AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504740 MtrunA17_Chr3g0087481 93.644 236 13 2 1 235 1 235 5.74e-158 437
Msa0504740 MtrunA17_Chr1g0177101 42.614 176 101 0 60 235 108 283 5.65e-45 152
Msa0504740 MtrunA17_Chr7g0267571 40.526 190 109 1 50 235 99 288 5.01e-43 147
Msa0504740 MtrunA17_Chr1g0181111 35.521 259 132 6 1 235 25 272 7.48e-36 128
Msa0504740 MtrunA17_Chr3g0116631 40.212 189 109 2 48 235 97 282 2.17e-34 124
Msa0504740 MtrunA17_Chr3g0116631 39.241 79 48 0 59 137 205 283 6.24e-13 66.6
Msa0504740 MtrunA17_Chr1g0168601 35.052 194 112 2 48 235 44 229 6.87e-34 121
Msa0504740 MtrunA17_Chr4g0058151 38.286 175 103 2 61 235 123 292 1.01e-30 115
Msa0504740 MtrunA17_Chr4g0058151 44.872 78 43 0 61 138 217 294 1.15e-16 77.4
Msa0504740 MtrunA17_Chr4g0070231 29.381 194 111 3 62 233 133 322 2.62e-17 80.1
Msa0504740 MtrunA17_Chr4g0070231 31.492 181 110 4 55 235 41 207 6.88e-17 79.0
Msa0504740 MtrunA17_Chr1g0179701 26.087 230 157 3 5 234 8 224 1.16e-15 75.5
Msa0504740 MtrunA17_Chr1g0179701 30.303 198 124 6 45 235 225 415 9.09e-15 73.2
Msa0504740 MtrunA17_Chr8g0344491 29.834 181 113 4 55 235 57 223 2.08e-15 74.7
Msa0504740 MtrunA17_Chr8g0344491 28.218 202 118 5 55 233 142 339 3.43e-13 68.2
Msa0504740 MtrunA17_Chr4g0044541 28.070 171 111 2 62 232 36 194 3.17e-15 74.3
Msa0504740 MtrunA17_Chr4g0044541 31.414 191 122 5 51 235 204 391 5.83e-14 70.9
Msa0504740 MtrunA17_Chr3g0120721 25.000 184 121 3 55 235 13 182 5.01e-15 73.2
Msa0504740 MtrunA17_Chr6g0466451 28.079 203 121 5 41 229 86 277 6.16e-15 73.6
Msa0504740 MtrunA17_Chr6g0465631 28.079 203 121 5 41 229 86 277 6.58e-15 73.6
Msa0504740 MtrunA17_Chr3g0139111 28.649 185 110 3 55 235 55 221 7.38e-15 73.2
Msa0504740 MtrunA17_Chr3g0139111 25.258 194 118 3 62 232 147 336 2.48e-12 65.9
Msa0504740 MtrunA17_Chr6g0449481 25.258 194 120 4 49 235 34 209 1.02e-14 72.4
Msa0504740 MtrunA17_Chr3g0110211 27.586 174 113 2 63 235 28 189 3.83e-14 70.9
Msa0504740 MtrunA17_Chr1g0153181 29.500 200 130 6 41 232 191 387 8.87e-14 70.1
Msa0504740 MtrunA17_Chr1g0153181 24.561 171 117 2 62 232 34 192 3.00e-12 65.5
Msa0504740 MtrunA17_Chr0c09g0493511 30.808 198 113 9 44 229 105 290 2.05e-13 68.9
Msa0504740 MtrunA17_Chr5g0411091 31.429 175 113 5 60 232 96 265 4.18e-13 67.4
Msa0504740 MtrunA17_Chr7g0265341 30.556 180 116 4 62 235 251 427 4.26e-13 68.2
Msa0504740 MtrunA17_Chr7g0265341 27.746 173 113 3 62 234 72 232 3.79e-12 65.5
Msa0504740 MtrunA17_Chr7g0265341 27.624 181 116 5 58 235 156 324 3.54e-11 62.4
Msa0504740 MtrunA17_Chr1g0201151 30.102 196 112 5 45 225 193 378 5.19e-13 67.8
Msa0504740 MtrunA17_Chr1g0201151 24.272 206 128 3 27 232 13 190 8.85e-11 61.2
Msa0504740 MtrunA17_Chr3g0132451 25.455 220 148 6 22 232 44 256 7.23e-13 66.6
Msa0504740 MtrunA17_Chr6g0466501 26.744 172 112 4 62 232 27 185 9.68e-13 67.0
Msa0504740 MtrunA17_Chr3g0134141 24.561 171 117 2 62 232 26 184 4.69e-12 65.1
Msa0504740 MtrunA17_Chr3g0134141 31.868 182 111 6 62 235 205 381 1.22e-11 63.9
Msa0504740 MtrunA17_Chr3g0134141 29.032 186 114 6 57 235 104 278 9.42e-11 61.2
Msa0504740 MtrunA17_Chr2g0328791 24.719 178 127 2 59 235 14 185 7.39e-12 64.3
Msa0504740 MtrunA17_Chr5g0402191 26.554 177 115 4 60 235 4 166 2.93e-11 62.4
Msa0504740 MtrunA17_Chr8g0375101 25.568 176 118 3 60 235 4 166 3.16e-11 62.4
Msa0504740 MtrunA17_Chr6g0465751 29.798 198 115 9 44 229 187 372 6.37e-11 61.6
Msa0504740 MtrunA17_Chr6g0465751 25.000 172 115 4 62 232 27 185 9.97e-11 61.2
Msa0504740 MtrunA17_Chr4g0035051 34.940 83 54 0 153 235 2 84 7.25e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504740 AT3G52150.2 68.812 202 57 4 40 235 52 253 1.81e-92 272
Msa0504740 AT3G52150.1 68.812 202 57 4 40 235 52 253 1.81e-92 272
Msa0504740 AT3G52380.1 41.885 191 103 2 51 235 107 295 3.10e-45 154
Msa0504740 AT1G60000.1 36.614 254 134 5 1 235 8 253 9.65e-39 135
Msa0504740 AT2G37220.1 36.548 197 95 2 61 235 92 280 9.02e-35 125
Msa0504740 AT5G50250.1 38.122 181 107 2 55 235 108 283 1.83e-34 125
Msa0504740 AT5G50250.1 41.026 78 46 0 61 138 208 285 1.11e-13 69.3
Msa0504740 AT4G24770.1 38.830 188 109 3 49 235 138 320 3.37e-31 117
Msa0504740 AT4G24770.1 46.341 82 43 1 57 138 242 322 3.47e-17 79.3
Msa0504740 AT4G24770.2 38.830 188 109 3 49 235 138 320 3.37e-31 117
Msa0504740 AT4G24770.2 46.341 82 43 1 57 138 242 322 3.47e-17 79.3
Msa0504740 AT1G01080.1 33.505 194 123 3 47 235 95 287 1.11e-22 94.0
Msa0504740 AT2G35410.1 33.871 186 112 4 51 230 86 266 2.26e-22 93.6
Msa0504740 AT1G01080.2 33.333 195 123 4 47 235 95 288 2.21e-21 90.5
Msa0504740 AT1G01080.3 33.333 183 116 3 47 224 95 276 1.63e-20 88.2
Msa0504740 AT1G22760.1 33.846 195 115 6 41 225 207 397 2.11e-18 84.0
Msa0504740 AT1G71770.1 33.333 195 116 6 41 225 217 407 2.39e-17 81.3
Msa0504740 AT1G71770.1 28.070 171 110 3 62 232 61 218 3.30e-12 65.9
Msa0504740 AT1G71770.2 33.333 195 116 6 41 225 217 407 2.39e-17 81.3
Msa0504740 AT1G71770.2 28.070 171 110 3 62 232 61 218 3.30e-12 65.9
Msa0504740 AT3G13224.3 29.189 185 108 6 58 235 8 176 3.62e-17 79.7
Msa0504740 AT3G14100.1 32.044 181 109 4 55 235 54 220 7.95e-17 79.3
Msa0504740 AT3G14100.1 28.571 182 104 3 62 221 146 323 5.27e-14 70.9
Msa0504740 AT3G13224.1 29.885 174 99 6 55 221 14 171 4.37e-16 75.1
Msa0504740 AT3G16380.1 30.806 211 133 5 33 235 174 379 4.57e-16 77.0
Msa0504740 AT3G16380.1 29.213 178 108 5 62 235 114 277 2.77e-12 66.2
Msa0504740 AT3G13224.2 28.723 188 111 6 55 235 14 185 7.67e-16 75.9
Msa0504740 AT1G49760.1 28.736 174 108 3 62 233 47 206 1.99e-15 75.5
Msa0504740 AT1G49760.1 31.361 169 109 3 62 225 226 392 2.78e-13 69.3
Msa0504740 AT1G49760.1 28.191 188 121 5 53 235 121 299 7.27e-12 65.1
Msa0504740 AT1G49760.2 28.736 174 108 3 62 233 47 206 1.99e-15 75.5
Msa0504740 AT1G49760.2 31.361 169 109 3 62 225 226 392 2.78e-13 69.3
Msa0504740 AT1G49760.2 28.191 188 121 5 53 235 121 299 7.27e-12 65.1
Msa0504740 AT1G54080.1 30.387 181 112 4 55 235 58 224 2.00e-15 75.1
Msa0504740 AT1G54080.1 27.320 194 114 4 62 232 150 339 7.43e-13 67.8
Msa0504740 AT2G36660.1 30.114 176 116 3 62 232 203 376 6.17e-15 73.9
Msa0504740 AT2G36660.1 28.652 178 115 3 57 234 21 186 8.24e-13 67.8
Msa0504740 AT4G09040.1 24.889 225 144 6 29 235 49 266 7.67e-15 72.8
Msa0504740 AT4G09040.2 26.263 198 132 5 42 235 19 206 9.91e-15 71.6
Msa0504740 AT1G17370.1 30.387 181 112 4 55 235 49 215 1.17e-14 72.8
Msa0504740 AT1G17370.1 26.154 195 117 4 62 233 141 331 3.83e-14 71.2
Msa0504740 AT1G17370.2 30.387 181 112 4 55 235 49 215 1.29e-14 72.8
Msa0504740 AT1G17370.2 26.562 192 117 4 62 233 141 328 9.91e-14 70.1
Msa0504740 AT2G23350.1 32.768 177 110 4 62 232 227 400 1.39e-14 72.8
Msa0504740 AT2G23350.1 32.402 179 110 5 58 235 132 300 5.15e-13 68.2
Msa0504740 AT1G54080.2 30.270 185 111 5 55 235 58 228 2.95e-14 71.6
Msa0504740 AT1G54080.2 29.341 167 91 4 89 232 181 343 2.07e-11 63.5
Msa0504740 AT4G34110.1 32.768 177 110 5 62 232 217 390 5.30e-14 71.2
Msa0504740 AT4G34110.1 30.270 185 113 6 57 235 116 290 3.08e-13 68.9
Msa0504740 AT4G34110.1 25.581 172 116 2 62 233 38 197 1.40e-12 67.0
Msa0504740 AT2G18510.1 27.429 175 114 2 62 235 27 189 2.35e-13 68.9
Msa0504740 AT1G34140.1 32.222 180 114 5 62 235 121 298 3.09e-13 68.6
Msa0504740 AT3G53460.4 43.421 76 43 0 160 235 279 354 5.19e-13 67.8
Msa0504740 AT3G53460.4 38.961 77 47 0 61 137 279 355 1.47e-11 63.5
Msa0504740 AT3G53460.1 43.421 76 43 0 160 235 258 333 5.59e-13 67.8
Msa0504740 AT3G53460.1 44.304 79 44 0 61 139 100 178 2.90e-12 65.5
Msa0504740 AT3G53460.1 38.961 77 47 0 61 137 258 334 1.32e-11 63.5
Msa0504740 AT3G53460.3 43.421 76 43 0 160 235 258 333 5.59e-13 67.8
Msa0504740 AT3G53460.3 44.304 79 44 0 61 139 100 178 2.90e-12 65.5
Msa0504740 AT3G53460.3 38.961 77 47 0 61 137 258 334 1.32e-11 63.5
Msa0504740 AT3G53460.2 43.421 76 43 0 160 235 258 333 5.59e-13 67.8
Msa0504740 AT3G53460.2 44.304 79 44 0 61 139 100 178 2.90e-12 65.5
Msa0504740 AT3G53460.2 38.961 77 47 0 61 137 258 334 1.32e-11 63.5
Msa0504740 AT4G13860.1 43.836 73 41 0 160 232 4 76 1.06e-12 62.4
Msa0504740 AT4G13860.1 37.333 75 47 0 61 135 4 78 3.01e-11 58.5
Msa0504740 AT5G40490.1 25.275 182 111 4 61 235 43 206 1.43e-12 66.6
Msa0504740 AT5G19350.2 23.034 178 129 2 59 235 23 193 6.35e-11 62.0
Msa0504740 AT5G19350.1 23.034 178 129 2 59 235 23 193 6.69e-11 62.0

Find 64 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAAACCTCCTGTTGTTAA+AGG 0.202407 3_4:+49721262 None:intergenic
AGAAGGTGTTGTTGTCGTTT+TGG 0.261003 3_4:+49725307 None:intergenic
GTGAGTTAGAGAAAGGAAAT+TGG 0.272472 3_4:+49725358 None:intergenic
AAATAATCTTATTATCTTGT+TGG 0.293456 3_4:+49725508 None:intergenic
TTTATCTCATGACAGCAAAT+TGG 0.319543 3_4:-49721319 Msa0504740:intron
TGTTAACTGCAGTTGTTAGA+AGG 0.327875 3_4:-49720176 Msa0504740:intron
TGTATGACAAATACTCTAAA+AGG 0.332650 3_4:-49721512 Msa0504740:CDS
GCCAAGGTTTCACGGGTTCC+TGG 0.336172 3_4:-49721115 Msa0504740:CDS
ACAAGGTCTCAAAATCATTC+TGG 0.344549 3_4:+49720026 None:intergenic
ACCTCAAAATCCAGTGGTTT+CGG 0.344689 3_4:-49721091 Msa0504740:CDS
TGAGTTAGAGAAAGGAAATT+GGG 0.352273 3_4:+49725359 None:intergenic
GCAGAAAATCCGAGTGAATA+AGG 0.353968 3_4:-49720153 Msa0504740:CDS
CAAGGTATATGTGGGAAATC+TGG 0.373394 3_4:-49721200 Msa0504740:CDS
TGTGGATGAAATTATGTAAC+TGG 0.376336 3_4:+49725427 None:intergenic
TTTCCCACATATACCTTGTA+AGG 0.379798 3_4:+49721205 None:intergenic
ACCGTGTTCTTGAACAATCT+TGG 0.390869 3_4:+49725151 None:intergenic
TATGGGATGGTTAAAATTGA+TGG 0.399722 3_4:+49719789 None:intergenic
TGAAATTATGTAACTGGAAA+TGG 0.408088 3_4:+49725433 None:intergenic
GCGGATTCCTCGGCCTGGAC+TGG 0.418312 3_4:+49721241 None:intergenic
TGCATCAGTGAATGTTCATA+AGG 0.419312 3_4:+49719860 None:intergenic
CTCTTAGTGCCAAGGTTTCA+CGG 0.433896 3_4:-49721123 Msa0504740:CDS
GCATCAGTGAATGTTCATAA+GGG 0.471622 3_4:+49719861 None:intergenic
CCAAGGTTTCACGGGTTCCT+GGG 0.476496 3_4:-49721114 Msa0504740:CDS
CAGTCCTTACAAGGTATATG+TGG 0.476562 3_4:-49721209 Msa0504740:CDS
GTCTACAAATGCGGATTCCT+CGG 0.478263 3_4:+49721231 None:intergenic
AACAGGAGGTTTGCCAGTCC+AGG 0.484987 3_4:-49721254 Msa0504740:CDS
ATTTGTAGACAGTCCTTACA+AGG 0.497965 3_4:-49721218 Msa0504740:CDS
GTTACTCTCATGAATCTCCT+TGG 0.507839 3_4:+49720083 None:intergenic
ACTGATGCAGAGGCAAAAGT+TGG 0.512603 3_4:-49719846 Msa0504740:three_prime_UTR
CCCAGGAACCCGTGAAACCT+TGG 0.513301 3_4:+49721114 None:intergenic
TGTTTCTTCTGAACAAGCTA+CGG 0.513487 3_4:-49725243 Msa0504740:CDS
ATCTCATGACAGCAAATTGG+AGG 0.517324 3_4:-49721316 Msa0504740:intron
GTCGTAACGGCAAGGGAAGA+AGG 0.520520 3_4:+49725290 None:intergenic
GGTTAAAATTGATGGATGAA+AGG 0.523734 3_4:+49719797 None:intergenic
AAGTGTTGTGAGTTAGAGAA+AGG 0.537007 3_4:+49725351 None:intergenic
AGTAACAAAGCCGAAACCAC+TGG 0.538663 3_4:+49721081 None:intergenic
TCTTAGTGCCAAGGTTTCAC+GGG 0.544466 3_4:-49721122 Msa0504740:CDS
AGCAAATGCTCTTAGTGCCA+AGG 0.546104 3_4:-49721131 Msa0504740:CDS
TGCTGCGTTTGCATCCTCAA+CGG 0.548877 3_4:+49721458 None:intergenic
GAATTGAGTTTGGTGTGGTG+TGG 0.553615 3_4:+49725409 None:intergenic
GTTAACTGCAGTTGTTAGAA+GGG 0.555240 3_4:-49720175 Msa0504740:intron
CAAATGCGGATTCCTCGGCC+TGG 0.555822 3_4:+49721236 None:intergenic
TTTGTCAGCTTAGAGTTCCA+AGG 0.564425 3_4:-49720100 Msa0504740:three_prime_UTR
TCTAAAACGACGTGTCGTAA+CGG 0.571449 3_4:+49725277 None:intergenic
ACGACGTGTCGTAACGGCAA+GGG 0.574637 3_4:+49725283 None:intergenic
TTCTTCTGAACAAGCTACGG+TGG 0.598065 3_4:-49725240 Msa0504740:CDS
GCCAAGATTGTTCAAGAACA+CGG 0.603018 3_4:-49725152 Msa0504740:CDS
AATTGATGGATGAAAGGCAA+TGG 0.605109 3_4:+49719803 None:intergenic
GCAGCAGCTGAGAAACTCAA+TGG 0.608545 3_4:-49721441 Msa0504740:CDS
TGTTACAATGAAAACCGTTG+AGG 0.611936 3_4:-49721472 Msa0504740:CDS
AACGACGTGTCGTAACGGCA+AGG 0.612904 3_4:+49725282 None:intergenic
AGGTTTGCCAGTCCAGGCCG+AGG 0.614335 3_4:-49721248 Msa0504740:CDS
ATGAACATTCACTGATGCAG+AGG 0.619265 3_4:-49719856 Msa0504740:three_prime_UTR
AATTATGTAACTGGAAATGG+TGG 0.621073 3_4:+49725436 None:intergenic
CCAAACTCAATTCAAAACAA+TGG 0.623164 3_4:-49725399 Msa0504740:exon
GAGTTAGAGAAAGGAAATTG+GGG 0.630783 3_4:+49725360 None:intergenic
TCTCATGACAGCAAATTGGA+GGG 0.637188 3_4:-49721315 Msa0504740:intron
CCTGGGACCTCAAAATCCAG+TGG 0.638570 3_4:-49721097 Msa0504740:CDS
AGTCCTTACAAGGTATATGT+GGG 0.639932 3_4:-49721208 Msa0504740:CDS
GTAAGGACTGTCTACAAATG+CGG 0.643041 3_4:+49721222 None:intergenic
GCTGTTAGAAAACTCTACGT+TGG 0.657709 3_4:-49725209 Msa0504740:CDS
TAACAACAATAGACACAATG+TGG 0.677279 3_4:+49719938 None:intergenic
TAAATGTGAAGAAAGTAACA+AGG 0.704256 3_4:+49720009 None:intergenic
TCGTCATTACTAACAGTACG+AGG 0.729772 3_4:+49725179 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAGAAAAAGAAAAAA+GGG + chr3_4:49720216-49720235 None:intergenic 10.0%
!! ATATAAAAGAAAAAGAAAAA+AGG + chr3_4:49720217-49720236 None:intergenic 10.0%
!!! TTCTTTTATATTTTTTTTGT+TGG - chr3_4:49720226-49720245 Msa0504740:intron 10.0%
!!! TCTTAAACATTATTTTTTTT+TGG - chr3_4:49720261-49720280 Msa0504740:intron 10.0%
!!! AAAAACAAAAAAAACTTTTA+AGG - chr3_4:49721074-49721093 Msa0504740:CDS 10.0%
!!! TTTAAAAATGATTTTTGTTT+TGG + chr3_4:49721403-49721422 None:intergenic 10.0%
!! TACAAATTAAAAATGATAAA+AGG + chr3_4:49722728-49722747 None:intergenic 10.0%
!! TATATGTTGAAAAATAAAAA+GGG + chr3_4:49724587-49724606 None:intergenic 10.0%
!! ATATATGTTGAAAAATAAAA+AGG + chr3_4:49724588-49724607 None:intergenic 10.0%
!!! TTTATATTACATTTTTCTTT+TGG - chr3_4:49725330-49725349 Msa0504740:CDS 10.0%
!! CATAACAAAAAAAAAATAAA+TGG + chr3_4:49725428-49725447 None:intergenic 10.0%
!! AAATAATCTTATTATCTTGT+TGG + chr3_4:49719815-49719834 None:intergenic 15.0%
!!! TGATTTTGTGAAATTAATTT+TGG - chr3_4:49720303-49720322 Msa0504740:intron 15.0%
!!! AAATTAATTTTGGTTGAAAT+GGG - chr3_4:49720313-49720332 Msa0504740:intron 15.0%
!!! TTTTTTTGAACAAATCAAAA+TGG + chr3_4:49721058-49721077 None:intergenic 15.0%
!!! TTTTAATAATCTGTAACAAA+CGG + chr3_4:49721300-49721319 None:intergenic 15.0%
!! AATGTAGTATAATAGATTTA+AGG - chr3_4:49721616-49721635 Msa0504740:intron 15.0%
!!! ATAATAGATTTAAGGTAAAA+TGG - chr3_4:49721624-49721643 Msa0504740:intron 15.0%
!! ACTAAAAATTAAGATACATA+TGG + chr3_4:49721949-49721968 None:intergenic 15.0%
!!! TTTTAACTATTGTAATTTGT+AGG - chr3_4:49722143-49722162 Msa0504740:intron 15.0%
!!! TTTTGATATTAATAGAAGTT+GGG + chr3_4:49722310-49722329 None:intergenic 15.0%
!! AATACAAAAGAAAATCATAT+GGG + chr3_4:49722548-49722567 None:intergenic 15.0%
!!! TAAAGAAGTATATTTCAAAA+TGG - chr3_4:49722574-49722593 Msa0504740:intron 15.0%
!! GGTTACATTAATATTAAAAT+AGG - chr3_4:49723167-49723186 Msa0504740:intron 15.0%
!!! ATGAATTTTACTCATTTATA+AGG - chr3_4:49723553-49723572 Msa0504740:intron 15.0%
!!! TTTTATTATGATTGATTCAT+AGG - chr3_4:49723782-49723801 Msa0504740:intron 15.0%
!!! ATTAACAATTTTCAATTTCA+GGG + chr3_4:49724651-49724670 None:intergenic 15.0%
!!! TTTTTTTTTGTTATGTGAAT+TGG - chr3_4:49725433-49725452 Msa0504740:five_prime_UTR 15.0%
!!! GAAATTAATTTTGGTTGAAA+TGG - chr3_4:49720312-49720331 Msa0504740:intron 20.0%
!! GAATTGAAGTTTGTAAAATT+AGG - chr3_4:49720706-49720725 Msa0504740:intron 20.0%
!!! CTTCATTTTGAAAAATTAAC+TGG - chr3_4:49720739-49720758 Msa0504740:intron 20.0%
!!! ATGAAGAAATGTATGATTTT+AGG - chr3_4:49721272-49721291 Msa0504740:CDS 20.0%
!!! TGAAGAAATGTATGATTTTA+GGG - chr3_4:49721273-49721292 Msa0504740:CDS 20.0%
!! AGAATATGTTGTAAAAAACA+AGG - chr3_4:49721586-49721605 Msa0504740:intron 20.0%
!! TAATTTCATTTAACAAGAGA+AGG - chr3_4:49721889-49721908 Msa0504740:intron 20.0%
!! AAATGAAACCAAATAGATAA+AGG + chr3_4:49721984-49722003 None:intergenic 20.0%
!!! GTTTTGATATTAATAGAAGT+TGG + chr3_4:49722311-49722330 None:intergenic 20.0%
!! AAAACAAAACAAATCAAAGA+AGG - chr3_4:49722346-49722365 Msa0504740:intron 20.0%
!! CAATACAAAAGAAAATCATA+TGG + chr3_4:49722549-49722568 None:intergenic 20.0%
!!! CATTTTTAATTTGTAGAAGT+TGG - chr3_4:49722733-49722752 Msa0504740:intron 20.0%
!!! GATTTTCTGTTTTAAGTTTA+TGG - chr3_4:49722895-49722914 Msa0504740:intron 20.0%
!! GAAATCAAAATTCTGTTAAA+GGG + chr3_4:49723403-49723422 None:intergenic 20.0%
!! TGAAATCAAAATTCTGTTAA+AGG + chr3_4:49723404-49723423 None:intergenic 20.0%
!!! AACAGAATTTTGATTTCATA+AGG - chr3_4:49723406-49723425 Msa0504740:intron 20.0%
!! TAAATGAGTAAAATTCATTG+AGG + chr3_4:49723551-49723570 None:intergenic 20.0%
!! TAATGTTCATTCAACAATTT+AGG - chr3_4:49723949-49723968 Msa0504740:intron 20.0%
!!! GAAAAATAAAAAGGGTATTT+CGG + chr3_4:49724579-49724598 None:intergenic 20.0%
!!! GATTAACAATTTTCAATTTC+AGG + chr3_4:49724652-49724671 None:intergenic 20.0%
!! GAAATTGAAAATTGTTAATC+TGG - chr3_4:49724652-49724671 Msa0504740:intron 20.0%
!! ATCAATCCTACATATATTAA+TGG - chr3_4:49724704-49724723 Msa0504740:intron 20.0%
!! ATGAAAAATATCAAAACTTG+AGG + chr3_4:49724955-49724974 None:intergenic 20.0%
!! TTACAATTTCTATCATGATT+TGG - chr3_4:49725019-49725038 Msa0504740:intron 20.0%
!! TACAATTTCTATCATGATTT+GGG - chr3_4:49725020-49725039 Msa0504740:intron 20.0%
! TGAAATTATGTAACTGGAAA+TGG + chr3_4:49719890-49719909 None:intergenic 25.0%
! TTCAGTATAATTACATGTGT+TGG - chr3_4:49720553-49720572 Msa0504740:intron 25.0%
!! TCACCTTAATTTGGTTAAAA+TGG - chr3_4:49720904-49720923 Msa0504740:intron 25.0%
!! CACCTTAATTTGGTTAAAAT+GGG - chr3_4:49720905-49720924 Msa0504740:intron 25.0%
!!! AACCCATTTTAACCAAATTA+AGG + chr3_4:49720910-49720929 None:intergenic 25.0%
!! TAATTTGGTTAAAATGGGTT+TGG - chr3_4:49720910-49720929 Msa0504740:intron 25.0%
!! TTTAAGGTACCTAGTTAAAA+TGG - chr3_4:49721090-49721109 Msa0504740:CDS 25.0%
!! TTAAGGTACCTAGTTAAAAT+GGG - chr3_4:49721091-49721110 Msa0504740:CDS 25.0%
! TTATTAGCTGAAACTCATAT+GGG + chr3_4:49721172-49721191 None:intergenic 25.0%
!! CTTAACATTCACTCTTTTAT+TGG + chr3_4:49721214-49721233 None:intergenic 25.0%
! ATCATACATTTCTTCATAAG+AGG + chr3_4:49721269-49721288 None:intergenic 25.0%
! GGTAAATGAAACATTTCATA+CGG - chr3_4:49721645-49721664 Msa0504740:intron 25.0%
! GAAGAATGAAAAAGTAATAG+CGG - chr3_4:49721674-49721693 Msa0504740:intron 25.0%
! ATGTACGTTTAAAGAAAACT+TGG - chr3_4:49721720-49721739 Msa0504740:intron 25.0%
! CACTAAACATAATTTAGCTA+TGG - chr3_4:49721762-49721781 Msa0504740:intron 25.0%
! GTTTAACTCCTTTATCTATT+TGG - chr3_4:49721973-49721992 Msa0504740:intron 25.0%
! AAGAAAATCATATGGGTTTA+GGG + chr3_4:49722541-49722560 None:intergenic 25.0%
! AAAGAAAATCATATGGGTTT+AGG + chr3_4:49722542-49722561 None:intergenic 25.0%
!! AGAAGTATATTTCAAAATGG+CGG - chr3_4:49722577-49722596 Msa0504740:intron 25.0%
!!! TTTCAGTTGTTTGTTTTAGA+AGG - chr3_4:49722602-49722621 Msa0504740:intron 25.0%
!!! TTGTTTGTTTTAGAAGGATT+TGG - chr3_4:49722608-49722627 Msa0504740:intron 25.0%
!!! TGTTTGTTTTAGAAGGATTT+GGG - chr3_4:49722609-49722628 Msa0504740:intron 25.0%
! ATTGAAAAGCAACATAGAAA+TGG - chr3_4:49722786-49722805 Msa0504740:intron 25.0%
! TTGAAAAGCAACATAGAAAT+GGG - chr3_4:49722787-49722806 Msa0504740:intron 25.0%
!!! AATGGGATAATGTTTTTAGT+TGG - chr3_4:49722804-49722823 Msa0504740:intron 25.0%
! TAGGAGAATTTAGATTTCAA+TGG - chr3_4:49723186-49723205 Msa0504740:intron 25.0%
!! GAAATGTAGAATTTAGTTCA+TGG - chr3_4:49723495-49723514 Msa0504740:intron 25.0%
! GTTATATGATAAATCCTACA+TGG + chr3_4:49723635-49723654 None:intergenic 25.0%
! AGGATTTATCATATAACCTA+AGG - chr3_4:49723638-49723657 Msa0504740:intron 25.0%
! AAAACATACAAAGAAAGTTG+AGG + chr3_4:49723714-49723733 None:intergenic 25.0%
! TGTATGACAAATACTCTAAA+AGG - chr3_4:49723808-49723827 Msa0504740:intron 25.0%
!! CAACAATTTAGGTTTCTTAA+AGG - chr3_4:49723960-49723979 Msa0504740:intron 25.0%
!! TAGCCTTAAAAATTTCTTCT+CGG - chr3_4:49724162-49724181 Msa0504740:intron 25.0%
!! TTTCCGAGAAGAAATTTTTA+AGG + chr3_4:49724168-49724187 None:intergenic 25.0%
! AGATGAAAAACAATCTACAA+AGG - chr3_4:49724479-49724498 Msa0504740:intron 25.0%
! GATGAAAAACAATCTACAAA+GGG - chr3_4:49724480-49724499 Msa0504740:intron 25.0%
! GATTTGATAAGAAATCCAAA+CGG + chr3_4:49724687-49724706 None:intergenic 25.0%
! AATCCTACATATATTAATGG+AGG - chr3_4:49724707-49724726 Msa0504740:intron 25.0%
! ATCCTACATATATTAATGGA+GGG - chr3_4:49724708-49724727 Msa0504740:intron 25.0%
!! AGTTTAGAATATTGATCATG+TGG - chr3_4:49724766-49724785 Msa0504740:intron 25.0%
!! AATTTAGTTCCTCAAATTGT+AGG + chr3_4:49724811-49724830 None:intergenic 25.0%
! ACAATTTGAGGAACTAAATT+AGG - chr3_4:49724811-49724830 Msa0504740:intron 25.0%
! ATGTTAACATATTTGGAGAT+GGG + chr3_4:49724996-49725015 None:intergenic 25.0%
! GTAAGTCATGTTAACATATT+TGG + chr3_4:49725003-49725022 None:intergenic 25.0%
! ACAATTTCTATCATGATTTG+GGG - chr3_4:49725021-49725040 Msa0504740:intron 25.0%
! TAAATGTGAAGAAAGTAACA+AGG + chr3_4:49725314-49725333 None:intergenic 25.0%
! TCTTGTTGGAAATGAGTTTT+TGG + chr3_4:49719801-49719820 None:intergenic 30.0%
!!! ATGGTGGTTTTGTTTTTAAG+AGG + chr3_4:49719871-49719890 None:intergenic 30.0%
AATTATGTAACTGGAAATGG+TGG + chr3_4:49719887-49719906 None:intergenic 30.0%
TGTGGATGAAATTATGTAAC+TGG + chr3_4:49719896-49719915 None:intergenic 30.0%
!!! CCATTGTTTTGAATTGAGTT+TGG + chr3_4:49719924-49719943 None:intergenic 30.0%
CCAAACTCAATTCAAAACAA+TGG - chr3_4:49719921-49719940 Msa0504740:three_prime_UTR 30.0%
TGAGTTAGAGAAAGGAAATT+GGG + chr3_4:49719964-49719983 None:intergenic 30.0%
! TTATGTGTTATTAGCTGTGT+CGG + chr3_4:49720533-49720552 None:intergenic 30.0%
!!! TGAACAAACCCATTTTAACT+AGG + chr3_4:49721102-49721121 None:intergenic 30.0%
! TAAAATGGGTTTGTTCAATG+TGG - chr3_4:49721105-49721124 Msa0504740:CDS 30.0%
! AAAATGGGTTTGTTCAATGT+GGG - chr3_4:49721106-49721125 Msa0504740:CDS 30.0%
GGAACACATTTCTTAATTGT+GGG + chr3_4:49721133-49721152 None:intergenic 30.0%
TGGAACACATTTCTTAATTG+TGG + chr3_4:49721134-49721153 None:intergenic 30.0%
CTTATTAGCTGAAACTCATA+TGG + chr3_4:49721173-49721192 None:intergenic 30.0%
TTCAAAAAAACACAAGTCGT+TGG - chr3_4:49721368-49721387 Msa0504740:intron 30.0%
TCAAAAAAACACAAGTCGTT+GGG - chr3_4:49721369-49721388 Msa0504740:intron 30.0%
CGTTTAAAGAAAACTTGGTT+TGG - chr3_4:49721725-49721744 Msa0504740:intron 30.0%
!! AAACTTGGTTTGGTTAATGT+AGG - chr3_4:49721735-49721754 Msa0504740:intron 30.0%
TTGCTTATTTAGTCTGTTTG+AGG + chr3_4:49722119-49722138 None:intergenic 30.0%
! ACTATTGTAATTTGTAGGTG+TGG - chr3_4:49722148-49722167 Msa0504740:intron 30.0%
CCTTTAGCAAAAAAAGTTGA+GGG + chr3_4:49722212-49722231 None:intergenic 30.0%
! ATAATGAGAGAAGCTTTTAG+TGG - chr3_4:49722254-49722273 Msa0504740:intron 30.0%
! TAATGAGAGAAGCTTTTAGT+GGG - chr3_4:49722255-49722274 Msa0504740:intron 30.0%
! TCTGATTTTCCCATAGAATT+CGG + chr3_4:49722286-49722305 None:intergenic 30.0%
! ACTGTCTCTTAACTTGAATT+CGG - chr3_4:49722470-49722489 Msa0504740:intron 30.0%
! TTAGCACTGAAGTATTTGAA+TGG - chr3_4:49722636-49722655 Msa0504740:intron 30.0%
!! TGGATTTGCTTATTTCTGTT+AGG - chr3_4:49722656-49722675 Msa0504740:intron 30.0%
!! GGATTTGCTTATTTCTGTTA+GGG - chr3_4:49722657-49722676 Msa0504740:intron 30.0%
!! GATTTGCTTATTTCTGTTAG+GGG - chr3_4:49722658-49722677 Msa0504740:intron 30.0%
!! ATTTGCTTATTTCTGTTAGG+GGG - chr3_4:49722659-49722678 Msa0504740:intron 30.0%
! AAAGGTTCTAGCATCAAAAT+CGG + chr3_4:49722710-49722729 None:intergenic 30.0%
TATTAATGTAACCTTTGCCA+GGG + chr3_4:49723160-49723179 None:intergenic 30.0%
ATATTAATGTAACCTTTGCC+AGG + chr3_4:49723161-49723180 None:intergenic 30.0%
GAGAATTTAGATTTCAATGG+TGG - chr3_4:49723189-49723208 Msa0504740:intron 30.0%
AATTTAGATTTCAATGGTGG+TGG - chr3_4:49723192-49723211 Msa0504740:intron 30.0%
!! AACAGTAAACTTGTTGTCAT+TGG - chr3_4:49723245-49723264 Msa0504740:intron 30.0%
AAGGATTAATGTAGTAGTGA+TGG - chr3_4:49723425-49723444 Msa0504740:intron 30.0%
TATTCTTGATAGACTAAGGT+AGG + chr3_4:49723461-49723480 None:intergenic 30.0%
AAGCTATTCTTGATAGACTA+AGG + chr3_4:49723465-49723484 None:intergenic 30.0%
GTCTATCAAGAATAGCTTAA+AGG - chr3_4:49723467-49723486 Msa0504740:intron 30.0%
TTTATCTCATGACAGCAAAT+TGG - chr3_4:49724001-49724020 Msa0504740:intron 30.0%
! TCCTGTTGTTAAAGGTTTTT+CGG + chr3_4:49724053-49724072 None:intergenic 30.0%
TTTCAGCATGCAAAATAAAC+AGG + chr3_4:49724336-49724355 None:intergenic 30.0%
TTATATGTCGCAAAACAGAA+CGG + chr3_4:49724622-49724641 None:intergenic 30.0%
ATCCCTCCATTAATATATGT+AGG + chr3_4:49724713-49724732 None:intergenic 30.0%
TGATATAGTCCTACAATTTG+AGG - chr3_4:49724799-49724818 Msa0504740:intron 30.0%
CATCAACAAAGAGACAAAAA+GGG + chr3_4:49724917-49724936 None:intergenic 30.0%
ACATCAACAAAGAGACAAAA+AGG + chr3_4:49724918-49724937 None:intergenic 30.0%
CATGTTAACATATTTGGAGA+TGG + chr3_4:49724997-49725016 None:intergenic 30.0%
AGTTAACATACAGCAAATCA+AGG + chr3_4:49725132-49725151 None:intergenic 30.0%
TAACAACAATAGACACAATG+TGG + chr3_4:49725385-49725404 None:intergenic 30.0%
!! GTTTTGAATTGAGTTTGGTG+TGG + chr3_4:49719919-49719938 None:intergenic 35.0%
GAGTTAGAGAAAGGAAATTG+GGG + chr3_4:49719963-49719982 None:intergenic 35.0%
GTGAGTTAGAGAAAGGAAAT+TGG + chr3_4:49719965-49719984 None:intergenic 35.0%
! AAGTGTTGTGAGTTAGAGAA+AGG + chr3_4:49719972-49719991 None:intergenic 35.0%
!!! TGTTGTCGTTTTGGGTTTTA+AGG + chr3_4:49720007-49720026 None:intergenic 35.0%
TGTTTCTTCTGAACAAGCTA+CGG - chr3_4:49720077-49720096 Msa0504740:three_prime_UTR 35.0%
!!! TAGTTTTGTTAGATCTCTCG+AGG - chr3_4:49720470-49720489 Msa0504740:intron 35.0%
!!! AGTTTTGTTAGATCTCTCGA+GGG - chr3_4:49720471-49720490 Msa0504740:intron 35.0%
GTAAACTGATGACAACTGAT+TGG - chr3_4:49720831-49720850 Msa0504740:intron 35.0%
AACTGATTGGATGTTGGATT+GGG - chr3_4:49720844-49720863 Msa0504740:intron 35.0%
CTATCACCAACAAAACTCTT+GGG - chr3_4:49720870-49720889 Msa0504740:intron 35.0%
GAAATGTGTTCCACATAAAG+TGG - chr3_4:49721141-49721160 Msa0504740:CDS 35.0%
CTCTTTGTAAATGATCACAC+AGG + chr3_4:49722044-49722063 None:intergenic 35.0%
CTGTGTGATCATTTACAAAG+AGG - chr3_4:49722042-49722061 Msa0504740:intron 35.0%
GTCTTGAATTAGAACCTTAC+AGG - chr3_4:49722080-49722099 Msa0504740:intron 35.0%
! ATTGTAATTTGTAGGTGTGG+TGG - chr3_4:49722151-49722170 Msa0504740:intron 35.0%
!!! CCCTCAACTTTTTTTGCTAA+AGG - chr3_4:49722209-49722228 Msa0504740:intron 35.0%
GCCTTTAGCAAAAAAAGTTG+AGG + chr3_4:49722213-49722232 None:intergenic 35.0%
TTGCTAAAGGCAGAAAGAAA+TGG - chr3_4:49722222-49722241 Msa0504740:intron 35.0%
TGCTAAAGGCAGAAAGAAAT+GGG - chr3_4:49722223-49722242 Msa0504740:intron 35.0%
TAAGAGACAGTAAGAGAAAG+AGG + chr3_4:49722461-49722480 None:intergenic 35.0%
! CTGTCTCTTAACTTGAATTC+GGG - chr3_4:49722471-49722490 Msa0504740:intron 35.0%
! TTGAATTCGGGTATTTTCCA+TGG - chr3_4:49722483-49722502 Msa0504740:intron 35.0%
AATTGAAAGATCTCTCACCA+TGG + chr3_4:49722503-49722522 None:intergenic 35.0%
!! GTATTATGCTGCTACTTTCA+TGG - chr3_4:49722842-49722861 Msa0504740:intron 35.0%
ATGTACTTCTTACCAAAGCA+AGG + chr3_4:49722872-49722891 None:intergenic 35.0%
! TTATGGCTGTTTATCCCTTT+TGG - chr3_4:49722912-49722931 Msa0504740:intron 35.0%
TATAAGGTGAAACTGTTCAG+TGG - chr3_4:49723569-49723588 Msa0504740:intron 35.0%
TGTTCAGTACATGTCATCAA+TGG + chr3_4:49723609-49723628 None:intergenic 35.0%
TCTTGTCAACTCATATCCTT+AGG + chr3_4:49723657-49723676 None:intergenic 35.0%
TGTTACAATGAAAACCGTTG+AGG - chr3_4:49723848-49723867 Msa0504740:intron 35.0%
ACCGAAAAACCTTTAACAAC+AGG - chr3_4:49724049-49724068 Msa0504740:intron 35.0%
GAAAAACCTTTAACAACAGG+AGG - chr3_4:49724052-49724071 Msa0504740:intron 35.0%
ATTTGTAGACAGTCCTTACA+AGG - chr3_4:49724102-49724121 Msa0504740:intron 35.0%
AGTCCTTACAAGGTATATGT+GGG - chr3_4:49724112-49724131 Msa0504740:intron 35.0%
TTTCCCACATATACCTTGTA+AGG + chr3_4:49724118-49724137 None:intergenic 35.0%
!!! TGTTACTTTTTCATCAGACG+AGG - chr3_4:49724255-49724274 Msa0504740:intron 35.0%
GCATGCAAAATAAACAGGAA+GGG + chr3_4:49724331-49724350 None:intergenic 35.0%
AGCATGCAAAATAAACAGGA+AGG + chr3_4:49724332-49724351 None:intergenic 35.0%
