AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0482020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482020 MtrunA17_Chr4g0058791 96.596 235 8 0 1 235 1 235 9.51e-170 468
Msa0482020 MtrunA17_Chr4g0058811 78.313 249 51 3 1 246 1 249 7.09e-141 395
Msa0482020 MtrunA17_Chr3g0131581 34.591 159 102 2 68 225 66 223 1.70e-26 103
Msa0482020 MtrunA17_Chr8g0385691 26.866 201 145 2 26 225 4 203 2.30e-24 97.8
Msa0482020 MtrunA17_Chr8g0385681 25.980 204 145 3 27 225 4 206 3.94e-23 94.7
Msa0482020 MtrunA17_Chr3g0115591 27.160 162 116 1 72 233 52 211 1.41e-21 91.7
Msa0482020 MtrunA17_Chr5g0425421 24.375 160 119 1 72 231 49 206 1.42e-14 72.0
Msa0482020 MtrunA17_Chr1g0155071 26.415 159 108 4 75 229 49 202 9.21e-14 69.3
Msa0482020 MtrunA17_Chr1g0161441 25.773 194 134 6 51 238 12 201 1.37e-13 68.6
Msa0482020 MtrunA17_Chr7g0254621 25.000 156 115 1 75 230 50 203 2.11e-13 68.9
Msa0482020 MtrunA17_Chr8g0373391 23.636 165 117 3 75 235 49 208 6.53e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482020 AT5G63060.1 57.895 228 91 2 20 246 27 250 1.14e-92 274
Msa0482020 AT5G63060.2 60.488 205 80 1 43 246 11 215 5.20e-89 263
Msa0482020 AT1G01630.1 26.471 170 121 2 68 235 49 216 1.58e-20 88.2
Msa0482020 AT4G08690.2 26.543 162 117 1 69 230 43 202 2.64e-17 80.1
Msa0482020 AT4G08690.1 26.543 162 117 1 69 230 43 202 2.64e-17 80.1
Msa0482020 AT4G08690.3 26.543 162 117 1 69 230 43 202 2.64e-17 80.1
Msa0482020 AT1G75170.2 25.641 156 113 2 75 229 50 203 2.02e-13 68.9
Msa0482020 AT1G75170.1 25.641 156 113 2 75 229 50 203 2.02e-13 68.9
Msa0482020 AT4G36640.1 26.923 156 111 2 75 229 47 200 2.61e-13 68.6
Msa0482020 AT4G36640.3 26.923 156 111 2 75 229 47 200 2.61e-13 68.6
Msa0482020 AT1G22180.2 26.220 164 119 1 72 235 49 210 6.30e-13 67.8
Msa0482020 AT1G22180.4 26.220 164 119 1 72 235 49 210 6.30e-13 67.8
Msa0482020 AT3G22410.1 24.390 164 122 2 68 230 30 192 1.27e-11 64.3
Msa0482020 AT1G14820.3 25.490 204 139 7 40 237 3 199 1.33e-11 63.2
Msa0482020 AT1G05370.1 25.806 155 114 1 75 229 48 201 2.99e-11 63.2
Msa0482020 AT1G22180.3 26.027 146 106 1 90 235 2 145 4.60e-11 61.6
Msa0482020 AT1G22180.1 26.027 146 106 1 90 235 2 145 4.60e-11 61.6
Msa0482020 AT1G14820.2 25.000 176 123 5 68 237 14 186 9.21e-11 60.8
Msa0482020 AT1G14820.1 25.000 176 123 5 68 237 14 186 9.21e-11 60.8

Find 117 sgRNAs with CRISPR-Local

Find 564 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGCACTGGAATGATTTA+AGG 0.133857 3_3:-88459990 None:intergenic
CTGCTGTGTTTAAGCCATTT+TGG 0.161420 3_3:+88452918 Msa0482020:CDS
GCAGCTCCGAACTACGAATT+TGG 0.209631 3_3:-88451465 None:intergenic
TCCAGTGCAAGTACAAAATT+TGG 0.213406 3_3:+88460001 Msa0482020:three_prime_UTR
GAACCACAAACTTGGTTCTA+AGG 0.250088 3_3:-88456517 None:intergenic
TTCAATATTGCCTCTATATA+TGG 0.250371 3_3:-88459795 None:intergenic
GTCTTCCAAGCAGACGAATT+TGG 0.270138 3_3:-88459821 None:intergenic
TCTTAAATACTTAACGTTCT+TGG 0.272685 3_3:+88458227 Msa0482020:three_prime_UTR
TATATGGTATTACTCTTAAA+AGG 0.280208 3_3:-88459779 None:intergenic
AACTTTCAATCTCTGAAGTT+TGG 0.282042 3_3:-88459505 None:intergenic
ATATTTGATCTCAGAGGTTT+TGG 0.288687 3_3:+88458189 Msa0482020:three_prime_UTR
ATATTTGATCTGAGAGGTTT+TGG 0.291482 3_3:+88452668 Msa0482020:CDS
CTCTTTGATTCCTACATACT+AGG 0.327480 3_3:-88459702 None:intergenic
TTCTTCATAAGCCGCCAAAA+TGG 0.332829 3_3:-88452932 None:intergenic
AACAGTATCTCTTGTATAAC+TGG 0.335272 3_3:+88459928 Msa0482020:three_prime_UTR
ATGATGAAGATATGATATTA+TGG 0.341339 3_3:+88456794 Msa0482020:three_prime_UTR
AGTTTGAGAGATATCTTTGA+TGG 0.355787 3_3:-88452300 None:intergenic
GGCTTGGTAAGCTGCCAAAT+TGG 0.365127 3_3:-88458484 None:intergenic
AGTCTTCCTGTTGGTAGAAA+TGG 0.370764 3_3:+88451701 Msa0482020:CDS
GTTAAAATCATATGCTTCTC+TGG 0.375363 3_3:+88458510 Msa0482020:three_prime_UTR
ATTTCTCTTGTTCGCGAGTA+TGG 0.379385 3_3:+88460060 Msa0482020:three_prime_UTR
CATAAGAAGATACAAGGAAA+TGG 0.380318 3_3:-88459679 None:intergenic
AGAGGAATTAGGCAGGAGAT+AGG 0.388870 3_3:+88459721 Msa0482020:three_prime_UTR
TTGAAGAACCATGCTTGTAT+AGG 0.390813 3_3:+88459652 Msa0482020:three_prime_UTR
AACATCTTTAACAGATTCTT+CGG 0.397936 3_3:-88457676 None:intergenic
CTTGTATAACTGGTGCAAAA+TGG 0.402372 3_3:+88459938 Msa0482020:three_prime_UTR
TGGATTGCATTTGGAGTTGA+AGG 0.404989 3_3:-88456553 None:intergenic
GTAGGAATCAAAGAGGAATT+AGG 0.406036 3_3:+88459710 Msa0482020:three_prime_UTR
AAGTACCTTGCGTGAGTCAT+TGG 0.409730 3_3:-88456573 None:intergenic
GTTAAAATCACATGCGTCTC+AGG 0.410481 3_3:+88452958 Msa0482020:CDS
AGTCTTCCCGTTGGTAGAAA+TGG 0.413730 3_3:+88456766 Msa0482020:three_prime_UTR
AATACTTGCGACAATCGATT+AGG 0.432022 3_3:-88452881 None:intergenic
TCCCTACCATTTCTACCAAC+AGG 0.432057 3_3:-88451707 None:intergenic
GCATTGAGTAAGCTTCCAAC+TGG 0.432756 3_3:+88458147 Msa0482020:three_prime_UTR
CAAAGATTAATATGTGGATC+TGG 0.433208 3_3:+88459595 Msa0482020:three_prime_UTR
GTTAAAGATGTTGCTCAAAC+CGG 0.436945 3_3:+88457687 Msa0482020:three_prime_UTR
AAAATACTTGCTCCTCATAT+CGG 0.437705 3_3:-88459862 None:intergenic
ATCCCTTAGAACCAAGTTTG+TGG 0.438222 3_3:+88456514 Msa0482020:three_prime_UTR
CAAATTGGTTTAAACACAAA+AGG 0.442517 3_3:-88458469 None:intergenic
TACAATGGCTTTAGTCAACT+TGG 0.445382 3_3:-88456857 None:intergenic
TTCGAACCAAATTCGTAGTT+CGG 0.446780 3_3:+88451459 Msa0482020:CDS
AAGAGTAATACCATATATAG+AGG 0.447537 3_3:+88459785 Msa0482020:three_prime_UTR
TCCCTACCATTTCTACCAAC+GGG 0.451381 3_3:-88456772 None:intergenic
GTGAGTCATTGGATTGCATT+TGG 0.453042 3_3:-88456562 None:intergenic
AAGAACCAAATTCGTCTGCT+TGG 0.455339 3_3:+88459816 Msa0482020:three_prime_UTR
AATTCGTCTGCTTGGAAGAC+AGG 0.455469 3_3:+88459824 Msa0482020:three_prime_UTR
GTGAGTCATTGGGTTGACTT+TGG 0.459227 3_3:-88451499 None:intergenic
TGTTTATGTGATCCGATATG+AGG 0.464611 3_3:+88459850 Msa0482020:three_prime_UTR
ATCTAGAAAGTCATGAATAT+AGG 0.466876 3_3:-88457715 None:intergenic
ATAAGAAGATACAAGGAAAT+GGG 0.467633 3_3:-88459678 None:intergenic
GATAGGGAAATTATATTAGT+GGG 0.481882 3_3:+88459738 Msa0482020:three_prime_UTR
AGATAGGGAAATTATATTAG+TGG 0.482836 3_3:+88459737 Msa0482020:three_prime_UTR
CACAACCTTTGATCATCTGC+AGG 0.483883 3_3:-88452584 None:intergenic
TAAGCTTCCCACTGGGGAAG+AGG 0.489767 3_3:+88452634 Msa0482020:CDS
GACTTTCAAAGATTAATATG+TGG 0.491544 3_3:+88459589 Msa0482020:three_prime_UTR
TTTCAATCTCTGAAGTTTGG+TGG 0.495937 3_3:-88459502 None:intergenic
ATTGTCGCAAGTATTATTTG+TGG 0.503131 3_3:+88452889 Msa0482020:CDS
CAAAATGGCTTAAACACAGC+AGG 0.505889 3_3:-88452917 None:intergenic
TGAAGAAAGACGAGGAAGAG+TGG 0.506217 3_3:-88456492 None:intergenic
GAGCATAGATGCGGTGGGTG+TGG 0.511321 3_3:+88456401 Msa0482020:intron
CATAACTTCTCATCGTCCGC+AGG 0.519330 3_3:-88458105 None:intergenic
TCTTCTTATGCCTAGTATGT+AGG 0.521688 3_3:+88459692 Msa0482020:three_prime_UTR
TGAAGAAAGACGAGGAAGAG+TGG 0.522229 3_3:-88451426 None:intergenic
ACTGGGAAAGAACAGATACT+TGG 0.523097 3_3:+88458165 Msa0482020:three_prime_UTR
GTAGTTAATTCTGGAAGTGA+AGG 0.524383 3_3:+88456720 Msa0482020:intron
AGTACTTGAGACAGTCGCTT+CGG 0.526049 3_3:-88458433 None:intergenic
CTCTGCAGAGACGGTGAGGA+AGG 0.526947 3_3:+88459456 Msa0482020:three_prime_UTR
AGAGCTTCGAACCACAAACT+TGG 0.531030 3_3:-88456525 None:intergenic
TCAACCCAATGACTCACAAA+AGG 0.531866 3_3:+88451505 Msa0482020:CDS
GCATTGAGTAAGCTTCCCAC+TGG 0.533695 3_3:+88452626 Msa0482020:CDS
GCTGCGACCACCACAAGCAC+AGG 0.533870 3_3:-88457750 None:intergenic
