AlfalfaGEDB | Msa1292560

M. sativa cultivar zhongmu-4 / Msa1292560

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700
PFAM: PF00857.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292560	XP_003628897.2	96.721	244	8	0	1	244	1	244	7.61e-174	488

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292560	sp\|Q8S8F9\|NIC1_ARATH	64.378	233	82	1	13	244	11	243	1.99e-115	333

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292560	G7LIK7	96.721	244	8	0	1	244	1	244	3.63e-174	488

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002700	Msa1292560	-0.803990	2.677170e-49	-8.615850e-47
Msa0004180	Msa1292560	-0.800080	1.704629e-48	-8.615850e-47
Msa0021240	Msa1292560	-0.812539	4.029603e-51	-8.615850e-47
Msa0021570	Msa1292560	-0.800695	1.277440e-48	-8.615850e-47
Msa0024070	Msa1292560	-0.819683	1.021023e-52	-8.615850e-47
Msa0028410	Msa1292560	-0.801452	8.945089e-49	-8.615850e-47
Msa0028450	Msa1292560	-0.801356	9.358179e-49	-8.615850e-47
Msa0030710	Msa1292560	-0.819701	1.011538e-52	-8.615850e-47
Msa0034590	Msa1292560	-0.836436	9.368809e-57	-8.615850e-47
Msa0047400	Msa1292560	-0.806581	7.673668e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292560	MtrunA17_Chr8g0367511	96.721	244	8	0	1	244	1	244	7.00e-178	488
Msa1292560	MtrunA17_Chr4g0049831	60.084	238	95	0	7	244	27	264	1.25e-113	327

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292560	AT2G22570.1	64.378	233	82	1	13	244	11	243	2.02e-116	333
Msa1292560	AT2G22570.2	63.265	147	53	1	13	158	11	157	1.11e-68	209

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Find 68 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACGTAATTATTATAA+GGG	0.460495	8_3:-48891922	None:intergenic
AAATGAAGATCTCCTCTGGC+TGG	0.479902	8_3:+48893323	Msa1292560:intron
AACCATTAACAAGATCAACG+AGG	0.806684	8_3:-48892093	None:intergenic
AACTCCAAACCAAAACAACA+TGG	0.595457	8_3:+48891970	Msa1292560:exon
AAGAATAATTACGAAGTTGC+CGG	0.420829	8_3:-48892131	None:intergenic
AAGCAGACATCGTTAAGTGT+TGG	0.570890	8_3:+48895336	Msa1292560:exon
AAGGTATCTGATAGAAGAAG+AGG	0.530007	8_3:-48892055	None:intergenic
AATGAAATGAAGATCTCCTC+TGG	0.533168	8_3:+48893319	Msa1292560:intron
ACTCCAAACCAAAACAACAT+GGG	0.686000	8_3:+48891971	Msa1292560:exon
ACTTTACATAGCCGTGGGAA+GGG	0.552368	8_3:+48895279	Msa1292560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATAATTACGAAGTTGC+CGG	-	chr8_3:48892134-48892153	None:intergenic	30.0%
AGATAACAGAGTAAGTTAAG+AGG	-	chr8_3:48892178-48892197	None:intergenic	30.0%
CATGACAATGAAAAAGACAA+AGG	-	chr8_3:48892203-48892222	None:intergenic	30.0%
CGATGAGAAAATTAGTAAGA+TGG	+	chr8_3:48892283-48892302	Msa1292560:CDS	30.0%
TGAGAAAATTAGTAAGATGG+TGG	+	chr8_3:48892286-48892305	Msa1292560:CDS	30.0%
ATAGTACCAACTTCCTAATA+AGG	+	chr8_3:48892919-48892938	Msa1292560:intron	30.0%
ATTTGATGAGGGGATTTAAA+GGG	-	chr8_3:48892950-48892969	None:intergenic	30.0%
TATTTGATGAGGGGATTTAA+AGG	-	chr8_3:48892951-48892970	None:intergenic	30.0%
TTAAATCCCCTCATCAAATA+TGG	+	chr8_3:48892951-48892970	Msa1292560:intron	30.0%
AGAGTTTCCATATTTGATGA+GGG	-	chr8_3:48892961-48892980	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	48891893	48895623	48891893	ID=Msa1292560;Name=Msa1292560
chr8_3	mRNA	48891893	48895623	48891893	ID=Msa1292560-mRNA-1;Parent=Msa1292560;Name=Msa1292560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=96\|1\|1\|1\|1\|1\|5\|287\|244
chr8_3	exon	48891893	48892141	48891893	ID=Msa1292560-mRNA-1:exon:13576;Parent=Msa1292560-mRNA-1
chr8_3	exon	48892269	48892452	48892269	ID=Msa1292560-mRNA-1:exon:13577;Parent=Msa1292560-mRNA-1
chr8_3	exon	48893331	48893464	48893331	ID=Msa1292560-mRNA-1:exon:13578;Parent=Msa1292560-mRNA-1
chr8_3	exon	48894058	48894243	48894058	ID=Msa1292560-mRNA-1:exon:13579;Parent=Msa1292560-mRNA-1
chr8_3	exon	48895259	48895623	48895259	ID=Msa1292560-mRNA-1:exon:13580;Parent=Msa1292560-mRNA-1
chr8_3	five_prime_UTR	48891893	48891988	48891893	ID=Msa1292560-mRNA-1:five_prime_utr;Parent=Msa1292560-mRNA-1
chr8_3	CDS	48891989	48892141	48891989	ID=Msa1292560-mRNA-1:cds;Parent=Msa1292560-mRNA-1
chr8_3	CDS	48892269	48892452	48892269	ID=Msa1292560-mRNA-1:cds;Parent=Msa1292560-mRNA-1
chr8_3	CDS	48893331	48893464	48893331	ID=Msa1292560-mRNA-1:cds;Parent=Msa1292560-mRNA-1
chr8_3	CDS	48894058	48894243	48894058	ID=Msa1292560-mRNA-1:cds;Parent=Msa1292560-mRNA-1
chr8_3	CDS	48895259	48895336	48895259	ID=Msa1292560-mRNA-1:cds;Parent=Msa1292560-mRNA-1
chr8_3	three_prime_UTR	48895337	48895623	48895337	ID=Msa1292560-mRNA-1:three_prime_utr;Parent=Msa1292560-mRNA-1

Gene Sequence

>Msa1292560

ATGGGCTCTGAATCTCAATCTCCGACGGTGGAGCTTGTAAAGGAAGAAATCCCAGTAAAACAACAACCTCTTCTTCTATCAGATACCTTCAAAACTGGTCTTGTCCTCGTTGATCTTGTTAATGGTTTCTGCACCGTTGGATCCGGCAACTTCGCGCCAAAAGAACACGATGAGAAAATTAGTAAGATGGTGGAAGAATCAGTGAAGCTATCAAAAAAATTTGCTGAGAAAAATTGGCCAATATTTGCTTATCTTGATTCTCATCATCCTGATATTCCTGAACCTCCTTATCCTCCTCATTGTCTTATTGGATCCGATGAAAGCAAATTAGTTCCTGATCTCCTCTGGCTGGAAAATGATCCAAATGCAACACTCAGGAGCAAAGACTGCATTGATGGATTCATTGGTTCGTATGAGAAAGATGGCTCTAATGTGTTTATTGATTGGGTGAAAAGTAATCAGATAAAACAAGTTTTGGTTTGTGGGATATGCACTGATATCTGCGTGCTGGATTTTACCTGTTCAGTTTTGTCTGCGAGAAATCGCGGTTTCCTTTCTCCTCTGGAAAATGTGATTGTGGCCTCCCATGCTTGTGCTACTTATGATCTTCCACTACATGTAGCCAAAGCTAGCAAAGATCTGGTGTCACATCCACAGGAGTTAATGCATCATGTTGCACTTTACATAGCCGTGGGAAGGGGAGCCCAGATAGCATCAAAGGTGTCATTTGAATAA

Protein sequence

>Msa1292560

MGSESQSPTVELVKEEIPVKQQPLLLSDTFKTGLVLVDLVNGFCTVGSGNFAPKEHDEKISKMVEESVKLSKKFAEKNWPIFAYLDSHHPDIPEPPYPPHCLIGSDESKLVPDLLWLENDPNATLRSKDCIDGFIGSYEKDGSNVFIDWVKSNQIKQVLVCGICTDICVLDFTCSVLSARNRGFLSPLENVIVASHACATYDLPLHVAKASKDLVSHPQELMHHVALYIAVGRGAQIASKVSFE*