CCATGTACTTGAAGTATATC+AGG + chr3_4:49724362-49724381 None:intergenic 35.0%
CCTGATATACTTCAAGTACA+TGG - chr3_4:49724359-49724378 Msa0504740:intron 35.0%
GTTTGGAGAAGTAACTCTAA+CGG + chr3_4:49724387-49724406 None:intergenic 35.0%
ACAAACATCATCATCAAGCA+AGG + chr3_4:49724409-49724428 None:intergenic 35.0%
AAGATTGGCAAAATGTTAGC+AGG - chr3_4:49724508-49724527 Msa0504740:intron 35.0%
TATATGTCGCAAAACAGAAC+GGG + chr3_4:49724621-49724640 None:intergenic 35.0%
TGATAAGAAATCCAAACGGA+GGG + chr3_4:49724683-49724702 None:intergenic 35.0%
TTGATAAGAAATCCAAACGG+AGG + chr3_4:49724684-49724703 None:intergenic 35.0%
CACAAATGTGATGTTTATGC+GGG + chr3_4:49724869-49724888 None:intergenic 35.0%
CCACAAATGTGATGTTTATG+CGG + chr3_4:49724870-49724889 None:intergenic 35.0%
! ATGAGAGCAGCTATTTCATT+TGG + chr3_4:49724894-49724913 None:intergenic 35.0%
ATTTGGGGACTCTATTCAAT+GGG - chr3_4:49725036-49725055 Msa0504740:intron 35.0%
TGTTAACTGCAGTTGTTAGA+AGG - chr3_4:49725144-49725163 Msa0504740:CDS 35.0%
GTTAACTGCAGTTGTTAGAA+GGG - chr3_4:49725145-49725164 Msa0504740:CDS 35.0%
!! TTTTCTACGCCTTATTCACT+CGG + chr3_4:49725179-49725198 None:intergenic 35.0%
ACAAGGTCTCAAAATCATTC+TGG + chr3_4:49725297-49725316 None:intergenic 35.0%
GCATCAGTGAATGTTCATAA+GGG + chr3_4:49725462-49725481 None:intergenic 35.0%
TGCATCAGTGAATGTTCATA+AGG + chr3_4:49725463-49725482 None:intergenic 35.0%
! AATTGATGGATGAAAGGCAA+TGG + chr3_4:49725520-49725539 None:intergenic 35.0%
!!! GAAGGTGTTGTTGTCGTTTT+GGG + chr3_4:49720015-49720034 None:intergenic 40.0%
!!! AGAAGGTGTTGTTGTCGTTT+TGG + chr3_4:49720016-49720035 None:intergenic 40.0%
! TCTAAAACGACGTGTCGTAA+CGG + chr3_4:49720046-49720065 None:intergenic 40.0%
! ACGTAGAGTTTTCTAACAGC+AGG + chr3_4:49720111-49720130 None:intergenic 40.0%
GCTGTTAGAAAACTCTACGT+TGG - chr3_4:49720111-49720130 Msa0504740:three_prime_UTR 40.0%
TCGTCATTACTAACAGTACG+AGG + chr3_4:49720144-49720163 None:intergenic 40.0%
GCCAAGATTGTTCAAGAACA+CGG - chr3_4:49720168-49720187 Msa0504740:intron 40.0%
ACCGTGTTCTTGAACAATCT+TGG + chr3_4:49720172-49720191 None:intergenic 40.0%
TTAACCGGAGATTCTGGATT+CGG - chr3_4:49720431-49720450 Msa0504740:intron 40.0%
!! GTTTTGTTAGATCTCTCGAG+GGG - chr3_4:49720472-49720491 Msa0504740:intron 40.0%
CATAGACTAATCTCTCATGC+TGG + chr3_4:49720669-49720688 None:intergenic 40.0%
!! GCATGAGAGATTAGTCTATG+TGG - chr3_4:49720669-49720688 Msa0504740:intron 40.0%
GATGACAACTGATTGGATGT+TGG - chr3_4:49720838-49720857 Msa0504740:intron 40.0%
CAACTGATTGGATGTTGGAT+TGG - chr3_4:49720843-49720862 Msa0504740:intron 40.0%
!!! CCAAGAGTTTTGTTGGTGAT+AGG + chr3_4:49720872-49720891 None:intergenic 40.0%
CCTATCACCAACAAAACTCT+TGG - chr3_4:49720869-49720888 Msa0504740:intron 40.0%
! GTGGAGTGTTCACCTTAATT+TGG - chr3_4:49720895-49720914 Msa0504740:intron 40.0%
ATGGGTTTGACCACTTTATG+TGG + chr3_4:49721154-49721173 None:intergenic 40.0%
AAAAGTAATAGCGGCTTTGC+AGG - chr3_4:49721683-49721702 Msa0504740:intron 40.0%
TGTTGTTCTCATTCTCAGAG+TGG - chr3_4:49721854-49721873 Msa0504740:intron 40.0%
GCAAAAAAAGTTGAGGGAGA+GGG + chr3_4:49722206-49722225 None:intergenic 40.0%
AGCAAAAAAAGTTGAGGGAG+AGG + chr3_4:49722207-49722226 None:intergenic 40.0%
!! TGGGAAGTACCGAATTCTAT+GGG - chr3_4:49722274-49722293 Msa0504740:intron 40.0%
ACAGTAAGAGAAAGAGGAAG+AGG + chr3_4:49722455-49722474 None:intergenic 40.0%
TTTCATGGAGAACCTTGCTT+TGG - chr3_4:49722857-49722876 Msa0504740:intron 40.0%
TCTTGTCTTGCAGACCAAAA+GGG + chr3_4:49722929-49722948 None:intergenic 40.0%
ATCTTGTCTTGCAGACCAAA+AGG + chr3_4:49722930-49722949 None:intergenic 40.0%
TGGTCTGCAAGACAAGATTA+AGG - chr3_4:49722932-49722951 Msa0504740:intron 40.0%
CCATTAATGTGCGATGCAAA+TGG + chr3_4:49723028-49723047 None:intergenic 40.0%
CCATTTGCATCGCACATTAA+TGG - chr3_4:49723025-49723044 Msa0504740:intron 40.0%
!! TTAGATTTCAATGGTGGTGG+TGG - chr3_4:49723195-49723214 Msa0504740:intron 40.0%
! CTTGTTGTCATTGGACTGAA+AGG - chr3_4:49723254-49723273 Msa0504740:intron 40.0%
GCAGTTTCAAGAACTTGAAC+CGG + chr3_4:49723283-49723302 None:intergenic 40.0%
! TTACCCTGTGTTTTACACAG+AGG + chr3_4:49723305-49723324 None:intergenic 40.0%
TGTACTGAACAATGCCATGT+AGG - chr3_4:49723618-49723637 Msa0504740:intron 40.0%
CTTGATGCACTCGATATTTG+TGG + chr3_4:49723750-49723769 None:intergenic 40.0%
ATCTCATGACAGCAAATTGG+AGG - chr3_4:49724004-49724023 Msa0504740:intron 40.0%
TCTCATGACAGCAAATTGGA+GGG - chr3_4:49724005-49724024 Msa0504740:intron 40.0%
GTAAGGACTGTCTACAAATG+CGG + chr3_4:49724101-49724120 None:intergenic 40.0%
CAGTCCTTACAAGGTATATG+TGG - chr3_4:49724111-49724130 Msa0504740:intron 40.0%
CAAGGTATATGTGGGAAATC+TGG - chr3_4:49724120-49724139 Msa0504740:intron 40.0%
ACCTCAAAATCCAGTGGTTT+CGG - chr3_4:49724229-49724248 Msa0504740:intron 40.0%
CATCATCATCAAGCAAGGTT+TGG + chr3_4:49724404-49724423 None:intergenic 40.0%
CTACCATAAACCCTTCTAGT+AGG + chr3_4:49724537-49724556 None:intergenic 40.0%
CCGCATAAACATCACATTTG+TGG - chr3_4:49724867-49724886 Msa0504740:intron 40.0%
GATTTGGGGACTCTATTCAA+TGG - chr3_4:49725035-49725054 Msa0504740:intron 40.0%
GCAGAAAATCCGAGTGAATA+AGG - chr3_4:49725167-49725186 Msa0504740:CDS 40.0%
TTTGTCAGCTTAGAGTTCCA+AGG - chr3_4:49725220-49725239 Msa0504740:CDS 40.0%
GTTACTCTCATGAATCTCCT+TGG + chr3_4:49725240-49725259 None:intergenic 40.0%
ATGAACATTCACTGATGCAG+AGG - chr3_4:49725464-49725483 Msa0504740:five_prime_UTR 40.0%
!! GAATTGAGTTTGGTGTGGTG+TGG + chr3_4:49719914-49719933 None:intergenic 45.0%
TTCTTCTGAACAAGCTACGG+TGG - chr3_4:49720080-49720099 Msa0504740:three_prime_UTR 45.0%
! ATTTGTTTGACCAAGAGCGC+TGG - chr3_4:49720396-49720415 Msa0504740:intron 45.0%
AATCTCCGGTTAAGCTGGAA+CGG + chr3_4:49720424-49720443 None:intergenic 45.0%
GAATCCGAATCCAGAATCTC+CGG + chr3_4:49720438-49720457 None:intergenic 45.0%
TCCACAGATAAGGTGTGTTC+CGG + chr3_4:49720613-49720632 None:intergenic 45.0%
AACACACCTTATCTGTGGAG+TGG - chr3_4:49720614-49720633 Msa0504740:intron 45.0%
ACACAACCACTCCACAGATA+AGG + chr3_4:49720623-49720642 None:intergenic 45.0%
!! CCACTACCCAAGAGTTTTGT+TGG + chr3_4:49720879-49720898 None:intergenic 45.0%
CCAACAAAACTCTTGGGTAG+TGG - chr3_4:49720876-49720895 Msa0504740:intron 45.0%
AAGATGATTCACCTCGCACA+AGG + chr3_4:49721017-49721036 None:intergenic 45.0%
GCTTTCTAATGCAGCCTGTA+AGG + chr3_4:49722097-49722116 None:intergenic 45.0%
!! GTGGGAAGTACCGAATTCTA+TGG - chr3_4:49722273-49722292 Msa0504740:intron 45.0%
! CTTTGGTGAAAAGAGTGTGG+CGG + chr3_4:49722388-49722407 None:intergenic 45.0%
! GCCACACTCTTTTCACCAAA+GGG - chr3_4:49722387-49722406 Msa0504740:intron 45.0%
! CCACACTCTTTTCACCAAAG+GGG - chr3_4:49722388-49722407 Msa0504740:intron 45.0%
! CTCTTTTCACCAAAGGGGTT+TGG - chr3_4:49722393-49722412 Msa0504740:intron 45.0%
ATACCAAAGCCAAACCCCTT+TGG + chr3_4:49722405-49722424 None:intergenic 45.0%
!! TGCTTATTTCTGTTAGGGGG+AGG - chr3_4:49722662-49722681 Msa0504740:intron 45.0%
!! GCTTATTTCTGTTAGGGGGA+GGG - chr3_4:49722663-49722682 Msa0504740:intron 45.0%
!! GTTTTGTTGCAGGAAGAGAG+TGG - chr3_4:49723065-49723084 Msa0504740:intron 45.0%
TCATTGGACTGAAAGGTCAC+CGG - chr3_4:49723261-49723280 Msa0504740:intron 45.0%
ACTGCCTCTGTGTAAAACAC+AGG - chr3_4:49723298-49723317 Msa0504740:intron 45.0%
CTGCCTCTGTGTAAAACACA+GGG - chr3_4:49723299-49723318 Msa0504740:intron 45.0%
ACTGCTCACAATGCACCAAA+TGG - chr3_4:49723326-49723345 Msa0504740:intron 45.0%
AATTCTGTTAAAGGGCAGCC+CGG + chr3_4:49723395-49723414 None:intergenic 45.0%
! TGTAGTAGTGATGGTGAGTC+AGG - chr3_4:49723434-49723453 Msa0504740:intron 45.0%
GGCAAACCTCCTGTTGTTAA+AGG + chr3_4:49724061-49724080 None:intergenic 45.0%
GTCTACAAATGCGGATTCCT+CGG + chr3_4:49724092-49724111 None:intergenic 45.0%
AGCAAATGCTCTTAGTGCCA+AGG - chr3_4:49724189-49724208 Msa0504740:intron 45.0%
CTCTTAGTGCCAAGGTTTCA+CGG - chr3_4:49724197-49724216 Msa0504740:intron 45.0%
TCTTAGTGCCAAGGTTTCAC+GGG - chr3_4:49724198-49724217 Msa0504740:intron 45.0%
AGTAACAAAGCCGAAACCAC+TGG + chr3_4:49724242-49724261 None:intergenic 45.0%
!! CTACAAAGGGCGTCTAAGAT+TGG - chr3_4:49724493-49724512 Msa0504740:intron 45.0%
CCATAAACCCTTCTAGTAGG+AGG + chr3_4:49724534-49724553 None:intergenic 45.0%
CCTCCTACTAGAAGGGTTTA+TGG - chr3_4:49724531-49724550 Msa0504740:intron 45.0%
AAGAAATCCAAACGGAGGGA+CGG + chr3_4:49724679-49724698 None:intergenic 45.0%
TATGCGGGAACTTGTGATGA+TGG + chr3_4:49724854-49724873 None:intergenic 45.0%
ACTGATGCAGAGGCAAAAGT+TGG - chr3_4:49725474-49725493 Msa0504740:intron 45.0%
!! CGGTGCTGTTGAAAAAGCTG+AGG - chr3_4:49720188-49720207 Msa0504740:intron 50.0%
TGGTTCCGTTCCAGCTTAAC+CGG - chr3_4:49720416-49720435 Msa0504740:intron 50.0%
TCCAGCTTAACCGGAGATTC+TGG - chr3_4:49720425-49720444 Msa0504740:intron 50.0%
TCCAGAATCTCCGGTTAAGC+TGG + chr3_4:49720429-49720448 None:intergenic 50.0%
GTCAGTGTCCGTGCTTCATT+GGG + chr3_4:49720507-49720526 None:intergenic 50.0%
TGTCAGTGTCCGTGCTTCAT+TGG + chr3_4:49720508-49720527 None:intergenic 50.0%
!! TGTTGGTGTCGTGTCAGTGT+TGG - chr3_4:49720570-49720589 Msa0504740:intron 50.0%
GGACACGACACATTTGACAC+CGG - chr3_4:49720591-49720610 Msa0504740:intron 50.0%
ACCGGAACACACCTTATCTG+TGG - chr3_4:49720609-49720628 Msa0504740:intron 50.0%
! CTTTTAGCACACCTTGTGCG+AGG - chr3_4:49721003-49721022 Msa0504740:intron 50.0%
! CGCCACACTCTTTTCACCAA+AGG - chr3_4:49722386-49722405 Msa0504740:intron 50.0%
CCCCTTTGGTGAAAAGAGTG+TGG + chr3_4:49722391-49722410 None:intergenic 50.0%
! TCACCAAAGGGGTTTGGCTT+TGG - chr3_4:49722399-49722418 Msa0504740:intron 50.0%
!! CAAAAGTGCCATTCGCACCA+CGG - chr3_4:49722959-49722978 Msa0504740:intron 50.0%
TCTGGCAGTGAAACAGTAGC+TGG - chr3_4:49722989-49723008 Msa0504740:intron 50.0%
GCATCGCACATTAATGGTGC+TGG - chr3_4:49723031-49723050 Msa0504740:intron 50.0%
CTTTGCCAGGGAGAGAAAAC+AGG + chr3_4:49723148-49723167 None:intergenic 50.0%
! CTGTTTTCTCTCCCTGGCAA+AGG - chr3_4:49723146-49723165 Msa0504740:intron 50.0%
!! GATTTCAATGGTGGTGGTGG+TGG - chr3_4:49723198-49723217 Msa0504740:intron 50.0%
GCTCACAATGCACCAAATGG+CGG - chr3_4:49723329-49723348 Msa0504740:intron 50.0%
CTCACAATGCACCAAATGGC+GGG - chr3_4:49723330-49723349 Msa0504740:intron 50.0%
TGCTGCGTTTGCATCCTCAA+CGG + chr3_4:49723865-49723884 None:intergenic 50.0%
GCAGCAGCTGAGAAACTCAA+TGG - chr3_4:49723879-49723898 Msa0504740:intron 50.0%
! GCCGAAACCACTGGATTTTG+AGG + chr3_4:49724233-49724252 None:intergenic 50.0%
TTAGCAGGCCTCCTACTAGA+AGG - chr3_4:49724523-49724542 Msa0504740:intron 50.0%
TAGCAGGCCTCCTACTAGAA+GGG - chr3_4:49724524-49724543 Msa0504740:intron 50.0%
GTCGTAACGGCAAGGGAAGA+AGG + chr3_4:49720033-49720052 None:intergenic 55.0%
ACGACGTGTCGTAACGGCAA+GGG + chr3_4:49720040-49720059 None:intergenic 55.0%
AACGACGTGTCGTAACGGCA+AGG + chr3_4:49720041-49720060 None:intergenic 55.0%
GTTTGCCGCCCAATGAAGCA+CGG - chr3_4:49720496-49720515 Msa0504740:intron 55.0%
AGTGTCCGTGCTTCATTGGG+CGG + chr3_4:49720504-49720523 None:intergenic 55.0%
AGATACGACCGTGGTGCGAA+TGG + chr3_4:49722970-49722989 None:intergenic 55.0%
CAGTAGCTGGTCGTCAGTTG+AGG - chr3_4:49723002-49723021 Msa0504740:intron 55.0%
!! TAATGGTGCTGGTGCAGCAC+TGG - chr3_4:49723042-49723061 Msa0504740:intron 55.0%
!! AATGGTGCTGGTGCAGCACT+GGG - chr3_4:49723043-49723062 Msa0504740:intron 55.0%
