Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139260 | XP_024627188.1 | 98.805 | 251 | 3 | 0 | 1 | 251 | 1 | 251 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139260 | sp|Q9FL82|FB270_ARATH | 66.142 | 254 | 81 | 3 | 1 | 251 | 1 | 252 | 3.48e-121 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139260 | B7FID8 | 98.805 | 251 | 3 | 0 | 1 | 251 | 1 | 251 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039270 | Msa1139260 | 0.803522 | 3.348665e-49 | -8.615850e-47 |
| Msa0181740 | Msa1139260 | -0.805419 | 1.347218e-49 | -8.615850e-47 |
| Msa0383570 | Msa1139260 | -0.800109 | 1.681399e-48 | -8.615850e-47 |
| Msa0446480 | Msa1139260 | -0.802681 | 4.998357e-49 | -8.615850e-47 |
| Msa0482020 | Msa1139260 | -0.822995 | 1.757602e-53 | -8.615850e-47 |
| Msa1008320 | Msa1139260 | 0.973146 | 6.164797e-136 | -8.615850e-47 |
| Msa1139260 | Msa1209390 | -0.824207 | 9.149061e-54 | -8.615850e-47 |
| Msa1139260 | Msa1292560 | 0.800859 | 1.182480e-48 | -8.615850e-47 |
| Msa0504740 | Msa1139260 | -0.802217 | 6.229418e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139260 | MtrunA17_Chr7g0218771 | 98.805 | 251 | 3 | 0 | 1 | 251 | 1 | 251 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139260 | AT5G39250.2 | 66.142 | 254 | 81 | 3 | 1 | 251 | 1 | 252 | 3.54e-122 | 348 |
| Msa1139260 | AT5G39250.1 | 66.142 | 254 | 81 | 3 | 1 | 251 | 1 | 252 | 3.54e-122 | 348 |
Find 55 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACGTTGTTGGCGTTTA+TGG | 0.113675 | 7_4:-9426536 | None:intergenic |
| GAAGATCTTATGGATGTATT+TGG | 0.156608 | 7_4:+9426987 | Msa1139260:CDS |
| GAGAATTTCCTTTGATGATT+TGG | 0.254747 | 7_4:+9426572 | Msa1139260:CDS |
| TAGGTTTCAGTAGGAGGATT+AGG | 0.276690 | 7_4:-9426492 | None:intergenic |
| TAGCTAAAGACGATTTCTTT+TGG | 0.285765 | 7_4:+9426427 | Msa1139260:CDS |
| CTGTGATGTGGCAAATTCTA+AGG | 0.293619 | 7_4:+9427025 | Msa1139260:CDS |
| AGAGGGAAGTGAAGATCTTA+TGG | 0.307374 | 7_4:+9426977 | Msa1139260:CDS |
| ATGGATATCTTTGCTATTCA+TGG | 0.339435 | 7_4:+9426953 | Msa1139260:CDS |
| CTCTTCTCGGAAGCGGTGTC+TGG | 0.348746 | 7_4:+9426630 | Msa1139260:CDS |
| GCAGATTGATGGCCATCTAT+TGG | 0.358781 | 7_4:-9426463 | None:intergenic |
| TCTGGCTCTGTCCTGCAATC+AGG | 0.360560 | 7_4:+9426648 | Msa1139260:CDS |
| GGAAGAAGTCTTGTGGCTAT+TGG | 0.366589 | 7_4:+9427046 | Msa1139260:CDS |
| CCACATCACAGAAATCCATT+TGG | 0.372208 | 7_4:-9427013 | None:intergenic |
| TGTTGATCTTGCTTCTTGTA+TGG | 0.375347 | 7_4:+9426380 | Msa1139260:CDS |
| AAGATCTTATGGATGTATTT+GGG | 0.377784 | 7_4:+9426988 | Msa1139260:CDS |
| GACTTCTGAAACCTGATTGC+AGG | 0.382994 | 7_4:-9426659 | None:intergenic |
| GGTTTCAGAAGTCCAGCTTC+TGG | 0.386300 | 7_4:+9426669 | Msa1139260:CDS |
| TGGGCGGAAGGATACAAATA+AGG | 0.418384 | 7_4:+9426812 | Msa1139260:CDS |
| TTAGGTCGCTTGCAGATTGA+TGG | 0.425972 | 7_4:-9426474 | None:intergenic |
| GGCTATTGGACATGCTAGAT+TGG | 0.433276 | 7_4:+9427060 | Msa1139260:CDS |
| AGATATCCATGCCCGGATGC+CGG | 0.435632 | 7_4:-9426940 | None:intergenic |
| GGAGAAGAGTTCTACGTTGT+TGG | 0.464005 | 7_4:-9426545 | None:intergenic |
| TGAAGATATACTTCTCTTCT+CGG | 0.464021 | 7_4:+9426617 | Msa1139260:CDS |
| AAATCATCAAAGGAAATTCT+CGG | 0.464319 | 7_4:-9426570 | None:intergenic |
| ATCTTTGCTATTCATGGAAG+AGG | 0.467936 | 7_4:+9426959 | Msa1139260:CDS |
| GATCAACACCCTCCAGTAAA+GGG | 0.470826 | 7_4:-9426365 | None:intergenic |
| GATATCCATGCCCGGATGCC+GGG | 0.472969 | 7_4:-9426939 | None:intergenic |
| GGATGTATTTGGGATCCAAA+TGG | 0.475681 | 7_4:+9426998 | Msa1139260:CDS |
| ATAGTAAACCTAGGTTCAAC+CGG | 0.490159 | 7_4:-9426747 | None:intergenic |
| TTGTAGTAGGTTTCAGTAGG+AGG | 0.490448 | 7_4:-9426498 | None:intergenic |
| AGATCAACACCCTCCAGTAA+AGG | 0.495696 | 7_4:-9426366 | None:intergenic |
| CTCTGTGATGGTTGGGCGGA+AGG | 0.498808 | 7_4:+9426800 | Msa1139260:CDS |
| GTTAGTGTCTCTGTGATGGT+TGG | 0.508227 | 7_4:+9426792 | Msa1139260:CDS |
| CCGTTCAATATAATCGAAGA+TGG | 0.510171 | 7_4:-9426856 | None:intergenic |
| ACGTTGTTGGCGTTTATGGA+AGG | 0.533624 | 7_4:-9426532 | None:intergenic |
| TTAGTGTCTCTGTGATGGTT+GGG | 0.542497 | 7_4:+9426793 | Msa1139260:CDS |
| AATGTATGTGTGCCAATAGA+TGG | 0.548994 | 7_4:+9426451 | Msa1139260:CDS |
| TATACTTCTCTTCTCGGAAG+CGG | 0.561703 | 7_4:+9426623 | Msa1139260:CDS |
| AAGTCACAAACTCCAGAAGC+TGG | 0.569927 | 7_4:-9426681 | None:intergenic |
| GATTACCTAGACATATCCCC+TGG | 0.593211 | 7_4:+9426903 | Msa1139260:CDS |
| CATCAAAGGAAATTCTCGGA+GGG | 0.597906 | 7_4:-9426566 | None:intergenic |
| GGTAGCCAGGGGATATGTCT+AGG | 0.598963 | 7_4:-9426908 | None:intergenic |
| TCTTTGCTATTCATGGAAGA+GGG | 0.599764 | 7_4:+9426960 | Msa1139260:CDS |
| CCATCTTCGATTATATTGAA+CGG | 0.603506 | 7_4:+9426856 | Msa1139260:CDS |
| AACTTGTAGTAGGTTTCAGT+AGG | 0.606356 | 7_4:-9426501 | None:intergenic |
| ACGGTCATCATATAGAGCGT+TGG | 0.609824 | 7_4:+9426875 | Msa1139260:CDS |
| GAATGTTAGTGTCTCTGTGA+TGG | 0.628771 | 7_4:+9426788 | Msa1139260:CDS |
| ATAGCAAAGATATCCATGCC+CGG | 0.629559 | 7_4:-9426947 | None:intergenic |
| CCAAATGGATTTCTGTGATG+TGG | 0.629679 | 7_4:+9427013 | Msa1139260:CDS |
| TCTTGTATTCAGAACTCTCG+AGG | 0.633242 | 7_4:-9426716 | None:intergenic |
| ATTCTAAGGAAGAAGTCTTG+TGG | 0.635806 | 7_4:+9427039 | Msa1139260:CDS |
| GTGTCTCTGTGATGGTTGGG+CGG | 0.653712 | 7_4:+9426796 | Msa1139260:CDS |
| TCTGAAGGGATAGTAAACCT+AGG | 0.660259 | 7_4:-9426756 | None:intergenic |
| GTATGGCTGTCTGTAAGCAG+TGG | 0.670737 | 7_4:+9426397 | Msa1139260:CDS |
| TCATCAAAGGAAATTCTCGG+AGG | 0.698476 | 7_4:-9426567 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTTTATATAACTTGTAGT+AGG | - | chr7_4:9426514-9426533 | None:intergenic | 25.0% |
| ! | AAATCATCAAAGGAAATTCT+CGG | - | chr7_4:9426573-9426592 | None:intergenic | 25.0% |
| ! | AAGATCTTATGGATGTATTT+GGG | + | chr7_4:9426988-9427007 | Msa1139260:CDS | 25.0% |
| !!! | GGTTTTATATAACTTGTAGT+AGG | - | chr7_4:9426514-9426533 | None:intergenic | 25.0% |
| ! | AAATCATCAAAGGAAATTCT+CGG | - | chr7_4:9426573-9426592 | None:intergenic | 25.0% |
| ! | AAGATCTTATGGATGTATTT+GGG | + | chr7_4:9426988-9427007 | Msa1139260:CDS | 25.0% |
| ! | TAGCTAAAGACGATTTCTTT+TGG | + | chr7_4:9426427-9426446 | Msa1139260:CDS | 30.0% |
| ! | GAGAATTTCCTTTGATGATT+TGG | + | chr7_4:9426572-9426591 | Msa1139260:CDS | 30.0% |
| GAAAAACTCCAAATCATCAA+AGG | - | chr7_4:9426583-9426602 | None:intergenic | 30.0% | |
| ! | TGGAGTTTTTCATTGACATT+TGG | + | chr7_4:9426592-9426611 | Msa1139260:CDS | 30.0% |
| ! | GGAGTTTTTCATTGACATTT+GGG | + | chr7_4:9426593-9426612 | Msa1139260:CDS | 30.0% |
| TGAAGATATACTTCTCTTCT+CGG | + | chr7_4:9426617-9426636 | Msa1139260:CDS | 30.0% | |
| ! | TGAATACAAGATGACTTTTC+CGG | + | chr7_4:9426728-9426747 | Msa1139260:CDS | 30.0% |
| !! | CATTCTGATTTTGTTCTGAA+GGG | - | chr7_4:9426773-9426792 | None:intergenic | 30.0% |
| ! | ACATTCTGATTTTGTTCTGA+AGG | - | chr7_4:9426774-9426793 | None:intergenic | 30.0% |
| CCATCTTCGATTATATTGAA+CGG | + | chr7_4:9426856-9426875 | Msa1139260:CDS | 30.0% | |
| !! | ATGGATATCTTTGCTATTCA+TGG | + | chr7_4:9426953-9426972 | Msa1139260:CDS | 30.0% |
| GAAGATCTTATGGATGTATT+TGG | + | chr7_4:9426987-9427006 | Msa1139260:CDS | 30.0% | |
| ! | TAGCTAAAGACGATTTCTTT+TGG | + | chr7_4:9426427-9426446 | Msa1139260:CDS | 30.0% |
| ! | GAGAATTTCCTTTGATGATT+TGG | + | chr7_4:9426572-9426591 | Msa1139260:CDS | 30.0% |
| GAAAAACTCCAAATCATCAA+AGG | - | chr7_4:9426583-9426602 | None:intergenic | 30.0% | |
| ! | TGGAGTTTTTCATTGACATT+TGG | + | chr7_4:9426592-9426611 | Msa1139260:CDS | 30.0% |
| ! | GGAGTTTTTCATTGACATTT+GGG | + | chr7_4:9426593-9426612 | Msa1139260:CDS | 30.0% |
| TGAAGATATACTTCTCTTCT+CGG | + | chr7_4:9426617-9426636 | Msa1139260:CDS | 30.0% | |
| ! | TGAATACAAGATGACTTTTC+CGG | + | chr7_4:9426728-9426747 | Msa1139260:CDS | 30.0% |
| !! | CATTCTGATTTTGTTCTGAA+GGG | - | chr7_4:9426773-9426792 | None:intergenic | 30.0% |
| ! | ACATTCTGATTTTGTTCTGA+AGG | - | chr7_4:9426774-9426793 | None:intergenic | 30.0% |
| CCATCTTCGATTATATTGAA+CGG | + | chr7_4:9426856-9426875 | Msa1139260:CDS | 30.0% | |
| !! | ATGGATATCTTTGCTATTCA+TGG | + | chr7_4:9426953-9426972 | Msa1139260:CDS | 30.0% |
| GAAGATCTTATGGATGTATT+TGG | + | chr7_4:9426987-9427006 | Msa1139260:CDS | 30.0% | |
| !! | GGAATCTGAAGAAGTTTTGA+AGG | + | chr7_4:9426335-9426354 | Msa1139260:CDS | 35.0% |
| TGTTGATCTTGCTTCTTGTA+TGG | + | chr7_4:9426380-9426399 | Msa1139260:CDS | 35.0% | |
| AATGTATGTGTGCCAATAGA+TGG | + | chr7_4:9426451-9426470 | Msa1139260:CDS | 35.0% | |
| AACTTGTAGTAGGTTTCAGT+AGG | - | chr7_4:9426504-9426523 | None:intergenic | 35.0% | |
| ATAGTAAACCTAGGTTCAAC+CGG | - | chr7_4:9426750-9426769 | None:intergenic | 35.0% | |
| CCGTTCAATATAATCGAAGA+TGG | - | chr7_4:9426859-9426878 | None:intergenic | 35.0% | |
| !! | ATCTTTGCTATTCATGGAAG+AGG | + | chr7_4:9426959-9426978 | Msa1139260:CDS | 35.0% |
| !! | TCTTTGCTATTCATGGAAGA+GGG | + | chr7_4:9426960-9426979 | Msa1139260:CDS | 35.0% |
| ! | ATTCTAAGGAAGAAGTCTTG+TGG | + | chr7_4:9427039-9427058 | Msa1139260:CDS | 35.0% |
| !! | GGAATCTGAAGAAGTTTTGA+AGG | + | chr7_4:9426335-9426354 | Msa1139260:CDS | 35.0% |
| TGTTGATCTTGCTTCTTGTA+TGG | + | chr7_4:9426380-9426399 | Msa1139260:CDS | 35.0% | |
| AATGTATGTGTGCCAATAGA+TGG | + | chr7_4:9426451-9426470 | Msa1139260:CDS | 35.0% | |
| AACTTGTAGTAGGTTTCAGT+AGG | - | chr7_4:9426504-9426523 | None:intergenic | 35.0% | |
| ATAGTAAACCTAGGTTCAAC+CGG | - | chr7_4:9426750-9426769 | None:intergenic | 35.0% | |
| CCGTTCAATATAATCGAAGA+TGG | - | chr7_4:9426859-9426878 | None:intergenic | 35.0% | |
| !! | ATCTTTGCTATTCATGGAAG+AGG | + | chr7_4:9426959-9426978 | Msa1139260:CDS | 35.0% |
| !! | TCTTTGCTATTCATGGAAGA+GGG | + | chr7_4:9426960-9426979 | Msa1139260:CDS | 35.0% |
| ! | ATTCTAAGGAAGAAGTCTTG+TGG | + | chr7_4:9427039-9427058 | Msa1139260:CDS | 35.0% |
| TAGGTTTCAGTAGGAGGATT+AGG | - | chr7_4:9426495-9426514 | None:intergenic | 40.0% | |
| TTGTAGTAGGTTTCAGTAGG+AGG | - | chr7_4:9426501-9426520 | None:intergenic | 40.0% | |
| TTCTACGTTGTTGGCGTTTA+TGG | - | chr7_4:9426539-9426558 | None:intergenic | 40.0% | |
| CATCAAAGGAAATTCTCGGA+GGG | - | chr7_4:9426569-9426588 | None:intergenic | 40.0% | |
| TCATCAAAGGAAATTCTCGG+AGG | - | chr7_4:9426570-9426589 | None:intergenic | 40.0% | |
| TATACTTCTCTTCTCGGAAG+CGG | + | chr7_4:9426623-9426642 | Msa1139260:CDS | 40.0% | |
| TCTTGTATTCAGAACTCTCG+AGG | - | chr7_4:9426719-9426738 | None:intergenic | 40.0% | |
| TCTGAAGGGATAGTAAACCT+AGG | - | chr7_4:9426759-9426778 | None:intergenic | 40.0% | |
| GAATGTTAGTGTCTCTGTGA+TGG | + | chr7_4:9426788-9426807 | Msa1139260:CDS | 40.0% | |
| TTAGTGTCTCTGTGATGGTT+GGG | + | chr7_4:9426793-9426812 | Msa1139260:CDS | 40.0% | |
| ATAGCAAAGATATCCATGCC+CGG | - | chr7_4:9426950-9426969 | None:intergenic | 40.0% | |
| AGAGGGAAGTGAAGATCTTA+TGG | + | chr7_4:9426977-9426996 | Msa1139260:CDS | 40.0% | |
| ! | GGATGTATTTGGGATCCAAA+TGG | + | chr7_4:9426998-9427017 | Msa1139260:CDS | 40.0% |
| CCACATCACAGAAATCCATT+TGG | - | chr7_4:9427016-9427035 | None:intergenic | 40.0% | |
| ! | CCAAATGGATTTCTGTGATG+TGG | + | chr7_4:9427013-9427032 | Msa1139260:CDS | 40.0% |
| CTGTGATGTGGCAAATTCTA+AGG | + | chr7_4:9427025-9427044 | Msa1139260:CDS | 40.0% | |
| TAGGTTTCAGTAGGAGGATT+AGG | - | chr7_4:9426495-9426514 | None:intergenic | 40.0% | |
| TTGTAGTAGGTTTCAGTAGG+AGG | - | chr7_4:9426501-9426520 | None:intergenic | 40.0% | |
| TTCTACGTTGTTGGCGTTTA+TGG | - | chr7_4:9426539-9426558 | None:intergenic | 40.0% | |
| CATCAAAGGAAATTCTCGGA+GGG | - | chr7_4:9426569-9426588 | None:intergenic | 40.0% | |
| TCATCAAAGGAAATTCTCGG+AGG | - | chr7_4:9426570-9426589 | None:intergenic | 40.0% | |
| TATACTTCTCTTCTCGGAAG+CGG | + | chr7_4:9426623-9426642 | Msa1139260:CDS | 40.0% | |
| TCTTGTATTCAGAACTCTCG+AGG | - | chr7_4:9426719-9426738 | None:intergenic | 40.0% | |
| TCTGAAGGGATAGTAAACCT+AGG | - | chr7_4:9426759-9426778 | None:intergenic | 40.0% | |
| GAATGTTAGTGTCTCTGTGA+TGG | + | chr7_4:9426788-9426807 | Msa1139260:CDS | 40.0% | |
| TTAGTGTCTCTGTGATGGTT+GGG | + | chr7_4:9426793-9426812 | Msa1139260:CDS | 40.0% | |
| ATAGCAAAGATATCCATGCC+CGG | - | chr7_4:9426950-9426969 | None:intergenic | 40.0% | |
| AGAGGGAAGTGAAGATCTTA+TGG | + | chr7_4:9426977-9426996 | Msa1139260:CDS | 40.0% | |
| ! | GGATGTATTTGGGATCCAAA+TGG | + | chr7_4:9426998-9427017 | Msa1139260:CDS | 40.0% |
| CCACATCACAGAAATCCATT+TGG | - | chr7_4:9427016-9427035 | None:intergenic | 40.0% | |
| ! | CCAAATGGATTTCTGTGATG+TGG | + | chr7_4:9427013-9427032 | Msa1139260:CDS | 40.0% |
| CTGTGATGTGGCAAATTCTA+AGG | + | chr7_4:9427025-9427044 | Msa1139260:CDS | 40.0% | |
| !! | GAAGGCTGTTTTCCCTTTAC+TGG | + | chr7_4:9426353-9426372 | Msa1139260:CDS | 45.0% |
| !! | GCTGTTTTCCCTTTACTGGA+GGG | + | chr7_4:9426357-9426376 | Msa1139260:CDS | 45.0% |
| GATCAACACCCTCCAGTAAA+GGG | - | chr7_4:9426368-9426387 | None:intergenic | 45.0% | |
| AGATCAACACCCTCCAGTAA+AGG | - | chr7_4:9426369-9426388 | None:intergenic | 45.0% | |
| ! | GCAGATTGATGGCCATCTAT+TGG | - | chr7_4:9426466-9426485 | None:intergenic | 45.0% |
| TTAGGTCGCTTGCAGATTGA+TGG | - | chr7_4:9426477-9426496 | None:intergenic | 45.0% | |
| ACGTTGTTGGCGTTTATGGA+AGG | - | chr7_4:9426535-9426554 | None:intergenic | 45.0% | |
| GGAGAAGAGTTCTACGTTGT+TGG | - | chr7_4:9426548-9426567 | None:intergenic | 45.0% | |
| !! | GACTTCTGAAACCTGATTGC+AGG | - | chr7_4:9426662-9426681 | None:intergenic | 45.0% |
| AAGTCACAAACTCCAGAAGC+TGG | - | chr7_4:9426684-9426703 | None:intergenic | 45.0% | |
| ! | TGACTTTTCCGGTTGAACCT+AGG | + | chr7_4:9426739-9426758 | Msa1139260:CDS | 45.0% |
| GTTAGTGTCTCTGTGATGGT+TGG | + | chr7_4:9426792-9426811 | Msa1139260:CDS | 45.0% | |
| TGGGCGGAAGGATACAAATA+AGG | + | chr7_4:9426812-9426831 | Msa1139260:CDS | 45.0% | |
| ACGGTCATCATATAGAGCGT+TGG | + | chr7_4:9426875-9426894 | Msa1139260:CDS | 45.0% | |
| GATTACCTAGACATATCCCC+TGG | + | chr7_4:9426903-9426922 | Msa1139260:CDS | 45.0% | |
| ! | GGAAGAAGTCTTGTGGCTAT+TGG | + | chr7_4:9427046-9427065 | Msa1139260:CDS | 45.0% |
| GGCTATTGGACATGCTAGAT+TGG | + | chr7_4:9427060-9427079 | Msa1139260:CDS | 45.0% | |
| !! | GAAGGCTGTTTTCCCTTTAC+TGG | + | chr7_4:9426353-9426372 | Msa1139260:CDS | 45.0% |
| !! | GCTGTTTTCCCTTTACTGGA+GGG | + | chr7_4:9426357-9426376 | Msa1139260:CDS | 45.0% |
| GATCAACACCCTCCAGTAAA+GGG | - | chr7_4:9426368-9426387 | None:intergenic | 45.0% | |
| AGATCAACACCCTCCAGTAA+AGG | - | chr7_4:9426369-9426388 | None:intergenic | 45.0% | |
| ! | GCAGATTGATGGCCATCTAT+TGG | - | chr7_4:9426466-9426485 | None:intergenic | 45.0% |
| TTAGGTCGCTTGCAGATTGA+TGG | - | chr7_4:9426477-9426496 | None:intergenic | 45.0% | |
| ACGTTGTTGGCGTTTATGGA+AGG | - | chr7_4:9426535-9426554 | None:intergenic | 45.0% | |
| GGAGAAGAGTTCTACGTTGT+TGG | - | chr7_4:9426548-9426567 | None:intergenic | 45.0% | |
| !! | GACTTCTGAAACCTGATTGC+AGG | - | chr7_4:9426662-9426681 | None:intergenic | 45.0% |
| AAGTCACAAACTCCAGAAGC+TGG | - | chr7_4:9426684-9426703 | None:intergenic | 45.0% | |
| ! | TGACTTTTCCGGTTGAACCT+AGG | + | chr7_4:9426739-9426758 | Msa1139260:CDS | 45.0% |
| GTTAGTGTCTCTGTGATGGT+TGG | + | chr7_4:9426792-9426811 | Msa1139260:CDS | 45.0% | |
| TGGGCGGAAGGATACAAATA+AGG | + | chr7_4:9426812-9426831 | Msa1139260:CDS | 45.0% | |
| ACGGTCATCATATAGAGCGT+TGG | + | chr7_4:9426875-9426894 | Msa1139260:CDS | 45.0% | |
| GATTACCTAGACATATCCCC+TGG | + | chr7_4:9426903-9426922 | Msa1139260:CDS | 45.0% | |
| ! | GGAAGAAGTCTTGTGGCTAT+TGG | + | chr7_4:9427046-9427065 | Msa1139260:CDS | 45.0% |
| GGCTATTGGACATGCTAGAT+TGG | + | chr7_4:9427060-9427079 | Msa1139260:CDS | 45.0% | |
| !! | GGCTGTTTTCCCTTTACTGG+AGG | + | chr7_4:9426356-9426375 | Msa1139260:CDS | 50.0% |
| GTATGGCTGTCTGTAAGCAG+TGG | + | chr7_4:9426397-9426416 | Msa1139260:CDS | 50.0% | |
| GGTTTCAGAAGTCCAGCTTC+TGG | + | chr7_4:9426669-9426688 | Msa1139260:CDS | 50.0% | |
| !! | GGCTGTTTTCCCTTTACTGG+AGG | + | chr7_4:9426356-9426375 | Msa1139260:CDS | 50.0% |
| GTATGGCTGTCTGTAAGCAG+TGG | + | chr7_4:9426397-9426416 | Msa1139260:CDS | 50.0% | |
| GGTTTCAGAAGTCCAGCTTC+TGG | + | chr7_4:9426669-9426688 | Msa1139260:CDS | 50.0% | |
| !! | TCTGGCTCTGTCCTGCAATC+AGG | + | chr7_4:9426648-9426667 | Msa1139260:CDS | 55.0% |
| GTGTCTCTGTGATGGTTGGG+CGG | + | chr7_4:9426796-9426815 | Msa1139260:CDS | 55.0% | |
| GGTAGCCAGGGGATATGTCT+AGG | - | chr7_4:9426911-9426930 | None:intergenic | 55.0% | |
| AGATATCCATGCCCGGATGC+CGG | - | chr7_4:9426943-9426962 | None:intergenic | 55.0% | |
| !! | TCTGGCTCTGTCCTGCAATC+AGG | + | chr7_4:9426648-9426667 | Msa1139260:CDS | 55.0% |
| GTGTCTCTGTGATGGTTGGG+CGG | + | chr7_4:9426796-9426815 | Msa1139260:CDS | 55.0% | |
| GGTAGCCAGGGGATATGTCT+AGG | - | chr7_4:9426911-9426930 | None:intergenic | 55.0% | |
| AGATATCCATGCCCGGATGC+CGG | - | chr7_4:9426943-9426962 | None:intergenic | 55.0% | |
| CTCTTCTCGGAAGCGGTGTC+TGG | + | chr7_4:9426630-9426649 | Msa1139260:CDS | 60.0% | |
| CTCTGTGATGGTTGGGCGGA+AGG | + | chr7_4:9426800-9426819 | Msa1139260:CDS | 60.0% | |
| GGGCAAAAAGGGGTAGCCAG+GGG | - | chr7_4:9426922-9426941 | None:intergenic | 60.0% | |
| CGGGCAAAAAGGGGTAGCCA+GGG | - | chr7_4:9426923-9426942 | None:intergenic | 60.0% | |
| ! | CCTGGCTACCCCTTTTTGCC+CGG | + | chr7_4:9426921-9426940 | Msa1139260:CDS | 60.0% |
| ! | ACCCCTTTTTGCCCGGCATC+CGG | + | chr7_4:9426928-9426947 | Msa1139260:CDS | 60.0% |
| GATATCCATGCCCGGATGCC+GGG | - | chr7_4:9426942-9426961 | None:intergenic | 60.0% | |
| CTCTTCTCGGAAGCGGTGTC+TGG | + | chr7_4:9426630-9426649 | Msa1139260:CDS | 60.0% | |
| CTCTGTGATGGTTGGGCGGA+AGG | + | chr7_4:9426800-9426819 | Msa1139260:CDS | 60.0% | |
| GGGCAAAAAGGGGTAGCCAG+GGG | - | chr7_4:9426922-9426941 | None:intergenic | 60.0% | |
| CGGGCAAAAAGGGGTAGCCA+GGG | - | chr7_4:9426923-9426942 | None:intergenic | 60.0% | |
| ! | CCTGGCTACCCCTTTTTGCC+CGG | + | chr7_4:9426921-9426940 | Msa1139260:CDS | 60.0% |
| ! | ACCCCTTTTTGCCCGGCATC+CGG | + | chr7_4:9426928-9426947 | Msa1139260:CDS | 60.0% |
| GATATCCATGCCCGGATGCC+GGG | - | chr7_4:9426942-9426961 | None:intergenic | 60.0% | |
| CCGGGCAAAAAGGGGTAGCC+AGG | - | chr7_4:9426924-9426943 | None:intergenic | 65.0% | |
| CCCGGATGCCGGGCAAAAAG+GGG | - | chr7_4:9426932-9426951 | None:intergenic | 65.0% | |
| ! | CCCCTTTTTGCCCGGCATCC+GGG | + | chr7_4:9426929-9426948 | Msa1139260:CDS | 65.0% |
| GCCCGGATGCCGGGCAAAAA+GGG | - | chr7_4:9426933-9426952 | None:intergenic | 65.0% | |
| TGCCCGGATGCCGGGCAAAA+AGG | - | chr7_4:9426934-9426953 | None:intergenic | 65.0% | |
| ! | TTTTGCCCGGCATCCGGGCA+TGG | + | chr7_4:9426934-9426953 | Msa1139260:CDS | 65.0% |
| CCGGGCAAAAAGGGGTAGCC+AGG | - | chr7_4:9426924-9426943 | None:intergenic | 65.0% | |
| CCCGGATGCCGGGCAAAAAG+GGG | - | chr7_4:9426932-9426951 | None:intergenic | 65.0% | |
| ! | CCCCTTTTTGCCCGGCATCC+GGG | + | chr7_4:9426929-9426948 | Msa1139260:CDS | 65.0% |
| GCCCGGATGCCGGGCAAAAA+GGG | - | chr7_4:9426933-9426952 | None:intergenic | 65.0% | |
| TGCCCGGATGCCGGGCAAAA+AGG | - | chr7_4:9426934-9426953 | None:intergenic | 65.0% | |
| ! | TTTTGCCCGGCATCCGGGCA+TGG | + | chr7_4:9426934-9426953 | Msa1139260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 9426333 | 9427088 | 9426333 | ID=Msa1139260;Name=Msa1139260 |
| chr7_4 | mRNA | 9426333 | 9427088 | 9426333 | ID=Msa1139260-mRNA-1;Parent=Msa1139260;Name=Msa1139260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|-1|0|1|-1|1|1|0|251 |
| chr7_4 | exon | 9426333 | 9427088 | 9426333 | ID=Msa1139260-mRNA-1:exon:2441;Parent=Msa1139260-mRNA-1 |
| chr7_4 | CDS | 9426333 | 9427088 | 9426333 | ID=Msa1139260-mRNA-1:cds;Parent=Msa1139260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
