AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0446480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446480 MtrunA17_Chr3g0087481 94.894 235 11 1 1 234 1 235 3.70e-161 445
Msa0446480 MtrunA17_Chr1g0177101 42.614 176 101 0 59 234 108 283 1.12e-44 152
Msa0446480 MtrunA17_Chr7g0267571 33.333 279 140 5 2 234 10 288 3.05e-44 150
Msa0446480 MtrunA17_Chr1g0181111 36.078 255 136 5 4 234 21 272 1.07e-34 125
Msa0446480 MtrunA17_Chr3g0116631 40.212 189 109 2 47 234 97 282 1.14e-34 125
Msa0446480 MtrunA17_Chr3g0116631 39.241 79 48 0 58 136 205 283 6.38e-13 66.6
Msa0446480 MtrunA17_Chr1g0168601 35.052 194 112 2 47 234 44 229 4.40e-34 122
Msa0446480 MtrunA17_Chr4g0058151 38.286 175 103 2 60 234 123 292 4.91e-31 115
Msa0446480 MtrunA17_Chr4g0058151 44.872 78 43 0 60 137 217 294 1.09e-16 77.4
Msa0446480 MtrunA17_Chr4g0070231 29.381 194 111 3 61 232 133 322 1.56e-17 80.5
Msa0446480 MtrunA17_Chr4g0070231 31.492 181 110 4 54 234 41 207 9.71e-17 78.6
Msa0446480 MtrunA17_Chr6g0466451 27.619 210 127 5 33 228 79 277 1.11e-15 75.5
Msa0446480 MtrunA17_Chr6g0465631 27.619 210 127 5 33 228 79 277 1.20e-15 75.5
Msa0446480 MtrunA17_Chr8g0344491 29.834 181 113 4 54 234 57 223 2.18e-15 74.7
Msa0446480 MtrunA17_Chr8g0344491 28.713 202 117 5 54 232 142 339 6.87e-14 70.1
Msa0446480 MtrunA17_Chr4g0044541 28.070 171 111 2 61 231 36 194 3.67e-15 74.3
Msa0446480 MtrunA17_Chr4g0044541 30.366 191 124 4 50 234 204 391 2.43e-13 68.9
Msa0446480 MtrunA17_Chr1g0179701 30.303 198 124 6 44 234 225 415 7.51e-15 73.2
Msa0446480 MtrunA17_Chr1g0179701 26.455 189 127 2 45 233 48 224 1.02e-13 70.1
Msa0446480 MtrunA17_Chr3g0139111 28.649 185 110 3 54 234 55 221 8.11e-15 72.8
Msa0446480 MtrunA17_Chr3g0139111 25.773 194 117 3 61 231 147 336 4.48e-13 67.8
Msa0446480 MtrunA17_Chr3g0120721 25.543 184 120 4 54 234 13 182 1.98e-14 71.6
Msa0446480 MtrunA17_Chr3g0110211 27.586 174 113 2 62 234 28 189 5.21e-14 70.5
Msa0446480 MtrunA17_Chr6g0449481 25.773 194 119 5 48 234 34 209 5.86e-14 70.1
Msa0446480 MtrunA17_Chr1g0153181 28.986 207 136 6 33 231 184 387 6.08e-14 70.5
Msa0446480 MtrunA17_Chr1g0153181 24.561 171 117 2 61 231 34 192 3.55e-12 65.5
Msa0446480 MtrunA17_Chr0c09g0493511 31.313 198 112 9 43 228 105 290 9.38e-14 70.1
Msa0446480 MtrunA17_Chr1g0201151 30.102 196 112 5 44 224 193 378 2.98e-13 68.6
Msa0446480 MtrunA17_Chr3g0132451 25.701 214 143 6 27 231 50 256 3.49e-13 67.4
Msa0446480 MtrunA17_Chr5g0411091 31.429 175 113 5 59 231 96 265 3.49e-13 67.8
Msa0446480 MtrunA17_Chr6g0466501 25.962 208 123 6 25 231 8 185 4.44e-13 68.2
Msa0446480 MtrunA17_Chr6g0466501 30.303 198 114 9 43 228 187 372 8.82e-11 61.2
Msa0446480 MtrunA17_Chr7g0265341 28.571 189 108 5 61 234 251 427 2.02e-12 66.2
Msa0446480 MtrunA17_Chr7g0265341 28.324 173 112 4 61 233 72 232 4.28e-12 65.1
Msa0446480 MtrunA17_Chr7g0265341 27.624 181 116 5 57 234 156 324 3.75e-11 62.4
Msa0446480 MtrunA17_Chr3g0134141 24.561 171 117 2 61 231 26 184 4.69e-12 65.1
Msa0446480 MtrunA17_Chr3g0134141 31.111 180 115 5 61 234 205 381 8.46e-12 64.3
Msa0446480 MtrunA17_Chr2g0328791 24.719 178 127 2 58 234 14 185 7.61e-12 64.3
Msa0446480 MtrunA17_Chr6g0465751 30.303 198 114 9 43 228 187 372 2.37e-11 62.8
Msa0446480 MtrunA17_Chr5g0402191 27.119 177 114 5 59 234 4 166 3.22e-11 62.4
Msa0446480 MtrunA17_Chr8g0375101 25.568 176 118 3 59 234 4 166 4.52e-11 61.6
Msa0446480 MtrunA17_Chr3g0135111 25.668 187 122 6 60 234 11 192 6.29e-11 61.2
Msa0446480 MtrunA17_Chr4g0035051 34.940 83 54 0 152 234 2 84 7.84e-11 57.8
Msa0446480 MtrunA17_Chr6g0465691 30.303 198 114 9 43 228 105 290 8.39e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446480 AT3G52150.2 62.996 227 77 4 15 234 27 253 1.20e-93 275
Msa0446480 AT3G52150.1 62.996 227 77 4 15 234 27 253 1.20e-93 275
Msa0446480 AT3G52380.1 41.885 191 103 2 50 234 107 295 1.42e-45 155
Msa0446480 AT1G60000.1 36.327 245 132 3 7 234 16 253 2.21e-39 137
Msa0446480 AT2G37220.1 33.333 255 121 5 15 234 40 280 4.16e-36 129
Msa0446480 AT5G50250.1 38.122 181 107 2 54 234 108 283 1.14e-34 125
Msa0446480 AT5G50250.1 40.741 81 48 0 57 137 205 285 1.11e-13 69.3
Msa0446480 AT4G24770.1 38.830 188 109 3 48 234 138 320 2.13e-31 117
Msa0446480 AT4G24770.1 46.341 82 43 1 56 137 242 322 3.43e-17 79.3
Msa0446480 AT4G24770.2 38.830 188 109 3 48 234 138 320 2.13e-31 117
Msa0446480 AT4G24770.2 46.341 82 43 1 56 137 242 322 3.43e-17 79.3
Msa0446480 AT1G01080.1 32.487 197 121 3 46 234 95 287 4.25e-23 95.1
Msa0446480 AT2G35410.1 35.326 184 112 4 50 229 86 266 6.92e-23 94.7
Msa0446480 AT1G01080.2 32.323 198 121 4 46 234 95 288 8.08e-22 91.7
Msa0446480 AT1G01080.3 32.258 186 114 3 46 223 95 276 7.33e-21 89.0
Msa0446480 AT1G22760.1 33.846 195 115 6 40 224 207 397 1.43e-18 84.7
Msa0446480 AT3G13224.3 28.649 185 109 5 57 234 8 176 2.10e-17 80.5
Msa0446480 AT1G71770.1 33.333 195 116 6 40 224 217 407 2.29e-17 81.3
Msa0446480 AT1G71770.1 28.070 171 110 3 61 231 61 218 3.52e-12 65.9
Msa0446480 AT1G71770.2 33.333 195 116 6 40 224 217 407 2.29e-17 81.3
Msa0446480 AT1G71770.2 28.070 171 110 3 61 231 61 218 3.52e-12 65.9
Msa0446480 AT3G13224.1 29.310 174 100 5 54 220 14 171 8.48e-17 77.0
Msa0446480 AT3G14100.1 32.044 181 109 4 54 234 54 220 1.02e-16 79.0
Msa0446480 AT3G14100.1 28.571 182 104 3 61 220 146 323 1.00e-14 73.2
Msa0446480 AT3G13224.2 28.191 188 112 5 54 234 14 185 5.19e-16 76.3