AAGACTGAATTGAATGGCGC+TGG 0.535827 3_3:+88456448 Msa0482020:exon
AACTACGAATTTGGTTCGAA+GGG 0.536468 3_3:-88451456 None:intergenic
GAAGAGAAGACTGAATTGAA+TGG 0.536940 3_3:+88456442 Msa0482020:exon
AGACGAGGAAGAGTGGTGGT+TGG 0.537822 3_3:-88451419 None:intergenic
AACCACAAACTTGGTTCTAA+GGG 0.538296 3_3:-88456516 None:intergenic
AGTATCTGTTCTTTCCCAGT+TGG 0.541349 3_3:-88458162 None:intergenic
TCCTGTTGGTAGAAATGGTA+GGG 0.541806 3_3:+88451706 Msa0482020:CDS
GAGGAATTAGGCAGGAGATA+GGG 0.542909 3_3:+88459722 Msa0482020:three_prime_UTR
ATCCCTACCATTTCTACCAA+CGG 0.547504 3_3:-88456773 None:intergenic
GAATCAAAGAGGAATTAGGC+AGG 0.556494 3_3:+88459714 Msa0482020:three_prime_UTR
CATTGAGTAAGCTTCCCACT+GGG 0.565906 3_3:+88452627 Msa0482020:CDS
AGTATTTCCTCTTCCCCAGT+GGG 0.572654 3_3:-88452641 None:intergenic
TCCCGTTGGTAGAAATGGTA+GGG 0.573606 3_3:+88456771 Msa0482020:three_prime_UTR
GATGCTACCACCACAAGCAC+AGG 0.574890 3_3:-88452365 None:intergenic
GAACTACGAATTTGGTTCGA+AGG 0.583989 3_3:-88451457 None:intergenic
TGGCTGTTACTATGATTCAG+AGG 0.584726 3_3:+88460021 Msa0482020:three_prime_UTR
AGGACCCTGCAGATGATCAA+AGG 0.591099 3_3:+88452579 Msa0482020:CDS
ACTAGGCATAAGAAGATACA+AGG 0.594414 3_3:-88459685 None:intergenic
CTTGGAATATTTGATCTCAG+AGG 0.594486 3_3:+88458183 Msa0482020:three_prime_UTR
TTCCCGTTGGTAGAAATGGT+AGG 0.597951 3_3:+88456770 Msa0482020:three_prime_UTR
CTTGCAATATTTGATCTGAG+AGG 0.598562 3_3:+88452662 Msa0482020:CDS
TAGTTCTGGAAGTGAAAGAG+AGG 0.601503 3_3:+88451660 Msa0482020:CDS
GAATACTATAGTCTTCCTGT+TGG 0.605263 3_3:+88451692 Msa0482020:CDS
CTATGATTCAGAGGAGTACA+CGG 0.607451 3_3:+88460030 Msa0482020:three_prime_UTR
ACTGTCTCAAGTACTATTTG+CGG 0.613984 3_3:+88458441 Msa0482020:three_prime_UTR
AGAAAGACGAGGAAGAGTGG+TGG 0.617480 3_3:-88451423 None:intergenic
ATAACTTCTCATCGTCCGCA+GGG 0.626723 3_3:-88458104 None:intergenic
CATTGAGTAAGCTTCCAACT+GGG 0.632302 3_3:+88458148 Msa0482020:three_prime_UTR
CAATGACAGACCTGTGCTTG+TGG 0.634407 3_3:+88457740 Msa0482020:three_prime_UTR
AAGTATTTCCTCTTCCCCAG+TGG 0.636610 3_3:-88452642 None:intergenic
GAATACTATAGTCTTCCCGT+TGG 0.641212 3_3:+88456757 Msa0482020:three_prime_UTR
TTCCTGTTGGTAGAAATGGT+AGG 0.641255 3_3:+88451705 Msa0482020:CDS
CAACAACAGACCTGTGCTTG+TGG 0.643089 3_3:+88452355 Msa0482020:CDS
TTTGCTCTGCAGAGACGGTG+AGG 0.644052 3_3:+88459452 Msa0482020:three_prime_UTR
ATGGGATGCCTATACAAGCA+TGG 0.645803 3_3:-88459660 None:intergenic
CTAGTATGTAGGAATCAAAG+AGG 0.658964 3_3:+88459703 Msa0482020:three_prime_UTR
GCAATCCAATGACTCACGCA+AGG 0.664895 3_3:+88456568 Msa0482020:three_prime_UTR
ATGACGAAGATATGATACAA+TGG 0.666407 3_3:+88451729 Msa0482020:CDS
TGACAGACCTGTGCTTGTGG+TGG 0.674493 3_3:+88457743 Msa0482020:three_prime_UTR
ACAACCTTTGATCATCTGCA+GGG 0.675302 3_3:-88452583 None:intergenic
AGAAAGACGAGGAAGAGTGG+TGG 0.678032 3_3:-88456489 None:intergenic
GTCACAGGCACAGGACCCTG+CGG 0.691722 3_3:+88458089 Msa0482020:intron
CTAAGGGATGAAGAAAGACG+AGG 0.703850 3_3:-88456500 None:intergenic
GAAATTGTTGAAGAAAGACG+AGG 0.704895 3_3:-88451434 None:intergenic
CAACAGACCTGTGCTTGTGG+TGG 0.714957 3_3:+88452358 Msa0482020:CDS
ATTGAGTAAGCTTCCCACTG+GGG 0.730583 3_3:+88452628 Msa0482020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAATATTTCTTTATTTT+TGG + chr3_3:88452831-88452850 Msa0482020:intron 10.0%
!!! TAGTTTATTGATTTTATTTT+TGG + chr3_3:88453591-88453610 Msa0482020:intron 10.0%
!! ATGAAAAATTTATTAGATAA+AGG - chr3_3:88454892-88454911 None:intergenic 10.0%
!!! AAATTTTTCATATTTTTGTT+TGG + chr3_3:88454901-88454920 Msa0482020:intron 10.0%
!! TAATAAAAATCAATATTAAC+AGG - chr3_3:88457514-88457533 None:intergenic 10.0%
!! ATAAAATTTATAAACATAGA+GGG - chr3_3:88457591-88457610 None:intergenic 10.0%
!! GATATAAAGTAATTATAAAA+GGG - chr3_3:88457834-88457853 None:intergenic 10.0%
!! TGATATAAAGTAATTATAAA+AGG - chr3_3:88457835-88457854 None:intergenic 10.0%
!! ACCAATATAAATATAAATTT+GGG - chr3_3:88459240-88459259 None:intergenic 10.0%
!! AAATTTATATTTATATTGGT+GGG + chr3_3:88459240-88459259 Msa0482020:intron 10.0%
!! ATATAAATATGATGAAAAGA+AGG - chr3_3:88451819-88451838 None:intergenic 15.0%
!!! AATTTATTAGATAAAGGTTT+TGG - chr3_3:88454886-88454905 None:intergenic 15.0%
!! AATCACTTATTTCAATAAAA+GGG - chr3_3:88455090-88455109 None:intergenic 15.0%
!! AAATCACTTATTTCAATAAA+AGG - chr3_3:88455091-88455110 None:intergenic 15.0%
!!! AAGTATAAATTTTAACTTTG+TGG + chr3_3:88455498-88455517 Msa0482020:intron 15.0%
!!! TTACTTTAATTTATAACGAT+GGG - chr3_3:88455797-88455816 None:intergenic 15.0%
!!! TTTACTTTAATTTATAACGA+TGG - chr3_3:88455798-88455817 None:intergenic 15.0%
!! AGCATTTAAAAATTAAAAGA+AGG + chr3_3:88455976-88455995 Msa0482020:intron 15.0%
!! TATAGGAAAGAAAATAATAA+TGG + chr3_3:88456017-88456036 Msa0482020:intron 15.0%
!! ATAGGAAAGAAAATAATAAT+GGG + chr3_3:88456018-88456037 Msa0482020:intron 15.0%
!! TACATCAAAATTATTATTTG+GGG - chr3_3:88456326-88456345 None:intergenic 15.0%
!! GTACATCAAAATTATTATTT+GGG - chr3_3:88456327-88456346 None:intergenic 15.0%
!!! TAAGTTGAATAATTGTTATT+GGG - chr3_3:88456629-88456648 None:intergenic 15.0%
!! ATGAACATAAATTTATAAGT+GGG + chr3_3:88457296-88457315 Msa0482020:intron 15.0%
!! CATAAAATTTATAAACATAG+AGG - chr3_3:88457592-88457611 None:intergenic 15.0%
!!! AAAATTTTTCAATTTTATGC+AGG + chr3_3:88457944-88457963 Msa0482020:intron 15.0%
!! TTATAATTAATAATTTCTCC+TGG + chr3_3:88457975-88457994 Msa0482020:intron 15.0%
!! TATAATTAATAATTTCTCCT+GGG + chr3_3:88457976-88457995 Msa0482020:intron 15.0%
!! TATTAGTATATATTATGCTA+AGG + chr3_3:88459157-88459176 Msa0482020:intron 15.0%
!! ATTAGTATATATTATGCTAA+GGG + chr3_3:88459158-88459177 Msa0482020:intron 15.0%
!! TCCCAAATTTATATTTATAT+TGG + chr3_3:88459236-88459255 Msa0482020:intron 15.0%
!! CACCAATATAAATATAAATT+TGG - chr3_3:88459241-88459260 None:intergenic 15.0%
!! CAAATTTATATTTATATTGG+TGG + chr3_3:88459239-88459258 Msa0482020:intron 15.0%
!! AATTTATATTTATATTGGTG+GGG + chr3_3:88459241-88459260 Msa0482020:intron 15.0%
!!! GTAAGTTGAATAATTGTTTT+TGG - chr3_3:88451576-88451595 None:intergenic 20.0%
!! TAAATATGATCAAATGTTTC+CGG - chr3_3:88452024-88452043 None:intergenic 20.0%
!! ACATTCTACTTTATTAGAAA+TGG + chr3_3:88452240-88452259 Msa0482020:intron 20.0%
!!! AATTTAAAATCAGCATTTTC+CGG - chr3_3:88452695-88452714 None:intergenic 20.0%
!!! AAATGCTGATTTTAAATTCT+TGG + chr3_3:88452697-88452716 Msa0482020:CDS 20.0%
!!! TTTTATTTCAAGCAATATCA+GGG - chr3_3:88452788-88452807 None:intergenic 20.0%
!!! ATTCTTATCACATTTTGAAT+CGG + chr3_3:88453195-88453214 Msa0482020:intron 20.0%
!! TAAAACTTAAAGAAACTCTT+GGG - chr3_3:88453821-88453840 None:intergenic 20.0%
!! ATAAAACTTAAAGAAACTCT+TGG - chr3_3:88453822-88453841 None:intergenic 20.0%
!!! TTCATATTTTTGTTTGGTAT+CGG + chr3_3:88454907-88454926 Msa0482020:intron 20.0%
!!! AAGGAATAAATTTTAACATC+TGG + chr3_3:88454937-88454956 Msa0482020:intron 20.0%
!!! AGGAATAAATTTTAACATCT+GGG + chr3_3:88454938-88454957 Msa0482020:intron 20.0%
!! GATGAATAAGAATAAAACTA+GGG - chr3_3:88454999-88455018 None:intergenic 20.0%
!! TATTTCAATAAAAGGGAAAA+AGG - chr3_3:88455083-88455102 None:intergenic 20.0%
!!! CAAATTTGCTAAAAACAAAA+AGG - chr3_3:88455411-88455430 None:intergenic 20.0%
!! TAAAGTAAAATGTAGTACTT+TGG + chr3_3:88455809-88455828 Msa0482020:intron 20.0%
!! TAGGAAAGAAAATAATAATG+GGG + chr3_3:88456019-88456038 Msa0482020:intron 20.0%
!! GGTACATCAAAATTATTATT+TGG - chr3_3:88456328-88456347 None:intergenic 20.0%
!!! TAGTTTAAAACCTTTTTTAG+AGG - chr3_3:88456349-88456368 None:intergenic 20.0%
!!! AAATCCAAATGATGATTTTA+AGG - chr3_3:88456379-88456398 None:intergenic 20.0%
!!! TAAAATCATCATTTGGATTT+TGG + chr3_3:88456379-88456398 Msa0482020:intron 20.0%
!!! GTAAGTTGAATAATTGTTAT+TGG - chr3_3:88456630-88456649 None:intergenic 20.0%
!!! TGATATTTTGTAGTTAATTC+TGG + chr3_3:88456711-88456730 Msa0482020:intron 20.0%
!! ATGATGAAGATATGATATTA+TGG + chr3_3:88456794-88456813 Msa0482020:three_prime_UTR 20.0%
!! TAAATATACATCTATAAGTG+AGG + chr3_3:88457099-88457118 Msa0482020:intron 20.0%
!! AAATATACATCTATAAGTGA+GGG + chr3_3:88457100-88457119 Msa0482020:intron 20.0%
!! CATGAACATAAATTTATAAG+TGG + chr3_3:88457295-88457314 Msa0482020:intron 20.0%
!! TGAACATAAATTTATAAGTG+GGG + chr3_3:88457297-88457316 Msa0482020:intron 20.0%
!! GGACACAAATATTAAAATTT+GGG - chr3_3:88457371-88457390 None:intergenic 20.0%
!! TGGACACAAATATTAAAATT+TGG - chr3_3:88457372-88457391 None:intergenic 20.0%
!! TATATTCTCTTTGATTGTTT+CGG - chr3_3:88457875-88457894 None:intergenic 20.0%
!! AATCAAAGAGAATATAAATG+TGG + chr3_3:88457879-88457898 Msa0482020:intron 20.0%
!! TGTCATAGATCTTAAATTTA+AGG + chr3_3:88458033-88458052 Msa0482020:intron 20.0%
!! GTCATAGATCTTAAATTTAA+GGG + chr3_3:88458034-88458053 Msa0482020:intron 20.0%
!!! GAGTTCTAACTATAAATATT+TGG - chr3_3:88458272-88458291 None:intergenic 20.0%
!!! TTTTCTATATAAGAGAAAAC+AGG + chr3_3:88458561-88458580 Msa0482020:intron 20.0%
!! ATTTATATTTATATTGGTGG+GGG + chr3_3:88459242-88459261 Msa0482020:intron 20.0%
!! CCTGTAAAAGAAAATAAAAA+TGG - chr3_3:88459426-88459445 None:intergenic 20.0%
!!! CCATTTTTATTTTCTTTTAC+AGG + chr3_3:88459423-88459442 Msa0482020:intron 20.0%
!! TATATGGTATTACTCTTAAA+AGG - chr3_3:88453479-88453498 None:intergenic 20.0%
!!! TTTCAGTTTATTGCTTTTTT+AGG + chr3_3:88459882-88459901 Msa0482020:three_prime_UTR 20.0%
!!! TTCAGTTTATTGCTTTTTTA+GGG + chr3_3:88459883-88459902 Msa0482020:three_prime_UTR 20.0%
! GGTTATCATATTATTGTTGT+TGG + chr3_3:88452109-88452128 Msa0482020:intron 25.0%
! ATAAAATTTGCAAACATGGA+GGG - chr3_3:88452203-88452222 None:intergenic 25.0%
! GTACATAAAATTTGCAAACA+TGG - chr3_3:88452207-88452226 None:intergenic 25.0%
! ACAAAATCTACACTTACTTT+AGG - chr3_3:88452401-88452420 None:intergenic 25.0%
! AAGATATTAAGTCTTTCAGT+AGG + chr3_3:88452465-88452484 Msa0482020:intron 25.0%
! TATATTCATCCTGATTGTAA+TGG - chr3_3:88452545-88452564 None:intergenic 25.0%
!! TTTTAAATTCTTGGCATTCT+TGG + chr3_3:88452706-88452725 Msa0482020:CDS 25.0%
!!! CTTTTATTTCAAGCAATATC+AGG - chr3_3:88452789-88452808 None:intergenic 25.0%
! ATACTATAAACAGACAATAC+TGG - chr3_3:88453029-88453048 None:intergenic 25.0%
! GTATGAATCATAAAAATGTC+AGG - chr3_3:88453166-88453185 None:intergenic 25.0%
! ATGTGATAAGAATGTTATAG+AGG - chr3_3:88453188-88453207 None:intergenic 25.0%
!! TTCTTATCACATTTTGAATC+GGG + chr3_3:88453196-88453215 Msa0482020:intron 25.0%
! CCTGTAAAAGAAAATGAAAA+TGG - chr3_3:88453278-88453297 None:intergenic 25.0%
!! CCATTTTCATTTTCTTTTAC+AGG + chr3_3:88453275-88453294 Msa0482020:intron 25.0%
!!! CAGAGATTGAAAGTTATTTT+TGG + chr3_3:88453362-88453381 Msa0482020:intron 25.0%
! AGATAAGGGAATCATATTAT+TGG + chr3_3:88453434-88453453 Msa0482020:intron 25.0%
! GATAAGGGAATCATATTATT+GGG + chr3_3:88453435-88453454 Msa0482020:intron 25.0%
! TTAAGAGTAATACCATATAG+AGG + chr3_3:88453480-88453499 Msa0482020:intron 25.0%
! AAAACTTAAAGAAACTCTTG+GGG - chr3_3:88453973-88453992 None:intergenic 25.0%
! GTTCTGATTCAAAGAAAATA+TGG + chr3_3:88454258-88454277 Msa0482020:intron 25.0%
! AGTAATTGACCAATTCTATA+AGG - chr3_3:88454337-88454356 None:intergenic 25.0%
! AATTGGTCAATTACTTGATA+AGG + chr3_3:88454342-88454361 Msa0482020:intron 25.0%
! ATTGGTCAATTACTTGATAA+GGG + chr3_3:88454343-88454362 Msa0482020:intron 25.0%
! CAAAGTATACTTCATTACAT+GGG - chr3_3:88454523-88454542 None:intergenic 25.0%
! TCAAAGTATACTTCATTACA+TGG - chr3_3:88454524-88454543 None:intergenic 25.0%
! TGTAATGAAGTATACTTTGA+TGG + chr3_3:88454524-88454543 Msa0482020:intron 25.0%
!!! ATTTTTTGTAGATACTGAAC+AGG + chr3_3:88454565-88454584 Msa0482020:intron 25.0%
! TCAATTGAGAAAATCAAACA+TGG + chr3_3:88454650-88454669 Msa0482020:intron 25.0%
! CAATTGAGAAAATCAAACAT+GGG + chr3_3:88454651-88454670 Msa0482020:intron 25.0%
! TCTATTTCAATTGCACATAA+AGG + chr3_3:88454806-88454825 Msa0482020:intron 25.0%
!!! TCATATTTTTGTTTGGTATC+GGG + chr3_3:88454908-88454927 Msa0482020:intron 25.0%
!! TAAGAATAAAACTAGGGTTT+TGG - chr3_3:88454993-88455012 None:intergenic 25.0%
! GGATGAATAAGAATAAAACT+AGG - chr3_3:88455000-88455019 None:intergenic 25.0%
! TATGACTATATTCAAATCTC+CGG - chr3_3:88455319-88455338 None:intergenic 25.0%
! TTGAATATAGTCATATGTGT+AGG + chr3_3:88455324-88455343 Msa0482020:intron 25.0%
! ATCCATGTTAATAGCATAAA+CGG - chr3_3:88455363-88455382 None:intergenic 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr3_3:88455689-88455708 None:intergenic 25.0%
! AGTGTGCATAGTAATAATTA+TGG + chr3_3:88455836-88455855 Msa0482020:intron 25.0%
! GTGTGCATAGTAATAATTAT+GGG + chr3_3:88455837-88455856 Msa0482020:intron 25.0%
! TGTGCATAGTAATAATTATG+GGG + chr3_3:88455838-88455857 Msa0482020:intron 25.0%
!!! TTTTGATGTACCTCTAAAAA+AGG + chr3_3:88456336-88456355 Msa0482020:intron 25.0%
!! GAATAATTGTTATTGGGATA+TGG - chr3_3:88456623-88456642 None:intergenic 25.0%
! AAACTCTCTTAACATCTAAA+AGG + chr3_3:88456656-88456675 Msa0482020:intron 25.0%
! AACTCTCTTAACATCTAAAA+GGG + chr3_3:88456657-88456676 Msa0482020:intron 25.0%
!! ATTTAGAGTTTGCTTTATTG+AGG + chr3_3:88456934-88456953 Msa0482020:intron 25.0%
! GAACATAAATTTATAAGTGG+GGG + chr3_3:88457298-88457317 Msa0482020:intron 25.0%
!!! ATCTTATAAGTTGGTATTGT+AGG + chr3_3:88457329-88457348 Msa0482020:intron 25.0%
!!! TCTTATAAGTTGGTATTGTA+GGG + chr3_3:88457330-88457349 Msa0482020:intron 25.0%
! ATGAAAGTAATCAAATGTGT+CGG - chr3_3:88457415-88457434 None:intergenic 25.0%
! CCATTTCTAATAATGTAGAA+GGG - chr3_3:88457628-88457647 None:intergenic 25.0%
! AACATCTTTAACAGATTCTT+CGG - chr3_3:88457679-88457698 None:intergenic 25.0%
! ATCTAGAAAGTCATGAATAT+AGG - chr3_3:88457718-88457737 None:intergenic 25.0%
! CACATAAATAATTATGTCAC+AGG + chr3_3:88458074-88458093 Msa0482020:intron 25.0%
!! ATGTGTTTTCTTAATTGAGA+AGG + chr3_3:88458125-88458144 Msa0482020:three_prime_UTR 25.0%
! TCTTAAATACTTAACGTTCT+TGG + chr3_3:88458227-88458246 Msa0482020:three_prime_UTR 25.0%
! TATTTATAGTTAGAACTCCA+CGG + chr3_3:88458274-88458293 Msa0482020:intron 25.0%
! CTAACATGTTTCTTTACTTT+GGG + chr3_3:88458383-88458402 Msa0482020:intron 25.0%
!! CAAATTGGTTTAAACACAAA+AGG - chr3_3:88458472-88458491 None:intergenic 25.0%
!! CTTTTGTGTTTAAACCAATT+TGG + chr3_3:88458470-88458489 Msa0482020:three_prime_UTR 25.0%
!!! GAAGCATATGATTTTAACAT+CGG - chr3_3:88458508-88458527 None:intergenic 25.0%
! AAAGTCAAACATAACAAGTA+GGG - chr3_3:88458670-88458689 None:intergenic 25.0%
! AAAAGTCAAACATAACAAGT+AGG - chr3_3:88458671-88458690 None:intergenic 25.0%
! TTGTTTGATGAAGTTATTCA+TGG + chr3_3:88458752-88458771 Msa0482020:intron 25.0%
! TTTATATTTATATTGGTGGG+GGG + chr3_3:88459243-88459262 Msa0482020:intron 25.0%
! AAAAAGATTGGAGTGATATA+AGG - chr3_3:88459282-88459301 None:intergenic 25.0%
!!! CAGAGATTGAAAGTTATTTT+TGG + chr3_3:88453362-88453381 Msa0482020:intron 25.0%
! GACTTTCAAAGATTAATATG+TGG + chr3_3:88459589-88459608 Msa0482020:three_prime_UTR 25.0%
! ATAAGAAGATACAAGGAAAT+GGG - chr3_3:88459681-88459700 None:intergenic 25.0%
! AGATAGGGAAATTATATTAG+TGG + chr3_3:88459737-88459756 Msa0482020:three_prime_UTR 25.0%
! GATAGGGAAATTATATTAGT+GGG + chr3_3:88459738-88459757 Msa0482020:three_prime_UTR 25.0%
! AAGAGTAATACCATATATAG+AGG + chr3_3:88459785-88459804 Msa0482020:three_prime_UTR 25.0%
! TTCAATATTGCCTCTATATA+TGG - chr3_3:88459798-88459817 None:intergenic 25.0%
! GAAAATTTTGCAGTTAGTTC+TGG + chr3_3:88451646-88451665 Msa0482020:intron 30.0%
ATGACGAAGATATGATACAA+TGG + chr3_3:88451729-88451748 Msa0482020:CDS 30.0%
TGATAATTGGGAACAAGAAA+AGG - chr3_3:88452162-88452181 None:intergenic 30.0%
TGCTTAAGTAGGTGATAATT+GGG - chr3_3:88452174-88452193 None:intergenic 30.0%
TTGCTTAAGTAGGTGATAAT+TGG - chr3_3:88452175-88452194 None:intergenic 30.0%
CATAAAATTTGCAAACATGG+AGG - chr3_3:88452204-88452223 None:intergenic 30.0%
AGTTTGAGAGATATCTTTGA+TGG - chr3_3:88452303-88452322 None:intergenic 30.0%
! GTGTGTTTTCTTAATTGAGA+AGG + chr3_3:88452604-88452623 Msa0482020:CDS 30.0%
! ATATTTGATCTGAGAGGTTT+TGG + chr3_3:88452668-88452687 Msa0482020:CDS 30.0%
ATTGTCGCAAGTATTATTTG+TGG + chr3_3:88452889-88452908 Msa0482020:CDS 30.0%
TGTCTGTTTATAGTATGCTA+AGG + chr3_3:88453033-88453052 Msa0482020:intron 30.0%
GTCTGTTTATAGTATGCTAA+GGG + chr3_3:88453034-88453053 Msa0482020:intron 30.0%
CACCAATGTAACACATTAAT+CGG - chr3_3:88453130-88453149 None:intergenic 30.0%
GATTAATGTGTTACATTGGT+GGG + chr3_3:88453129-88453148 Msa0482020:intron 30.0%
CAAAAATCAAACGATCATGT+AGG + chr3_3:88453221-88453240 Msa0482020:intron 30.0%
!! AACTTTCAATCTCTGAAGTT+TGG - chr3_3:88453357-88453376 None:intergenic 30.0%
TATGAAAATTGCTGTCATTG+AGG + chr3_3:88453389-88453408 Msa0482020:intron 30.0%
ATACCATATAGAGGCAATAT+TGG + chr3_3:88453489-88453508 Msa0482020:intron 30.0%
AAATACCTCTTGTATAAGTG+TGG + chr3_3:88453638-88453657 Msa0482020:intron 30.0%
TGTATAAGTGTGGTACAAAA+TGG + chr3_3:88453648-88453667 Msa0482020:intron 30.0%
GTTATACATTGAATACACAC+TGG - chr3_3:88453699-88453718 None:intergenic 30.0%
ACTCAATTGGATCAATTTAG+GGG - chr3_3:88453845-88453864 None:intergenic 30.0%
CACTCAATTGGATCAATTTA+GGG - chr3_3:88453846-88453865 None:intergenic 30.0%
TCACTCAATTGGATCAATTT+AGG - chr3_3:88453847-88453866 None:intergenic 30.0%
AACAGTGATATCAGAGTTAT+TGG + chr3_3:88453912-88453931 Msa0482020:intron 30.0%
AAACTTAAAGAAACTCTTGG+GGG - chr3_3:88453972-88453991 None:intergenic 30.0%
!! TCAGAAGTATTGTTTGTTCT+TGG + chr3_3:88454299-88454318 Msa0482020:intron 30.0%
!! CAGAAGTATTGTTTGTTCTT+GGG + chr3_3:88454300-88454319 Msa0482020:intron 30.0%
AAACAACTCAAAGTGTATGA+TGG + chr3_3:88454388-88454407 Msa0482020:intron 30.0%
ACCTATGCCAATAAGAAATT+AGG + chr3_3:88454435-88454454 Msa0482020:intron 30.0%
CCTATGCCAATAAGAAATTA+GGG + chr3_3:88454436-88454455 Msa0482020:intron 30.0%
ATAGCTCCCTAATTTCTTAT+TGG - chr3_3:88454445-88454464 None:intergenic 30.0%
TTAAGTCTTGCCTTGTATTT+GGG - chr3_3:88454760-88454779 None:intergenic 30.0%
TTTAAGTCTTGCCTTGTATT+TGG - chr3_3:88454761-88454780 None:intergenic 30.0%
AATACAAGGCAAGACTTAAA+AGG + chr3_3:88454761-88454780 Msa0482020:intron 30.0%
CAAGACTTAAAAGGTCATAT+CGG + chr3_3:88454770-88454789 Msa0482020:intron 30.0%
TTCTTATTCATCCAACAAAG+AGG + chr3_3:88455007-88455026 Msa0482020:intron 30.0%
TCTTATTCATCCAACAAAGA+GGG + chr3_3:88455008-88455027 Msa0482020:intron 30.0%
AAAAAGGAAAACGAGTTAGA+GGG - chr3_3:88455067-88455086 None:intergenic 30.0%
! AACTTTGTGGTAAGTCTTAT+TGG + chr3_3:88455511-88455530 Msa0482020:intron 30.0%
! GTTTTTCTTAACTGTTCTCA+GGG - chr3_3:88455607-88455626 None:intergenic 30.0%
AAATAGCCTTTGTTAACTAC+TGG + chr3_3:88455764-88455783 Msa0482020:intron 30.0%
!! TAATAATTATGGGGTACTGT+TGG + chr3_3:88455847-88455866 Msa0482020:intron 30.0%
!! AATAATTATGGGGTACTGTT+GGG + chr3_3:88455848-88455867 Msa0482020:intron 30.0%
AATAGTGCATTGAAAACTGA+AGG + chr3_3:88455882-88455901 Msa0482020:intron 30.0%
!!! AAACGACGCTTATTTTGAAA+AGG + chr3_3:88455938-88455957 Msa0482020:intron 30.0%
ACGACCTTAAAATCATCATT+TGG + chr3_3:88456372-88456391 Msa0482020:intron 30.0%
AGACACTTAACAACAAACAT+TGG - chr3_3:88457058-88457077 None:intergenic 30.0%
CTAACTCAACCAAACAATAT+CGG - chr3_3:88457144-88457163 None:intergenic 30.0%
! ACCATGATAAAGTTTGAGTT+GGG - chr3_3:88457168-88457187 None:intergenic 30.0%
TACCATGATAAAGTTTGAGT+TGG - chr3_3:88457169-88457188 None:intergenic 30.0%
AAAGACTATTCAAGATCCAT+TGG + chr3_3:88457191-88457210 Msa0482020:intron 30.0%
AAGACTATTCAAGATCCATT+GGG + chr3_3:88457192-88457211 Msa0482020:intron 30.0%
CAATACCAACTTATAAGATG+AGG - chr3_3:88457328-88457347 None:intergenic 30.0%
TATAACCGATCTCTATGTAT+CGG + chr3_3:88457442-88457461 Msa0482020:intron 30.0%
ATTTATAAACATAGAGGGTC+TGG - chr3_3:88457586-88457605 None:intergenic 30.0%
CCCTTCTACATTATTAGAAA+TGG + chr3_3:88457625-88457644 Msa0482020:intron 30.0%
GCCATTTCTAATAATGTAGA+AGG - chr3_3:88457629-88457648 None:intergenic 30.0%
TTTCCTAAAGTAAGTGTAGA+AGG + chr3_3:88452395-88452414 Msa0482020:intron 30.0%
TAACCTTCTACACTTACTTT+AGG - chr3_3:88457786-88457805 None:intergenic 30.0%
ATGAAACCAAAACTTTCTCT+AGG + chr3_3:88457910-88457929 Msa0482020:intron 30.0%
! ATATTTGATCTCAGAGGTTT+TGG + chr3_3:88458189-88458208 Msa0482020:three_prime_UTR 30.0%
ATTACCTTGCTGGAAATAAA+TGG + chr3_3:88458333-88458352 Msa0482020:intron 30.0%
CCAAAGTAAAGAAACATGTT+AGG - chr3_3:88458385-88458404 None:intergenic 30.0%
CCTAACATGTTTCTTTACTT+TGG + chr3_3:88458382-88458401 Msa0482020:intron 30.0%
!! ATATGATTTTAACATCGGCT+TGG - chr3_3:88458503-88458522 None:intergenic 30.0%
GTTAAAATCATATGCTTCTC+TGG + chr3_3:88458510-88458529 Msa0482020:three_prime_UTR 30.0%
! GACTTTTGCGTTTTTAATCA+TGG + chr3_3:88458684-88458703 Msa0482020:intron 30.0%
CAAGTATACTCAAGATATTG+AGG + chr3_3:88458712-88458731 Msa0482020:intron 30.0%
AGATATTGAGGTTGTTAAGA+TGG + chr3_3:88458724-88458743 Msa0482020:intron 30.0%
AGTATATATTATGCTAAGGG+TGG + chr3_3:88459161-88459180 Msa0482020:intron 30.0%
GTATATATTATGCTAAGGGT+GGG + chr3_3:88459162-88459181 Msa0482020:intron 30.0%
TATATATTATGCTAAGGGTG+GGG + chr3_3:88459163-88459182 Msa0482020:intron 30.0%
GGGATATAAAGTTAACTTAG+TGG - chr3_3:88459220-88459239 None:intergenic 30.0%
! TCACCTTATAACTCCTATTT+TGG + chr3_3:88459324-88459343 Msa0482020:intron 30.0%
ATGCCAAAATAGGAGTTATA+AGG - chr3_3:88459330-88459349 None:intergenic 30.0%
CAACAATCTTATGCCAAAAT+AGG - chr3_3:88459340-88459359 None:intergenic 30.0%
!!! CTATTTTGGCATAAGATTGT+TGG + chr3_3:88459338-88459357 Msa0482020:intron 30.0%
!! AACTTTCAATCTCTGAAGTT+TGG - chr3_3:88453357-88453376 None:intergenic 30.0%
! AGACTGTTTTGCATTTATCT+TGG + chr3_3:88459567-88459586 Msa0482020:three_prime_UTR 30.0%
CAAAGATTAATATGTGGATC+TGG + chr3_3:88459595-88459614 Msa0482020:three_prime_UTR 30.0%
! CAACTCATAAGAATTTTGAG+AGG + chr3_3:88459624-88459643 Msa0482020:three_prime_UTR 30.0%
CATAAGAAGATACAAGGAAA+TGG - chr3_3:88459682-88459701 None:intergenic 30.0%
AAAATACTTGCTCCTCATAT+CGG - chr3_3:88459865-88459884 None:intergenic 30.0%
AACAGTATCTCTTGTATAAC+TGG + chr3_3:88459928-88459947 Msa0482020:three_prime_UTR 30.0%
GAAATTGTTGAAGAAAGACG+AGG - chr3_3:88451437-88451456 None:intergenic 35.0%
! AACTACGAATTTGGTTCGAA+GGG - chr3_3:88451459-88451478 None:intergenic 35.0%
TTCGAACCAAATTCGTAGTT+CGG + chr3_3:88451459-88451478 Msa0482020:CDS 35.0%
! AGAACCTTTTGTGAGTCATT+GGG - chr3_3:88451512-88451531 None:intergenic 35.0%
! AAGAACCTTTTGTGAGTCAT+TGG - chr3_3:88451513-88451532 None:intergenic 35.0%
GAATACTATAGTCTTCCTGT+TGG + chr3_3:88451692-88451711 Msa0482020:CDS 35.0%
TAATTGGGAACAAGAAAAGG+TGG - chr3_3:88452159-88452178 None:intergenic 35.0%
TGAACATGTCCATTACAATC+AGG + chr3_3:88452533-88452552 Msa0482020:intron 35.0%
AGGATGAATATATATGCCAC+AGG + chr3_3:88452553-88452572 Msa0482020:intron 35.0%
AATATATATGCCACAGGAAC+AGG + chr3_3:88452559-88452578 Msa0482020:intron 35.0%
CTTGCAATATTTGATCTGAG+AGG + chr3_3:88452662-88452681 Msa0482020:CDS 35.0%
AATACTTGCGACAATCGATT+AGG - chr3_3:88452884-88452903 None:intergenic 35.0%
TGTTTATAGTATGCTAAGGG+TGG + chr3_3:88453037-88453056 Msa0482020:intron 35.0%
GTGAAGTAATAAAGAGATCG+AGG - chr3_3:88453072-88453091 None:intergenic 35.0%
CTCCGATTAATGTGTTACAT+TGG + chr3_3:88453125-88453144 Msa0482020:intron 35.0%
CGATTAATGTGTTACATTGG+TGG + chr3_3:88453128-88453147 Msa0482020:intron 35.0%
!! TTTCAATCTCTGAAGTTTGG+TGG - chr3_3:88453354-88453373 None:intergenic 35.0%
GAGGAATCAAAGAAGAACTA+TGG + chr3_3:88453408-88453427 Msa0482020:intron 35.0%
GAATCAAAGAAGAACTATGG+TGG + chr3_3:88453411-88453430 Msa0482020:intron 35.0%
! AAGAACTATGGTGGAGATAA+GGG + chr3_3:88453420-88453439 Msa0482020:intron 35.0%
TCTCCAATATTGCCTCTATA+TGG - chr3_3:88453495-88453514 None:intergenic 35.0%
TTGTACCACACTTATACAAG+AGG - chr3_3:88453646-88453665 None:intergenic 35.0%
TCACTCAATTGGATCAACTT+AGG - chr3_3:88454000-88454019 None:intergenic 35.0%
TTGGAGTTAGGTCAAATTTG+TGG + chr3_3:88454096-88454115 Msa0482020:intron 35.0%
! ACAAATTTTCCTTCCAGTCA+TGG - chr3_3:88454155-88454174 None:intergenic 35.0%
! TCACTTACTGAAGAAAGTGT+TGG + chr3_3:88454231-88454250 Msa0482020:intron 35.0%
GAAGTGTGACCTTATAGAAT+TGG + chr3_3:88454325-88454344 Msa0482020:intron 35.0%
CCCTAATTTCTTATTGGCAT+AGG - chr3_3:88454439-88454458 None:intergenic 35.0%
!! AAGGTGGATTAATGCTATGA+AGG + chr3_3:88454616-88454635 Msa0482020:intron 35.0%
! AGAAAGTGATTTGTGTGAAG+TGG + chr3_3:88454698-88454717 Msa0482020:intron 35.0%
!! TAAAACTAGGGTTTTGGTGA+CGG - chr3_3:88454987-88455006 None:intergenic 35.0%
CTTATTCATCCAACAAAGAG+GGG + chr3_3:88455009-88455028 Msa0482020:intron 35.0%
AAAAGGAAAACGAGTTAGAG+GGG - chr3_3:88455066-88455085 None:intergenic 35.0%
GAAAAAGGAAAACGAGTTAG+AGG - chr3_3:88455068-88455087 None:intergenic 35.0%
! TTGTCTTTCTTGTTTCTCTC+AGG + chr3_3:88455193-88455212 Msa0482020:intron 35.0%
GTTTCTCTCAGGTATTTGAT+CGG + chr3_3:88455204-88455223 Msa0482020:intron 35.0%
ATGACGCAAAAGTCATTGAT+TGG - chr3_3:88455266-88455285 None:intergenic 35.0%
! TGCCGTTTATGCTATTAACA+TGG + chr3_3:88455358-88455377 Msa0482020:intron 35.0%
TGAATTTGTGAACAGACTCA+CGG - chr3_3:88455387-88455406 None:intergenic 35.0%
! CATCCAACCTCTAATTTTGA+CGG + chr3_3:88455574-88455593 Msa0482020:intron 35.0%
AAAATGGCCGTCAAAATTAG+AGG - chr3_3:88455584-88455603 None:intergenic 35.0%
TTAACTGTTCTCAGGGAAAA+TGG - chr3_3:88455600-88455619 None:intergenic 35.0%
! CGTTTTTCTTAACTGTTCTC+AGG - chr3_3:88455608-88455627 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+AGG - chr3_3:88455685-88455704 None:intergenic 35.0%
AATGCACCAGTAGTTAACAA+AGG - chr3_3:88455773-88455792 None:intergenic 35.0%
!!! GACGCTTATTTTGAAAAGGA+GGG + chr3_3:88455942-88455961 Msa0482020:intron 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG + chr3_3:88456045-88456064 Msa0482020:intron 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG + chr3_3:88456046-88456065 Msa0482020:intron 35.0%
TTGCAATTTCTCTGCATTCA+GGG - chr3_3:88456092-88456111 None:intergenic 35.0%
TTTGCAATTTCTCTGCATTC+AGG - chr3_3:88456093-88456112 None:intergenic 35.0%
AGAAATTGCAAAAAAGTCCC+TGG + chr3_3:88456101-88456120 Msa0482020:intron 35.0%
ACTAACAGAGTTTACATCCA+GGG - chr3_3:88456121-88456140 None:intergenic 35.0%
TCAGGGACTAAATTGACTAA+CGG - chr3_3:88456168-88456187 None:intergenic 35.0%
ACTAACGAAGTCTACATTCA+GGG - chr3_3:88456185-88456204 None:intergenic 35.0%
GACTCTGTTACTCAATTTCA+GGG - chr3_3:88456217-88456236 None:intergenic 35.0%
AGACTCTGTTACTCAATTTC+AGG - chr3_3:88456218-88456237 None:intergenic 35.0%
TTTGCAATTTCTCTGCAATC+AGG + chr3_3:88456252-88456271 Msa0482020:intron 35.0%
TTGCAATTTCTCTGCAATCA+GGG + chr3_3:88456253-88456272 Msa0482020:intron 35.0%
GAAGAGAAGACTGAATTGAA+TGG + chr3_3:88456442-88456461 Msa0482020:exon 35.0%
!! AACCACAAACTTGGTTCTAA+GGG - chr3_3:88456519-88456538 None:intergenic 35.0%
! GTAGTTAATTCTGGAAGTGA+AGG + chr3_3:88456720-88456739 Msa0482020:intron 35.0%
!! TACAATGGCTTTAGTCAACT+TGG - chr3_3:88456860-88456879 None:intergenic 35.0%
TGATGAGAAGAAGGATACAA+TGG - chr3_3:88456875-88456894 None:intergenic 35.0%
! TAGAGTTTGCTTTATTGAGG+AGG + chr3_3:88456937-88456956 Msa0482020:intron 35.0%
ACTGGGAAATGAGTGAAAAT+TGG + chr3_3:88456964-88456983 Msa0482020:intron 35.0%
!!! GCATCAATTTTTAAGACCGA+AGG + chr3_3:88457027-88457046 Msa0482020:intron 35.0%
TGTTGTTAAGTGTCTCACTT+TGG + chr3_3:88457063-88457082 Msa0482020:intron 35.0%
ACCCAACTCAAACTTTATCA+TGG + chr3_3:88457164-88457183 Msa0482020:intron 35.0%
GCAATCCTCATCTTATAAGT+TGG + chr3_3:88457320-88457339 Msa0482020:intron 35.0%
TGTAGTGTAACTCGTGTTAA+TGG - chr3_3:88457392-88457411 None:intergenic 35.0%
ACATAGAGATCGGTTATACA+AGG - chr3_3:88457440-88457459 None:intergenic 35.0%
ACATACCGATACATAGAGAT+CGG - chr3_3:88457450-88457469 None:intergenic 35.0%
GTTAAAGATGTTGCTCAAAC+CGG + chr3_3:88457687-88457706 Msa0482020:three_prime_UTR 35.0%
! GTCATGAATATAGGCTTTTC+CGG - chr3_3:88457709-88457728 None:intergenic 35.0%
! CCTTTACCTAGAGAAAGTTT+TGG - chr3_3:88457919-88457938 None:intergenic 35.0%
CCAAAACTTTCTCTAGGTAA+AGG + chr3_3:88457916-88457935 Msa0482020:intron 35.0%
TTAAGATCTATGACACACAC+TGG - chr3_3:88458028-88458047 None:intergenic 35.0%
AATAATTATGTCACAGGCAC+AGG + chr3_3:88458080-88458099 Msa0482020:intron 35.0%
CTTGGAATATTTGATCTCAG+AGG + chr3_3:88458183-88458202 Msa0482020:three_prime_UTR 35.0%
ACTGTCTCAAGTACTATTTG+CGG + chr3_3:88458441-88458460 Msa0482020:three_prime_UTR 35.0%
AAGTGTGGCTTATATATGTC+TGG + chr3_3:88458603-88458622 Msa0482020:intron 35.0%
! TTGCGTTTTTAATCATGGCA+TGG + chr3_3:88458689-88458708 Msa0482020:intron 35.0%
TATTCAAATCGAGACGTCAT+TGG + chr3_3:88458779-88458798 Msa0482020:intron 35.0%
ATTCAAATCGAGACGTCATT+GGG + chr3_3:88458780-88458799 Msa0482020:intron 35.0%
AATTCACAAGGTGAATGGTA+TGG - chr3_3:88458866-88458885 None:intergenic 35.0%
ACTTGAACCTCAAATTCACA+AGG - chr3_3:88458878-88458897 None:intergenic 35.0%
!! TAAGGTGAATGAGTTGGTTT+GGG - chr3_3:88459312-88459331 None:intergenic 35.0%
!! ATAAGGTGAATGAGTTGGTT+TGG - chr3_3:88459313-88459332 None:intergenic 35.0%
GAGTTATAAGGTGAATGAGT+TGG - chr3_3:88459318-88459337 None:intergenic 35.0%
! ATTTTCAGCACTGTTTGACA+TGG + chr3_3:88459395-88459414 Msa0482020:intron 35.0%
!! TTTCAATCTCTGAAGTTTGG+TGG - chr3_3:88453354-88453373 None:intergenic 35.0%
TTGAAGAACCATGCTTGTAT+AGG + chr3_3:88459652-88459671 Msa0482020:three_prime_UTR 35.0%
ACTAGGCATAAGAAGATACA+AGG - chr3_3:88459688-88459707 None:intergenic 35.0%
TCTTCTTATGCCTAGTATGT+AGG + chr3_3:88459692-88459711 Msa0482020:three_prime_UTR 35.0%
CTCTTTGATTCCTACATACT+AGG - chr3_3:88459705-88459724 None:intergenic 35.0%
CTAGTATGTAGGAATCAAAG+AGG + chr3_3:88459703-88459722 Msa0482020:three_prime_UTR 35.0%
GTAGGAATCAAAGAGGAATT+AGG + chr3_3:88459710-88459729 Msa0482020:three_prime_UTR 35.0%
TGTTTATGTGATCCGATATG+AGG + chr3_3:88459850-88459869 Msa0482020:three_prime_UTR 35.0%
CTTGTATAACTGGTGCAAAA+TGG + chr3_3:88459938-88459957 Msa0482020:three_prime_UTR 35.0%
ACTTGCACTGGAATGATTTA+AGG - chr3_3:88459993-88460012 None:intergenic 35.0%
TCCAGTGCAAGTACAAAATT+TGG + chr3_3:88460001-88460020 Msa0482020:three_prime_UTR 35.0%
! GAACTACGAATTTGGTTCGA+AGG - chr3_3:88451460-88451479 None:intergenic 40.0%
TCAACCCAATGACTCACAAA+AGG + chr3_3:88451505-88451524 Msa0482020:CDS 40.0%
!! TAGTTCTGGAAGTGAAAGAG+AGG + chr3_3:88451660-88451679 Msa0482020:CDS 40.0%
! AGTCTTCCTGTTGGTAGAAA+TGG + chr3_3:88451701-88451720 Msa0482020:CDS 40.0%
! TTCCTGTTGGTAGAAATGGT+AGG + chr3_3:88451705-88451724 Msa0482020:CDS 40.0%
! TCCTGTTGGTAGAAATGGTA+GGG + chr3_3:88451706-88451725 Msa0482020:CDS 40.0%
TGATCAAATGTTTCCGGTGT+TGG - chr3_3:88452018-88452037 None:intergenic 40.0%
ATTTGCAAACATGGAGGGTT+TGG - chr3_3:88452198-88452217 None:intergenic 40.0%
! GAAATGGCGTCAAGATTTTG+AGG + chr3_3:88452256-88452275 Msa0482020:intron 40.0%
TAGACATAGATTGTGCTGAG+TGG - chr3_3:88452493-88452512 None:intergenic 40.0%
ACAACCTTTGATCATCTGCA+GGG - chr3_3:88452586-88452605 None:intergenic 40.0%
CAAAATGGCTTAAACACAGC+AGG - chr3_3:88452920-88452939 None:intergenic 40.0%
! CTGCTGTGTTTAAGCCATTT+TGG + chr3_3:88452918-88452937 Msa0482020:CDS 40.0%
!! CTGTGTTTAAGCCATTTTGG+CGG + chr3_3:88452921-88452940 Msa0482020:CDS 40.0%
TTCTTCATAAGCCGCCAAAA+TGG - chr3_3:88452935-88452954 None:intergenic 40.0%
GTTAAAATCACATGCGTCTC+AGG + chr3_3:88452958-88452977 Msa0482020:CDS 40.0%
!! TCAGCCTTGTTTGACATGAT+TGG + chr3_3:88453251-88453270 Msa0482020:intron 40.0%
TGGACCAATCATGTCAAACA+AGG - chr3_3:88453258-88453277 None:intergenic 40.0%
! GAAGAACTATGGTGGAGATA+AGG + chr3_3:88453419-88453438 Msa0482020:intron 40.0%
GAGAGTCAAATTCATGTACC+TGG + chr3_3:88453511-88453530 Msa0482020:intron 40.0%
ACACATTACACATGTCTTCC+AGG - chr3_3:88453532-88453551 None:intergenic 40.0%
TGTTTACGCGATCTAGTCTA+AGG + chr3_3:88453552-88453571 Msa0482020:intron 40.0%
!! AGAGTTATTGGTTCCGATCA+TGG + chr3_3:88453924-88453943 Msa0482020:intron 40.0%
TTTGATCGAGATGCCATGAT+CGG - chr3_3:88453940-88453959 None:intergenic 40.0%
ATCATGGCATCTCGATCAAA+TGG + chr3_3:88453940-88453959 Msa0482020:intron 40.0%
TGGTCTCAAACTCACTCAAT+TGG - chr3_3:88454011-88454030 None:intergenic 40.0%
CTTCATATGCAAGCTTCGAT+TGG - chr3_3:88454031-88454050 None:intergenic 40.0%
CACAAAAACTGTGATGCTGA+TGG + chr3_3:88454058-88454077 Msa0482020:intron 40.0%
ATGGTAACCTCAAAAGACGT+TGG + chr3_3:88454077-88454096 Msa0482020:intron 40.0%
!!! CACTTTGAGTTGTTTTCCCT+CGG - chr3_3:88454383-88454402 None:intergenic 40.0%
TAGGGAGCTATAACATCTCA+AGG + chr3_3:88454454-88454473 Msa0482020:intron 40.0%
GACAAAAACTTCAGCCTCAA+AGG + chr3_3:88454476-88454495 Msa0482020:intron 40.0%
CACATTCTTTGTAGCCTTTG+AGG - chr3_3:88454493-88454512 None:intergenic 40.0%
! TGATGGTGAAGTAGTGCATT+TGG + chr3_3:88454541-88454560 Msa0482020:intron 40.0%
AATGTGCCATGAAAGACTCA+AGG + chr3_3:88454597-88454616 Msa0482020:intron 40.0%
AATCCACCTTGAGTCTTTCA+TGG - chr3_3:88454606-88454625 None:intergenic 40.0%
AAAGTGAAGCAGAATCCAAG+TGG + chr3_3:88454727-88454746 Msa0482020:intron 40.0%
! GTTTGGTATCGGGTAATCAA+AGG + chr3_3:88454918-88454937 Msa0482020:intron 40.0%
CAACAAAGAGGGGTGATTTA+GGG + chr3_3:88455019-88455038 Msa0482020:intron 40.0%
!!! CGACGCTTATTTTGAAAAGG+AGG + chr3_3:88455941-88455960 Msa0482020:intron 40.0%
GACTAACAGAGTTTACATCC+AGG - chr3_3:88456122-88456141 None:intergenic 40.0%
ACTAACGGAGTCTGCATTTA+GGG - chr3_3:88456153-88456172 None:intergenic 40.0%
GACTAACGAAGTCTACATTC+AGG - chr3_3:88456186-88456205 None:intergenic 40.0%
TGAGTAACAGAGTCTACTTC+AGG + chr3_3:88456223-88456242 Msa0482020:intron 40.0%
GAGTAACAGAGTCTACTTCA+GGG + chr3_3:88456224-88456243 Msa0482020:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - chr3_3:88456299-88456318 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr3_3:88456201-88456220 None:intergenic 40.0%
!!! TGGATTTTGGAGCATAGATG+CGG + chr3_3:88456392-88456411 Msa0482020:intron 40.0%
ATCCCTTAGAACCAAGTTTG+TGG + chr3_3:88456514-88456533 Msa0482020:three_prime_UTR 40.0%
!! GAACCACAAACTTGGTTCTA+AGG - chr3_3:88456520-88456539 None:intergenic 40.0%
! TGGATTGCATTTGGAGTTGA+AGG - chr3_3:88456556-88456575 None:intergenic 40.0%
GTGAGTCATTGGATTGCATT+TGG - chr3_3:88456565-88456584 None:intergenic 40.0%
GAATACTATAGTCTTCCCGT+TGG + chr3_3:88456757-88456776 Msa0482020:three_prime_UTR 40.0%
ATCCCTACCATTTCTACCAA+CGG - chr3_3:88451711-88451730 None:intergenic 40.0%
! AGTTTGCTTTATTGAGGAGG+TGG + chr3_3:88456940-88456959 Msa0482020:intron 40.0%
TTTATTGAGGAGGTGGAACT+GGG + chr3_3:88456947-88456966 Msa0482020:intron 40.0%
ACAAACATTGGACATGCCTT+CGG - chr3_3:88457046-88457065 None:intergenic 40.0%
!! AATATCGGCTTGTAAGGTGA+GGG - chr3_3:88457129-88457148 None:intergenic 40.0%
!! CCAAACAATATCGGCTTGTA+AGG - chr3_3:88457135-88457154 None:intergenic 40.0%
CCTTACAAGCCGATATTGTT+TGG + chr3_3:88457132-88457151 Msa0482020:intron 40.0%
TGGTATTGTAGGGTTGAGTT+AGG + chr3_3:88457340-88457359 Msa0482020:intron 40.0%
GATCTGTCTCACTGAATCAT+AGG + chr3_3:88457479-88457498 Msa0482020:intron 40.0%
ATAAACATAGAGGGTCTGGT+TGG - chr3_3:88457582-88457601 None:intergenic 40.0%
! GAAATGGCGTCAAGATTTTG+AGG + chr3_3:88452256-88452275 Msa0482020:intron 40.0%
ACTTTCTCTAGGTAAAGGAC+AGG + chr3_3:88457921-88457940 Msa0482020:intron 40.0%
CATTGAGTAAGCTTCCAACT+GGG + chr3_3:88458148-88458167 Msa0482020:three_prime_UTR 40.0%
AGTATCTGTTCTTTCCCAGT+TGG - chr3_3:88458165-88458184 None:intergenic 40.0%
ACTGGGAAAGAACAGATACT+TGG + chr3_3:88458165-88458184 Msa0482020:three_prime_UTR 40.0%
TTATAGTTAGAACTCCACGG+TGG + chr3_3:88458277-88458296 Msa0482020:intron 40.0%
CATGAACTACATTACCTTGC+TGG + chr3_3:88458323-88458342 Msa0482020:intron 40.0%
GGAACCATTTATTTCCAGCA+AGG - chr3_3:88458340-88458359 None:intergenic 40.0%
AAGCCACACTTCAGTACAAA+GGG - chr3_3:88458594-88458613 None:intergenic 40.0%
TAAGCCACACTTCAGTACAA+AGG - chr3_3:88458595-88458614 None:intergenic 40.0%
TTCAAATCGAGACGTCATTG+GGG + chr3_3:88458781-88458800 Msa0482020:intron 40.0%
! ATGGTTGGCTACCAACATTA+GGG - chr3_3:88458847-88458866 None:intergenic 40.0%
! TATGGTTGGCTACCAACATT+AGG - chr3_3:88458848-88458867 None:intergenic 40.0%
CCTCAAATTCACAAGGTGAA+TGG - chr3_3:88458871-88458890 None:intergenic 40.0%
CCATTCACCTTGTGAATTTG+AGG + chr3_3:88458868-88458887 Msa0482020:intron 40.0%
AGAACCTCCCTATTAAGATC+AGG + chr3_3:88458901-88458920 Msa0482020:intron 40.0%
GGAACCACCTGATCTTAATA+GGG - chr3_3:88458911-88458930 None:intergenic 40.0%
TGGAACCACCTGATCTTAAT+AGG - chr3_3:88458912-88458931 None:intergenic 40.0%
! TCTAGCTCACATGATGATTC+TGG - chr3_3:88458937-88458956 None:intergenic 40.0%
! CACGAGTTCCTCTTTTCTTT+GGG + chr3_3:88458970-88458989 Msa0482020:intron 40.0%
!! AGTTCCTCTTTTCTTTGGGA+TGG + chr3_3:88458974-88458993 Msa0482020:intron 40.0%
TGGTTCGAGTGAAAGAGTTA+AGG - chr3_3:88459200-88459219 None:intergenic 40.0%
TTGGGGGAGAGAAAAAAGAT+TGG - chr3_3:88459294-88459313 None:intergenic 40.0%
!! AAGGTGAATGAGTTGGTTTG+GGG - chr3_3:88459311-88459330 None:intergenic 40.0%
! AAGATTTTGCTCTGCAGAGA+CGG + chr3_3:88459447-88459466 Msa0482020:three_prime_UTR 40.0%
GAATCAAAGAGGAATTAGGC+AGG + chr3_3:88459714-88459733 Msa0482020:three_prime_UTR 40.0%
AAGAACCAAATTCGTCTGCT+TGG + chr3_3:88459816-88459835 Msa0482020:three_prime_UTR 40.0%
! GCCAAATTTTGTACTTGCAC+TGG - chr3_3:88460005-88460024 None:intergenic 40.0%
TGGCTGTTACTATGATTCAG+AGG + chr3_3:88460021-88460040 Msa0482020:three_prime_UTR 40.0%
! CTATGATTCAGAGGAGTACA+CGG + chr3_3:88460030-88460049 Msa0482020:three_prime_UTR 40.0%
ATTTCTCTTGTTCGCGAGTA+TGG + chr3_3:88460060-88460079 Msa0482020:three_prime_UTR 40.0%
TGAAGAAAGACGAGGAAGAG+TGG - chr3_3:88451429-88451448 None:intergenic 45.0%
!! GTGAGTCATTGGGTTGACTT+TGG - chr3_3:88451502-88451521 None:intergenic 45.0%
TCCCTACCATTTCTACCAAC+AGG - chr3_3:88451710-88451729 None:intergenic 45.0%
ACGCCTTTGGACAGAAATGT+CGG - chr3_3:88451951-88451970 None:intergenic 45.0%
TCATTGTTTGCGTCGTGTCA+AGG + chr3_3:88452079-88452098 Msa0482020:intron 45.0%
! GAGGGTTTGGTTGCTTAAGT+AGG - chr3_3:88452185-88452204 None:intergenic 45.0%
CACAACCTTTGATCATCTGC+AGG - chr3_3:88452587-88452606 None:intergenic 45.0%
CATTGAGTAAGCTTCCCACT+GGG + chr3_3:88452627-88452646 Msa0482020:CDS 45.0%
ATTGAGTAAGCTTCCCACTG+GGG + chr3_3:88452628-88452647 Msa0482020:CDS 45.0%
AGTATTTCCTCTTCCCCAGT+GGG - chr3_3:88452644-88452663 None:intergenic 45.0%
AAGTATTTCCTCTTCCCCAG+TGG - chr3_3:88452645-88452664 None:intergenic 45.0%
!! TGATCTGAGAGGTTTTGGTC+CGG + chr3_3:88452673-88452692 Msa0482020:CDS 45.0%
TGTTACATTGGTGGGAGAGT+TGG + chr3_3:88453137-88453156 Msa0482020:intron 45.0%
TTGCTCTGCAGAAACTCTCA+AGG + chr3_3:88453305-88453324 Msa0482020:intron 45.0%
TTACGCGATCTAGTCTAAGG+AGG + chr3_3:88453555-88453574 Msa0482020:intron 45.0%
CTCACACACACTCACTCAAT+TGG - chr3_3:88453858-88453877 None:intergenic 45.0%
! CCTAACTCCAACGTCTTTTG+AGG - chr3_3:88454087-88454106 None:intergenic 45.0%
CCTCAAAAGACGTTGGAGTT+AGG + chr3_3:88454084-88454103 Msa0482020:intron 45.0%
TACAGTCTACACACCATGAC+TGG + chr3_3:88454139-88454158 Msa0482020:intron 45.0%
GGTTACAAGATGATCACCGA+GGG + chr3_3:88454364-88454383 Msa0482020:intron 45.0%
TATTTGGGCACTCATCCACT+TGG - chr3_3:88454745-88454764 None:intergenic 45.0%
TGGATGAGTGCCCAAATACA+AGG + chr3_3:88454747-88454766 Msa0482020:intron 45.0%
CCTAAATCACCCCTCTTTGT+TGG - chr3_3:88455021-88455040 None:intergenic 45.0%
CCAACAAAGAGGGGTGATTT+AGG + chr3_3:88455018-88455037 Msa0482020:intron 45.0%
! CGAGTTAGAGGGGTGATTTT+GGG - chr3_3:88455056-88455075 None:intergenic 45.0%
! ACGAGTTAGAGGGGTGATTT+TGG - chr3_3:88455057-88455076 None:intergenic 45.0%
GTTTGTTCGTCGTCTTTGTG+CGG + chr3_3:88455164-88455183 Msa0482020:intron 45.0%
! GTCATTGATTGGATCTGCAC+TGG - chr3_3:88455255-88455274 None:intergenic 45.0%
! ATCCGAAGGCATGGTTATTC+CGG + chr3_3:88455297-88455316 Msa0482020:intron 45.0%
TGGCCGTCAAAATTAGAGGT+TGG - chr3_3:88455580-88455599 None:intergenic 45.0%
GACGAATCGTTTCCCATTCA+AGG - chr3_3:88456061-88456080 None:intergenic 45.0%
GACTAACGGAGTCTGCATTT+AGG - chr3_3:88456154-88456173 None:intergenic 45.0%
TGACTACTCCTTTCCCATTC+AGG + chr3_3:88456283-88456302 Msa0482020:intron 45.0%
GACTACTCCTTTCCCATTCA+GGG + chr3_3:88456284-88456303 Msa0482020:intron 45.0%
CTTTAGTCCCTGAATGGGAA+AGG - chr3_3:88456294-88456313 None:intergenic 45.0%
!!! ATTTTGGAGCATAGATGCGG+TGG + chr3_3:88456395-88456414 Msa0482020:intron 45.0%
!!! TTTTGGAGCATAGATGCGGT+GGG + chr3_3:88456396-88456415 Msa0482020:intron 45.0%
AAGACTGAATTGAATGGCGC+TGG + chr3_3:88456448-88456467 Msa0482020:exon 45.0%
TGAAGAAAGACGAGGAAGAG+TGG - chr3_3:88451429-88451448 None:intergenic 45.0%
CTAAGGGATGAAGAAAGACG+AGG - chr3_3:88456503-88456522 None:intergenic 45.0%
AGAGCTTCGAACCACAAACT+TGG - chr3_3:88456528-88456547 None:intergenic 45.0%
AAGTACCTTGCGTGAGTCAT+TGG - chr3_3:88456576-88456595 None:intergenic 45.0%
! AGTCTTCCCGTTGGTAGAAA+TGG + chr3_3:88456766-88456785 Msa0482020:three_prime_UTR 45.0%
! TTCCCGTTGGTAGAAATGGT+AGG + chr3_3:88456770-88456789 Msa0482020:three_prime_UTR 45.0%
! TCCCGTTGGTAGAAATGGTA+GGG + chr3_3:88456771-88456790 Msa0482020:three_prime_UTR 45.0%
TCCCTACCATTTCTACCAAC+GGG - chr3_3:88451710-88451729 None:intergenic 45.0%
CTTTATTGAGGAGGTGGAAC+TGG + chr3_3:88456946-88456965 Msa0482020:intron 45.0%
!! CAATATCGGCTTGTAAGGTG+AGG - chr3_3:88457130-88457149 None:intergenic 45.0%
AATTGTGATGGCCTGATAGC+AGG - chr3_3:88457221-88457240 None:intergenic 45.0%
TGCTATCAGGCCATCACAAT+TGG + chr3_3:88457220-88457239 Msa0482020:intron 45.0%
GCTATCAGGCCATCACAATT+GGG + chr3_3:88457221-88457240 Msa0482020:intron 45.0%
! AGAAATGGACATCTGGAGTG+TGG - chr3_3:88457247-88457266 None:intergenic 45.0%
ACACTCCAGATGTCCATTTC+TGG + chr3_3:88457246-88457265 Msa0482020:intron 45.0%
CACTCCAGATGTCCATTTCT+GGG + chr3_3:88457247-88457266 Msa0482020:intron 45.0%
! ATGTCCATTTCTGGGAGTGA+AGG + chr3_3:88457255-88457274 Msa0482020:intron 45.0%
! TGTCCATTTCTGGGAGTGAA+GGG + chr3_3:88457256-88457275 Msa0482020:intron 45.0%
GAAATTAGGACTGGAACAGG+TGG - chr3_3:88457548-88457567 None:intergenic 45.0%
GTGGAAATTAGGACTGGAAC+AGG - chr3_3:88457551-88457570 None:intergenic 45.0%
TGGTTGAGCAGGTGGAAATT+AGG - chr3_3:88457562-88457581 None:intergenic 45.0%
! TGTTACTAATCAGAGTGCCC+AGG - chr3_3:88457996-88458015 None:intergenic 45.0%
GATCTATGACACACACTGGT+AGG - chr3_3:88458024-88458043 None:intergenic 45.0%
ATAACTTCTCATCGTCCGCA+GGG - chr3_3:88458107-88458126 None:intergenic 45.0%
GCATTGAGTAAGCTTCCAAC+TGG + chr3_3:88458147-88458166 Msa0482020:three_prime_UTR 45.0%
AGTACTTGAGACAGTCGCTT+CGG - chr3_3:88458436-88458455 None:intergenic 45.0%
CTTCCCTTTGTACTGAAGTG+TGG + chr3_3:88458588-88458607 Msa0482020:intron 45.0%
! GGGCGAGAGTGTACATAATT+TGG - chr3_3:88458650-88458669 None:intergenic 45.0%
TCAAATCGAGACGTCATTGG+GGG + chr3_3:88458782-88458801 Msa0482020:intron 45.0%
CATTGGGGGTAGAGAGAAAT+AGG + chr3_3:88458796-88458815 Msa0482020:intron 45.0%
TGTTGGGGTAACCCTAATGT+TGG + chr3_3:88458833-88458852 Msa0482020:intron 45.0%
CACAAGGTGAATGGTATGGT+TGG - chr3_3:88458862-88458881 None:intergenic 45.0%
ACCTCCCTATTAAGATCAGG+TGG + chr3_3:88458904-88458923 Msa0482020:intron 45.0%
ACCACCTGATCTTAATAGGG+AGG - chr3_3:88458908-88458927 None:intergenic 45.0%
CTCACATGATGATTCTGGCA+TGG - chr3_3:88458932-88458951 None:intergenic 45.0%
GAAAAGAGGAACTCGTGGAT+AGG - chr3_3:88458967-88458986 None:intergenic 45.0%
CCAAAGAAAAGAGGAACTCG+TGG - chr3_3:88458972-88458991 None:intergenic 45.0%
! CCACGAGTTCCTCTTTTCTT+TGG + chr3_3:88458969-88458988 Msa0482020:intron 45.0%
CTTGCCATCCCAAAGAAAAG+AGG - chr3_3:88458981-88459000 None:intergenic 45.0%
!! AGGTGAATGAGTTGGTTTGG+GGG - chr3_3:88459310-88459329 None:intergenic 45.0%
ATGGGATGCCTATACAAGCA+TGG - chr3_3:88459663-88459682 None:intergenic 45.0%
AGAGGAATTAGGCAGGAGAT+AGG + chr3_3:88459721-88459740 Msa0482020:three_prime_UTR 45.0%
GAGGAATTAGGCAGGAGATA+GGG + chr3_3:88459722-88459741 Msa0482020:three_prime_UTR 45.0%
GTCTTCCAAGCAGACGAATT+TGG - chr3_3:88459824-88459843 None:intergenic 45.0%
AATTCGTCTGCTTGGAAGAC+AGG + chr3_3:88459824-88459843 Msa0482020:three_prime_UTR 45.0%
!! AAAAAAAACAAATTATATAT+AGG + chr3_3:88456000-88456019 Msa0482020:intron 5.0%
AGAAAGACGAGGAAGAGTGG+TGG - chr3_3:88451426-88451445 None:intergenic 50.0%
GCAGCTCCGAACTACGAATT+TGG - chr3_3:88451468-88451487 None:intergenic 50.0%
! GCACCGACATTTCTGTCCAA+AGG + chr3_3:88451945-88451964 Msa0482020:intron 50.0%
GCGTCGTGTCAAGGTCATAT+AGG + chr3_3:88452088-88452107 Msa0482020:intron 50.0%
CAACAACAGACCTGTGCTTG+TGG + chr3_3:88452355-88452374 Msa0482020:CDS 50.0%
AGGACCCTGCAGATGATCAA+AGG + chr3_3:88452579-88452598 Msa0482020:CDS 50.0%
GCATTGAGTAAGCTTCCCAC+TGG + chr3_3:88452626-88452645 Msa0482020:CDS 50.0%
GTCTACACACCATGACTGGA+AGG + chr3_3:88454143-88454162 Msa0482020:intron 50.0%
GGGTTACAAGATGATCACCG+AGG + chr3_3:88454363-88454382 Msa0482020:intron 50.0%
GTGCCATGAAAGACTCAAGG+TGG + chr3_3:88454600-88454619 Msa0482020:intron 50.0%
CTCCGGAATAACCATGCCTT+CGG - chr3_3:88455302-88455321 None:intergenic 50.0%
AGAAAGACGAGGAAGAGTGG+TGG - chr3_3:88451426-88451445 None:intergenic 50.0%
GCAATCCAATGACTCACGCA+AGG + chr3_3:88456568-88456587 Msa0482020:three_prime_UTR 50.0%
CACTCCCAGAAATGGACATC+TGG - chr3_3:88457254-88457273 None:intergenic 50.0%
! GTCCATTTCTGGGAGTGAAG+GGG + chr3_3:88457257-88457276 Msa0482020:intron 50.0%
GAGCAGGTGGAAATTAGGAC+TGG - chr3_3:88457557-88457576 None:intergenic 50.0%
CAATGACAGACCTGTGCTTG+TGG + chr3_3:88457740-88457759 Msa0482020:three_prime_UTR 50.0%
CATAACTTCTCATCGTCCGC+AGG - chr3_3:88458108-88458127 None:intergenic 50.0%
CAAGTTAAGCAATGCCACCG+TGG - chr3_3:88458294-88458313 None:intergenic 50.0%
TTCATGACGCTGTCAGCTCT+TGG - chr3_3:88458361-88458380 None:intergenic 50.0%
! GGCTTGGTAAGCTGCCAAAT+TGG - chr3_3:88458487-88458506 None:intergenic 50.0%
TGGGGGTAGAGAGAAATAGG+AGG + chr3_3:88458799-88458818 Msa0482020:intron 50.0%
AGGAGGTAACTGCTCACTGT+TGG + chr3_3:88458816-88458835 Msa0482020:intron 50.0%
GGAGGTAACTGCTCACTGTT+GGG + chr3_3:88458817-88458836 Msa0482020:intron 50.0%
GAGGTAACTGCTCACTGTTG+GGG + chr3_3:88458818-88458837 Msa0482020:intron 50.0%
AGACGAGGAAGAGTGGTGGT+TGG - chr3_3:88451422-88451441 None:intergenic 55.0%
ACACGTGTCAGACACGCCTT+TGG - chr3_3:88451964-88451983 None:intergenic 55.0%
GCGTGACACATGTCCAACAC+CGG + chr3_3:88452002-88452021 Msa0482020:intron 55.0%
CAACAGACCTGTGCTTGTGG+TGG + chr3_3:88452358-88452377 Msa0482020:CDS 55.0%
GATGCTACCACCACAAGCAC+AGG - chr3_3:88452368-88452387 None:intergenic 55.0%
TAAGCTTCCCACTGGGGAAG+AGG + chr3_3:88452634-88452653 Msa0482020:CDS 55.0%
CGCGATCTAGTCTAAGGAGG+AGG + chr3_3:88453558-88453577 Msa0482020:intron 55.0%
GTGACGGCTCACGAGAGAAA+GGG - chr3_3:88454971-88454990 None:intergenic 55.0%
CATCCACGTTGCAGATCCGA+AGG + chr3_3:88455283-88455302 Msa0482020:intron 55.0%
ATGCCTTCGGATCTGCAACG+TGG - chr3_3:88455289-88455308 None:intergenic 55.0%
ACGTTGCAGATCCGAAGGCA+TGG + chr3_3:88455288-88455307 Msa0482020:intron 55.0%
TGTGATGGCCTGATAGCAGG+TGG - chr3_3:88457218-88457237 None:intergenic 55.0%
GGAGTGTGGCCCAATTGTGA+TGG - chr3_3:88457233-88457252 None:intergenic 55.0%
CACCCCTTCACTCCCAGAAA+TGG - chr3_3:88457262-88457281 None:intergenic 55.0%
! TGAAGGGGTGTGTCGAGAGT+AGG + chr3_3:88457272-88457291 Msa0482020:intron 55.0%
TGACAGACCTGTGCTTGTGG+TGG + chr3_3:88457743-88457762 Msa0482020:three_prime_UTR 55.0%
TTTGCTCTGCAGAGACGGTG+AGG + chr3_3:88459452-88459471 Msa0482020:three_prime_UTR 55.0%
TCTGCAGGGTCCTGTTCCTG+TGG - chr3_3:88452572-88452591 None:intergenic 60.0%
! GGTGACGGCTCACGAGAGAA+AGG - chr3_3:88454972-88454991 None:intergenic 60.0%
GAGCATAGATGCGGTGGGTG+TGG + chr3_3:88456401-88456420 Msa0482020:intron 60.0%
CCTGATAGCAGGTGGCCCAA+TGG - chr3_3:88457210-88457229 None:intergenic 60.0%
CCATTGGGCCACCTGCTATC+AGG + chr3_3:88457207-88457226 Msa0482020:intron 60.0%
! GGTCTGGTTGGTTGAGCAGG+TGG - chr3_3:88457570-88457589 None:intergenic 60.0%
! GAGGGTCTGGTTGGTTGAGC+AGG - chr3_3:88457573-88457592 None:intergenic 60.0%
CTCTGCAGAGACGGTGAGGA+AGG + chr3_3:88459456-88459475 Msa0482020:three_prime_UTR 60.0%
GCTGCGACCACCACAAGCAC+AGG - chr3_3:88457753-88457772 None:intergenic 65.0%
GTCACAGGCACAGGACCCTG+CGG + chr3_3:88458089-88458108 Msa0482020:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 88451398 88460141 88451398 ID=Msa0482020;Name=Msa0482020
chr3_3 mRNA 88451398 88460141 88451398 ID=Msa0482020-mRNA-1;Parent=Msa0482020;Name=Msa0482020-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.45|1|0.9|0.90|11|1402|253
chr3_3 exon 88451398 88451526 88451398 ID=Msa0482020-mRNA-1:exon:25807;Parent=Msa0482020-mRNA-1
chr3_3 exon 88451659 88451811 88451659 ID=Msa0482020-mRNA-1:exon:25808;Parent=Msa0482020-mRNA-1
chr3_3 exon 88452257 88452403 88452257 ID=Msa0482020-mRNA-1:exon:25809;Parent=Msa0482020-mRNA-1
chr3_3 exon 88452575 88452727 88452575 ID=Msa0482020-mRNA-1:exon:25810;Parent=Msa0482020-mRNA-1
chr3_3 exon 88452857 88452979 88452857 ID=Msa0482020-mRNA-1:exon:25811;Parent=Msa0482020-mRNA-1
chr3_3 exon 88456404 88456589 88456404 ID=Msa0482020-mRNA-1:exon:25812;Parent=Msa0482020-mRNA-1
chr3_3 exon 88456724 88456876 88456724 ID=Msa0482020-mRNA-1:exon:25813;Parent=Msa0482020-mRNA-1
chr3_3 exon 88457642 88457788 88457642 ID=Msa0482020-mRNA-1:exon:25814;Parent=Msa0482020-mRNA-1
chr3_3 exon 88458096 88458248 88458096 ID=Msa0482020-mRNA-1:exon:25815;Parent=Msa0482020-mRNA-1
chr3_3 exon 88458409 88458531 88458409 ID=Msa0482020-mRNA-1:exon:25816;Parent=Msa0482020-mRNA-1
chr3_3 exon 88459445 88460141 88459445 ID=Msa0482020-mRNA-1:exon:25817;Parent=Msa0482020-mRNA-1
chr3_3 CDS 88451398 88451526 88451398 ID=Msa0482020-mRNA-1:cds;Parent=Msa0482020-mRNA-1
chr3_3 CDS 88451659 88451811 88451659 ID=Msa0482020-mRNA-1:cds;Parent=Msa0482020-mRNA-1
chr3_3 CDS 88452257 88452403 88452257 ID=Msa0482020-mRNA-1:cds;Parent=Msa0482020-mRNA-1
chr3_3 CDS 88452575 88452727 88452575 ID=Msa0482020-mRNA-1:cds;Parent=Msa0482020-mRNA-1
chr3_3 CDS 88452857 88452979 88452857 ID=Msa0482020-mRNA-1:cds;Parent=Msa0482020-mRNA-1
chr3_3 CDS 88456404 88456460 88456404 ID=Msa0482020-mRNA-1:cds;Parent=Msa0482020-mRNA-1
chr3_3 three_prime_UTR 88456461 88456589 88456461 ID=Msa0482020-mRNA-1:three_prime_utr;Parent=Msa0482020-mRNA-1
chr3_3 three_prime_UTR 88456724 88456876 88456724 ID=Msa0482020-mRNA-1:three_prime_utr;Parent=Msa0482020-mRNA-1
chr3_3 three_prime_UTR 88457642 88457788 88457642 ID=Msa0482020-mRNA-1:three_prime_utr;Parent=Msa0482020-mRNA-1
chr3_3 three_prime_UTR 88458096 88458248 88458096 ID=Msa0482020-mRNA-1:three_prime_utr;Parent=Msa0482020-mRNA-1
chr3_3 three_prime_UTR 88458409 88458531 88458409 ID=Msa0482020-mRNA-1:three_prime_utr;Parent=Msa0482020-mRNA-1
chr3_3 three_prime_UTR 88459445 88460141 88459445 ID=Msa0482020-mRNA-1:three_prime_utr;Parent=Msa0482020-mRNA-1
Gene Sequence

>Msa0482020

ATGGCGTTGTTTCGTGTCAAACCAACCACCACTCTTCCTCGTCTTTCTTCAACAATTTCCCTTCGAACCAAATTCGTAGTTCGGAGCTGCAATCTTCAGTTCCAAAGTCAACCCAATGACTCACAAAAGTTAGTTCTGGAAGTGAAAGAGAGGCTTGAAAAAGAATACTATAGTCTTCCTGTTGGTAGAAATGGTAGGGATGACGAAGATATGATACAATGGTTTCTGAAAGATCGCAAGTTTGATGTTGAAGAAGCTGTTTCGAAGTTGACTAAAGCTATTAAATGGCGTCAAGATTTTGAGGTGTCTAAATTGACTGAAGAAGCCATCAAAGATATCTCTCAAACTGAAAAAGCATATTTACATGAATTTCTAGATATCAACAACAGACCTGTGCTTGTGGTGGTAGCATCAAAGCATTTTCCTAAAGAACAGGACCCTGCAGATGATCAAAGGTTGTGTGTTTTCTTAATTGAGAAGGCATTGAGTAAGCTTCCCACTGGGGAAGAGGAAATACTTGCAATATTTGATCTGAGAGGTTTTGGTCCGGAAAATGCTGATTTTAAATTCTTGGCATTCTTGTTTAATGTATTCTACAATTACTATCCTAATCGATTGTCGCAAGTATTATTTGTGGATGCTCCTGCTGTGTTTAAGCCATTTTGGCGGCTTATGAAGAAGTTGTTAAAATCACATGCGTCTCAGCATAGATGCGGTGGGTGTGGATACAGACAAGAAACTGAGAAGAGAAGACTGAATTGA

Protein sequence

>Msa0482020

MALFRVKPTTTLPRLSSTISLRTKFVVRSCNLQFQSQPNDSQKLVLEVKERLEKEYYSLPVGRNGRDDEDMIQWFLKDRKFDVEEAVSKLTKAIKWRQDFEVSKLTEEAIKDISQTEKAYLHEFLDINNRPVLVVVASKHFPKEQDPADDQRLCVFLIEKALSKLPTGEEEILAIFDLRGFGPENADFKFLAFLFNVFYNYYPNRLSQVLFVDAPAVFKPFWRLMKKLLKSHASQHRCGGCGYRQETEKRRLN*