AlfalfaGEDB | Msa0504740

M. sativa cultivar zhongmu-4 / Msa0504740

KEGG: K13126
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504740	XP_003599052.1	93.644	236	13	2	1	235	1	235	6.24e-154	437

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504740	sp\|Q8VYM4\|PSRP2_ARATH	68.812	202	57	4	40	235	52	253	1.78e-91	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504740	G7J1T1	93.644	236	13	2	1	235	1	235	2.98e-154	437

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0504740	0.854955	8.718601e-62	-8.615850e-47
Msa0001420	Msa0504740	0.843536	1.319056e-58	-8.615850e-47
Msa0001510	Msa0504740	0.804813	1.804092e-49	-8.615850e-47
Msa0001540	Msa0504740	0.881521	2.239341e-70	-8.615850e-47
Msa0002060	Msa0504740	0.877863	4.465462e-69	-8.615850e-47
Msa0003470	Msa0504740	0.841946	3.490431e-58	-8.615850e-47
Msa0007450	Msa0504740	0.801829	7.485856e-49	-8.615850e-47
Msa0007930	Msa0504740	0.862263	5.734275e-64	-8.615850e-47
Msa0009210	Msa0504740	0.866819	2.156531e-65	-8.615850e-47
Msa0009890	Msa0504740	0.809106	2.229162e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504740	MtrunA17_Chr3g0087481	93.644	236	13	2	1	235	1	235	5.74e-158	437
Msa0504740	MtrunA17_Chr1g0177101	42.614	176	101	0	60	235	108	283	5.65e-45	152
Msa0504740	MtrunA17_Chr7g0267571	40.526	190	109	1	50	235	99	288	5.01e-43	147
Msa0504740	MtrunA17_Chr1g0181111	35.521	259	132	6	1	235	25	272	7.48e-36	128
Msa0504740	MtrunA17_Chr3g0116631	40.212	189	109	2	48	235	97	282	2.17e-34	124
Msa0504740	MtrunA17_Chr3g0116631	39.241	79	48	0	59	137	205	283	6.24e-13	66.6
Msa0504740	MtrunA17_Chr1g0168601	35.052	194	112	2	48	235	44	229	6.87e-34	121
Msa0504740	MtrunA17_Chr4g0058151	38.286	175	103	2	61	235	123	292	1.01e-30	115
Msa0504740	MtrunA17_Chr4g0058151	44.872	78	43	0	61	138	217	294	1.15e-16	77.4
Msa0504740	MtrunA17_Chr4g0070231	29.381	194	111	3	62	233	133	322	2.62e-17	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504740	AT3G52150.2	68.812	202	57	4	40	235	52	253	1.81e-92	272
Msa0504740	AT3G52150.1	68.812	202	57	4	40	235	52	253	1.81e-92	272
Msa0504740	AT3G52380.1	41.885	191	103	2	51	235	107	295	3.10e-45	154
Msa0504740	AT1G60000.1	36.614	254	134	5	1	235	8	253	9.65e-39	135
Msa0504740	AT2G37220.1	36.548	197	95	2	61	235	92	280	9.02e-35	125
Msa0504740	AT5G50250.1	38.122	181	107	2	55	235	108	283	1.83e-34	125
Msa0504740	AT5G50250.1	41.026	78	46	0	61	138	208	285	1.11e-13	69.3
Msa0504740	AT4G24770.1	38.830	188	109	3	49	235	138	320	3.37e-31	117
Msa0504740	AT4G24770.1	46.341	82	43	1	57	138	242	322	3.47e-17	79.3
Msa0504740	AT4G24770.2	38.830	188	109	3	49	235	138	320	3.37e-31	117