Msa0446480 AT3G16380.1 31.280 211 132 5 32 234 174 379 6.29e-16 76.6
Msa0446480 AT3G16380.1 29.775 178 107 5 61 234 114 277 2.25e-12 66.2
Msa0446480 AT1G54080.1 30.387 181 112 4 54 234 58 224 2.41e-15 74.7
Msa0446480 AT1G54080.1 27.835 194 113 4 61 231 150 339 1.69e-13 69.3
Msa0446480 AT4G09040.1 24.896 241 156 6 12 234 33 266 2.60e-15 73.9
Msa0446480 AT1G49760.1 29.070 172 110 2 61 232 47 206 3.71e-15 74.7
Msa0446480 AT1G49760.1 31.361 169 109 3 61 224 226 392 1.90e-13 69.7
Msa0446480 AT1G49760.1 28.723 188 120 5 52 234 121 299 2.27e-12 66.2
Msa0446480 AT1G49760.2 29.070 172 110 2 61 232 47 206 3.71e-15 74.7
Msa0446480 AT1G49760.2 31.361 169 109 3 61 224 226 392 1.90e-13 69.7
Msa0446480 AT1G49760.2 28.723 188 120 5 52 234 121 299 2.27e-12 66.2
Msa0446480 AT4G09040.2 26.263 198 132 5 41 234 19 206 7.27e-15 72.0
Msa0446480 AT2G23350.1 32.768 177 110 4 61 231 227 400 8.96e-15 73.6
Msa0446480 AT2G23350.1 31.492 181 109 4 57 234 132 300 7.07e-13 67.8
Msa0446480 AT1G17370.2 30.387 181 112 4 54 234 49 215 1.19e-14 72.8
Msa0446480 AT1G17370.2 26.562 192 117 4 61 232 141 328 5.66e-14 70.9
Msa0446480 AT1G17370.1 30.387 181 112 4 54 234 49 215 1.33e-14 72.8
Msa0446480 AT1G17370.1 26.154 195 117 4 61 232 141 331 1.39e-13 69.7
Msa0446480 AT2G36660.1 30.114 176 116 3 61 231 203 376 1.82e-14 72.4
Msa0446480 AT2G36660.1 28.652 178 115 3 56 233 21 186 9.39e-13 67.4
Msa0446480 AT1G54080.2 30.270 185 111 5 54 234 58 228 2.68e-14 72.0
Msa0446480 AT1G54080.2 29.940 167 90 4 88 231 181 343 3.05e-12 65.9
Msa0446480 AT4G34110.1 31.319 182 106 5 61 231 217 390 1.61e-13 69.7
Msa0446480 AT4G34110.1 29.787 188 110 6 56 234 116 290 3.57e-13 68.9
Msa0446480 AT4G34110.1 25.581 172 116 2 61 232 38 197 1.22e-12 67.0
Msa0446480 AT2G18510.1 27.429 175 114 2 61 234 27 189 3.22e-13 68.6
Msa0446480 AT3G53460.4 43.421 76 43 0 159 234 279 354 5.93e-13 67.8
Msa0446480 AT3G53460.4 38.961 77 47 0 60 136 279 355 1.74e-11 63.5
Msa0446480 AT3G53460.1 43.421 76 43 0 159 234 258 333 6.28e-13 67.4
Msa0446480 AT3G53460.1 44.304 79 44 0 60 138 100 178 2.42e-12 65.9
Msa0446480 AT3G53460.1 38.961 77 47 0 60 136 258 334 1.58e-11 63.5
Msa0446480 AT3G53460.3 43.421 76 43 0 159 234 258 333 6.28e-13 67.4
Msa0446480 AT3G53460.3 44.304 79 44 0 60 138 100 178 2.42e-12 65.9
Msa0446480 AT3G53460.3 38.961 77 47 0 60 136 258 334 1.58e-11 63.5
Msa0446480 AT3G53460.2 43.421 76 43 0 159 234 258 333 6.28e-13 67.4
Msa0446480 AT3G53460.2 44.304 79 44 0 60 138 100 178 2.42e-12 65.9
Msa0446480 AT3G53460.2 38.961 77 47 0 60 136 258 334 1.58e-11 63.5
Msa0446480 AT4G13860.1 43.836 73 41 0 159 231 4 76 8.67e-13 62.8
Msa0446480 AT4G13860.1 37.333 75 47 0 60 134 4 78 2.86e-11 58.5
Msa0446480 AT1G34140.1 31.492 181 114 5 61 234 121 298 1.31e-12 67.0
Msa0446480 AT5G40490.1 25.275 182 111 4 60 234 43 206 4.78e-12 65.1
Msa0446480 AT4G16280.3 28.743 167 100 4 60 221 121 273 5.42e-11 62.4
Msa0446480 AT4G16280.4 28.743 167 100 4 60 221 46 198 6.87e-11 62.0
Msa0446480 AT5G19350.1 23.034 178 129 2 58 234 23 193 7.43e-11 61.6
Msa0446480 AT5G19350.2 23.034 178 129 2 58 234 23 193 7.88e-11 61.6
Msa0446480 AT4G16280.2 28.743 167 100 4 60 221 121 273 9.17e-11 61.6

Find 65 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGAACCTCCAGTTGTTAA+AGG 0.234866 3_3:+22229295 None:intergenic
GGAAGAAGGTGTTGTCGTTT+TGG 0.283571 3_3:+22232928 None:intergenic
TGTTAACTGCAGTTGTTAGA+AGG 0.327875 3_3:-22228049 Msa0446480:intron
TGTATGATAAATACTCTAAA+AGG 0.332898 3_3:-22229545 Msa0446480:CDS
GCCAAGGTTTCACGGGTTCC+TGG 0.336172 3_3:-22229148 Msa0446480:CDS
TTTATCTTATGACAGCAAAT+TGG 0.336684 3_3:-22229352 Msa0446480:intron
ACAAGGTCTCAAAATCATTC+TGG 0.344549 3_3:+22227899 None:intergenic
ACCTCAAAATCCAGTGGTTT+CGG 0.344689 3_3:-22229124 Msa0446480:CDS
GATTGAATGAAGTAAGTAAC+TGG 0.344748 3_3:+22233045 None:intergenic
GCAGAAAATCCGAGTGAATA+AGG 0.353968 3_3:-22228026 Msa0446480:CDS
CAAGGTATATGTGGGAAATC+TGG 0.373394 3_3:-22229233 Msa0446480:CDS
TTTCCCACATATACCTTGTA+AGG 0.379798 3_3:+22229238 None:intergenic
ACCATGTTCTTGAACAATCT+TGG 0.384608 3_3:+22232775 None:intergenic
TATGGGATGGTTAAAATTGA+TGG 0.399722 3_3:+22227664 None:intergenic
CGTTATCTTGTTGGTGGTGT+TGG 0.404588 3_3:+22233100 None:intergenic
GCGGATTCCTCGGCCTGGAC+TGG 0.419149 3_3:+22229274 None:intergenic
TGCATCAGTGAATGTTCATA+AGG 0.419312 3_3:+22227735 None:intergenic
AGTTTATCTCGTTATCTTGT+TGG 0.430084 3_3:+22233091 None:intergenic
CTCTTAGTGCCAAGGTTTCA+CGG 0.433896 3_3:-22229156 Msa0446480:CDS
AACTGGAGGTTCGCCAGTCC+AGG 0.449340 3_3:-22229287 Msa0446480:CDS
GCATCAGTGAATGTTCATAA+GGG 0.471622 3_3:+22227736 None:intergenic
CCAAGGTTTCACGGGTTCCT+GGG 0.476496 3_3:-22229147 Msa0446480:CDS
CAGTCCTTACAAGGTATATG+TGG 0.476562 3_3:-22229242 Msa0446480:CDS
GTCTACAAATGCGGATTCCT+CGG 0.478263 3_3:+22229264 None:intergenic
TTATCTCGTTATCTTGTTGG+TGG 0.485113 3_3:+22233094 None:intergenic
ATTTGTAGACAGTCCTTACA+AGG 0.497965 3_3:-22229251 Msa0446480:CDS
AGAAGCCATTGTTTGTAATG+AGG 0.507143 3_3:+22233015 None:intergenic
TTGTTTGTAATGAGGAATTG+AGG 0.507578 3_3:+22233023 None:intergenic
GTTACTCTCATGAATCTCCT+TGG 0.507839 3_3:+22227956 None:intergenic
ACTGATGCAGAGGCAAAAGT+TGG 0.512603 3_3:-22227721 Msa0446480:three_prime_UTR
CCCAGGAACCCGTGAAACCT+TGG 0.513301 3_3:+22229147 None:intergenic
ATCTTATGACAGCAAATTGG+AGG 0.518029 3_3:-22229349 Msa0446480:intron
GGTTAAAATTGATGGATGAA+AGG 0.523734 3_3:+22227672 None:intergenic
TGCTGCGTTTGCATCTTCAA+CGG 0.527115 3_3:+22229491 Msa0446490:intron
GTCGTAACGACAAGGGAAGA+AGG 0.535775 3_3:+22232914 None:intergenic
AAGTGTTGTGAGTTAGAGAA+AGG 0.537007 3_3:+22232972 None:intergenic
AGTAACAAAGCCGAAACCAC+TGG 0.538663 3_3:+22229114 None:intergenic
TCTTAGTGCCAAGGTTTCAC+GGG 0.544466 3_3:-22229155 Msa0446480:CDS
AGCAAATGCTCTTAGTGCCA+AGG 0.546104 3_3:-22229164 Msa0446480:CDS
AGGTTCGCCAGTCCAGGCCG+AGG 0.546178 3_3:-22229281 Msa0446480:CDS
GCCAAGATTGTTCAAGAACA+TGG 0.550336 3_3:-22232776 Msa0446480:CDS
CAATTCCTCATTACAAACAA+TGG 0.551662 3_3:-22233020 Msa0446480:exon
GTTAACTGCAGTTGTTAGAA+GGG 0.555240 3_3:-22228048 Msa0446480:intron
CAAATGCGGATTCCTCGGCC+TGG 0.555822 3_3:+22229269 None:intergenic
ACGTAAAGCTTTCTAACAGC+AGG 0.562554 3_3:+22232836 None:intergenic
TTTGTCAGCTTAGAGTTCCA+AGG 0.564425 3_3:-22227973 Msa0446480:three_prime_UTR
AAGTAAGTAACTGGGAGTAG+TGG 0.573519 3_3:+22233054 None:intergenic
GGTTTCTTCTGAACAAGCCA+CGG 0.601130 3_3:-22232867 Msa0446480:CDS
AATTGATGGATGAAAGGCAA+TGG 0.605109 3_3:+22227678 None:intergenic
TCTTATGACAGCAAATTGGA+GGG 0.605874 3_3:-22229348 Msa0446480:intron
GCAGCAGCTGAGAAACTCAA+TGG 0.608545 3_3:-22229474 Msa0446480:CDS
ATTGAATGAAGTAAGTAACT+GGG 0.617990 3_3:+22233046 None:intergenic
GCTGTTAGAAAGCTTTACGT+TGG 0.619231 3_3:-22232833 Msa0446480:CDS
ATGAACATTCACTGATGCAG+AGG 0.619265 3_3:-22227731 Msa0446480:three_prime_UTR
AACGACGTGTCGTAACGACA+AGG 0.638429 3_3:+22232906 None:intergenic
CCTGGGACCTCAAAATCCAG+TGG 0.638570 3_3:-22229130 Msa0446480:CDS
AGTCCTTACAAGGTATATGT+GGG 0.639932 3_3:-22229241 Msa0446480:CDS
ACGACGTGTCGTAACGACAA+GGG 0.641069 3_3:+22232907 None:intergenic
GTAAGGACTGTCTACAAATG+CGG 0.643041 3_3:+22229255 None:intergenic
TTCTTCTGAACAAGCCACGG+TGG 0.661174 3_3:-22232864 Msa0446480:CDS
TAACAACAATAGACACAATG+TGG 0.677279 3_3:+22227811 None:intergenic
TTGTAACAAATGCAAAACGA+CGG 0.700893 3_3:+22229520 Msa0446490:intron
TAAATGTGAAGAAAGTAACA+AGG 0.704256 3_3:+22227882 None:intergenic
TCATCATTACTAACAGTACG+AGG 0.729772 3_3:+22232803 None:intergenic
AACAGCAGGAGAATCCACCG+TGG 0.836989 3_3:+22232850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTAAGATACATATA+TGG + chr3_3:22229400-22229419 Msa0446490:intron 10.0%
!! TACAAATTAAAAATGATAAA+AGG + chr3_3:22230171-22230190 Msa0446490:intron 10.0%
!! TATATGTTGAAAAATAAAAA+GGG + chr3_3:22232014-22232033 None:intergenic 10.0%
!! ATATATGTTGAAAAATAAAA+AGG + chr3_3:22232015-22232034 None:intergenic 10.0%
!!! TTTATATTACATTTTTCTTT+TGG - chr3_3:22232924-22232943 Msa0446480:CDS 10.0%
!!! TGATTTTGTGAAATTAATTT+TGG - chr3_3:22228141-22228160 Msa0446480:intron 15.0%
!!! AAATTAATTTTGGTTGAAAT+GGG - chr3_3:22228151-22228170 Msa0446480:intron 15.0%
!!! TTGAAATAGTTTGTAAAATT+AGG - chr3_3:22228376-22228395 Msa0446480:intron 15.0%
!! TATGATAACAAGTATATTTA+AGG + chr3_3:22228575-22228594 None:intergenic 15.0%
!!! TAATTTTTCAAAATGAAGTT+GGG + chr3_3:22228780-22228799 None:intergenic 15.0%
!!! TTAATTTTTCAAAATGAAGT+TGG + chr3_3:22228781-22228800 None:intergenic 15.0%
!!! TTCTTTTAAAAATACTTCAA+AGG - chr3_3:22229039-22229058 Msa0446480:intron 15.0%
!!! TTTTAACTATTGTAATTTGT+AGG - chr3_3:22229596-22229615 Msa0446480:intron 15.0%
!!! TTTTGATATTAATAGAAGTT+GGG + chr3_3:22229763-22229782 Msa0446490:intron 15.0%
!! AATACAAAAGAAAATCATAT+GGG + chr3_3:22229991-22230010 Msa0446490:intron 15.0%
!!! TAAAGAAGTATATTTCAAAA+TGG - chr3_3:22230017-22230036 Msa0446480:intron 15.0%
!! GGTTACATTAATATTAAAAT+AGG - chr3_3:22230611-22230630 Msa0446480:intron 15.0%
!! TAAATCAAAATTCTGTTAAA+GGG + chr3_3:22230825-22230844 Msa0446490:CDS 15.0%
!! TTAAATCAAAATTCTGTTAA+AGG + chr3_3:22230826-22230845 Msa0446490:CDS 15.0%
!!! TTTTTTTATGATTGATTCAT+AGG - chr3_3:22231216-22231235 Msa0446480:intron 15.0%
!!! ATTAACAATTTTCAATTTCA+GGG + chr3_3:22232227-22232246 None:intergenic 15.0%
!! CACATACAAAAAAAAAAAAA+TGG + chr3_3:22233022-22233041 None:intergenic 15.0%
!!! TTTTTTTTTTGTATGTGAAT+TGG - chr3_3:22233025-22233044 Msa0446480:five_prime_UTR 15.0%
!!! TAAATTTTGTGTTTGAACTT+TGG - chr3_3:22228076-22228095 Msa0446480:intron 20.0%
!!! AAATTTTGTGTTTGAACTTT+GGG - chr3_3:22228077-22228096 Msa0446480:intron 20.0%
!!! GAAATTAATTTTGGTTGAAA+TGG - chr3_3:22228150-22228169 Msa0446480:intron 20.0%
!! ACAATAAGTAAATACTTGTA+AGG + chr3_3:22228603-22228622 None:intergenic 20.0%
!! AATGCATAAATTGAATAGAT+AGG - chr3_3:22229011-22229030 Msa0446480:intron 20.0%
!! TTAAAACATTTCTTCATAAG+CGG + chr3_3:22229235-22229254 None:intergenic 20.0%
!! TAATTTCATTTAACAAGAGA+AGG - chr3_3:22229340-22229359 Msa0446480:CDS 20.0%
!!! GTTTTGATATTAATAGAAGT+TGG + chr3_3:22229764-22229783 Msa0446490:intron 20.0%
!! AAAACAAAACAAATCAAAGA+AGG - chr3_3:22229789-22229808 Msa0446480:intron 20.0%
!! CAATACAAAAGAAAATCATA+TGG + chr3_3:22229992-22230011 Msa0446490:intron 20.0%
!!! CATTTTTAATTTGTAGAAGT+TGG - chr3_3:22230176-22230195 Msa0446480:intron 20.0%
!!! GATTTTCTGTTTTAAGTTTA+TGG - chr3_3:22230338-22230357 Msa0446480:intron 20.0%
!!! ATGAATTTTACTCCTTTATA+AGG - chr3_3:22230975-22230994 Msa0446480:intron 20.0%
!! TGTATGATAAATACTCTAAA+AGG - chr3_3:22231242-22231261 Msa0446480:intron 20.0%
!! ATAAAAAAACAGTCTACAAA+GGG - chr3_3:22231907-22231926 Msa0446480:intron 20.0%
!! AACATTGAAAAAATGTTAGT+AGG - chr3_3:22231935-22231954 Msa0446480:intron 20.0%
!!! GATTAACAATTTTCAATTTC+AGG + chr3_3:22232228-22232247 None:intergenic 20.0%
!! GAAATTGAAAATTGTTAATC+TGG - chr3_3:22232228-22232247 Msa0446480:intron 20.0%
!! TGAAAACAAATCTAAACAAA+GGG + chr3_3:22232259-22232278 None:intergenic 20.0%
!! TTGAAAACAAATCTAAACAA+AGG + chr3_3:22232260-22232279 None:intergenic 20.0%
!! ATTATACATGAAAATCAACA+AGG + chr3_3:22232505-22232524 None:intergenic 20.0%
!! CATAAATCTATGAAAATTTG+AGG + chr3_3:22232531-22232550 None:intergenic 20.0%
!! TTACAATTTCTATCATGATT+TGG - chr3_3:22232613-22232632 Msa0446480:intron 20.0%
!! TACAATTTCTATCATGATTT+GGG - chr3_3:22232614-22232633 Msa0446480:intron 20.0%
! ATTGAATGAAGTAAGTAACT+GGG + chr3_3:22227744-22227763 None:intergenic 25.0%
!! AATGGTGTTAAATTTCTTGT+GGG - chr3_3:22228307-22228326 Msa0446480:intron 25.0%
! TAGGTTTGATTAAACTTCAT+TGG - chr3_3:22228395-22228414 Msa0446480:intron 25.0%
! GATATATTGAATGACTATTG+TGG + chr3_3:22228459-22228478 None:intergenic 25.0%
!!! CACTATTTTGACTATCAAAA+TGG - chr3_3:22228674-22228693 Msa0446480:intron 25.0%
!!! TTGGAATTTTGATACATTGA+AGG - chr3_3:22228713-22228732 Msa0446480:intron 25.0%
! GTAAACTGATGATAATTGAT+TGG - chr3_3:22228867-22228886 Msa0446480:intron 25.0%
! ATGATAATTGATTGGATGTT+GGG - chr3_3:22228875-22228894 Msa0446480:intron 25.0%
!! TCACCTTAATTTGGTTAAAA+TGG - chr3_3:22228941-22228960 Msa0446480:intron 25.0%
!! CACCTTAATTTGGTTAAAAT+GGG - chr3_3:22228942-22228961 Msa0446480:intron 25.0%
!!! AACCCATTTTAACCAAATTA+AGG + chr3_3:22228947-22228966 None:intergenic 25.0%
!!! AAAATACTTCAAAGGTATCT+TGG - chr3_3:22229047-22229066 Msa0446480:intron 25.0%
!!! AAAGGTATCTTGGTTAAAAT+GGG - chr3_3:22229057-22229076 Msa0446480:intron 25.0%
! TATAACATTCACTCTCTTAT+TGG + chr3_3:22229154-22229173 None:intergenic 25.0%
! AAATGAAACCAGATAGATAA+AGG + chr3_3:22229438-22229457 Msa0446490:intron 25.0%
!! TAGTCGCATATTTTGTATAA+TGG - chr3_3:22229458-22229477 Msa0446480:intron 25.0%
! AAGAAAATCATATGGGTTTA+GGG + chr3_3:22229984-22230003 Msa0446490:intron 25.0%
! AAAGAAAATCATATGGGTTT+AGG + chr3_3:22229985-22230004 Msa0446490:intron 25.0%
!! AGAAGTATATTTCAAAATGG+CGG - chr3_3:22230020-22230039 Msa0446480:intron 25.0%
!!! TTTCAGTTGTTTGTTTTAGA+AGG - chr3_3:22230045-22230064 Msa0446480:intron 25.0%
!!! TTGTTTGTTTTAGAAGGATT+TGG - chr3_3:22230051-22230070 Msa0446480:intron 25.0%
!!! TGTTTGTTTTAGAAGGATTT+GGG - chr3_3:22230052-22230071 Msa0446480:intron 25.0%
! ATTGAAAAGCAACATAGAAA+TGG - chr3_3:22230229-22230248 Msa0446480:intron 25.0%
! TTGAAAAGCAACATAGAAAT+GGG - chr3_3:22230230-22230249 Msa0446480:intron 25.0%
!!! AATGGGATAATGTTTTTAGT+TGG - chr3_3:22230247-22230266 Msa0446480:intron 25.0%
! TAGGAGAATTTAGATTTCAA+TGG - chr3_3:22230630-22230649 Msa0446480:intron 25.0%
! AGGAGAATTTAGATTTCAAT+GGG - chr3_3:22230631-22230650 Msa0446480:intron 25.0%
! TAAAGGAGTAAAATTCATTG+AGG + chr3_3:22230973-22230992 Msa0446490:CDS 25.0%
! TAGGATTTGTCATATAACTT+GGG - chr3_3:22231072-22231091 Msa0446480:intron 25.0%
! AAAACATACAAAGAAAGTTG+AGG + chr3_3:22231137-22231156 None:intergenic 25.0%
! CTAAATTGTTGAATGAACAT+TGG + chr3_3:22231385-22231404 None:intergenic 25.0%
! CAATGTTCATTCAACAATTT+AGG - chr3_3:22231383-22231402 Msa0446480:intron 25.0%
!! CAACAATTTAGGTTTCTTAA+AGG - chr3_3:22231394-22231413 Msa0446480:intron 25.0%
! TTTATCTTATGACAGCAAAT+TGG - chr3_3:22231435-22231454 Msa0446480:intron 25.0%
!! TTTCCGAGAAGAAATTTTTA+AGG + chr3_3:22231602-22231621 None:intergenic 25.0%
! GATAAAAAAACAGTCTACAA+AGG - chr3_3:22231906-22231925 Msa0446480:intron 25.0%
! AATAACAATATACACACTCT+TGG + chr3_3:22232121-22232140 None:intergenic 25.0%
! ATGAATCTTACAAATACCAA+TGG - chr3_3:22232280-22232299 Msa0446480:intron 25.0%
!! TGATATAGTCATACAGTTTT+AGG - chr3_3:22232375-22232394 Msa0446480:intron 25.0%
! GTAAGTCATGTTAACATATT+TGG + chr3_3:22232597-22232616 None:intergenic 25.0%
! ACAATTTCTATCATGATTTG+GGG - chr3_3:22232615-22232634 Msa0446480:intron 25.0%
! TAAATGTGAAGAAAGTAACA+AGG + chr3_3:22232908-22232927 None:intergenic 25.0%
AGTTTATCTCGTTATCTTGT+TGG + chr3_3:22227699-22227718 None:intergenic 30.0%
GATTGAATGAAGTAAGTAAC+TGG + chr3_3:22227745-22227764 None:intergenic 30.0%
TTGTTTGTAATGAGGAATTG+AGG + chr3_3:22227767-22227786 None:intergenic 30.0%
CAATTCCTCATTACAAACAA+TGG - chr3_3:22227767-22227786 Msa0446480:three_prime_UTR 30.0%
!!! TCGTTTTAGAAAACACTTTG+TGG - chr3_3:22227899-22227918 Msa0446480:three_prime_UTR 30.0%
!!! AATTTTGGTTGAAATGGGTT+TGG - chr3_3:22228156-22228175 Msa0446480:intron 30.0%
!! GTAATTTGTTTGACCAAGAT+TGG - chr3_3:22228231-22228250 Msa0446480:intron 30.0%
TCTTCAGTAATGAAATGCAA+TGG - chr3_3:22228289-22228308 Msa0446480:intron 30.0%
! CAATGGTGTTAAATTTCTTG+TGG - chr3_3:22228306-22228325 Msa0446480:intron 30.0%
! ATGGTGTTAAATTTCTTGTG+GGG - chr3_3:22228308-22228327 Msa0446480:intron 30.0%
!! TCATTGGCTAATAGTCATTT+TGG - chr3_3:22228411-22228430 Msa0446480:intron 30.0%
GACTAACAAAGTAAACAATC+AGG + chr3_3:22228498-22228517 None:intergenic 30.0%
! AAGAGTTATTGTGAGTATTG+AGG - chr3_3:22228643-22228662 Msa0446480:intron 30.0%
!! AGAGTTATTGTGAGTATTGA+GGG - chr3_3:22228644-22228663 Msa0446480:intron 30.0%
! AGTTGGGATAATAGTCATTT+TGG + chr3_3:22228764-22228783 None:intergenic 30.0%
GATGATAATTGATTGGATGT+TGG - chr3_3:22228874-22228893 Msa0446480:intron 30.0%
TGATAATTGATTGGATGTTG+GGG - chr3_3:22228876-22228895 Msa0446480:intron 30.0%
!! CAAAGGTATCTTGGTTAAAA+TGG - chr3_3:22229056-22229075 Msa0446480:intron 30.0%
! TAAAATGGGTTTGTTCAATG+TGG - chr3_3:22228956-22228975 Msa0446480:intron 30.0%
! AAAATGGGTTTGTTCAATGT+GGG - chr3_3:22228957-22228976 Msa0446480:intron 30.0%
! TTATTGGCTGAAACTCATAT+GGG + chr3_3:22229138-22229157 None:intergenic 30.0%
ACTTCAATCCAAACATTATC+AGG - chr3_3:22229273-22229292 Msa0446480:CDS 30.0%
! GAATTTCACCTGATAATGTT+TGG + chr3_3:22229284-22229303 None:intergenic 30.0%
TTTCAACTCCTTTATCTATC+TGG - chr3_3:22229427-22229446 Msa0446480:intron 30.0%
TTGCTTATTTAGTCTGTTTG+AGG + chr3_3:22229572-22229591 Msa0446490:intron 30.0%
! ACTATTGTAATTTGTAGGTG+TGG - chr3_3:22229601-22229620 Msa0446480:intron 30.0%
CCTTTAGCAAAAAAAGTTGA+GGG + chr3_3:22229665-22229684 Msa0446490:intron 30.0%
! TCTGATTTTCCCATAGAATT+CGG + chr3_3:22229739-22229758 Msa0446490:intron 30.0%
! ACTGTCTCTTAACTTGAATT+CGG - chr3_3:22229913-22229932 Msa0446480:intron 30.0%
! TTAGCACTGAAGTATTTGAA+TGG - chr3_3:22230079-22230098 Msa0446480:intron 30.0%
!! TGGATTTGCTTATTTCTGTT+AGG - chr3_3:22230099-22230118 Msa0446480:intron 30.0%
!! GGATTTGCTTATTTCTGTTA+GGG - chr3_3:22230100-22230119 Msa0446480:intron 30.0%
!! GATTTGCTTATTTCTGTTAG+GGG - chr3_3:22230101-22230120 Msa0446480:intron 30.0%
!! ATTTGCTTATTTCTGTTAGG+GGG - chr3_3:22230102-22230121 Msa0446480:intron 30.0%
! AAAGGTTCTAGCATCAAAAT+CGG + chr3_3:22230153-22230172 Msa0446490:intron 30.0%
TATTAATGTAACCTTTGCCA+GGG + chr3_3:22230604-22230623 Msa0446490:intron 30.0%
ATATTAATGTAACCTTTGCC+AGG + chr3_3:22230605-22230624 Msa0446490:intron 30.0%
GGAGAATTTAGATTTCAATG+GGG - chr3_3:22230632-22230651 Msa0446480:intron 30.0%
AATTTAGATTTCAATGGGGA+GGG - chr3_3:22230636-22230655 Msa0446480:intron 30.0%
!! AACAGTAAACTTGTTGTCAT+TGG - chr3_3:22230667-22230686 Msa0446480:intron 30.0%
AAGCATTAATGTAGTAGTGA+TGG - chr3_3:22230847-22230866 Msa0446480:intron 30.0%
TATTCTTGATAGACTAAGGT+AGG + chr3_3:22230883-22230902 Msa0446490:CDS 30.0%
AAGCTATTCTTGATAGACTA+AGG + chr3_3:22230887-22230906 Msa0446490:CDS 30.0%
GTCTATCAAGAATAGCTTAA+AGG - chr3_3:22230889-22230908 Msa0446480:intron 30.0%
TGAACAGTTTCACCTTATAA+AGG + chr3_3:22230990-22231009 None:intergenic 30.0%
ATTTCAGTACATGTCATCAA+TGG + chr3_3:22231031-22231050 None:intergenic 30.0%
TATACTGAACAATGCAATGT+AGG - chr3_3:22231053-22231072 Msa0446480:intron 30.0%
GTAGGATTTGTCATATAACT+TGG - chr3_3:22231071-22231090 Msa0446480:intron 30.0%
AGGATTTGTCATATAACTTG+GGG - chr3_3:22231073-22231092 Msa0446480:intron 30.0%
TTTGATGCTCTCAATATTTG+TGG + chr3_3:22231173-22231192 None:intergenic 30.0%
TTGTAACAAATGCAAAACGA+CGG + chr3_3:22231270-22231289 None:intergenic 30.0%
! TCCAGTTGTTAAAGGTTTTT+CGG + chr3_3:22231487-22231506 None:intergenic 30.0%
CAGCCTTAAAAATTTCTTCT+CGG - chr3_3:22231596-22231615 Msa0446480:intron 30.0%
!!! TGTTACTTTTTCATCAGATG+AGG - chr3_3:22231689-22231708 Msa0446480:intron 30.0%
CTTGATATACTTCAAGTACA+TGG - chr3_3:22231793-22231812 Msa0446480:intron 30.0%
TATACAAACATCATCAAGCA+AGG + chr3_3:22231838-22231857 None:intergenic 30.0%
!! CATAATGGGTATGTAATTGA+TGG + chr3_3:22232149-22232168 None:intergenic 30.0%
! TTGTGATTTTGTGATAGATC+TGG + chr3_3:22232173-22232192 None:intergenic 30.0%
TTCAATTTCAGGGATCATTT+AGG + chr3_3:22232217-22232236 None:intergenic 30.0%
AACAAATCTAAACAAAGGGA+CGG + chr3_3:22232255-22232274 None:intergenic 30.0%
AATCTTACAAATACCAATGG+AGG - chr3_3:22232283-22232302 Msa0446480:intron 30.0%
ATCTTACAAATACCAATGGA+GGG - chr3_3:22232284-22232303 Msa0446480:intron 30.0%
! ACTTTAGAAGATTGATCATG+TGG - chr3_3:22232342-22232361 Msa0446480:intron 30.0%
! CTTTAGAAGATTGATCATGT+GGG - chr3_3:22232343-22232362 Msa0446480:intron 30.0%
! ATGAGAACAGCTATTTCATT+AGG + chr3_3:22232470-22232489 None:intergenic 30.0%
AATCAACAAGGAGACAAAAA+GGG + chr3_3:22232493-22232512 None:intergenic 30.0%
AAATCAACAAGGAGACAAAA+AGG + chr3_3:22232494-22232513 None:intergenic 30.0%
AGTTAACATACAGCAAATCA+AGG + chr3_3:22232726-22232745 None:intergenic 30.0%
TAACAACAATAGACACAATG+TGG + chr3_3:22232979-22232998 None:intergenic 30.0%
TTATCTCGTTATCTTGTTGG+TGG + chr3_3:22227696-22227715 None:intergenic 35.0%
AGAAGCCATTGTTTGTAATG+AGG + chr3_3:22227775-22227794 None:intergenic 35.0%
! AAGTGTTGTGAGTTAGAGAA+AGG + chr3_3:22227818-22227837 None:intergenic 35.0%
!!! GGGTTTTAAGGTAAAGTTTG+TGG + chr3_3:22227841-22227860 None:intergenic 35.0%
!!! TGTTGTCGTTTTGGGTTTTA+AGG + chr3_3:22227853-22227872 None:intergenic 35.0%
TCATCATTACTAACAGTACG+AGG + chr3_3:22227987-22228006 None:intergenic 35.0%
ACCATGTTCTTGAACAATCT+TGG + chr3_3:22228015-22228034 None:intergenic 35.0%
ATTTGTTTGACCAAGATTGG+TGG - chr3_3:22228234-22228253 Msa0446480:intron 35.0%
! TGGTGTTAAATTTCTTGTGG+GGG - chr3_3:22228309-22228328 Msa0446480:intron 35.0%
GGCTACTCGATACATATTTA+AGG + chr3_3:22228438-22228457 None:intergenic 35.0%
! TGGACAATCAGAGACTATTT+TGG - chr3_3:22228694-22228713 Msa0446480:intron 35.0%
CTATTGTGACTACCTCTTAT+AGG - chr3_3:22228737-22228756 Msa0446480:intron 35.0%
!! AGTCATTTTGGTCCTATAAG+AGG + chr3_3:22228752-22228771 None:intergenic 35.0%
CTATCACCAACAAAAATCGT+GGG - chr3_3:22228907-22228926 Msa0446480:intron 35.0%
GTGGAATGTTCACCTTAATT+TGG - chr3_3:22228932-22228951 Msa0446480:intron 35.0%
! CTTATTGGCTGAAACTCATA+TGG + chr3_3:22229139-22229158 None:intergenic 35.0%
TGTTATAGAGCCAATGAAAG+AGG - chr3_3:22229167-22229186 Msa0446480:CDS 35.0%
GTTATAGAGCCAATGAAAGA+GGG - chr3_3:22229168-22229187 Msa0446480:CDS 35.0%
TGTAACATTCCCTCTTTCAT+TGG + chr3_3:22229180-22229199 None:intergenic 35.0%
CTCTTTGTAAATGATCACAC+AGG + chr3_3:22229497-22229516 Msa0446490:intron 35.0%
CTGTGTGATCATTTACAAAG+AGG - chr3_3:22229495-22229514 Msa0446480:CDS 35.0%
GTCTTGAATTAGAACCTTAC+AGG - chr3_3:22229533-22229552 Msa0446480:CDS 35.0%
! ATTGTAATTTGTAGGTGTGG+TGG - chr3_3:22229604-22229623 Msa0446480:intron 35.0%
!!! CCCTCAACTTTTTTTGCTAA+AGG - chr3_3:22229662-22229681 Msa0446480:intron 35.0%
GCCTTTAGCAAAAAAAGTTG+AGG + chr3_3:22229666-22229685 Msa0446490:intron 35.0%
TTGCTAAAGGCAGAAAGAAA+TGG - chr3_3:22229675-22229694 Msa0446480:intron 35.0%
TGCTAAAGGCAGAAAGAAAT+GGG - chr3_3:22229676-22229695 Msa0446480:intron 35.0%
ATAATGAGAGAAGCTTGTAG+TGG - chr3_3:22229707-22229726 Msa0446480:intron 35.0%
TAATGAGAGAAGCTTGTAGT+GGG - chr3_3:22229708-22229727 Msa0446480:intron 35.0%
TAAGAGACAGTAAGAGAAAG+AGG + chr3_3:22229904-22229923 Msa0446490:intron 35.0%
! CTGTCTCTTAACTTGAATTC+GGG - chr3_3:22229914-22229933 Msa0446480:intron 35.0%
! TTGAATTCGGGTATTTTCCA+CGG - chr3_3:22229926-22229945 Msa0446480:intron 35.0%
!! GTATTATGCTGCTACTTTCA+TGG - chr3_3:22230285-22230304 Msa0446480:intron 35.0%
ATGTACTTCTTACCAAAGCA+AGG + chr3_3:22230315-22230334 Msa0446490:intron 35.0%
! TTATGGCTGTTTATCCCTTT+TGG - chr3_3:22230355-22230374 Msa0446480:intron 35.0%
GAATTTAGATTTCAATGGGG+AGG - chr3_3:22230635-22230654 Msa0446480:intron 35.0%
TGCCTCTTGTGTAAAAAACA+GGG - chr3_3:22230721-22230740 Msa0446480:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr3_3:22230726-22230745 Msa0446490:intron 35.0%
TATAAGGTGAAACTGTTCAG+TGG - chr3_3:22230991-22231010 Msa0446480:intron 35.0%
ATCTTATGACAGCAAATTGG+AGG - chr3_3:22231438-22231457 Msa0446480:intron 35.0%
TCTTATGACAGCAAATTGGA+GGG - chr3_3:22231439-22231458 Msa0446480:intron 35.0%
ACCGAAAAACCTTTAACAAC+TGG - chr3_3:22231483-22231502 Msa0446480:intron 35.0%
GAAAAACCTTTAACAACTGG+AGG - chr3_3:22231486-22231505 Msa0446480:intron 35.0%
ATTTGTAGACAGTCCTTACA+AGG - chr3_3:22231536-22231555 Msa0446480:intron 35.0%
AGTCCTTACAAGGTATATGT+GGG - chr3_3:22231546-22231565 Msa0446480:intron 35.0%
TTTCCCACATATACCTTGTA+AGG + chr3_3:22231552-22231571 None:intergenic 35.0%
!!! GAAATTTTTAAGGCTGTCAG+AGG + chr3_3:22231592-22231611 None:intergenic 35.0%
TTTCAGCACGCAAAATAAAC+AGG + chr3_3:22231770-22231789 None:intergenic 35.0%
AAACATCATCAAGCAAGGAT+TGG + chr3_3:22231833-22231852 None:intergenic 35.0%
! CTACCATAAACCCTTTTAGT+AGG + chr3_3:22231964-22231983 None:intergenic 35.0%
CAATATTCGCAAAACAGAAC+AGG + chr3_3:22232048-22232067 None:intergenic 35.0%
CCATTTGTGTAACAAACTTG+CGG - chr3_3:22232086-22232105 Msa0446480:intron 35.0%
TGGGTATGTAATTGATGGAA+TGG + chr3_3:22232144-22232163 None:intergenic 35.0%
GTGATAGATCTGGTCATAAT+GGG + chr3_3:22232163-22232182 None:intergenic 35.0%
TGTGATAGATCTGGTCATAA+TGG + chr3_3:22232164-22232183 None:intergenic 35.0%
CACAAATGTGACGTTTATGA+GGG + chr3_3:22232445-22232464 None:intergenic 35.0%
ATTTGGGGACTCTATTCAAT+GGG - chr3_3:22232630-22232649 Msa0446480:intron 35.0%
TGTTAACTGCAGTTGTTAGA+AGG - chr3_3:22232738-22232757 Msa0446480:intron 35.0%
GTTAACTGCAGTTGTTAGAA+GGG - chr3_3:22232739-22232758 Msa0446480:intron 35.0%
!! TTTTCTACGCCTTATTCACT+CGG + chr3_3:22232773-22232792 None:intergenic 35.0%
ACAAGGTCTCAAAATCATTC+TGG + chr3_3:22232891-22232910 None:intergenic 35.0%
GCATCAGTGAATGTTCATAA+GGG + chr3_3:22233054-22233073 None:intergenic 35.0%
TGCATCAGTGAATGTTCATA+AGG + chr3_3:22233055-22233074 None:intergenic 35.0%
! AATTGATGGATGAAAGGCAA+TGG + chr3_3:22233112-22233131 None:intergenic 35.0%
AAGTAAGTAACTGGGAGTAG+TGG + chr3_3:22227736-22227755 None:intergenic 40.0%
!!! GAAGAAGGTGTTGTCGTTTT+GGG + chr3_3:22227861-22227880 None:intergenic 40.0%
ACGTAAAGCTTTCTAACAGC+AGG + chr3_3:22227954-22227973 None:intergenic 40.0%
GCTGTTAGAAAGCTTTACGT+TGG - chr3_3:22227954-22227973 Msa0446480:three_prime_UTR 40.0%
GCCAAGATTGTTCAAGAACA+TGG - chr3_3:22228011-22228030 Msa0446480:exon 40.0%
GAATTCGAATCCAGAACTTC+CGG + chr3_3:22228271-22228290 None:intergenic 40.0%
TCAAACCTAATCTCTCATGC+CGG + chr3_3:22228360-22228379 None:intergenic 40.0%
AATTGATTGGATGTTGGGGT+TGG - chr3_3:22228880-22228899 Msa0446480:intron 40.0%
ATTGATTGGATGTTGGGGTT+GGG - chr3_3:22228881-22228900 Msa0446480:intron 40.0%
!!! CCACGATTTTTGTTGGTGAT+AGG + chr3_3:22228909-22228928 None:intergenic 40.0%
CCTATCACCAACAAAAATCG+TGG - chr3_3:22228906-22228925 Msa0446480:intron 40.0%
TGGGTCTCACAGTTAAGAAA+TGG - chr3_3:22229091-22229110 Msa0446480:CDS 40.0%
GGGTCTCACAGTTAAGAAAT+GGG - chr3_3:22229092-22229111 Msa0446480:CDS 40.0%
! GAAATGGGTTCCACATAAAG+TGG - chr3_3:22229107-22229126 Msa0446480:CDS 40.0%
GCAAAAAAAGTTGAGGGAGA+GGG + chr3_3:22229659-22229678 Msa0446490:intron 40.0%
AGCAAAAAAAGTTGAGGGAG+AGG + chr3_3:22229660-22229679 Msa0446490:intron 40.0%
!! TGGGAAGTACCGAATTCTAT+GGG - chr3_3:22229727-22229746 Msa0446480:intron 40.0%
ACAGTAAGAGAAAGAGGAAG+AGG + chr3_3:22229898-22229917 Msa0446490:intron 40.0%
AATTGAAAGATCTCTCACCG+TGG + chr3_3:22229946-22229965 Msa0446490:intron 40.0%
TTTCATGGAGAACCTTGCTT+TGG - chr3_3:22230300-22230319 Msa0446480:intron 40.0%
TCTTGTCTTGCAGACCAAAA+GGG + chr3_3:22230372-22230391 Msa0446490:intron 40.0%
ATCTTGTCTTGCAGACCAAA+AGG + chr3_3:22230373-22230392 Msa0446490:intron 40.0%
TGGTCTGCAAGACAAGATTA+AGG - chr3_3:22230375-22230394 Msa0446480:intron 40.0%
CCATTAATGTGCGATGCAAA+TGG + chr3_3:22230472-22230491 Msa0446490:intron 40.0%
CCATTTGCATCGCACATTAA+TGG - chr3_3:22230469-22230488 Msa0446480:intron 40.0%
! CTTGTTGTCATTGGACTGAA+AGG - chr3_3:22230676-22230695 Msa0446480:intron 40.0%
CTGCCTCTTGTGTAAAAAAC+AGG - chr3_3:22230720-22230739 Msa0446480:intron 40.0%
ACTTGGGGATATGATTTCAC+AGG - chr3_3:22231088-22231107 Msa0446480:intron 40.0%
CTTGGGGATATGATTTCACA+GGG - chr3_3:22231089-22231108 Msa0446480:intron 40.0%
TTGGGGATATGATTTCACAG+GGG - chr3_3:22231090-22231109 Msa0446480:intron 40.0%
GTAAGGACTGTCTACAAATG+CGG + chr3_3:22231535-22231554 None:intergenic 40.0%
CAGTCCTTACAAGGTATATG+TGG - chr3_3:22231545-22231564 Msa0446480:intron 40.0%
CAAGGTATATGTGGGAAATC+TGG - chr3_3:22231554-22231573 Msa0446480:intron 40.0%
ACCTCAAAATCCAGTGGTTT+CGG - chr3_3:22231663-22231682 Msa0446480:intron 40.0%
GCACGCAAAATAAACAGGAA+GGG + chr3_3:22231765-22231784 None:intergenic 40.0%
AGCACGCAAAATAAACAGGA+AGG + chr3_3:22231766-22231785 None:intergenic 40.0%
TTAGTAGGCCTCCTACTAAA+AGG - chr3_3:22231950-22231969 Msa0446480:intron 40.0%
TAGTAGGCCTCCTACTAAAA+GGG - chr3_3:22231951-22231970 Msa0446480:intron 40.0%
! CCATAAACCCTTTTAGTAGG+AGG + chr3_3:22231961-22231980 None:intergenic 40.0%
CCTCCTACTAAAAGGGTTTA+TGG - chr3_3:22231958-22231977 Msa0446480:intron 40.0%
GTTACACAAATGGTAACTGC+TGG + chr3_3:22232079-22232098 None:intergenic 40.0%
!! CCGCAAGTTTGTTACACAAA+TGG + chr3_3:22232089-22232108 None:intergenic 40.0%
AATCAGATTCATCCCTCCAT+TGG + chr3_3:22232299-22232318 None:intergenic 40.0%
TATGAGGGAACTTGTGATGA+TGG + chr3_3:22232430-22232449 None:intergenic 40.0%
CCACAAATGTGACGTTTATG+AGG + chr3_3:22232446-22232465 None:intergenic 40.0%
CCTCATAAACGTCACATTTG+TGG - chr3_3:22232443-22232462 Msa0446480:intron 40.0%
GATTTGGGGACTCTATTCAA+TGG - chr3_3:22232629-22232648 Msa0446480:intron 40.0%
GCAGAAAATCCGAGTGAATA+AGG - chr3_3:22232761-22232780 Msa0446480:CDS 40.0%
TTTGTCAGCTTAGAGTTCCA+AGG - chr3_3:22232814-22232833 Msa0446480:CDS 40.0%
GTTACTCTCATGAATCTCCT+TGG + chr3_3:22232834-22232853 None:intergenic 40.0%
ATGAACATTCACTGATGCAG+AGG - chr3_3:22233056-22233075 Msa0446480:five_prime_UTR 40.0%
!! CGTTATCTTGTTGGTGGTGT+TGG + chr3_3:22227690-22227709 None:intergenic 45.0%
!!! GGAAGAAGGTGTTGTCGTTT+TGG + chr3_3:22227862-22227881 None:intergenic 45.0%
GGTTTCTTCTGAACAAGCCA+CGG - chr3_3:22227920-22227939 Msa0446480:three_prime_UTR 45.0%
!! TGGTGCTGTTGAAAAAGCTG+AGG - chr3_3:22228031-22228050 Msa0446480:CDS 45.0%
! TTGACCAAGATTGGTGGTTC+CGG - chr3_3:22228240-22228259 Msa0446480:intron 45.0%
! CCACTACCCACGATTTTTGT+TGG + chr3_3:22228916-22228935 None:intergenic 45.0%
CCAACAAAAATCGTGGGTAG+TGG - chr3_3:22228913-22228932 Msa0446480:intron 45.0%
ATGGGTTCGACCACTTTATG+TGG + chr3_3:22229120-22229139 None:intergenic 45.0%
TGCTGTTCTCATTCTCAGAG+TGG - chr3_3:22229305-22229324 Msa0446480:CDS 45.0%
GCTTTCTAATGCAGCCTGTA+AGG + chr3_3:22229550-22229569 Msa0446490:intron 45.0%
!! GTGGGAAGTACCGAATTCTA+TGG - chr3_3:22229726-22229745 Msa0446480:intron 45.0%
! CTTTGGTGAAAAGAGTGTGG+CGG + chr3_3:22229831-22229850 Msa0446490:intron 45.0%
! GCCACACTCTTTTCACCAAA+GGG - chr3_3:22229830-22229849 Msa0446480:intron 45.0%
! CCACACTCTTTTCACCAAAG+GGG - chr3_3:22229831-22229850 Msa0446480:intron 45.0%
! CTCTTTTCACCAAAGGGGTT+TGG - chr3_3:22229836-22229855 Msa0446480:intron 45.0%
ATACCAAAGCCAAACCCCTT+TGG + chr3_3:22229848-22229867 Msa0446490:intron 45.0%
!! TGCTTATTTCTGTTAGGGGG+AGG - chr3_3:22230105-22230124 Msa0446480:intron 45.0%
!! GCTTATTTCTGTTAGGGGGA+GGG - chr3_3:22230106-22230125 Msa0446480:intron 45.0%
AGATTTCAATGGGGAGGGAA+TGG - chr3_3:22230641-22230660 Msa0446480:intron 45.0%
GTCATTGGACTGAAAGGTCA+CGG - chr3_3:22230682-22230701 Msa0446480:intron 45.0%
ACTGCTCACAATGCACCAAA+TGG - chr3_3:22230748-22230767 Msa0446480:intron 45.0%
CTCACAATGCACCAAATGGT+GGG - chr3_3:22230752-22230771 Msa0446480:intron 45.0%
AATTCTGTTAAAGGGCAGCC+CGG + chr3_3:22230817-22230836 Msa0446490:CDS 45.0%
! TGTAGTAGTGATGGTGAGTC+AGG - chr3_3:22230856-22230875 Msa0446480:intron 45.0%
TGCTGCGTTTGCATCTTCAA+CGG + chr3_3:22231299-22231318 None:intergenic 45.0%
GTCTACAAATGCGGATTCCT+CGG + chr3_3:22231526-22231545 None:intergenic 45.0%
AGCAAATGCTCTTAGTGCCA+AGG - chr3_3:22231623-22231642 Msa0446480:intron 45.0%
CTCTTAGTGCCAAGGTTTCA+CGG - chr3_3:22231631-22231650 Msa0446480:intron 45.0%
TCTTAGTGCCAAGGTTTCAC+GGG - chr3_3:22231632-22231651 Msa0446480:intron 45.0%
AGTAACAAAGCCGAAACCAC+TGG + chr3_3:22231676-22231695 None:intergenic 45.0%
ACTGATGCAGAGGCAAAAGT+TGG - chr3_3:22233066-22233085 Msa0446480:five_prime_UTR 45.0%
GTCGTAACGACAAGGGAAGA+AGG + chr3_3:22227876-22227895 None:intergenic 50.0%
ACGACGTGTCGTAACGACAA+GGG + chr3_3:22227883-22227902 None:intergenic 50.0%
AACGACGTGTCGTAACGACA+AGG + chr3_3:22227884-22227903 None:intergenic 50.0%
TTCTTCTGAACAAGCCACGG+TGG - chr3_3:22227923-22227942 Msa0446480:three_prime_UTR 50.0%
CCGGCTAGAAAAACAACGAG+CGG + chr3_3:22228341-22228360 None:intergenic 50.0%
!!! CCGCTCGTTGTTTTTCTAGC+CGG - chr3_3:22228338-22228357 Msa0446480:intron 50.0%
TCTAGCCGGCATGAGAGATT+AGG - chr3_3:22228352-22228371 Msa0446480:intron 50.0%
! CGCCACACTCTTTTCACCAA+AGG - chr3_3:22229829-22229848 Msa0446480:intron 50.0%
CCCCTTTGGTGAAAAGAGTG+TGG + chr3_3:22229834-22229853 Msa0446490:intron 50.0%
! TCACCAAAGGGGTTTGGCTT+TGG - chr3_3:22229842-22229861 Msa0446480:intron 50.0%
!! CAAAAGTGCCATTCGCACCA+CGG - chr3_3:22230402-22230421 Msa0446480:intron 50.0%
AGATATGACCGTGGTGCGAA+TGG + chr3_3:22230413-22230432 Msa0446490:intron 50.0%
ACTGCACAGAGATATGACCG+TGG + chr3_3:22230422-22230441 Msa0446490:intron 50.0%
CTGTGCAGTGAAACAGTAGC+TGG - chr3_3:22230433-22230452 Msa0446480:intron 50.0%
GCATCGCACATTAATGGTGC+TGG - chr3_3:22230475-22230494 Msa0446480:intron 50.0%
! GTTTTGTGGCAGGAAGAGAG+TGG - chr3_3:22230509-22230528 Msa0446480:intron 50.0%
CTTTGCCAGGGAGAGAAAAC+AGG + chr3_3:22230592-22230611 Msa0446490:intron 50.0%
! CTGTTTTCTCTCCCTGGCAA+AGG - chr3_3:22230590-22230609 Msa0446480:intron 50.0%
GCTCACAATGCACCAAATGG+TGG - chr3_3:22230751-22230770 Msa0446480:intron 50.0%
GCAGCAGCTGAGAAACTCAA+TGG - chr3_3:22231313-22231332 Msa0446480:intron 50.0%
GGCGAACCTCCAGTTGTTAA+AGG + chr3_3:22231495-22231514 None:intergenic 50.0%
! GCCGAAACCACTGGATTTTG+AGG + chr3_3:22231667-22231686 None:intergenic 50.0%
AACAGCAGGAGAATCCACCG+TGG + chr3_3:22227940-22227959 None:intergenic 55.0%
TGAGCCGGAACCACCAATCT+TGG + chr3_3:22228247-22228266 None:intergenic 55.0%
! ATTGGTGGTTCCGGCTCAAC+CGG - chr3_3:22228249-22228268 Msa0446480:intron 55.0%
TCCAGAACTTCCGGTTGAGC+CGG + chr3_3:22228262-22228281 None:intergenic 55.0%
CAGTAGCTGGTCGTCAGTTG+AGG - chr3_3:22230446-22230465 Msa0446480:intron 55.0%
!! TAATGGTGCTGGTGCAGCAC+TGG - chr3_3:22230486-22230505 Msa0446480:intron 55.0%
!! AATGGTGCTGGTGCAGCACT+GGG - chr3_3:22230487-22230506 Msa0446480:intron 55.0%
!! TGGTGCAGCACTGGGTTTTG+TGG - chr3_3:22230495-22230514 Msa0446480:intron 55.0%
! CACGTCCTGTTTTCTCTCCC+TGG - chr3_3:22230584-22230603 Msa0446480:intron 55.0%
CCTATGCAGGGTATGGGAAG+GGG + chr3_3:22230779-22230798 Msa0446490:intron 55.0%
GCCTATGCAGGGTATGGGAA+GGG + chr3_3:22230780-22230799 Msa0446490:intron 55.0%
CTTCCCATACCCTGCATAGG+CGG - chr3_3:22230779-22230798 Msa0446480:intron 55.0%
TTCCCATACCCTGCATAGGC+GGG - chr3_3:22230780-22230799 Msa0446480:intron 55.0%
ACAAAGCTCCCGCCTATGCA+GGG + chr3_3:22230791-22230810 Msa0446490:intron 55.0%
CCAAGGTTTCACGGGTTCCT+GGG - chr3_3:22231640-22231659 Msa0446480:intron 55.0%
!!! CCACTGGATTTTGAGGTCCC+AGG + chr3_3:22231660-22231679 None:intergenic 55.0%
CCTGGGACCTCAAAATCCAG+TGG - chr3_3:22231657-22231676 Msa0446480:intron 55.0%
TCCGGCTCAACCGGAAGTTC+TGG - chr3_3:22228258-22228277 Msa0446480:intron 60.0%
!! GCAGCACTGGGTTTTGTGGC+AGG - chr3_3:22230499-22230518 Msa0446480:intron 60.0%
TGGGAAGGGGTCCCACCATT+TGG + chr3_3:22230766-22230785 Msa0446490:intron 60.0%
CCCCTTCCCATACCCTGCAT+AGG - chr3_3:22230776-22230795 Msa0446480:intron 60.0%
CGCCTATGCAGGGTATGGGA+AGG + chr3_3:22230781-22230800 Msa0446490:intron 60.0%
CTCCCGCCTATGCAGGGTAT+GGG + chr3_3:22230785-22230804 Msa0446490:intron 60.0%
CACAAAGCTCCCGCCTATGC+AGG + chr3_3:22230792-22230811 Msa0446490:intron 60.0%
! TAGGCGGGAGCTTTGTGCAC+CGG - chr3_3:22230795-22230814 Msa0446480:intron 60.0%
AACTGGAGGTTCGCCAGTCC+AGG - chr3_3:22231500-22231519 Msa0446480:intron 60.0%
CAAATGCGGATTCCTCGGCC+TGG + chr3_3:22231521-22231540 None:intergenic 60.0%
GCCAAGGTTTCACGGGTTCC+TGG - chr3_3:22231639-22231658 Msa0446480:intron 60.0%
CCCAGGAACCCGTGAAACCT+TGG + chr3_3:22231643-22231662 None:intergenic 60.0%
GCTCCCGCCTATGCAGGGTA+TGG + chr3_3:22230786-22230805 Msa0446490:intron 65.0%
! AGGCGGGAGCTTTGTGCACC+GGG - chr3_3:22230796-22230815 Msa0446480:intron 65.0%
AGGTTCGCCAGTCCAGGCCG+AGG - chr3_3:22231506-22231525 Msa0446480:intron 70.0%
GCGGATTCCTCGGCCTGGAC+TGG + chr3_3:22231516-22231535 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 22227673 22233136 22227673 ID=Msa0446480;Name=Msa0446480
chr3_3 mRNA 22227673 22233136 22227673 ID=Msa0446480-mRNA-1;Parent=Msa0446480;Name=Msa0446480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=113|1|1|1|0.66|1|4|348|234
chr3_3 exon 22227673 22228059 22227673 ID=Msa0446480-mRNA-1:exon:4604;Parent=Msa0446480-mRNA-1
chr3_3 exon 22229063 22229359 22229063 ID=Msa0446480-mRNA-1:exon:4603;Parent=Msa0446480-mRNA-1
chr3_3 exon 22229470 22229571 22229470 ID=Msa0446480-mRNA-1:exon:4602;Parent=Msa0446480-mRNA-1
chr3_3 exon 22232757 22233136 22232757 ID=Msa0446480-mRNA-1:exon:4601;Parent=Msa0446480-mRNA-1
chr3_3 five_prime_UTR 22233024 22233136 22233024 ID=Msa0446480-mRNA-1:five_prime_utr;Parent=Msa0446480-mRNA-1
chr3_3 CDS 22232757 22233023 22232757 ID=Msa0446480-mRNA-1:cds;Parent=Msa0446480-mRNA-1
chr3_3 CDS 22229470 22229571 22229470 ID=Msa0446480-mRNA-1:cds;Parent=Msa0446480-mRNA-1
chr3_3 CDS 22229063 22229359 22229063 ID=Msa0446480-mRNA-1:cds;Parent=Msa0446480-mRNA-1
chr3_3 CDS 22228021 22228059 22228021 ID=Msa0446480-mRNA-1:cds;Parent=Msa0446480-mRNA-1
chr3_3 three_prime_UTR 22227673 22228020 22227673 ID=Msa0446480-mRNA-1:three_prime_utr;Parent=Msa0446480-mRNA-1
Gene Sequence

>Msa0446480

ATGGCTTCTTTACTTTCACAACTCAATTTCCTTTCTCTAACTCACAACACTTCCACAAACTTTACCTTAAAACCCAAAACGACAACACCTTCTTCCCTTGTCGTTACGACACGTCGTTTTAGAAAACACTTTGTGGTTTCTTCTGAACAAGCCACGGTGGATTCTCCTGCTGTTAGAAAGCTTTACGTTGGTAACATTCCTCGTACTGTTAGTAATGATGAACTTGCCAAGATTGTTCAAGAACATGGTGCTGTTGAAAAAGCTGAGGTTATGTATGATAAATACTCTAAAAGGAGCCGTCGTTTTGCATTTGTTACAATGAAAACCGTTGAAGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACTGGAGGTTCGCCAGTCCAGGCCGAGGAATCCGCATTTGTAGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACCTCTGACAGCCTTAAAAATTTCTTCTCGGAAAAAGCAAATGCTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGTGGTTTCGGCTTTGTTACTTTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTTTGTTAGAAGGGCAGAAAATCCGAGTGAATAAGGCGTAG
Protein sequence

>Msa0446480

MASLLSQLNFLSLTHNTSTNFTLKPKTTTPSSLVVTTRRFRKHFVVSSEQATVDSPAVRKLYVGNIPRTVSNDELAKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGSPVQAEESAFVDSPYKVYVGNLAKNVTSDSLKNFFSEKANALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA*