AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181740 MtrunA17_Chr1g0202661 89.968 309 18 2 1 309 1 296 0.0 523
Msa0181740 MtrunA17_Chr6g0468841 72.468 316 77 4 1 309 1 313 3.05e-156 439
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181740 AT4G25700.1 66.559 311 86 5 1 306 1 298 2.94e-144 409
Msa0181740 AT5G52570.1 67.722 316 74 8 1 307 1 297 1.18e-135 387
Msa0181740 AT4G25700.2 59.211 228 75 5 1 223 1 215 9.18e-85 254
Msa0181740 AT4G25700.3 59.211 228 75 5 1 223 1 215 9.18e-85 254
Msa0181740 AT5G52570.2 40.064 312 98 11 1 307 1 228 6.91e-44 150

Find 113 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGATTGTAGGGCTTTA+AGG 0.141087 1_4:+69978829 None:intergenic
TTTAGGTAGGTATGGAATAT+TGG 0.214997 1_4:-69978097 Msa0181740:intron
TTCATCTGGTTAGTGTGTTT+TGG 0.236695 1_4:+69978662 None:intergenic
CTCTCCTTTCACCCATTCAT+TGG 0.248086 1_4:-69978964 Msa0181740:five_prime_UTR
GGTCTTGGAATTACGGTGTT+TGG 0.277671 1_4:-69977507 Msa0181740:CDS
GCAATTGCTCTTCTCTCATA+TGG 0.287011 1_4:-69977727 Msa0181740:CDS
CACACTAACCAGATGAAAAC+TGG 0.295803 1_4:-69978656 Msa0181740:CDS
TTCTTGTTCTTTGGGTTTGA+AGG 0.312771 1_4:+69978723 None:intergenic
TAGCTTTGGTGTTACCTCTA+TGG 0.317708 1_4:-69978522 Msa0181740:CDS
TGAGGGCTGGGTTTACTGTT+AGG 0.327820 1_4:+69978617 None:intergenic
TTAGGTAGGTATGGAATATT+GGG 0.328698 1_4:-69978096 Msa0181740:intron
CTTCACCGTTTGTGTTCTAA+TGG 0.335091 1_4:-69978690 Msa0181740:CDS
GTCTTGGAATTACGGTGTTT+GGG 0.363241 1_4:-69977506 Msa0181740:CDS
GATGGGCTCATGAGGTTCTA+TGG 0.363709 1_4:-69978070 Msa0181740:CDS
GCTATGACGGAAACCTCTTA+AGG 0.364201 1_4:+69978751 None:intergenic
TGACTAGGGTCTTGGAATTA+CGG 0.376865 1_4:-69977514 Msa0181740:intron
TGAGGGTTGGAGGAGATTGT+AGG 0.377556 1_4:+69978820 None:intergenic
TTGGTGCCTGGTCTCTGCTT+TGG 0.387095 1_4:-69977688 Msa0181740:CDS
GGGAAGAAGTTGAGGGTTGG+AGG 0.387923 1_4:+69978810 None:intergenic
GTATGGAATATTGGGCTAGA+TGG 0.394991 1_4:-69978088 Msa0181740:CDS
GTTCCTTGGTCTGAAATGTT+TGG 0.410492 1_4:-69978229 Msa0181740:CDS
GGGGAAGGGGAAGAAGTTGA+GGG 0.413157 1_4:+69978803 None:intergenic
TCATCTTATGACTAGGGTCT+TGG 0.416939 1_4:-69977522 Msa0181740:intron
CTATGACGGAAACCTCTTAA+GGG 0.426369 1_4:+69978752 None:intergenic
TTTAACAAGGGATTGGTGCC+TGG 0.432109 1_4:-69977700 Msa0181740:CDS
GAGGGATGAGTGGGAAATGA+AGG 0.432487 1_4:+69978920 None:intergenic
AGGGGAAGGGGAAGAAGTTG+AGG 0.434588 1_4:+69978802 None:intergenic
GGCACATTTGCCCTCTCAGT+TGG 0.435097 1_4:-69978208 Msa0181740:CDS
GAGAGAAGGGATTGGATGGA+TGG 0.435764 1_4:+69978982 None:intergenic
CATGTTTGTCCATGATGGAT+TGG 0.437840 1_4:-69977475 Msa0181740:CDS
TTATAGATTCTCATGGCAAA+TGG 0.438735 1_4:-69978483 Msa0181740:CDS
AAAACATCATTAAGCTCAAA+TGG 0.441795 1_4:+69977772 None:intergenic
CCCCTTTGAATTTGTCCGAA+TGG 0.445592 1_4:+69977215 None:intergenic
GAGGGTTGGAGGAGATTGTA+GGG 0.445723 1_4:+69978821 None:intergenic
GGGCTTTAAGGTTGTGGCGG+TGG 0.448289 1_4:+69978841 None:intergenic
GCCTACATGTTTGTCCATGA+TGG 0.451700 1_4:-69977480 Msa0181740:CDS
AGCTCAAATGGTCCCTCTCT+TGG 0.457561 1_4:+69977784 None:intergenic
AGGGTAGTGGAGAGGTTCCT+TGG 0.458584 1_4:-69978243 Msa0181740:CDS
TAGTGTTGTTAGAGAGAGAG+AGG 0.461803 1_4:+69978901 None:intergenic
TTGTTTGCAGCTCCACCATT+CGG 0.466820 1_4:-69977230 Msa0181740:intron
GACAGAGACAAGCCAATGAA+TGG 0.467951 1_4:+69978952 None:intergenic
AGCTAGAGAAAGAGATAAGT+AGG 0.469767 1_4:-69976742 Msa0181740:CDS
TCAGCCGCCATGGAGAATAA+AGG 0.471323 1_4:+69978869 None:intergenic
AACAGCTAAGATTGCCATAG+AGG 0.474363 1_4:+69978508 None:intergenic
AAATTCAAAGGGGTGCCATA+TGG 0.476176 1_4:-69977205 Msa0181740:CDS
ACCATTCGGACAAATTCAAA+GGG 0.476981 1_4:-69977216 Msa0181740:CDS
GCAGCTGTAATGTCTAGCTT+TGG 0.479617 1_4:-69978536 Msa0181740:CDS
AGGAGAACAAGATCATATAC+TGG 0.482339 1_4:-69976722 Msa0181740:CDS
TATGAGAGAAGAGCAATTGC+AGG 0.484302 1_4:+69977730 None:intergenic
GAAGTAGGGCACGTTGGCAA+TGG 0.491586 1_4:+69977428 None:intergenic
ATCGTAACCTTTATTCTCCA+TGG 0.493629 1_4:-69978876 Msa0181740:exon
AGACCTCATGCATGTGCCAC+AGG 0.495599 1_4:+69978039 None:intergenic
ACGTTGGCAATGGGACCCAC+AGG 0.500337 1_4:+69977438 None:intergenic
AGCAGCAACTCTTGTGAAGT+AGG 0.501312 1_4:+69977413 None:intergenic
ATTGTAGGGCTTTAAGGTTG+TGG 0.501902 1_4:+69978835 None:intergenic
GGTGAAAGGAGAGAAGGGAT+TGG 0.504657 1_4:+69978974 None:intergenic
GAATGGGTGAAAGGAGAGAA+GGG 0.508769 1_4:+69978969 None:intergenic
AAGGGGAAGAAGTTGAGGGT+TGG 0.509214 1_4:+69978807 None:intergenic
TTAGTAATAAATAATACAGC+AGG 0.511514 1_4:-69976590 Msa0181740:three_prime_UTR
AAAGGAGAGAAGGGATTGGA+TGG 0.511715 1_4:+69978978 None:intergenic
TATGGAATATTGGGCTAGAT+GGG 0.511988 1_4:-69978087 Msa0181740:CDS
AAGTAGGGCACGTTGGCAAT+GGG 0.513920 1_4:+69977429 None:intergenic
ATCTTCCATTAGAACACAAA+CGG 0.516336 1_4:+69978685 None:intergenic
CACCATTCGGACAAATTCAA+AGG 0.517507 1_4:-69977217 Msa0181740:CDS
AGTGTTGTTAGAGAGAGAGA+GGG 0.521837 1_4:+69978902 None:intergenic
CTTTGAATTTGTCCGAATGG+TGG 0.523450 1_4:+69977218 None:intergenic
ATGAAAGGAAATTGAGGAGG+TGG 0.523479 1_4:+69979065 None:intergenic
GTGCAGGAAGTTGAAGAAGT+GGG 0.525266 1_4:-69976776 Msa0181740:intron
ACAGAGACAAGCCAATGAAT+GGG 0.528436 1_4:+69978953 None:intergenic
CTGTTTATTATAGATTCTCA+TGG 0.538973 1_4:-69978490 Msa0181740:CDS
AAAGAAATGAAAGGAAATTG+AGG 0.539095 1_4:+69979059 None:intergenic
GGTGCAGGAAGTTGAAGAAG+TGG 0.541999 1_4:-69976777 Msa0181740:intron
GGGCTGGGTTTACTGTTAGG+AGG 0.546115 1_4:+69978620 None:intergenic
TGAGGAGGTGGTGTTGTGGT+CGG 0.554664 1_4:+69979077 None:intergenic
CAAGCCAATGAATGGGTGAA+AGG 0.555081 1_4:+69978960 None:intergenic
TCTTATGAACCAATCCATCA+TGG 0.562531 1_4:+69977466 None:intergenic
GATGAGTGGGAAATGAAGGT+TGG 0.564852 1_4:+69978924 None:intergenic
TTCCCTGTGGCACATGCATG+AGG 0.571758 1_4:-69978042 Msa0181740:intron
TGAATGGGTGAAAGGAGAGA+AGG 0.571800 1_4:+69978968 None:intergenic
GGTGGAAAGTTCAGCCGCCA+TGG 0.584774 1_4:+69978859 None:intergenic
GCAGCAACTCTTGTGAAGTA+GGG 0.586414 1_4:+69977414 None:intergenic
CAGGAAGTTGAAGAAGTGGG+AGG 0.586564 1_4:-69976773 Msa0181740:CDS
TAGACATTACAGCTGCAACT+AGG 0.594222 1_4:+69978543 None:intergenic
AGGAAGTTGAAGAAGTGGGA+GGG 0.595124 1_4:-69976772 Msa0181740:CDS
ACACTAACCAGATGAAAACT+GGG 0.600198 1_4:-69978655 Msa0181740:CDS
AACGCAACATCACAAAATTG+TGG 0.602925 1_4:-69979012 Msa0181740:five_prime_UTR
GTCACATCATCGACCAAGAG+AGG 0.605840 1_4:-69977797 Msa0181740:CDS
TTGGGCTAGATGGGCTCATG+AGG 0.606671 1_4:-69978078 Msa0181740:CDS
TATGACGGAAACCTCTTAAG+GGG 0.609525 1_4:+69978753 None:intergenic
TTGTTTGTATGATAGGGTAG+TGG 0.616386 1_4:-69978256 Msa0181740:intron
TACAGCAGCACCAACTGAGA+GGG 0.619847 1_4:+69978198 None:intergenic
TTCTATGGCATGCTTCCCTG+TGG 0.625607 1_4:-69978055 Msa0181740:CDS
ATATATACAAAAGAAATGAA+AGG 0.627298 1_4:+69979050 None:intergenic
GACCTCATGCATGTGCCACA+GGG 0.632725 1_4:+69978040 None:intergenic
AGAGCAATTCGATTAATGCA+TGG 0.641419 1_4:-69976647 Msa0181740:three_prime_UTR
TGTATGATAGGGTAGTGGAG+AGG 0.645728 1_4:-69978251 Msa0181740:intron
AAATTGAGGAGGTGGTGTTG+TGG 0.646197 1_4:+69979073 None:intergenic
TAGATTCTCATGGCAAATGG+AGG 0.648620 1_4:-69978480 Msa0181740:intron
ACTGCACCAAAGCAGAGACC+AGG 0.649131 1_4:+69977682 None:intergenic
TCCATCATGGACAAACATGT+AGG 0.652573 1_4:+69977479 None:intergenic
GTAGGGCTTTAAGGTTGTGG+CGG 0.654013 1_4:+69978838 None:intergenic
TCACATCATCGACCAAGAGA+GGG 0.657623 1_4:-69977796 Msa0181740:CDS
GAAATGAAAGGAAATTGAGG+AGG 0.658110 1_4:+69979062 None:intergenic
GTGCCAAACATTTCAGACCA+AGG 0.665898 1_4:+69978226 None:intergenic
GTAACCTTTATTCTCCATGG+CGG 0.666735 1_4:-69978873 Msa0181740:exon
TTACAGCAGCACCAACTGAG+AGG 0.672349 1_4:+69978197 None:intergenic
TCTTGTGAAGTAGGGCACGT+TGG 0.672979 1_4:+69977422 None:intergenic
CGTTGGCAATGGGACCCACA+GGG 0.676768 1_4:+69977439 None:intergenic
GGTTCATAAGAGATTCCCTG+TGG 0.688013 1_4:-69977454 Msa0181740:CDS
ATGACGGAAACCTCTTAAGG+GGG 0.694254 1_4:+69978754 None:intergenic
GTTCATAAGAGATTCCCTGT+GGG 0.700599 1_4:-69977453 Msa0181740:CDS
CACTAACCAGATGAAAACTG+GGG 0.723473 1_4:-69978654 Msa0181740:CDS
CCATTCGGACAAATTCAAAG+GGG 0.749285 1_4:-69977215 Msa0181740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATACAAAAGAAATGAA+AGG + chr1_4:69976549-69976568 None:intergenic 15.0%
!!! AAAATGAAATTGGTTAATTT+TGG - chr1_4:69977453-69977472 Msa0181740:CDS 15.0%
!!! AATTCAACATTGATTTTTTT+AGG - chr1_4:69977482-69977501 Msa0181740:CDS 15.0%
!!! ATTTTTATTTTTTGTGCAAA+TGG - chr1_4:69978313-69978332 Msa0181740:intron 15.0%
!!! TTTTTATTTTTTGTGCAAAT+GGG - chr1_4:69978314-69978333 Msa0181740:intron 15.0%
!!! ATTTTTAGTTGCACAAAAAT+TGG - chr1_4:69977002-69977021 Msa0181740:intron 20.0%
!! TCATCAATTGAAAATGAAAT+TGG - chr1_4:69977443-69977462 Msa0181740:CDS 20.0%
!!! TCATATGGTTTTTTTAACAA+GGG - chr1_4:69977884-69977903 Msa0181740:intron 20.0%
!! TTAGTAAATCCCTTAATTAA+CGG - chr1_4:69977966-69977985 Msa0181740:intron 20.0%
!! TAAACAAAAGAAAATATGAG+TGG - chr1_4:69978271-69978290 Msa0181740:intron 20.0%
!! TTAGTAATAAATAATACAGC+AGG - chr1_4:69979006-69979025 Msa0181740:five_prime_UTR 20.0%
! AAAGAAATGAAAGGAAATTG+AGG + chr1_4:69976540-69976559 None:intergenic 25.0%
!!! TGTTGATTTTCTTGTTCTTT+GGG + chr1_4:69976884-69976903 None:intergenic 25.0%
! TTTGTGCAACTAAAAATTGA+GGG + chr1_4:69976999-69977018 None:intergenic 25.0%
!! TTTTGTGCAACTAAAAATTG+AGG + chr1_4:69977000-69977019 None:intergenic 25.0%
! CTGTTTATTATAGATTCTCA+TGG - chr1_4:69977106-69977125 Msa0181740:intron 25.0%
!!! ATCGTTTTTTGAATGATGTT+TGG - chr1_4:69977316-69977335 Msa0181740:intron 25.0%
!!! CAACATTGATTTTTTTAGGT+AGG - chr1_4:69977486-69977505 Msa0181740:CDS 25.0%
!!! TTGATTTTTTTAGGTAGGTA+TGG - chr1_4:69977491-69977510 Msa0181740:CDS 25.0%
! TGAAAGAAAAGAGAGAAAAT+GGG + chr1_4:69977606-69977625 None:intergenic 25.0%
! ATGTGAATAAACAAATGCAT+TGG - chr1_4:69977655-69977674 Msa0181740:intron 25.0%
! AAAACATCATTAAGCTCAAA+TGG + chr1_4:69977827-69977846 None:intergenic 25.0%
!!! CTCATATGGTTTTTTTAACA+AGG - chr1_4:69977883-69977902 Msa0181740:intron 25.0%
! TCATTTCAGAGAATAAATCA+GGG + chr1_4:69978049-69978068 None:intergenic 25.0%
! TCAAGCAATTCTTAATTACT+TGG + chr1_4:69978214-69978233 None:intergenic 25.0%
! CAAAAAAAAAACCAAGAAGA+GGG + chr1_4:69978454-69978473 None:intergenic 25.0%
! ACAAAAAAAAAACCAAGAAG+AGG + chr1_4:69978455-69978474 None:intergenic 25.0%
! GATTATTCATCAATTAAGTG+TGG - chr1_4:69978545-69978564 Msa0181740:CDS 25.0%
!!! GTTTAAAAGAATTTTGAGTG+TGG - chr1_4:69978926-69978945 Msa0181740:five_prime_UTR 25.0%
!!! ACAGCATGTTATTTTAATAC+AGG - chr1_4:69979049-69979068 Msa0181740:five_prime_UTR 25.0%
!! TTTGAAGGATTTTGCTATGA+CGG + chr1_4:69976861-69976880 None:intergenic 30.0%
!!! GTGTTGATTTTCTTGTTCTT+TGG + chr1_4:69976885-69976904 None:intergenic 30.0%
ATCTTCCATTAGAACACAAA+CGG + chr1_4:69976914-69976933 None:intergenic 30.0%
TTATAGATTCTCATGGCAAA+TGG - chr1_4:69977113-69977132 Msa0181740:intron 30.0%
! ATTTGACACCGTAATTTTGT+AGG - chr1_4:69977190-69977209 Msa0181740:CDS 30.0%
TTTCAGCTCCTACAAAATTA+CGG + chr1_4:69977201-69977220 None:intergenic 30.0%
! TAAGTGCATGTTTGAAATGA+CGG + chr1_4:69977281-69977300 None:intergenic 30.0%
!! TTTGGCTTGTTTGTATGATA+GGG - chr1_4:69977334-69977353 Msa0181740:intron 30.0%
TTTAGGTAGGTATGGAATAT+TGG - chr1_4:69977499-69977518 Msa0181740:CDS 30.0%
TTAGGTAGGTATGGAATATT+GGG - chr1_4:69977500-69977519 Msa0181740:CDS 30.0%
GTGAAAGAAAAGAGAGAAAA+TGG + chr1_4:69977607-69977626 None:intergenic 30.0%
! GCAAAATATTCAAGTTAGCA+TGG + chr1_4:69977734-69977753 None:intergenic 30.0%
GATTCAATGCTATTGGTATA+AGG + chr1_4:69977756-69977775 None:intergenic 30.0%
CATCTTTGATTCAATGCTAT+TGG + chr1_4:69977763-69977782 None:intergenic 30.0%
!!! TGGTTTTTTTAACAAGGGAT+TGG - chr1_4:69977889-69977908 Msa0181740:intron 30.0%
CCAATGAAACCGTTAATTAA+GGG + chr1_4:69977978-69977997 None:intergenic 30.0%
CCTTAATTAACGGTTTCATT+GGG - chr1_4:69977976-69977995 Msa0181740:intron 30.0%
GTCATTTCAGAGAATAAATC+AGG + chr1_4:69978050-69978069 None:intergenic 30.0%
CAAACAAACAACAAAACCAA+AGG + chr1_4:69978353-69978372 None:intergenic 30.0%
! CAAATTTGGATGCATTTTGT+GGG - chr1_4:69978766-69978785 Msa0181740:CDS 30.0%
GAAATGAAAGGAAATTGAGG+AGG + chr1_4:69976537-69976556 None:intergenic 35.0%
AACGCAACATCACAAAATTG+TGG - chr1_4:69976584-69976603 Msa0181740:three_prime_UTR 35.0%
ATCGTAACCTTTATTCTCCA+TGG - chr1_4:69976720-69976739 Msa0181740:CDS 35.0%
! TTCTTGTTCTTTGGGTTTGA+AGG + chr1_4:69976876-69976895 None:intergenic 35.0%
! TTCATCTGGTTAGTGTGTTT+TGG + chr1_4:69976937-69976956 None:intergenic 35.0%
ACACTAACCAGATGAAAACT+GGG - chr1_4:69976941-69976960 Msa0181740:intron 35.0%
!! GTTTGGCTTGTTTGTATGAT+AGG - chr1_4:69977333-69977352 Msa0181740:intron 35.0%
TTGTTTGTATGATAGGGTAG+TGG - chr1_4:69977340-69977359 Msa0181740:intron 35.0%
! TATGGAATATTGGGCTAGAT+GGG - chr1_4:69977509-69977528 Msa0181740:CDS 35.0%
CCCTTAATTAACGGTTTCAT+TGG - chr1_4:69977975-69977994 Msa0181740:intron 35.0%
CCCAATGAAACCGTTAATTA+AGG + chr1_4:69977979-69977998 None:intergenic 35.0%
ACATCCTCATCTTATGACTA+GGG - chr1_4:69978068-69978087 Msa0181740:CDS 35.0%
TCTTATGAACCAATCCATCA+TGG + chr1_4:69978133-69978152 None:intergenic 35.0%
TGTGCAAATGGGATCTAATT+TGG - chr1_4:69978325-69978344 Msa0181740:intron 35.0%
ACCATTCGGACAAATTCAAA+GGG - chr1_4:69978380-69978399 Msa0181740:intron 35.0%
AAGAAGAGGGAATATGAATG+TGG + chr1_4:69978441-69978460 None:intergenic 35.0%
ACATTCATATTCCCTCTTCT+TGG - chr1_4:69978440-69978459 Msa0181740:intron 35.0%
TGTGGAGAAAAGAGAAAAAC+TGG - chr1_4:69978563-69978582 Msa0181740:CDS 35.0%
GCTAGTTGAGTAGTACTTAT+GGG - chr1_4:69978645-69978664 Msa0181740:CDS 35.0%
CTAGTTGAGTAGTACTTATG+GGG - chr1_4:69978646-69978665 Msa0181740:CDS 35.0%
CCACAAAATGCATCCAAATT+TGG + chr1_4:69978768-69978787 None:intergenic 35.0%
! CCAAATTTGGATGCATTTTG+TGG - chr1_4:69978765-69978784 Msa0181740:CDS 35.0%
AGCTAGAGAAAGAGATAAGT+AGG - chr1_4:69978854-69978873 Msa0181740:CDS 35.0%
AGGAGAACAAGATCATATAC+TGG - chr1_4:69978874-69978893 Msa0181740:exon 35.0%
!! CTTTTAAACAGCTCTAGTAC+TGG + chr1_4:69978915-69978934 None:intergenic 35.0%
AGAGCAATTCGATTAATGCA+TGG - chr1_4:69978949-69978968 Msa0181740:five_prime_UTR 35.0%
ATGAAAGGAAATTGAGGAGG+TGG + chr1_4:69976534-69976553 None:intergenic 40.0%
ACAGAGACAAGCCAATGAAT+GGG + chr1_4:69976646-69976665 None:intergenic 40.0%
! AGTGTTGTTAGAGAGAGAGA+GGG + chr1_4:69976697-69976716 None:intergenic 40.0%
! TAGTGTTGTTAGAGAGAGAG+AGG + chr1_4:69976698-69976717 None:intergenic 40.0%
GTAACCTTTATTCTCCATGG+CGG - chr1_4:69976723-69976742 Msa0181740:CDS 40.0%
!! ATTGTAGGGCTTTAAGGTTG+TGG + chr1_4:69976764-69976783 None:intergenic 40.0%
!! ACAGTGTTGGGGTTGTTTTA+GGG + chr1_4:69976816-69976835 None:intergenic 40.0%
!! AACAGTGTTGGGGTTGTTTT+AGG + chr1_4:69976817-69976836 None:intergenic 40.0%
! TATGACGGAAACCTCTTAAG+GGG + chr1_4:69976846-69976865 None:intergenic 40.0%
! CTATGACGGAAACCTCTTAA+GGG + chr1_4:69976847-69976866 None:intergenic 40.0%
CTTCACCGTTTGTGTTCTAA+TGG - chr1_4:69976906-69976925 Msa0181740:intron 40.0%
CACACTAACCAGATGAAAAC+TGG - chr1_4:69976940-69976959 Msa0181740:intron 40.0%
CACTAACCAGATGAAAACTG+GGG - chr1_4:69976942-69976961 Msa0181740:intron 40.0%
! TTTCTTCCCCAGTTTTCATC+TGG + chr1_4:69976951-69976970 None:intergenic 40.0%
GCAACTAAAAATTGAGGGCT+GGG + chr1_4:69976994-69977013 None:intergenic 40.0%
TGCAACTAAAAATTGAGGGC+TGG + chr1_4:69976995-69977014 None:intergenic 40.0%
TAGACATTACAGCTGCAACT+AGG + chr1_4:69977056-69977075 None:intergenic 40.0%
!! TAGCTTTGGTGTTACCTCTA+TGG - chr1_4:69977074-69977093 Msa0181740:intron 40.0%
AACAGCTAAGATTGCCATAG+AGG + chr1_4:69977091-69977110 None:intergenic 40.0%
TAGATTCTCATGGCAAATGG+AGG - chr1_4:69977116-69977135 Msa0181740:intron 40.0%
ACTCTGATACACACGTGATT+CGG - chr1_4:69977246-69977265 Msa0181740:intron 40.0%
! GTTCCTTGGTCTGAAATGTT+TGG - chr1_4:69977367-69977386 Msa0181740:intron 40.0%
! GTATGGAATATTGGGCTAGA+TGG - chr1_4:69977508-69977527 Msa0181740:CDS 40.0%
AAGAGAGAAAATGGGAAGAC+TGG + chr1_4:69977598-69977617 None:intergenic 40.0%
TATGAGAGAAGAGCAATTGC+AGG + chr1_4:69977869-69977888 None:intergenic 40.0%
GCAATTGCTCTTCTCTCATA+TGG - chr1_4:69977869-69977888 Msa0181740:intron 40.0%
GACATCCTCATCTTATGACT+AGG - chr1_4:69978067-69978086 Msa0181740:CDS 40.0%
AAGACCCTAGTCATAAGATG+AGG + chr1_4:69978075-69978094 None:intergenic 40.0%
TCATCTTATGACTAGGGTCT+TGG - chr1_4:69978074-69978093 Msa0181740:CDS 40.0%
TGACTAGGGTCTTGGAATTA+CGG - chr1_4:69978082-69978101 Msa0181740:CDS 40.0%
GTCTTGGAATTACGGTGTTT+GGG - chr1_4:69978090-69978109 Msa0181740:CDS 40.0%
TCCATCATGGACAAACATGT+AGG + chr1_4:69978120-69978139 None:intergenic 40.0%
!! CATGTTTGTCCATGATGGAT+TGG - chr1_4:69978121-69978140 Msa0181740:intron 40.0%
GTTCATAAGAGATTCCCTGT+GGG - chr1_4:69978143-69978162 Msa0181740:intron 40.0%
CTTTGAATTTGTCCGAATGG+TGG + chr1_4:69978381-69978400 None:intergenic 40.0%
CACCATTCGGACAAATTCAA+AGG - chr1_4:69978379-69978398 Msa0181740:intron 40.0%
CCATTCGGACAAATTCAAAG+GGG - chr1_4:69978381-69978400 Msa0181740:intron 40.0%
!! AAATTCAAAGGGGTGCCATA+TGG - chr1_4:69978391-69978410 Msa0181740:intron 40.0%
! GTGCCATATGGACTCTTTTT+AGG - chr1_4:69978403-69978422 Msa0181740:intron 40.0%
GGTCCTAAAAAGAGTCCATA+TGG + chr1_4:69978409-69978428 None:intergenic 40.0%
!!! TGGACTCTTTTTAGGACCAA+AGG - chr1_4:69978411-69978430 Msa0181740:intron 40.0%
ATATGAATGTGGCTGACCTT+TGG + chr1_4:69978430-69978449 None:intergenic 40.0%
CGCTAGTTGAGTAGTACTTA+TGG - chr1_4:69978644-69978663 Msa0181740:CDS 40.0%
GGTGCTAATAACACATTGCT+TGG - chr1_4:69978787-69978806 Msa0181740:CDS 40.0%
! AAATTGAGGAGGTGGTGTTG+TGG + chr1_4:69976526-69976545 None:intergenic 45.0%
AAAGGAGAGAAGGGATTGGA+TGG + chr1_4:69976621-69976640 None:intergenic 45.0%
GAATGGGTGAAAGGAGAGAA+GGG + chr1_4:69976630-69976649 None:intergenic 45.0%
TGAATGGGTGAAAGGAGAGA+AGG + chr1_4:69976631-69976650 None:intergenic 45.0%
CTCTCCTTTCACCCATTCAT+TGG - chr1_4:69976632-69976651 Msa0181740:three_prime_UTR 45.0%
CAAGCCAATGAATGGGTGAA+AGG + chr1_4:69976639-69976658 None:intergenic 45.0%
GACAGAGACAAGCCAATGAA+TGG + chr1_4:69976647-69976666 None:intergenic 45.0%
GATGAGTGGGAAATGAAGGT+TGG + chr1_4:69976675-69976694 None:intergenic 45.0%
GAGGAGATTGTAGGGCTTTA+AGG + chr1_4:69976770-69976789 None:intergenic 45.0%
!!! TTGGGGTTGTTTTAGGGGAA+GGG + chr1_4:69976810-69976829 None:intergenic 45.0%
!!! CAGTGTTGGGGTTGTTTTAG+GGG + chr1_4:69976815-69976834 None:intergenic 45.0%
! ATGACGGAAACCTCTTAAGG+GGG + chr1_4:69976845-69976864 None:intergenic 45.0%
! GCTATGACGGAAACCTCTTA+AGG + chr1_4:69976848-69976867 None:intergenic 45.0%
! GCAGCTGTAATGTCTAGCTT+TGG - chr1_4:69977060-69977079 Msa0181740:intron 45.0%
!! TGTATGATAGGGTAGTGGAG+AGG - chr1_4:69977345-69977364 Msa0181740:intron 45.0%
GTGCCAAACATTTCAGACCA+AGG + chr1_4:69977373-69977392 None:intergenic 45.0%
TCACATCATCGACCAAGAGA+GGG - chr1_4:69977800-69977819 Msa0181740:intron 45.0%
! TTTAACAAGGGATTGGTGCC+TGG - chr1_4:69977896-69977915 Msa0181740:intron 45.0%
GGTCTTGGAATTACGGTGTT+TGG - chr1_4:69978089-69978108 Msa0181740:CDS 45.0%
GCCTACATGTTTGTCCATGA+TGG - chr1_4:69978116-69978135 Msa0181740:intron 45.0%
GGTTCATAAGAGATTCCCTG+TGG - chr1_4:69978142-69978161 Msa0181740:intron 45.0%
GCAGCAACTCTTGTGAAGTA+GGG + chr1_4:69978185-69978204 None:intergenic 45.0%
AGCAGCAACTCTTGTGAAGT+AGG + chr1_4:69978186-69978205 None:intergenic 45.0%
!! GGGATCTAATTTGGTGCCTT+TGG - chr1_4:69978334-69978353 Msa0181740:intron 45.0%
TTGTTTGCAGCTCCACCATT+CGG - chr1_4:69978366-69978385 Msa0181740:intron 45.0%
CCCCTTTGAATTTGTCCGAA+TGG + chr1_4:69978384-69978403 None:intergenic 45.0%
AGTGTGCTCGTAGCCAAATT+TGG - chr1_4:69978752-69978771 Msa0181740:CDS 45.0%
CACATTGCTTGGCTGACATA+TGG - chr1_4:69978798-69978817 Msa0181740:CDS 45.0%
GTGCAGGAAGTTGAAGAAGT+GGG - chr1_4:69978820-69978839 Msa0181740:CDS 45.0%
AGGAAGTTGAAGAAGTGGGA+GGG - chr1_4:69978824-69978843 Msa0181740:CDS 45.0%
GAGAGAAGGGATTGGATGGA+TGG + chr1_4:69976617-69976636 None:intergenic 50.0%
GGTGAAAGGAGAGAAGGGAT+TGG + chr1_4:69976625-69976644 None:intergenic 50.0%
GAGGGATGAGTGGGAAATGA+AGG + chr1_4:69976679-69976698 None:intergenic 50.0%
AGAGAGAGAGAGGGATGAGT+GGG + chr1_4:69976688-69976707 None:intergenic 50.0%
TAGAGAGAGAGAGGGATGAG+TGG + chr1_4:69976689-69976708 None:intergenic 50.0%
TCAGCCGCCATGGAGAATAA+AGG + chr1_4:69976730-69976749 None:intergenic 50.0%
!! GTAGGGCTTTAAGGTTGTGG+CGG + chr1_4:69976761-69976780 None:intergenic 50.0%
GAGGGTTGGAGGAGATTGTA+GGG + chr1_4:69976778-69976797 None:intergenic 50.0%
TGAGGGTTGGAGGAGATTGT+AGG + chr1_4:69976779-69976798 None:intergenic 50.0%
AAGGGGAAGAAGTTGAGGGT+TGG + chr1_4:69976792-69976811 None:intergenic 50.0%
!!! TGGGGTTGTTTTAGGGGAAG+GGG + chr1_4:69976809-69976828 None:intergenic 50.0%
!!! GTTGGGGTTGTTTTAGGGGA+AGG + chr1_4:69976811-69976830 None:intergenic 50.0%
AGGGGGTGAAGAACAGTGTT+GGG + chr1_4:69976828-69976847 None:intergenic 50.0%
AAGGGGGTGAAGAACAGTGT+TGG + chr1_4:69976829-69976848 None:intergenic 50.0%
CTGTTCTTCACCCCCTTAAG+AGG - chr1_4:69976832-69976851 Msa0181740:intron 50.0%
TGAGGGCTGGGTTTACTGTT+AGG + chr1_4:69976982-69977001 None:intergenic 50.0%
TACAGCAGCACCAACTGAGA+GGG + chr1_4:69977401-69977420 None:intergenic 50.0%
TTACAGCAGCACCAACTGAG+AGG + chr1_4:69977402-69977421 None:intergenic 50.0%
! GATGGGCTCATGAGGTTCTA+TGG - chr1_4:69977526-69977545 Msa0181740:intron 50.0%
TTCTATGGCATGCTTCCCTG+TGG - chr1_4:69977541-69977560 Msa0181740:intron 50.0%
TGGGAAGACTGGCGAAGAAT+CGG + chr1_4:69977587-69977606 None:intergenic 50.0%
GTCACATCATCGACCAAGAG+AGG - chr1_4:69977799-69977818 Msa0181740:CDS 50.0%
AGCTCAAATGGTCCCTCTCT+TGG + chr1_4:69977815-69977834 None:intergenic 50.0%
AAGTAGGGCACGTTGGCAAT+GGG + chr1_4:69978170-69978189 None:intergenic 50.0%
TCTTGTGAAGTAGGGCACGT+TGG + chr1_4:69978177-69978196 None:intergenic 50.0%
GGTGCAGGAAGTTGAAGAAG+TGG - chr1_4:69978819-69978838 Msa0181740:CDS 50.0%
CAGGAAGTTGAAGAAGTGGG+AGG - chr1_4:69978823-69978842 Msa0181740:CDS 50.0%
!! TGAGGAGGTGGTGTTGTGGT+CGG + chr1_4:69976522-69976541 None:intergenic 55.0%
GGGAAGAAGTTGAGGGTTGG+AGG + chr1_4:69976789-69976808 None:intergenic 55.0%
GGGGAAGGGGAAGAAGTTGA+GGG + chr1_4:69976796-69976815 None:intergenic 55.0%
AGGGGAAGGGGAAGAAGTTG+AGG + chr1_4:69976797-69976816 None:intergenic 55.0%
GGGGGTGAAGAACAGTGTTG+GGG + chr1_4:69976827-69976846 None:intergenic 55.0%
GGGCTGGGTTTACTGTTAGG+AGG + chr1_4:69976979-69976998 None:intergenic 55.0%
!! AGGGTAGTGGAGAGGTTCCT+TGG - chr1_4:69977353-69977372 Msa0181740:intron 55.0%
GGCACATTTGCCCTCTCAGT+TGG - chr1_4:69977388-69977407 Msa0181740:intron 55.0%
! TTGGGCTAGATGGGCTCATG+AGG - chr1_4:69977518-69977537 Msa0181740:intron 55.0%
TTCCCTGTGGCACATGCATG+AGG - chr1_4:69977554-69977573 Msa0181740:intron 55.0%
GACCTCATGCATGTGCCACA+GGG + chr1_4:69977559-69977578 None:intergenic 55.0%
AGACCTCATGCATGTGCCAC+AGG + chr1_4:69977560-69977579 None:intergenic 55.0%
! TTGGTGCCTGGTCTCTGCTT+TGG - chr1_4:69977908-69977927 Msa0181740:intron 55.0%
ACTGCACCAAAGCAGAGACC+AGG + chr1_4:69977917-69977936 None:intergenic 55.0%
GAAGTAGGGCACGTTGGCAA+TGG + chr1_4:69978171-69978190 None:intergenic 55.0%
GCTTGGCTGACATATGGTGC+AGG - chr1_4:69978804-69978823 Msa0181740:CDS 55.0%
GGTGGAAAGTTCAGCCGCCA+TGG + chr1_4:69976740-69976759 None:intergenic 60.0%
!! GGGCTTTAAGGTTGTGGCGG+TGG + chr1_4:69976758-69976777 None:intergenic 60.0%
CGTTGGCAATGGGACCCACA+GGG + chr1_4:69978160-69978179 None:intergenic 60.0%
ACGTTGGCAATGGGACCCAC+AGG + chr1_4:69978161-69978180 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69976513 69979105 69976513 ID=Msa0181740;Name=Msa0181740
chr1_4 mRNA 69976513 69979105 69976513 ID=Msa0181740-mRNA-1;Parent=Msa0181740;Name=Msa0181740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=226|1|1|1|1|1|7|202|309
chr1_4 exon 69976513 69976792 69976513 ID=Msa0181740-mRNA-1:exon:23321;Parent=Msa0181740-mRNA-1
chr1_4 exon 69977186 69977242 69977186 ID=Msa0181740-mRNA-1:exon:23320;Parent=Msa0181740-mRNA-1
chr1_4 exon 69977404 69977529 69977404 ID=Msa0181740-mRNA-1:exon:23319;Parent=Msa0181740-mRNA-1
chr1_4 exon 69977684 69977818 69977684 ID=Msa0181740-mRNA-1:exon:23318;Parent=Msa0181740-mRNA-1
chr1_4 exon 69978043 69978114 69978043 ID=Msa0181740-mRNA-1:exon:23317;Parent=Msa0181740-mRNA-1
chr1_4 exon 69978201 69978263 69978201 ID=Msa0181740-mRNA-1:exon:23316;Parent=Msa0181740-mRNA-1
chr1_4 exon 69978481 69979105 69978481 ID=Msa0181740-mRNA-1:exon:23315;Parent=Msa0181740-mRNA-1
chr1_4 five_prime_UTR 69978880 69979105 69978880 ID=Msa0181740-mRNA-1:five_prime_utr;Parent=Msa0181740-mRNA-1
chr1_4 CDS 69978481 69978879 69978481 ID=Msa0181740-mRNA-1:cds;Parent=Msa0181740-mRNA-1
chr1_4 CDS 69978201 69978263 69978201 ID=Msa0181740-mRNA-1:cds;Parent=Msa0181740-mRNA-1
chr1_4 CDS 69978043 69978114 69978043 ID=Msa0181740-mRNA-1:cds;Parent=Msa0181740-mRNA-1
chr1_4 CDS 69977684 69977818 69977684 ID=Msa0181740-mRNA-1:cds;Parent=Msa0181740-mRNA-1
chr1_4 CDS 69977404 69977529 69977404 ID=Msa0181740-mRNA-1:cds;Parent=Msa0181740-mRNA-1
chr1_4 CDS 69977186 69977242 69977186 ID=Msa0181740-mRNA-1:cds;Parent=Msa0181740-mRNA-1
chr1_4 CDS 69976715 69976792 69976715 ID=Msa0181740-mRNA-1:cds;Parent=Msa0181740-mRNA-1
chr1_4 three_prime_UTR 69976513 69976714 69976513 ID=Msa0181740-mRNA-1:three_prime_utr;Parent=Msa0181740-mRNA-1
Gene Sequence

>Msa0181740

ATGGCGGCTGAACTTTCCACCGCCACAACCTTAAAGCCCTACAATCTCCTCCAACCCTCAACTTCTTCCCCTTCCCCTAAAACAACCCCAACACTGTTCTTCACCCCCTTAAGAGGTTTCCGTCATAGCAAAATCCTTCAAACCCAAAGAACAAGAAAATCAACACGCTTCACCGTTTGTGTTCTAATGGAAGATCCAAAACACACTAACCAGATGAAAACTGGGGAAGAAATAGAACCTCCTAACAGTAAACCCAGCCCTCAATTTTTAGTTGCACAAAAATTGGCGAGAAAGAAGTCTCAAAGATTCACTTACCTAGTTGCAGCTGTAATGTCTAGCTTTGGTGTTACCTCTATGGCAATCTTAGCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTAGTGGAGAGGTTCCTTGGTCTGAAATGTTTGGCACATTTGCCCTCTCAGTTGGTGCTGCTGTAGGTATGGAATATTGGGCTAGATGGGCTCATGAGGTTCTATGGCATGCTTCCCTGTGGCACATGCATGAGTCACATCATCGACCAAGAGAGGGACCATTTGAGCTTAATGATGTTTTTGCTATAATCAACGCTGTTCCTGCAATTGCTCTTCTCTCATATGGTTTTTTTAACAAGGGATTGGTGCCTGGTCTCTGCTTTGGTGCAGGTCTTGGAATTACGGTGTTTGGGATTGCCTACATGTTTGTCCATGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCACAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAAAGGGGTGCCATATGGACTCTTTTTAGGACCAAAGGAAGTTGAAGAAGTGGGAGGGATAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAACAAGATCATATACTGGCTCATGA

Protein sequence

>Msa0181740

MAAELSTATTLKPYNLLQPSTSSPSPKTTPTLFFTPLRGFRHSKILQTQRTRKSTRFTVCVLMEDPKHTNQMKTGEEIEPPNSKPSPQFLVAQKLARKKSQRFTYLVAAVMSSFGVTSMAILAVYYRFSWQMEGSGEVPWSEMFGTFALSVGAAVGMEYWARWAHEVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFTRVAAAHQLHHSDKFKGVPYGLFLGPKEVEEVGGIEELEKEISRRTRSYTGS*