.833	120	64	1	45	164	84	202	2.83e-24	98.2
Msa1015800	MtrunA17_Chr8g0340061	45.000	120	65	1	45	164	84	202	2.85e-23	95.1
Msa1015800	MtrunA17_Chr3g0084451	39.024	123	70	2	39	161	84	201	1.11e-22	93.6
Msa1015800	MtrunA17_Chr8g0340091	42.500	120	68	1	45	164	137	255	2.03e-22	92.8
Msa1015800	MtrunA17_Chr3g0084621	40.708	113	65	2	50	161	91	202	2.12e-22	92.8
Msa1015800	MtrunA17_Chr2g0280691	40.833	120	66	3	50	165	87	205	4.39e-21	89.0
Msa1015800	MtrunA17_Chr8g0361261	40.351	114	64	3	52	163	120	231	4.62e-21	89.0
Msa1015800	MtrunA17_Chr3g0084441	41.085	129	65	4	39	161	84	207	5.42e-21	89.0
Msa1015800	MtrunA17_Chr3g0084431	40.310	129	66	4	39	161	84	207	1.25e-20	87.8
Msa1015800	MtrunA17_Chr3g0098791	37.984	129	71	3	39	163	86	209	1.42e-20	87.4
Msa1015800	MtrunA17_Chr3g0084491	37.097	124	72	3	39	161	97	215	1.72e-20	87.4
Msa1015800	MtrunA17_Chr8g0361301	40.351	114	64	3	52	163	89	200	1.82e-20	87.4
Msa1015800	MtrunA17_Chr8g0340111	42.623	122	67	2	45	164	85	205	2.24e-20	87.0
Msa1015800	MtrunA17_Chr3g0084691	37.903	124	71	3	39	161	84	202	1.30e-19	85.1
Msa1015800	MtrunA17_Chr3g0084681	40.351	114	64	3	50	160	91	203	2.12e-19	84.3
Msa1015800	MtrunA17_Chr3g0084421	38.583	127	70	4	39	162	43	164	2.52e-19	84.0
Msa1015800	MtrunA17_Chr8g0361441	38.462	117	67	2	50	163	90	204	6.85e-19	82.8
Msa1015800	MtrunA17_Chr3g0084411	38.095	126	70	4	39	161	81	201	1.12e-18	82.4
Msa1015800	MtrunA17_Chr2g0318831	34.921	126	76	3	39	163	81	201	1.66e-18	81.6
Msa1015800	MtrunA17_Chr2g0280681	38.532	109	64	1	58	163	97	205	2.39e-18	81.3
Msa1015800	MtrunA17_Chr3g0084651	38.525	122	68	3	48	163	86	206	4.14e-18	80.5
Msa1015800	MtrunA17_Chr8g0361311	40.517	116	64	4	51	163	87	200	5.20e-18	80.1
Msa1015800	MtrunA17_Chr2g0318811	34.921	126	76	3	39	163	78	198	5.59e-18	80.1
Msa1015800	MtrunA17_Chr4g0048631	36.765	136	72	5	39	165	81	211	7.09e-18	80.1
Msa1015800	MtrunA17_Chr4g0048581	35.652	115	70	3	52	163	95	208	9.27e-18	79.7
Msa1015800	MtrunA17_Chr2g0280701	40.678	118	65	3	50	163	85	201	1.92e-17	78.6
Msa1015800	MtrunA17_Chr8g0361251	39.655	116	65	4	51	163	87	200	4.52e-17	77.8
Msa1015800	MtrunA17_Chr4g0048741	36.364	121	72	1	50	165	103	223	8.02e-17	77.0
Msa1015800	MtrunA17_Chr4g0048721	35.246	122	73	2	50	165	92	213	1.12e-16	76.3
Msa1015800	MtrunA17_Chr4g0048691	32.787	122	76	1	50	165	108	229	3.20e-16	75.1
Msa1015800	MtrunA17_Chr4g0048641	33.884	121	75	1	50	165	110	230	3.32e-16	75.1
Msa1015800	MtrunA17_Chr8g0361431	38.182	110	66	2	56	164	105	213	6.24e-16	74.3
Msa1015800	MtrunA17_Chr4g0048801	38.542	96	55	2	73	165	112	206	6.78e-16	74.3
Msa1015800	MtrunA17_Chr5g0428101	36.607	112	67	2	56	164	97	207	1.20e-15	73.6
Msa1015800	MtrunA17_Chr4g0048761	36.585	123	69	3	50	165	103	223	1.46e-15	73.2
Msa1015800	MtrunA17_Chr2g0280751	38.136	118	61	6	52	164	99	209	2.42e-15	72.8
Msa1015800	MtrunA17_Chr4g0048651	34.328	134	75	5	39	165	101	228	4.32e-15	71.6
Msa1015800	MtrunA17_Chr4g0042351	32.456	114	75	1	50	163	87	198	7.35e-15	71.2
Msa1015800	MtrunA17_Chr2g0280711	35.000	120	69	4	54	165	93	211	2.86e-14	69.7
Msa1015800	MtrunA17_Chr2g0318841	32.540	126	79	3	39	163	78	198	3.87e-14	69.3
Msa1015800	MtrunA17_Chr4g0042421	37.209	129	74	5	39	163	78	203	4.08e-14	68.9
Msa1015800	MtrunA17_Chr8g0361151	33.645	107	71	0	48	154	93	199	5.44e-14	68.6
Msa1015800	MtrunA17_Chr8g0360201	39.241	79	48	0	76	154	9	87	6.26e-14	68.6
Msa1015800	MtrunA17_Chr5g0422921	36.885	122	67	4	50	164	81	199	7.15e-14	68.6
Msa1015800	MtrunA17_Chr2g0280731	37.838	111	60	4	52	159	95	199	1.10e-13	67.8
Msa1015800	MtrunA17_Chr4g0042361	30.702	114	77	1	52	165	123	234	3.44e-13	66.2
Msa1015800	MtrunA17_Chr2g0323241	38.614	101	52	4	50	149	93	184	3.88e-13	66.2
Msa1015800	MtrunA17_Chr4g0033911	70.213	47	10	2	1	43	179	225	3.90e-13	66.2
Msa1015800	MtrunA17_Chr4g0042381	31.304	115	76	2	50	163	86	198	5.12e-13	65.9
Msa1015800	MtrunA17_Chr4g0042441	37.288	118	69	3	50	163	88	204	7.96e-13	65.5
Msa1015800	MtrunA17_Chr4g0042391	28.030	132	88	1	39	163	67	198	1.59e-12	64.3
Msa1015800	MtrunA17_Chr8g0361141	33.333	114	69	3	46	154	90	201	2.34e-12	63.9
Msa1015800	MtrunA17_Chr4g0042401	34.375	128	77	3	39	163	80	203	8.34e-12	62.4
Msa1015800	MtrunA17_Chr3g0093161	34.615	104	67	1	62	164	95	198	8.99e-12	62.4
Msa1015800	MtrunA17_Chr4g0023071	35.652	115	67	5	56	165	96	208	9.36e-12	62.4
Msa1015800	MtrunA17_Chr4g0042341	30.833	120	73	3	52	165	88	203	1.56e-11	61.6
Msa1015800	MtrunA17_Chr5g0428111	33.333	111	70	2	56	163	98	207	1.99e-11	61.2
Msa1015800	MtrunA17_Chr2g0323301	36.364	121	68	6	51	165	91	208	3.72e-11	60.5
Msa1015800	MtrunA17_Chr1g0191111	35.514	107	57	3	51	154	109	206	8.43e-11	58.9
Msa1015800	MtrunA17_Chr7g0236571	57.895	57	19	2	110	165	2	54	8.89e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015800	AT1G11350.1	45.000	120	59	4	50	164	84	201	4.90e-25	100
Msa1015800	AT1G11300.2	45.299	117	60	3	50	163	89	204	5.07e-25	100
Msa1015800	AT1G11300.1	45.299	117	60	3	50	163	89	204	5.71e-25	100
Msa1015800	AT4G21390.1	41.880	117	64	2	51	164	92	207	1.65e-23	96.7
Msa1015800	AT4G21390.2	41.880	117	64	2	51	164	92	207	2.07e-23	96.3
Msa1015800	AT1G11303.1	43.697	119	63	3	50	165	89	206	2.20e-23	96.3
Msa1015800	AT1G11280.3	42.593	108	57	3	54	161	93	195	4.62e-20	86.7
Msa1015800	AT1G11280.2	42.593	108	57	3	54	161	93	195	4.67e-20	86.7
Msa1015800	AT1G11280.4	42.593	108	57	3	54	161	103	205	4.85e-20	86.7
Msa1015800	AT1G11280.1	42.593	108	57	3	54	161	103	205	4.96e-20	86.7
Msa1015800	AT1G11280.5	42.593	108	57	3	54	161	93	195	5.12e-20	86.3
Msa1015800	AT1G61420.1	41.346	104	60	1	50	153	85	187	5.28e-20	86.3
Msa1015800	AT1G61420.2	41.346	104	60	1	50	153	85	187	5.60e-20	86.3
Msa1015800	AT1G61420.4	41.346	104	60	1	50	153	85	187	5.60e-20	86.3
Msa1015800	AT1G61400.2	42.857	112	59	2	50	161	95	201	1.47e-19	85.1
Msa1015800	AT1G61400.1	42.857	112	59	2	50	161	95	201	1.54e-19	85.1
Msa1015800	AT1G11330.3	38.983	118	68	4	50	164	96	212	2.93e-19	84.3
Msa1015800	AT1G11330.1	38.983	118	68	4	50	164	96	212	2.96e-19	84.3
Msa1015800	AT1G11330.2	38.983	118	68	4	50	164	96	212	3.07e-19	84.3
Msa1015800	AT1G61490.4	47.525	101	50	3	50	149	85	183	6.41e-19	83.2
Msa1015800	AT1G61490.1	47.525	101	50	3	50	149	85	183	6.41e-19	83.2
Msa1015800	AT1G61490.2	47.525	101	50	3	50	149	85	183	6.41e-19	83.2
Msa1015800	AT1G61490.5	47.525	101	50	3	50	149	85	183	6.41e-19	83.2
Msa1015800	AT1G61490.6	47.525	101	50	3	50	149	85	183	7.16e-19	83.2
Msa1015800	AT1G61490.7	47.525	101	50	3	50	149	85	183	7.16e-19	83.2
Msa1015800	AT1G11410.4	36.441	118	72	2	50	164	91	208	1.66e-18	82.0
Msa1015800	AT1G11410.1	36.441	118	72	2	50	164	84	201	1.79e-18	82.0
Msa1015800	AT1G11410.3	36.441	118	72	2	50	164	60	177	1.89e-18	82.0
Msa1015800	AT1G61440.2	38.462	104	63	1	50	153	78	180	2.19e-18	81.6
Msa1015800	AT1G61440.3	38.462	104	63	1	50	153	78	180	2.31e-18	81.6
Msa1015800	AT1G61440.1	38.462	104	63	1	50	153	78	180	2.40e-18	81.6
Msa1015800	AT1G61610.1	35.965	114	71	2	52	164	93	205	2.49e-18	81.6
Msa1015800	AT1G61610.2	35.965	114	71	2	52	164	93	205	3.17e-18	81.3
Msa1015800	AT4G21380.2	38.017	121	68	3	50	165	93	211	8.32e-18	80.1
Msa1015800	AT4G21380.1	38.017	121	68	3	50	165	93	211	9.15e-18	80.1
Msa1015800	AT1G11340.2	35.593	118	73	2	50	164	149	266	9.79e-18	79.7
Msa1015800	AT1G11340.1	35.593	118	73	2	50	164	81	198	1.04e-17	79.7
Msa1015800	AT1G11340.3	35.593	118	73	2	50	164	149	266	1.05e-17	79.7
Msa1015800	AT1G61460.1	38.462	104	63	1	50	153	86	188	1.78e-17	79.3
Msa1015800	AT1G61430.8	39.000	100	60	1	50	149	85	183	3.00e-17	78.6
Msa1015800	AT1G61430.7	39.000	100	60	1	50	149	85	183	3.00e-17	78.6
Msa1015800	AT1G61430.5	39.000	100	60	1	50	149	85	183	3.03e-17	78.6
Msa1015800	AT1G61430.10	39.000	100	60	1	50	149	62	160	3.20e-17	78.6
Msa1015800	AT1G61430.9	39.000	100	60	1	50	149	85	183	3.60e-17	78.2
Msa1015800	AT1G61430.1	39.000	100	60	1	50	149	85	183	3.74e-17	78.2
Msa1015800	AT1G61430.11	39.000	100	60	1	50	149	62	160	3.79e-17	78.2
Msa1015800	AT1G61430.12	39.000	100	60	1	50	149	62	160	3.79e-17	78.2
Msa1015800	AT1G61430.13	39.000	100	60	1	50	149	62	160	3.79e-17	78.2
Msa1015800	AT1G61430.2	39.000	100	60	1	50	149	85	183	3.92e-17	78.2
Msa1015800	AT1G61430.6	39.000	100	60	1	50	149	85	183	3.92e-17	78.2
Msa1015800	AT1G61430.4	39.000	100	60	1	50	149	62	160	4.15e-17	78.2
Msa1015800	AT1G61380.1	36.538	104	65	1	50	153	82	184	4.32e-17	78.2
Msa1015800	AT1G61430.3	39.000	100	60	1	50	149	94	192	4.46e-17	77.8
Msa1015800	AT1G61480.1	39.423	104	62	1	50	153	85	187	5.66e-17	77.8
Msa1015800	AT1G61550.1	36.364	110	69	1	54	163	84	192	2.88e-16	75.9
Msa1015800	AT1G65790.3	37.069	116	68	3	50	163	91	203	9.94e-16	73.9
Msa1015800	AT1G65790.2	37.069	116	68	3	50	163	91	203	9.94e-16	73.9
Msa1015800	AT1G65790.1	37.069	116	68	3	50	163	91	203	1.00e-15	74.3
Msa1015800	AT3G12000.1	33.613	119	73	3	50	164	100	216	2.18e-15	72.8
Msa1015800	AT1G61360.2	36.000	100	63	1	54	153	4	102	6.92e-15	71.6
Msa1015800	AT1G61360.3	36.000	100	63	1	54	153	4	102	6.92e-15	71.6
Msa1015800	AT1G61360.4	36.000	100	63	1	54	153	4	102	6.92e-15	71.6
Msa1015800	AT1G61360.1	36.000	100	63	1	54	153	85	183	7.67e-15	71.6
Msa1015800	AT1G61390.1	33.636	110	72	1	54	163	107	215	8.87e-15	71.2
Msa1015800	AT1G11410.2	41.026	78	46	0	87	164	9	86	1.16e-14	70.9
Msa1015800	AT1G61500.3	39.286	84	51	0	67	150	107	190	9.22e-14	68.6
Msa1015800	AT1G61500.1	39.286	84	51	0	67	150	102	185	9.39e-14	68.6
Msa1015800	AT1G61500.2	39.286	84	51	0	67	150	84	167	9.54e-14	68.6
Msa1015800	AT1G61370.1	32.727	110	73	1	54	163	90	198	1.02e-13	68.2
Msa1015800	AT4G27290.1	32.773	119	73	3	51	163	87	204	1.35e-13	68.2
Msa1015800	AT4G27290.2	32.773	119	73	3	51	163	87	204	1.55e-13	67.8
Msa1015800	AT2G19130.1	37.190	121	67	6	51	165	86	203	2.09e-13	67.4
Msa1015800	AT3G16030.7	38.182	110	58	3	58	158	104	212	4.27e-13	66.6
Msa1015800	AT3G16030.4	38.182	110	58	3	58	158	104	212	4.67e-13	66.2
Msa1015800	AT3G16030.3	38.182	110	58	3	58	158	104	212	4.95e-13	66.2
Msa1015800	AT3G16030.8	38.182	110	58	3	58	158	104	212	4.95e-13	66.2
Msa1015800	AT3G16030.5	38.182	110	58	3	58	158	104	212	4.95e-13	66.2
Msa1015800	AT3G16030.6	38.182	110	58	3	58	158	104	212	5.19e-13	66.2
Msa1015800	AT3G16030.1	38.182	110	58	3	58	158	93	201	5.64e-13	66.2
Msa1015800	AT5G18470.1	34.454	119	69	3	50	164	107	220	7.74e-12	62.8
Msa1015800	AT4G27300.1	33.613	119	72	3	50	163	88	204	5.64e-11	60.5

Find 29 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGGAAAGAAAGAGGTGATT+TGG	0.310562	7_1:+30425178	Msa1015800:CDS
GCACAACAGAAAGAACTATA+TGG	0.319207	7_1:+30425277	Msa1015800:CDS
TAAAAGTTTCGAACTTGAAT+TGG	0.321703	7_1:-30425226	None:intergenic
TCTGCGAATATGACCGGTCT+TGG	0.362323	7_1:-30424465	None:intergenic
CTTGAATTGGTTGCAACATT+CGG	0.397503	7_1:-30425213	None:intergenic
GTCAAGATGCGAGTACTGTT+TGG	0.397651	7_1:-30424395	None:intergenic
TTGCTTGTAAGTTTCATGTT+TGG	0.400776	7_1:-30425333	None:intergenic
CTATACCTGAAGTGTTCATA+TGG	0.404879	7_1:+30425448	Msa1015800:CDS
CTTACAAGCAACAAAATAAC+AGG	0.405748	7_1:+30425345	Msa1015800:CDS
TTTGGCAACATTACATTTGA+AGG	0.409920	7_1:-30425315	None:intergenic
TACTCGCATCTTGACTGAAA+TGG	0.413605	7_1:+30424403	Msa1015800:CDS
GGGAACCTTGTACTACTTGA+AGG	0.452115	7_1:+30425255	Msa1015800:CDS
ACATTACATTTGAAGGATGC+TGG	0.469330	7_1:-30425308	None:intergenic
CTTCCAATGGATGGATCATA+AGG	0.469504	7_1:-30425399	None:intergenic
AATGATCTTGTGGTATTGAA+TGG	0.483224	7_1:+30425159	Msa1015800:CDS
ACATTCCATATGAACACTTC+AGG	0.487869	7_1:-30425453	None:intergenic
GTTGTTAAAATATCTGATAA+TGG	0.494516	7_1:+30425135	Msa1015800:CDS
ACCTTTCTTTAATCTTCGCA+TGG	0.516240	7_1:-30424369	None:intergenic
CACAACAGAAAGAACTATAT+GGG	0.518422	7_1:+30425278	Msa1015800:CDS
TGTGGACTGTGTTCCAAGAC+CGG	0.524110	7_1:+30424452	Msa1015800:CDS
AGAAAGTAAAACAAACATCA+TGG	0.525875	7_1:+30425370	Msa1015800:CDS
ACACCTTATGATCCATCCAT+TGG	0.528123	7_1:+30425396	Msa1015800:CDS
TTGTGCCTTCAAGTAGTACA+AGG	0.550916	7_1:-30425260	None:intergenic
CTTGACTGAAATGGATGTTG+TGG	0.551935	7_1:+30424412	Msa1015800:CDS
GGTTGCAACATTCGGTGCGT+TGG	0.554193	7_1:-30425205	None:intergenic
ACAGTTTCTGCGAATATGAC+CGG	0.572855	7_1:-30424471	None:intergenic
ACCATGCGAAGATTAAAGAA+AGG	0.597925	7_1:+30424368	None:intergenic
TGATAATGGTAATGATCTTG+TGG	0.621215	7_1:+30425149	Msa1015800:CDS
GGTATTGAATGGAAAGAAAG+AGG	0.631723	7_1:+30425170	Msa1015800:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATATTTATATACAATGT+AGG	+	chr7_1:30424694-30424713	Msa1015800:intron	10.0%
!!!	AGTTTAATTTTGTTTTTTTA+TGG	-	chr7_1:30424800-30424819	None:intergenic	10.0%
!!	AAAACAAAATTAAACTAAAA+TGG	+	chr7_1:30424804-30424823	Msa1015800:intron	10.0%
!!	AAAATATTTATATACAATGT+AGG	+	chr7_1:30424694-30424713	Msa1015800:intron	10.0%
!!!	AGTTTAATTTTGTTTTTTTA+TGG	-	chr7_1:30424800-30424819	None:intergenic	10.0%
!!	AAAACAAAATTAAACTAAAA+TGG	+	chr7_1:30424804-30424823	Msa1015800:intron	10.0%
!!!	TTAATTTTGTTTTTGAAAGA+AGG	-	chr7_1:30424773-30424792	None:intergenic	15.0%
!!	TTTATTTATATATGGAACAA+GGG	+	chr7_1:30424866-30424885	Msa1015800:intron	15.0%
!!!	TTAATTTTGTTTTTGAAAGA+AGG	-	chr7_1:30424773-30424792	None:intergenic	15.0%
!!	TTTATTTATATATGGAACAA+GGG	+	chr7_1:30424866-30424885	Msa1015800:intron	15.0%
!!	AAAATTAAACTAAAATGGCA+TGG	+	chr7_1:30424809-30424828	Msa1015800:intron	20.0%
!!!	CTTTATTTATATATGGAACA+AGG	+	chr7_1:30424865-30424884	Msa1015800:intron	20.0%
!!!	TTCATGTTTGTTAATTCAAT+TGG	-	chr7_1:30424921-30424940	None:intergenic	20.0%
!!	GTTGTTAAAATATCTGATAA+TGG	+	chr7_1:30425135-30425154	Msa1015800:CDS	20.0%
!!	AAAATTAAACTAAAATGGCA+TGG	+	chr7_1:30424809-30424828	Msa1015800:intron	20.0%
!!!	CTTTATTTATATATGGAACA+AGG	+	chr7_1:30424865-30424884	Msa1015800:intron	20.0%
!!!	TTCATGTTTGTTAATTCAAT+TGG	-	chr7_1:30424921-30424940	None:intergenic	20.0%
!!	GTTGTTAAAATATCTGATAA+TGG	+	chr7_1:30425135-30425154	Msa1015800:CDS	20.0%
!	AACGAAGAAAATTAACTACT+GGG	-	chr7_1:30424512-30424531	None:intergenic	25.0%
!!	TGCTGCTCTTTATTTATATA+TGG	+	chr7_1:30424858-30424877	Msa1015800:intron	25.0%
!!	TGCAACAATAATTTTCAACT+AGG	+	chr7_1:30425086-30425105	Msa1015800:intron	25.0%
!!	GCAACAATAATTTTCAACTA+GGG	+	chr7_1:30425087-30425106	Msa1015800:intron	25.0%
!!	CAACAATAATTTTCAACTAG+GGG	+	chr7_1:30425088-30425107	Msa1015800:intron	25.0%
!	TAAAAGTTTCGAACTTGAAT+TGG	-	chr7_1:30425229-30425248	None:intergenic	25.0%
!	AGAAAGTAAAACAAACATCA+TGG	+	chr7_1:30425370-30425389	Msa1015800:CDS	25.0%
!	AACGAAGAAAATTAACTACT+GGG	-	chr7_1:30424512-30424531	None:intergenic	25.0%
!!	TGCTGCTCTTTATTTATATA+TGG	+	chr7_1:30424858-30424877	Msa1015800:intron	25.0%
!!	TGCAACAATAATTTTCAACT+AGG	+	chr7_1:30425086-30425105	Msa1015800:intron	25.0%
!!	GCAACAATAATTTTCAACTA+GGG	+	chr7_1:30425087-30425106	Msa1015800:intron	25.0%
!!	CAACAATAATTTTCAACTAG+GGG	+	chr7_1:30425088-30425107	Msa1015800:intron	25.0%
!	TAAAAGTTTCGAACTTGAAT+TGG	-	chr7_1:30425229-30425248	None:intergenic	25.0%
!	AGAAAGTAAAACAAACATCA+TGG	+	chr7_1:30425370-30425389	Msa1015800:CDS	25.0%
	ACGAAGAAAATTAACTACTG+GGG	-	chr7_1:30424511-30424530	None:intergenic	30.0%
	CAACGAAGAAAATTAACTAC+TGG	-	chr7_1:30424513-30424532	None:intergenic	30.0%
	TTATATATGGAACAAGGGTA+TGG	+	chr7_1:30424871-30424890	Msa1015800:intron	30.0%
	AGTGAGCTCTACATTTAATT+TGG	-	chr7_1:30424969-30424988	None:intergenic	30.0%
!	CAGACTTATCAATTTTCTTC+TGG	+	chr7_1:30425111-30425130	Msa1015800:CDS	30.0%
!!	TGATAATGGTAATGATCTTG+TGG	+	chr7_1:30425149-30425168	Msa1015800:CDS	30.0%
!	AATGATCTTGTGGTATTGAA+TGG	+	chr7_1:30425159-30425178	Msa1015800:CDS	30.0%
!	AGTTCGAAACTTTTAGATTC+AGG	+	chr7_1:30425234-30425253	Msa1015800:CDS	30.0%
!	GTTCGAAACTTTTAGATTCA+GGG	+	chr7_1:30425235-30425254	Msa1015800:CDS	30.0%
	CACAACAGAAAGAACTATAT+GGG	+	chr7_1:30425278-30425297	Msa1015800:CDS	30.0%
	TTTGGCAACATTACATTTGA+AGG	-	chr7_1:30425318-30425337	None:intergenic	30.0%
	TTGCTTGTAAGTTTCATGTT+TGG	-	chr7_1:30425336-30425355	None:intergenic	30.0%
	CTTACAAGCAACAAAATAAC+AGG	+	chr7_1:30425345-30425364	Msa1015800:CDS	30.0%
	ACGAAGAAAATTAACTACTG+GGG	-	chr7_1:30424511-30424530	None:intergenic	30.0%
	CAACGAAGAAAATTAACTAC+TGG	-	chr7_1:30424513-30424532	None:intergenic	30.0%
	TTATATATGGAACAAGGGTA+TGG	+	chr7_1:30424871-30424890	Msa1015800:intron	30.0%
	AGTGAGCTCTACATTTAATT+TGG	-	chr7_1:30424969-30424988	None:intergenic	30.0%
!	CAGACTTATCAATTTTCTTC+TGG	+	chr7_1:30425111-30425130	Msa1015800:CDS	30.0%
!!	TGATAATGGTAATGATCTTG+TGG	+	chr7_1:30425149-30425168	Msa1015800:CDS	30.0%
!	AATGATCTTGTGGTATTGAA+TGG	+	chr7_1:30425159-30425178	Msa1015800:CDS	30.0%
!	AGTTCGAAACTTTTAGATTC+AGG	+	chr7_1:30425234-30425253	Msa1015800:CDS	30.0%
!	GTTCGAAACTTTTAGATTCA+GGG	+	chr7_1:30425235-30425254	Msa1015800:CDS	30.0%
	CACAACAGAAAGAACTATAT+GGG	+	chr7_1:30425278-30425297	Msa1015800:CDS	30.0%
	TTTGGCAACATTACATTTGA+AGG	-	chr7_1:30425318-30425337	None:intergenic	30.0%
	TTGCTTGTAAGTTTCATGTT+TGG	-	chr7_1:30425336-30425355	None:intergenic	30.0%
	CTTACAAGCAACAAAATAAC+AGG	+	chr7_1:30425345-30425364	Msa1015800:CDS	30.0%
!!	CAGAGGGGTGTTTAAAAAAA+TGG	+	chr7_1:30425028-30425047	Msa1015800:intron	35.0%
!	GGTATTGAATGGAAAGAAAG+AGG	+	chr7_1:30425170-30425189	Msa1015800:CDS	35.0%
	ATGGAAAGAAAGAGGTGATT+TGG	+	chr7_1:30425178-30425197	Msa1015800:CDS	35.0%
	CTTGAATTGGTTGCAACATT+CGG	-	chr7_1:30425216-30425235	None:intergenic	35.0%
	GCACAACAGAAAGAACTATA+TGG	+	chr7_1:30425277-30425296	Msa1015800:CDS	35.0%
	ACATTACATTTGAAGGATGC+TGG	-	chr7_1:30425311-30425330	None:intergenic	35.0%
	AAAAAGAAGCTTCCAATGGA+TGG	-	chr7_1:30425411-30425430	None:intergenic	35.0%
	ACTCAAAAAGAAGCTTCCAA+TGG	-	chr7_1:30425415-30425434	None:intergenic	35.0%
!!!	GCTTCTTTTTGAGTGTTGAA+AGG	+	chr7_1:30425421-30425440	Msa1015800:CDS	35.0%
!	CTATACCTGAAGTGTTCATA+TGG	+	chr7_1:30425448-30425467	Msa1015800:CDS	35.0%
	ACATTCCATATGAACACTTC+AGG	-	chr7_1:30425456-30425475	None:intergenic	35.0%
!!	CAGAGGGGTGTTTAAAAAAA+TGG	+	chr7_1:30425028-30425047	Msa1015800:intron	35.0%
!	GGTATTGAATGGAAAGAAAG+AGG	+	chr7_1:30425170-30425189	Msa1015800:CDS	35.0%
	ATGGAAAGAAAGAGGTGATT+TGG	+	chr7_1:30425178-30425197	Msa1015800:CDS	35.0%
	CTTGAATTGGTTGCAACATT+CGG	-	chr7_1:30425216-30425235	None:intergenic	35.0%
	GCACAACAGAAAGAACTATA+TGG	+	chr7_1:30425277-30425296	Msa1015800:CDS	35.0%
	ACATTACATTTGAAGGATGC+TGG	-	chr7_1:30425311-30425330	None:intergenic	35.0%
	AAAAAGAAGCTTCCAATGGA+TGG	-	chr7_1:30425411-30425430	None:intergenic	35.0%
	ACTCAAAAAGAAGCTTCCAA+TGG	-	chr7_1:30425415-30425434	None:intergenic	35.0%
!!!	GCTTCTTTTTGAGTGTTGAA+AGG	+	chr7_1:30425421-30425440	Msa1015800:CDS	35.0%
!	CTATACCTGAAGTGTTCATA+TGG	+	chr7_1:30425448-30425467	Msa1015800:CDS	35.0%
	ACATTCCATATGAACACTTC+AGG	-	chr7_1:30425456-30425475	None:intergenic	35.0%
	TACTCGCATCTTGACTGAAA+TGG	+	chr7_1:30424403-30424422	Msa1015800:CDS	40.0%
	CTTGACTGAAATGGATGTTG+TGG	+	chr7_1:30424412-30424431	Msa1015800:CDS	40.0%
!!	GAAAAAGCACCGAGAAAATG+TGG	+	chr7_1:30424434-30424453	Msa1015800:CDS	40.0%
!	GAACACAGTCCACATTTTCT+CGG	-	chr7_1:30424446-30424465	None:intergenic	40.0%
	ACAGTTTCTGCGAATATGAC+CGG	-	chr7_1:30424474-30424493	None:intergenic	40.0%
	AAAGCCTGCAAGATTTCAGA+GGG	+	chr7_1:30425012-30425031	Msa1015800:intron	40.0%
	GACATGTTCGCCAAGTTAAA+AGG	+	chr7_1:30425050-30425069	Msa1015800:intron	40.0%
	TCGCCAAGTTAAAAGGAGAA+AGG	+	chr7_1:30425057-30425076	Msa1015800:intron	40.0%
	CGCCAAGTTAAAAGGAGAAA+GGG	+	chr7_1:30425058-30425077	Msa1015800:intron	40.0%
	GCCAAGTTAAAAGGAGAAAG+GGG	+	chr7_1:30425059-30425078	Msa1015800:intron	40.0%
!!	ACCCCTTTCTCCTTTTAACT+TGG	-	chr7_1:30425063-30425082	None:intergenic	40.0%
	TTGTGCCTTCAAGTAGTACA+AGG	-	chr7_1:30425263-30425282	None:intergenic	40.0%
	ACACCTTATGATCCATCCAT+TGG	+	chr7_1:30425396-30425415	Msa1015800:CDS	40.0%
	CTTCCAATGGATGGATCATA+AGG	-	chr7_1:30425402-30425421	None:intergenic	40.0%
	TACTCGCATCTTGACTGAAA+TGG	+	chr7_1:30424403-30424422	Msa1015800:CDS	40.0%
	CTTGACTGAAATGGATGTTG+TGG	+	chr7_1:30424412-30424431	Msa1015800:CDS	40.0%
!!	GAAAAAGCACCGAGAAAATG+TGG	+	chr7_1:30424434-30424453	Msa1015800:CDS	40.0%
!	GAACACAGTCCACATTTTCT+CGG	-	chr7_1:30424446-30424465	None:intergenic	40.0%
	ACAGTTTCTGCGAATATGAC+CGG	-	chr7_1:30424474-30424493	None:intergenic	40.0%
	AAAGCCTGCAAGATTTCAGA+GGG	+	chr7_1:30425012-30425031	Msa1015800:intron	40.0%
	GACATGTTCGCCAAGTTAAA+AGG	+	chr7_1:30425050-30425069	Msa1015800:intron	40.0%
	TCGCCAAGTTAAAAGGAGAA+AGG	+	chr7_1:30425057-30425076	Msa1015800:intron	40.0%
	CGCCAAGTTAAAAGGAGAAA+GGG	+	chr7_1:30425058-30425077	Msa1015800:intron	40.0%
	GCCAAGTTAAAAGGAGAAAG+GGG	+	chr7_1:30425059-30425078	Msa1015800:intron	40.0%
!!	ACCCCTTTCTCCTTTTAACT+TGG	-	chr7_1:30425063-30425082	None:intergenic	40.0%
	TTGTGCCTTCAAGTAGTACA+AGG	-	chr7_1:30425263-30425282	None:intergenic	40.0%
	ACACCTTATGATCCATCCAT+TGG	+	chr7_1:30425396-30425415	Msa1015800:CDS	40.0%
	CTTCCAATGGATGGATCATA+AGG	-	chr7_1:30425402-30425421	None:intergenic	40.0%
!	GTCAAGATGCGAGTACTGTT+TGG	-	chr7_1:30424398-30424417	None:intergenic	45.0%
	CTACTGGGGTGATTAACAGA+TGG	-	chr7_1:30424497-30424516	None:intergenic	45.0%
	CAAAGCCTGCAAGATTTCAG+AGG	+	chr7_1:30425011-30425030	Msa1015800:intron	45.0%
	AAGCCTGCAAGATTTCAGAG+GGG	+	chr7_1:30425013-30425032	Msa1015800:intron	45.0%
	GGGAACCTTGTACTACTTGA+AGG	+	chr7_1:30425255-30425274	Msa1015800:CDS	45.0%
!	GTCAAGATGCGAGTACTGTT+TGG	-	chr7_1:30424398-30424417	None:intergenic	45.0%
	CTACTGGGGTGATTAACAGA+TGG	-	chr7_1:30424497-30424516	None:intergenic	45.0%
	CAAAGCCTGCAAGATTTCAG+AGG	+	chr7_1:30425011-30425030	Msa1015800:intron	45.0%
	AAGCCTGCAAGATTTCAGAG+GGG	+	chr7_1:30425013-30425032	Msa1015800:intron	45.0%
	GGGAACCTTGTACTACTTGA+AGG	+	chr7_1:30425255-30425274	Msa1015800:CDS	45.0%
!!	ATAATTATATTAAGATAATT+TGG	-	chr7_1:30424547-30424566	None:intergenic	5.0%
!!	ATAATTATATTAAGATAATT+TGG	-	chr7_1:30424547-30424566	None:intergenic	5.0%
!	TGTGGACTGTGTTCCAAGAC+CGG	+	chr7_1:30424452-30424471	Msa1015800:CDS	50.0%
	TCTGCGAATATGACCGGTCT+TGG	-	chr7_1:30424468-30424487	None:intergenic	50.0%
!!	ACACCCCTCTGAAATCTTGC+AGG	-	chr7_1:30425019-30425038	None:intergenic	50.0%
!	TGTGGACTGTGTTCCAAGAC+CGG	+	chr7_1:30424452-30424471	Msa1015800:CDS	50.0%
	TCTGCGAATATGACCGGTCT+TGG	-	chr7_1:30424468-30424487	None:intergenic	50.0%
!!	ACACCCCTCTGAAATCTTGC+AGG	-	chr7_1:30425019-30425038	None:intergenic	50.0%
!!	GGTTGCAACATTCGGTGCGT+TGG	-	chr7_1:30425208-30425227	None:intergenic	55.0%
!!	GGTTGCAACATTCGGTGCGT+TGG	-	chr7_1:30425208-30425227	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	30424371	30425479	30424371	ID=Msa1015800;Name=Msa1015800
chr7_1	mRNA	30424371	30425479	30424371	ID=Msa1015800-mRNA-1;Parent=Msa1015800;Name=Msa1015800-mRNA-1;_AED=0.54;_eAED=0.54;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|166
chr7_1	exon	30424371	30424499	30424371	ID=Msa1015800-mRNA-1:exon:6142;Parent=Msa1015800-mRNA-1
chr7_1	exon	30425108	30425479	30425108	ID=Msa1015800-mRNA-1:exon:6143;Parent=Msa1015800-mRNA-1
chr7_1	CDS	30424371	30424499	30424371	ID=Msa1015800-mRNA-1:cds;Parent=Msa1015800-mRNA-1
chr7_1	CDS	30425108	30425479	30425108	ID=Msa1015800-mRNA-1:cds;Parent=Msa1015800-mRNA-1

Gene Sequence

>Msa1015800

ATGCGAAGATTAAAGAAAGGTCATCCAAACAGTACTCGCATCTTGACTGAAATGGATGTTGTGGAAAAAGCACCGAGAAAATGTGGACTGTGTTCCAAGACCGGTCATATTCGCAGAAACTGTCCATCTGGGCAGACTTATCAATTTTCTTCTGGTGTTGTTAAAATATCTGATAATGGTAATGATCTTGTGGTATTGAATGGAAAGAAAGAGGTGATTTGGACATCCAACGCACCGAATGTTGCAACCAATTCAAGTTCGAAACTTTTAGATTCAGGGAACCTTGTACTACTTGAAGGCACAACAGAAAGAACTATATGGGAGAGTTTCCAGCATCCTTCAAATGTAATGTTGCCAAACATGAAACTTACAAGCAACAAAATAACAGGTGAGAAAGTAAAACAAACATCATGGAAAACACCTTATGATCCATCCATTGGAAGCTTCTTTTTGAGTGTTGAAAGGCTTACTATACCTGAAGTGTTCATATGGAATGTGTAA

Protein sequence

>Msa1015800

MRRLKKGHPNSTRILTEMDVVEKAPRKCGLCSKTGHIRRNCPSGQTYQFSSGVVKISDNGNDLVVLNGKKEVIWTSNAPNVATNSSSKLLDSGNLVLLEGTTERTIWESFQHPSNVMLPNMKLTSNKITGEKVKQTSWKTPYDPSIGSFFLSVERLTIPEVFIWNV*