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Find 64 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATCTTATTATCTTGT+TGG	0.293456	3_4:+49725508	None:intergenic
AACAGGAGGTTTGCCAGTCC+AGG	0.484987	3_4:-49721254	Msa0504740:CDS
AACGACGTGTCGTAACGGCA+AGG	0.612904	3_4:+49725282	None:intergenic
AAGTGTTGTGAGTTAGAGAA+AGG	0.537007	3_4:+49725351	None:intergenic
AATTATGTAACTGGAAATGG+TGG	0.621073	3_4:+49725436	None:intergenic
AATTGATGGATGAAAGGCAA+TGG	0.605109	3_4:+49719803	None:intergenic
ACAAGGTCTCAAAATCATTC+TGG	0.344549	3_4:+49720026	None:intergenic
ACCGTGTTCTTGAACAATCT+TGG	0.390869	3_4:+49725151	None:intergenic
ACCTCAAAATCCAGTGGTTT+CGG	0.344689	3_4:-49721091	Msa0504740:CDS
ACGACGTGTCGTAACGGCAA+GGG	0.574637	3_4:+49725283	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATGTAACTGGAAATGG+TGG	+	chr3_4:49719887-49719906	None:intergenic	30.0%
TGTGGATGAAATTATGTAAC+TGG	+	chr3_4:49719896-49719915	None:intergenic	30.0%
CCAAACTCAATTCAAAACAA+TGG	-	chr3_4:49719921-49719940	Msa0504740:three_prime_UTR	30.0%
TGAGTTAGAGAAAGGAAATT+GGG	+	chr3_4:49719964-49719983	None:intergenic	30.0%
GGAACACATTTCTTAATTGT+GGG	+	chr3_4:49721133-49721152	None:intergenic	30.0%
TGGAACACATTTCTTAATTG+TGG	+	chr3_4:49721134-49721153	None:intergenic	30.0%
CTTATTAGCTGAAACTCATA+TGG	+	chr3_4:49721173-49721192	None:intergenic	30.0%
TTCAAAAAAACACAAGTCGT+TGG	-	chr3_4:49721368-49721387	Msa0504740:intron	30.0%
TCAAAAAAACACAAGTCGTT+GGG	-	chr3_4:49721369-49721388	Msa0504740:intron	30.0%
CGTTTAAAGAAAACTTGGTT+TGG	-	chr3_4:49721725-49721744	Msa0504740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	49719798	49725544	49719798	ID=Msa0504740;Name=Msa0504740
chr3_4	mRNA	49719798	49725544	49719798	ID=Msa0504740-mRNA-1;Parent=Msa0504740;Name=Msa0504740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=115\|1\|1\|1\|0.75\|0.6\|5\|350\|235
chr3_4	exon	49719798	49720186	49719798	ID=Msa0504740-mRNA-1:exon:10713;Parent=Msa0504740-mRNA-1
chr3_4	exon	49721030	49721326	49721030	ID=Msa0504740-mRNA-1:exon:10712;Parent=Msa0504740-mRNA-1
chr3_4	exon	49721437	49721538	49721437	ID=Msa0504740-mRNA-1:exon:10711;Parent=Msa0504740-mRNA-1
chr3_4	exon	49725133	49725487	49725133	ID=Msa0504740-mRNA-1:exon:10710;Parent=Msa0504740-mRNA-1
chr3_4	exon	49725515	49725544	49725515	ID=Msa0504740-mRNA-1:exon:10709;Parent=Msa0504740-mRNA-1
chr3_4	five_prime_UTR	49725515	49725544	49725515	ID=Msa0504740-mRNA-1:five_prime_utr;Parent=Msa0504740-mRNA-1
chr3_4	five_prime_UTR	49725403	49725487	49725403	ID=Msa0504740-mRNA-1:five_prime_utr;Parent=Msa0504740-mRNA-1
chr3_4	CDS	49725133	49725402	49725133	ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4	CDS	49721437	49721538	49721437	ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4	CDS	49721030	49721326	49721030	ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4	CDS	49720148	49720186	49720148	ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4	three_prime_UTR	49719798	49720147	49719798	ID=Msa0504740-mRNA-1:three_prime_utr;Parent=Msa0504740-mRNA-1

Gene Sequence

>Msa0504740

ATGGCTTCTCTACTCTCACACCCCAATTTCCTTTCTCTAACTCACAACACTTACACAAACTTTACCTTAAAACCCAAAACGACAACAACACCTTCTTCCCTTGCCGTTACGACACGTCGTTTTAGAAAACACTTTGTTGTTTCTTCTGAACAAGCTACGGTGGATTCTCCTGCTGTTAGAAAACTCTACGTTGGTAACATTCCTCGTACTGTTAGTAATGACGAACTTGCCAAGATTGTTCAAGAACACGGTGCTGTTGAAAAAGCTGAGGTTATGTATGACAAATACTCTAAAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACAGGAGGTTTGCCAGTCCAGGCCGAGGAATCCGCATTTGTAGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATAGCCTTAAAAATTTCTTCTCGGAAAAAGCAAATGCTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGTGGTTTCGGCTTTGTTACTTTTTCATCAGACGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTTTGTTAGAAGGGCAGAAAATCCGAGTGAATAAGGCGTAG

Protein sequence

>Msa0504740

MASLLSHPNFLSLTHNTYTNFTLKPKTTTTPSSLAVTTRRFRKHFVVSSEQATVDSPAVRKLYVGNIPRTVSNDELAKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGLPVQAEESAFVDSPYKVYVGNLAKNVTSDSLKNFFSEKANALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA*