AlfalfaGEDB | Msa1139260

M. sativa cultivar zhongmu-4 / Msa1139260

KEGG: -
GO: GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF12937.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139260	XP_024627188.1	98.805	251	3	0	1	251	1	251	0.0	513

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139260	sp\|Q9FL82\|FB270_ARATH	66.142	254	81	3	1	251	1	252	3.48e-121	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139260	B7FID8	98.805	251	3	0	1	251	1	251	0.0	513

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0039270	Msa1139260	0.803522	3.348665e-49	-8.615850e-47
Msa0181740	Msa1139260	-0.805419	1.347218e-49	-8.615850e-47
Msa0383570	Msa1139260	-0.800109	1.681399e-48	-8.615850e-47
Msa0446480	Msa1139260	-0.802681	4.998357e-49	-8.615850e-47
Msa0482020	Msa1139260	-0.822995	1.757602e-53	-8.615850e-47
Msa0504740	Msa1139260	-0.802217	6.229418e-49	-8.615850e-47
Msa1008320	Msa1139260	0.973146	6.164797e-136	-8.615850e-47
Msa1139260	Msa1209390	-0.824207	9.149061e-54	-8.615850e-47
Msa1139260	Msa1292560	0.800859	1.182480e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139260	MtrunA17_Chr7g0218771	98.805	251	3	0	1	251	1	251	0.0	513

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139260	AT5G39250.2	66.142	254	81	3	1	251	1	252	3.54e-122	348
Msa1139260	AT5G39250.1	66.142	254	81	3	1	251	1	252	3.54e-122	348

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Find 55 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATCAAAGGAAATTCT+CGG	0.464319	7_4:-9426570	None:intergenic
AACTTGTAGTAGGTTTCAGT+AGG	0.606356	7_4:-9426501	None:intergenic
AAGATCTTATGGATGTATTT+GGG	0.377784	7_4:+9426988	Msa1139260:CDS
AAGTCACAAACTCCAGAAGC+TGG	0.569927	7_4:-9426681	None:intergenic
AATGTATGTGTGCCAATAGA+TGG	0.548994	7_4:+9426451	Msa1139260:CDS
ACGGTCATCATATAGAGCGT+TGG	0.609824	7_4:+9426875	Msa1139260:CDS
ACGTTGTTGGCGTTTATGGA+AGG	0.533624	7_4:-9426532	None:intergenic
AGAGGGAAGTGAAGATCTTA+TGG	0.307374	7_4:+9426977	Msa1139260:CDS
AGATATCCATGCCCGGATGC+CGG	0.435632	7_4:-9426940	None:intergenic
AGATCAACACCCTCCAGTAA+AGG	0.495696	7_4:-9426366	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAACTCCAAATCATCAA+AGG	-	chr7_4:9426583-9426602	None:intergenic	30.0%
TGAAGATATACTTCTCTTCT+CGG	+	chr7_4:9426617-9426636	Msa1139260:CDS	30.0%
CCATCTTCGATTATATTGAA+CGG	+	chr7_4:9426856-9426875	Msa1139260:CDS	30.0%
GAAGATCTTATGGATGTATT+TGG	+	chr7_4:9426987-9427006	Msa1139260:CDS	30.0%
GAAAAACTCCAAATCATCAA+AGG	-	chr7_4:9426583-9426602	None:intergenic	30.0%
TGAAGATATACTTCTCTTCT+CGG	+	chr7_4:9426617-9426636	Msa1139260:CDS	30.0%
CCATCTTCGATTATATTGAA+CGG	+	chr7_4:9426856-9426875	Msa1139260:CDS	30.0%
GAAGATCTTATGGATGTATT+TGG	+	chr7_4:9426987-9427006	Msa1139260:CDS	30.0%
TGTTGATCTTGCTTCTTGTA+TGG	+	chr7_4:9426380-9426399	Msa1139260:CDS	35.0%
AATGTATGTGTGCCAATAGA+TGG	+	chr7_4:9426451-9426470	Msa1139260:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	9426333	9427088	9426333	ID=Msa1139260;Name=Msa1139260
chr7_4	mRNA	9426333	9427088	9426333	ID=Msa1139260-mRNA-1;Parent=Msa1139260;Name=Msa1139260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|251
chr7_4	exon	9426333	9427088	9426333	ID=Msa1139260-mRNA-1:exon:2441;Parent=Msa1139260-mRNA-1
chr7_4	CDS	9426333	9427088	9426333	ID=Msa1139260-mRNA-1:cds;Parent=Msa1139260-mRNA-1

Gene Sequence

>Msa1139260

ATGGAATCTGAAGAAGTTTTGAAGGCTGTTTTCCCTTTACTGGAGGGTGTTGATCTTGCTTCTTGTATGGCTGTCTGTAAGCAGTGGAATGACATAGCTAAAGACGATTTCTTTTGGAAATGTATGTGTGCCAATAGATGGCCATCAATCTGCAAGCGACCTAATCCTCCTACTGAAACCTACTACAAGTTATATAAAACCTTCCATAAACGCCAACAACGTAGAACTCTTCTCCCTCCGAGAATTTCCTTTGATGATTTGGAGTTTTTCATTGACATTTGGGCTGAAGATATACTTCTCTTCTCGGAAGCGGTGTCTGGCTCTGTCCTGCAATCAGGTTTCAGAAGTCCAGCTTCTGGAGTTTGTGACTTGCTCAAATATCACCTCGAGAGTTCTGAATACAAGATGACTTTTCCGGTTGAACCTAGGTTTACTATCCCTTCAGAACAAAATCAGAATGTTAGTGTCTCTGTGATGGTTGGGCGGAAGGATACAAATAAGGTTGCATGCATCATAAACAAGTCCATCTTCGATTATATTGAACGGTCATCATATAGAGCGTTGGCATATGATTACCTAGACATATCCCCTGGCTACCCCTTTTTGCCCGGCATCCGGGCATGGATATCTTTGCTATTCATGGAAGAGGGAAGTGAAGATCTTATGGATGTATTTGGGATCCAAATGGATTTCTGTGATGTGGCAAATTCTAAGGAAGAAGTCTTGTGGCTATTGGACATGCTAGATTGGAAGTGA

Protein sequence

>Msa1139260

MESEEVLKAVFPLLEGVDLASCMAVCKQWNDIAKDDFFWKCMCANRWPSICKRPNPPTETYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAEDILLFSEAVSGSVLQSGFRSPASGVCDLLKYHLESSEYKMTFPVEPRFTIPSEQNQNVSVSVMVGRKDTNKVACIINKSIFDYIERSSYRALAYDYLDISPGYPFLPGIRAWISLLFMEEGSEDLMDVFGIQMDFCDVANSKEEVLWLLDMLDWK*