!!! GCAGCACTGGGTTTTGTTGC+AGG - chr3_4:49723055-49723074 Msa0504740:intron 55.0%
! CACGTCCTGTTTTCTCTCCC+TGG - chr3_4:49723140-49723159 Msa0504740:intron 55.0%
!! TTCAATGGTGGTGGTGGTGG+TGG - chr3_4:49723201-49723220 Msa0504740:intron 55.0%
ACAAAGCTCCCGCCTATGCA+GGG + chr3_4:49723369-49723388 None:intergenic 55.0%
AACAGGAGGTTTGCCAGTCC+AGG - chr3_4:49724066-49724085 Msa0504740:intron 55.0%
CCAAGGTTTCACGGGTTCCT+GGG - chr3_4:49724206-49724225 Msa0504740:intron 55.0%
!!! CCACTGGATTTTGAGGTCCC+AGG + chr3_4:49724226-49724245 None:intergenic 55.0%
CCTGGGACCTCAAAATCCAG+TGG - chr3_4:49724223-49724242 Msa0504740:intron 55.0%
TGGAACGGAACCAGCGCTCT+TGG + chr3_4:49720409-49720428 None:intergenic 60.0%
TCGCACCACGGTCGTATCTC+TGG - chr3_4:49722971-49722990 Msa0504740:intron 60.0%
CACTGCCAGAGATACGACCG+TGG + chr3_4:49722979-49722998 None:intergenic 60.0%
!! AATGGTGGTGGTGGTGGTGG+TGG - chr3_4:49723204-49723223 Msa0504740:intron 60.0%
!! ATGGTGGTGGTGGTGGTGGT+GGG - chr3_4:49723205-49723224 Msa0504740:intron 60.0%
CCTATGCAGGGTCTGGGAAG+GGG + chr3_4:49723357-49723376 None:intergenic 60.0%
GCCTATGCAGGGTCTGGGAA+GGG + chr3_4:49723358-49723377 None:intergenic 60.0%
CTTCCCAGACCCTGCATAGG+CGG - chr3_4:49723357-49723376 Msa0504740:intron 60.0%
TTCCCAGACCCTGCATAGGC+GGG - chr3_4:49723358-49723377 Msa0504740:intron 60.0%
CACAAAGCTCCCGCCTATGC+AGG + chr3_4:49723370-49723389 None:intergenic 60.0%
! TAGGCGGGAGCTTTGTGCAC+CGG - chr3_4:49723373-49723392 Msa0504740:intron 60.0%
CAAATGCGGATTCCTCGGCC+TGG + chr3_4:49724087-49724106 None:intergenic 60.0%
GCCAAGGTTTCACGGGTTCC+TGG - chr3_4:49724205-49724224 Msa0504740:intron 60.0%
CCCAGGAACCCGTGAAACCT+TGG + chr3_4:49724209-49724228 None:intergenic 60.0%
ATCTGGTCCGTCCCTCCGTT+TGG - chr3_4:49724669-49724688 Msa0504740:intron 60.0%
!! TGGTGGTGGTGGTGGTGGGT+GGG - chr3_4:49723209-49723228 Msa0504740:intron 65.0%
TGGGAAGGGGTCCCGCCATT+TGG + chr3_4:49723344-49723363 None:intergenic 65.0%
CCCCTTCCCAGACCCTGCAT+AGG - chr3_4:49723354-49723373 Msa0504740:intron 65.0%
CGCCTATGCAGGGTCTGGGA+AGG + chr3_4:49723359-49723378 None:intergenic 65.0%
CTCCCGCCTATGCAGGGTCT+GGG + chr3_4:49723363-49723382 None:intergenic 65.0%
! AGGCGGGAGCTTTGTGCACC+GGG - chr3_4:49723374-49723393 Msa0504740:intron 65.0%
AGGTTTGCCAGTCCAGGCCG+AGG - chr3_4:49724072-49724091 Msa0504740:intron 65.0%
!! GTGGTGGTGGTGGTGGTGGG+TGG - chr3_4:49723208-49723227 Msa0504740:intron 70.0%
!! GGTGGTGGTGGTGGTGGGTG+GGG - chr3_4:49723210-49723229 Msa0504740:intron 70.0%
!! GTGGTGGTGGTGGTGGGTGG+GGG - chr3_4:49723211-49723230 Msa0504740:intron 70.0%
!! TGGTGGTGGTGGTGGGTGGG+GGG - chr3_4:49723212-49723231 Msa0504740:intron 70.0%
GCTCCCGCCTATGCAGGGTC+TGG + chr3_4:49723364-49723383 None:intergenic 70.0%
GCGGATTCCTCGGCCTGGAC+TGG + chr3_4:49724082-49724101 None:intergenic 70.0%
!! GGTGGTGGTGGTGGGTGGGG+GGG - chr3_4:49723213-49723232 Msa0504740:intron 75.0%
!! GTGGTGGTGGTGGGTGGGGG+GGG - chr3_4:49723214-49723233 Msa0504740:intron 75.0%
!! GGTGGTGGGTGGGGGGGGAT+TGG - chr3_4:49723219-49723238 Msa0504740:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 49719798 49725544 49719798 ID=Msa0504740;Name=Msa0504740
chr3_4 mRNA 49719798 49725544 49719798 ID=Msa0504740-mRNA-1;Parent=Msa0504740;Name=Msa0504740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=115|1|1|1|0.75|0.6|5|350|235
chr3_4 exon 49719798 49720186 49719798 ID=Msa0504740-mRNA-1:exon:10713;Parent=Msa0504740-mRNA-1
chr3_4 exon 49721030 49721326 49721030 ID=Msa0504740-mRNA-1:exon:10712;Parent=Msa0504740-mRNA-1
chr3_4 exon 49721437 49721538 49721437 ID=Msa0504740-mRNA-1:exon:10711;Parent=Msa0504740-mRNA-1
chr3_4 exon 49725133 49725487 49725133 ID=Msa0504740-mRNA-1:exon:10710;Parent=Msa0504740-mRNA-1
chr3_4 exon 49725515 49725544 49725515 ID=Msa0504740-mRNA-1:exon:10709;Parent=Msa0504740-mRNA-1
chr3_4 five_prime_UTR 49725515 49725544 49725515 ID=Msa0504740-mRNA-1:five_prime_utr;Parent=Msa0504740-mRNA-1
chr3_4 five_prime_UTR 49725403 49725487 49725403 ID=Msa0504740-mRNA-1:five_prime_utr;Parent=Msa0504740-mRNA-1
chr3_4 CDS 49725133 49725402 49725133 ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4 CDS 49721437 49721538 49721437 ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4 CDS 49721030 49721326 49721030 ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4 CDS 49720148 49720186 49720148 ID=Msa0504740-mRNA-1:cds;Parent=Msa0504740-mRNA-1
chr3_4 three_prime_UTR 49719798 49720147 49719798 ID=Msa0504740-mRNA-1:three_prime_utr;Parent=Msa0504740-mRNA-1
Gene Sequence

>Msa0504740

ATGGCTTCTCTACTCTCACACCCCAATTTCCTTTCTCTAACTCACAACACTTACACAAACTTTACCTTAAAACCCAAAACGACAACAACACCTTCTTCCCTTGCCGTTACGACACGTCGTTTTAGAAAACACTTTGTTGTTTCTTCTGAACAAGCTACGGTGGATTCTCCTGCTGTTAGAAAACTCTACGTTGGTAACATTCCTCGTACTGTTAGTAATGACGAACTTGCCAAGATTGTTCAAGAACACGGTGCTGTTGAAAAAGCTGAGGTTATGTATGACAAATACTCTAAAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACAGGAGGTTTGCCAGTCCAGGCCGAGGAATCCGCATTTGTAGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATAGCCTTAAAAATTTCTTCTCGGAAAAAGCAAATGCTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGTGGTTTCGGCTTTGTTACTTTTTCATCAGACGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTTTGTTAGAAGGGCAGAAAATCCGAGTGAATAAGGCGTAG
Protein sequence

>Msa0504740

MASLLSHPNFLSLTHNTYTNFTLKPKTTTTPSSLAVTTRRFRKHFVVSSEQATVDSPAVRKLYVGNIPRTVSNDELAKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGLPVQAEESAFVDSPYKVYVGNLAKNVTSDSLKNFFSEKANALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA*