Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394530 | XP_039690042.1 | 49.421 | 259 | 131 | 0 | 109 | 367 | 3 | 261 | 4.54e-76 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394530 | sp|P10978|POLX_TOBAC | 33.333 | 147 | 90 | 4 | 22 | 164 | 544 | 686 | 2.58e-13 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394530 | G7JZK4 | 49.612 | 258 | 130 | 0 | 110 | 367 | 6 | 263 | 2.60e-76 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223910 | Msa0394530 | 0.818202 | 2.217132e-52 | -8.615850e-47 |
| Msa0394530 | Msa0416650 | 0.800797 | 1.217540e-48 | -8.615850e-47 |
| Msa0394530 | Msa0538170 | 0.802879 | 4.550427e-49 | -8.615850e-47 |
| Msa0394530 | Msa0554050 | 0.822273 | 2.586827e-53 | -8.615850e-47 |
| Msa0394530 | Msa0644140 | 0.812033 | 5.195690e-51 | -8.615850e-47 |
| Msa0394530 | Msa0663380 | 0.800401 | 1.466758e-48 | -8.615850e-47 |
| Msa0394530 | Msa0679290 | -0.806356 | 8.560896e-50 | -8.615850e-47 |
| Msa0394530 | Msa0691010 | 0.805075 | 1.590616e-49 | -8.615850e-47 |
| Msa0394530 | Msa0860110 | 0.820119 | 8.118085e-53 | -8.615850e-47 |
| Msa0394530 | Msa1091830 | 0.820257 | 7.546297e-53 | -8.615850e-47 |
| Msa0394530 | Msa1116100 | 0.841873 | 3.647950e-58 | -8.615850e-47 |
| Msa0394530 | Msa1147790 | 0.817690 | 2.893093e-52 | -8.615850e-47 |
| Msa0394530 | Msa1196960 | 0.819124 | 1.369284e-52 | -8.615850e-47 |
| Msa0394530 | Msa1240030 | 0.809546 | 1.793717e-50 | -8.615850e-47 |
| Msa0279510 | Msa0394530 | 0.836481 | 9.123327e-57 | -8.615850e-47 |
| Msa0285450 | Msa0394530 | 0.814069 | 1.858497e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394530 | MtrunA17_Chr5g0430431 | 47.490 | 259 | 127 | 1 | 109 | 367 | 3 | 252 | 1.50e-71 | 226 |
| Msa0394530 | MtrunA17_Chr1g0175891 | 44.545 | 220 | 111 | 2 | 109 | 328 | 3 | 211 | 8.83e-52 | 174 |
| Msa0394530 | MtrunA17_Chr7g0229241 | 29.457 | 129 | 91 | 0 | 22 | 150 | 527 | 655 | 2.65e-13 | 72.4 |
| Msa0394530 | MtrunA17_Chr1g0153361 | 31.250 | 144 | 90 | 3 | 3 | 143 | 900 | 1037 | 7.59e-13 | 70.9 |
| Msa0394530 | MtrunA17_Chr2g0281511 | 27.885 | 104 | 73 | 1 | 264 | 367 | 13 | 114 | 1.97e-12 | 63.9 |
| Msa0394530 | MtrunA17_Chr8g0373071 | 32.143 | 112 | 75 | 1 | 22 | 132 | 597 | 708 | 2.09e-12 | 69.3 |
| Msa0394530 | MtrunA17_Chr3g0101191 | 33.621 | 116 | 76 | 1 | 22 | 136 | 584 | 699 | 5.00e-12 | 68.2 |
| Msa0394530 | MtrunA17_Chr8g0351191 | 31.538 | 130 | 84 | 2 | 21 | 149 | 9 | 134 | 1.12e-11 | 67.0 |
| Msa0394530 | MtrunA17_Chr6g0459981 | 35.714 | 98 | 59 | 2 | 268 | 365 | 58 | 151 | 1.35e-11 | 62.8 |
| Msa0394530 | MtrunA17_Chr8g0390891 | 30.275 | 109 | 76 | 0 | 21 | 129 | 215 | 323 | 1.54e-11 | 66.6 |
| Msa0394530 | MtrunA17_Chr2g0309121 | 28.571 | 98 | 67 | 2 | 270 | 367 | 19 | 113 | 8.19e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCACAAATAATTAAATTA+AGG | 0.145429 | 3_2:-9200513 | Msa0394530:CDS |
| GTTGATAACGGGTATGTTTA+TGG | 0.216017 | 3_2:+9200215 | None:intergenic |
| AGCTTAGTTCTCATTATTAA+AGG | 0.220039 | 3_2:+9200307 | None:intergenic |
| ATTCTTAAATGAGAGATATT+TGG | 0.221651 | 3_2:+9200175 | None:intergenic |
| ATCAAAATTGCCAAAGAGTT+TGG | 0.223592 | 3_2:-9198434 | Msa0394530:CDS |
| CCTCATGTACGTACACAAAA+TGG | 0.285239 | 3_2:-9200373 | Msa0394530:CDS |
| GCCGCTATGGACTGAAATTA+TGG | 0.292884 | 3_2:-9194084 | Msa0394530:CDS |
| CTCGTAGTCGAGCCTAATTT+TGG | 0.324104 | 3_2:+9198397 | None:intergenic |
| AATAATTATTGCATGTCAAT+TGG | 0.341191 | 3_2:-9200418 | Msa0394530:CDS |
| TGCACAAATAATTAAATTAA+GGG | 0.359054 | 3_2:-9200512 | Msa0394530:CDS |
| AAAACAGATCTTCTTCGTTT+CGG | 0.380005 | 3_2:+9194115 | None:intergenic |
| CCGCATCAGTTCTTTGCAAA+TGG | 0.382472 | 3_2:+9198189 | None:intergenic |
| GCATGACCCCAAACTGTAAC+TGG | 0.383041 | 3_2:+9200283 | None:intergenic |
| TAAGCTACCAGTTACAGTTT+GGG | 0.388548 | 3_2:-9200290 | Msa0394530:CDS |
| CTAAGCTACCAGTTACAGTT+TGG | 0.395089 | 3_2:-9200291 | Msa0394530:CDS |
| TCTTGAAAAGGAAGTATCTA+AGG | 0.398028 | 3_2:-9197750 | Msa0394530:CDS |
| GGATTGCTTCTTTCTGATGA+AGG | 0.411830 | 3_2:-9198515 | Msa0394530:CDS |
| TGATAGGTTGATCTGTGATT+TGG | 0.412819 | 3_2:-9197596 | Msa0394530:CDS |
| ACCCGTTATCAACTTGCAAT+TGG | 0.414405 | 3_2:-9200205 | Msa0394530:CDS |
| TTGCAGCACTCATACGTCTA+AGG | 0.417675 | 3_2:-9200249 | Msa0394530:CDS |
| ATCGTCTGAAATAATCTCAA+TGG | 0.419286 | 3_2:+9198292 | None:intergenic |
| GCCAATTGCAAGTTGATAAC+GGG | 0.425565 | 3_2:+9200204 | None:intergenic |
| GAAATCAACTTCAACTCTCC+TGG | 0.432821 | 3_2:-9198536 | Msa0394530:CDS |
| TCTTCTTCGTTTCGGTTCGC+CGG | 0.437711 | 3_2:+9194123 | None:intergenic |
| AACATCTCCTCACCGGCGTC+GGG | 0.440406 | 3_2:+9194053 | None:intergenic |
| AAAACACTCGGAATGTAAAC+TGG | 0.442676 | 3_2:+9198338 | None:intergenic |
| CTTAATTTAATTATTTGTGC+AGG | 0.444714 | 3_2:+9200514 | None:intergenic |
| TGCCAATTGCAAGTTGATAA+CGG | 0.447944 | 3_2:+9200203 | None:intergenic |
| GCGACTTACAAGAGGGTGAT+AGG | 0.454883 | 3_2:-9197612 | Msa0394530:CDS |
| ATTAACTATGTCACACACTT+TGG | 0.464937 | 3_2:-9198491 | Msa0394530:CDS |
| TGTAGTAGTGTTGTCGAATA+CGG | 0.470976 | 3_2:+9198573 | None:intergenic |
| AGACATATAATTGCAAGGTT+AGG | 0.481535 | 3_2:-9197699 | Msa0394530:CDS |
| AATTGCAAGGTTAGGACTGC+TGG | 0.486975 | 3_2:-9197691 | Msa0394530:CDS |
| GGATGACATAGGGGTGTACA+TGG | 0.487117 | 3_2:-9198465 | Msa0394530:CDS |
| TGGTTGACAGCACCTGCATT+TGG | 0.493206 | 3_2:+9198209 | None:intergenic |
| AGTGACACTAAACAAACAAA+TGG | 0.499685 | 3_2:-9198266 | Msa0394530:CDS |
| TATCCAAAAGAGTCTTGAAA+AGG | 0.500272 | 3_2:-9197762 | Msa0394530:CDS |
| TCGTCTGAAATAATCTCAAT+GGG | 0.507491 | 3_2:+9198293 | None:intergenic |
| AAACATCTCCTCACCGGCGT+CGG | 0.516148 | 3_2:+9194052 | None:intergenic |
| ACTTTGGCATGGATGACATA+GGG | 0.518231 | 3_2:-9198475 | Msa0394530:CDS |
| TCATCAGAAAGAAGCAATCC+AGG | 0.521774 | 3_2:+9198518 | None:intergenic |
| ATAGGGGTGTACATGGGTAA+TGG | 0.523281 | 3_2:-9198458 | Msa0394530:CDS |
| CTGACATACATCTTGGTTGG+TGG | 0.524036 | 3_2:+9197568 | None:intergenic |
| GGTTCTTCTTTAACTCGTGC+GGG | 0.525841 | 3_2:+9198314 | None:intergenic |
| ATGTATAAGCTGACACAACT+AGG | 0.527948 | 3_2:-9198362 | Msa0394530:CDS |
| AAGGATGACTTTAGAAGATG+TGG | 0.531894 | 3_2:-9197731 | Msa0394530:CDS |
| GGGTTCTTCTTTAACTCGTG+CGG | 0.537410 | 3_2:+9198313 | None:intergenic |
| AATGAAATTCAGCCAAATGC+AGG | 0.542485 | 3_2:-9198221 | Msa0394530:CDS |
| GTATGTTTATGGTCAGCACT+TGG | 0.547557 | 3_2:+9200226 | None:intergenic |
| GGAATGAGTTTCTGTGGAGG+AGG | 0.548968 | 3_2:+9194191 | None:intergenic |
| AGTTGAAGTTGATTTCTTTG+CGG | 0.550393 | 3_2:+9198543 | None:intergenic |
| CTATGTCACACACTTTGGCA+TGG | 0.550418 | 3_2:-9198486 | Msa0394530:CDS |
| TAGGTTGATCTGTGATTTGG+AGG | 0.554215 | 3_2:-9197593 | Msa0394530:CDS |
| TTGTAGTGTATGTCGACGGC+AGG | 0.557568 | 3_2:+9194170 | None:intergenic |
| CATACACTACAAATTGAAGT+TGG | 0.560864 | 3_2:-9194159 | Msa0394530:CDS |
| CACTTTGGCATGGATGACAT+AGG | 0.572562 | 3_2:-9198476 | Msa0394530:CDS |
| AAGGTTAGGACTGCTGGCAG+AGG | 0.574800 | 3_2:-9197685 | Msa0394530:CDS |
| CAAAATTAGGCTCGACTACG+AGG | 0.578308 | 3_2:-9198396 | Msa0394530:CDS |
| AAAATTAGACTTGACAATGC+CGG | 0.581514 | 3_2:-9200463 | Msa0394530:CDS |
| GCATTATCATCACTTTGAGA+AGG | 0.593701 | 3_2:-9198165 | Msa0394530:CDS |
| TGATTCAGATGAAAATTCAC+CGG | 0.597903 | 3_2:+9200444 | None:intergenic |
| TTATCAACTTGCAATTGGCA+AGG | 0.607927 | 3_2:-9200200 | Msa0394530:CDS |
| AGGTTAGGACTGCTGGCAGA+GGG | 0.609643 | 3_2:-9197684 | Msa0394530:CDS |
| CACTAAACAAACAAATGGTG+AGG | 0.610640 | 3_2:-9198261 | Msa0394530:CDS |
| AAGCTACCAGTTACAGTTTG+GGG | 0.611645 | 3_2:-9200289 | Msa0394530:CDS |
| ACGGCAGGAATGAGTTTCTG+TGG | 0.613588 | 3_2:+9194185 | None:intergenic |
| TGTCTGACATACATCTTGGT+TGG | 0.618474 | 3_2:+9197565 | None:intergenic |
| CGTAGACCGCGACTTACAAG+AGG | 0.628965 | 3_2:-9197620 | Msa0394530:CDS |
| CAATTTGTAGTGTATGTCGA+CGG | 0.632942 | 3_2:+9194166 | None:intergenic |
| TATTCGACAACACTACTACA+AGG | 0.634552 | 3_2:-9198570 | Msa0394530:CDS |
| ACACAAGACATATAATTGCA+AGG | 0.637469 | 3_2:-9197704 | Msa0394530:CDS |
| ACTCGTGCGGGTAAAACACT+CGG | 0.638112 | 3_2:+9198326 | None:intergenic |
| AGTTAATCCCGACGCCGGTG+AGG | 0.638161 | 3_2:-9194060 | Msa0394530:CDS |
| CCATTTGCAAAGAACTGATG+CGG | 0.653296 | 3_2:-9198189 | Msa0394530:CDS |
| CAAATGGTGAGGATGAAGCA+AGG | 0.658651 | 3_2:-9198250 | Msa0394530:CDS |
| AAAATTAGGCTCGACTACGA+GGG | 0.671520 | 3_2:-9198395 | Msa0394530:CDS |
| CTTTGGCATGGATGACATAG+GGG | 0.676461 | 3_2:-9198474 | Msa0394530:CDS |
| TATCACCCTCTTGTAAGTCG+CGG | 0.676833 | 3_2:+9197614 | None:intergenic |
| ATGGAAGTTAATCCCGACGC+CGG | 0.684534 | 3_2:-9194065 | Msa0394530:CDS |
| GCAGGAATGAGTTTCTGTGG+AGG | 0.691811 | 3_2:+9194188 | None:intergenic |
| GATGACATAGGGGTGTACAT+GGG | 0.697797 | 3_2:-9198464 | Msa0394530:CDS |
| TCCATAATTTCAGTCCATAG+CGG | 0.700540 | 3_2:+9194083 | None:intergenic |
| AATTTCAGTCCATAGCGGCG+AGG | 0.728038 | 3_2:+9194088 | None:intergenic |
| GTAGACCGCGACTTACAAGA+GGG | 0.735354 | 3_2:-9197619 | Msa0394530:CDS |
| TGAAAACACAAGAATAAACG+AGG | 0.743672 | 3_2:-9194030 | Msa0394530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr3_2:9198777-9198796 | Msa0394530:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr3_2:9198776-9198795 | Msa0394530:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr3_2:9198777-9198796 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr3_2:9198776-9198795 | None:intergenic | 0.0% |
| !! | TAGAATTAAACTATAATTTA+AGG | + | chr3_2:9195887-9195906 | None:intergenic | 10.0% |
| !!! | TAATATAGACAATTTTTTTT+TGG | + | chr3_2:9196539-9196558 | None:intergenic | 10.0% |
| !! | TAGAATATATAGAAATATAT+TGG | + | chr3_2:9196574-9196593 | None:intergenic | 10.0% |
| !! | ATTAAATAATCCAAATAAAA+GGG | + | chr3_2:9197925-9197944 | None:intergenic | 10.0% |
| !! | AATTAAATAATCCAAATAAA+AGG | + | chr3_2:9197926-9197945 | None:intergenic | 10.0% |
| !!! | ATATTGTTTTATATTGTAAA+GGG | + | chr3_2:9197963-9197982 | None:intergenic | 10.0% |
| !!! | AATCAAAAGATATTTTTTTT+TGG | - | chr3_2:9199370-9199389 | Msa0394530:intron | 10.0% |
| !!! | AATCAAAAGATATTTTTTTT+TGG | - | chr3_2:9199370-9199389 | Msa0394530:intron | 10.0% |
| !!! | AATCAAAAGATATTTTTTTT+TGG | - | chr3_2:9199370-9199389 | Msa0394530:intron | 10.0% |
| !! | TGCACAAATAATTAAATTAA+GGG | - | chr3_2:9194024-9194043 | Msa0394530:CDS | 15.0% |
| !!! | ATTTTCTTTATAGTATAATC+AGG | + | chr3_2:9194058-9194077 | None:intergenic | 15.0% |
| !!! | TTTTTATTATTTTCTTCTCT+AGG | - | chr3_2:9194593-9194612 | Msa0394530:intron | 15.0% |
| !!! | TTTTTTCTTCTTTTTAGTAT+AGG | - | chr3_2:9195420-9195439 | Msa0394530:intron | 15.0% |
| !! | AAAAATAACAAATAACACAT+AGG | - | chr3_2:9196507-9196526 | Msa0394530:intron | 15.0% |
| !! | TCTTTAATATAATGTATGTT+AGG | - | chr3_2:9197133-9197152 | Msa0394530:intron | 15.0% |
| !! | GACAAAAAAAAAATAGATAT+AGG | - | chr3_2:9197838-9197857 | Msa0394530:intron | 15.0% |
| !! | TTAAATAATCCAAATAAAAG+GGG | + | chr3_2:9197924-9197943 | None:intergenic | 15.0% |
| !!! | CATATTGTTTTATATTGTAA+AGG | + | chr3_2:9197964-9197983 | None:intergenic | 15.0% |
| !!! | TATGTTTTTTGTTATATTGT+TGG | + | chr3_2:9198341-9198360 | None:intergenic | 15.0% |
| !! | TTGTAAAAAAAAGTTGTTTA+AGG | - | chr3_2:9198404-9198423 | Msa0394530:CDS | 15.0% |
| !! | TGTAAAAAAAAGTTGTTTAA+GGG | - | chr3_2:9198405-9198424 | Msa0394530:CDS | 15.0% |
| !! | AGATAATGAAAATGTATAAA+TGG | - | chr3_2:9198436-9198455 | Msa0394530:CDS | 15.0% |
| !! | GATAATGAAAATGTATAAAT+GGG | - | chr3_2:9198437-9198456 | Msa0394530:CDS | 15.0% |
| !! | ATAATGAAAATGTATAAATG+GGG | - | chr3_2:9198438-9198457 | Msa0394530:CDS | 15.0% |
| !! | CTTAATTTAATTATTTGTGC+AGG | + | chr3_2:9194025-9194044 | None:intergenic | 20.0% |
| !! | CTGCACAAATAATTAAATTA+AGG | - | chr3_2:9194023-9194042 | Msa0394530:CDS | 20.0% |
| !! | AATAATTATTGCATGTCAAT+TGG | - | chr3_2:9194118-9194137 | Msa0394530:CDS | 20.0% |
| !! | ATTCTTAAATGAGAGATATT+TGG | + | chr3_2:9194364-9194383 | None:intergenic | 20.0% |
| !!! | ATCTCTCATTTAAGAATTTT+TGG | - | chr3_2:9194367-9194386 | Msa0394530:intron | 20.0% |
| !! | AACATGGTAAGTAAAATTTA+AGG | + | chr3_2:9194666-9194685 | None:intergenic | 20.0% |
| !!! | TAATAGATTGTTACACTTTT+AGG | - | chr3_2:9195310-9195329 | Msa0394530:intron | 20.0% |
| !!! | AGAATTCTGAAATTCATAAT+TGG | + | chr3_2:9195491-9195510 | None:intergenic | 20.0% |
| !!! | AATTTTTATGCTAGTATAAG+CGG | + | chr3_2:9195538-9195557 | None:intergenic | 20.0% |
| !!! | AGATTATTGGTAATTTCTTT+AGG | - | chr3_2:9195641-9195660 | Msa0394530:intron | 20.0% |
| !! | AAAAAAGGGTTAATTTAAGT+TGG | + | chr3_2:9195923-9195942 | None:intergenic | 20.0% |
| !! | ATGCTATATGAAATCAAAAA+TGG | + | chr3_2:9196741-9196760 | None:intergenic | 20.0% |
| !! | ACTTTATACTTAATGTCATT+AGG | - | chr3_2:9197159-9197178 | Msa0394530:intron | 20.0% |
| !! | TTGAAAGAAACATATTTCTT+TGG | - | chr3_2:9197184-9197203 | Msa0394530:intron | 20.0% |
| !! | TAAGTTTGATTACCAATAAA+GGG | + | chr3_2:9197444-9197463 | None:intergenic | 20.0% |
| !! | TTAAGTTTGATTACCAATAA+AGG | + | chr3_2:9197445-9197464 | None:intergenic | 20.0% |
| !!! | ATTGGTAATCAAACTTAAAT+AGG | - | chr3_2:9197447-9197466 | Msa0394530:intron | 20.0% |
| !!! | ATTGCTTTTTTTTTCTTTTC+CGG | + | chr3_2:9197769-9197788 | None:intergenic | 20.0% |
| !!! | TTAATTTTACCCCTTTTATT+TGG | - | chr3_2:9197912-9197931 | Msa0394530:intron | 20.0% |
| !! | ACCATCACAAAAAAAAATAT+CGG | - | chr3_2:9198053-9198072 | Msa0394530:intron | 20.0% |
| !!! | ATAAATAATCACGATTAGTT+TGG | + | chr3_2:9198308-9198327 | None:intergenic | 20.0% |
| !!! | TCCTCATTTTTAAATGATAA+AGG | - | chr3_2:9198742-9198761 | Msa0394530:intron | 20.0% |
| !! | TCCTTTATCATTTAAAAATG+AGG | + | chr3_2:9198746-9198765 | None:intergenic | 20.0% |
| !!! | GATTTAATTGCTCTTTAAAA+AGG | - | chr3_2:9199197-9199216 | Msa0394530:intron | 20.0% |
| !!! | ATATCTTTTGATTACAATGA+TGG | + | chr3_2:9199363-9199382 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTTTTAAGTCAA+AGG | - | chr3_2:9199386-9199405 | Msa0394530:intron | 20.0% |
| !! | AAAATTAAAACTTGCATTCA+TGG | - | chr3_2:9199409-9199428 | Msa0394530:intron | 20.0% |
| !! | ATCTTAAAATAAACACTCAT+AGG | - | chr3_2:9199541-9199560 | Msa0394530:intron | 20.0% |
| !!! | ATATCTTTTGATTACAATGA+TGG | + | chr3_2:9199363-9199382 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTTTTAAGTCAA+AGG | - | chr3_2:9199386-9199405 | Msa0394530:intron | 20.0% |
| !! | AAAATTAAAACTTGCATTCA+TGG | - | chr3_2:9199409-9199428 | Msa0394530:intron | 20.0% |
| !! | ATCTTAAAATAAACACTCAT+AGG | - | chr3_2:9199541-9199560 | Msa0394530:intron | 20.0% |
| !!! | ATATCTTTTGATTACAATGA+TGG | + | chr3_2:9199363-9199382 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTTTTAAGTCAA+AGG | - | chr3_2:9199386-9199405 | Msa0394530:intron | 20.0% |
| !! | AAAATTAAAACTTGCATTCA+TGG | - | chr3_2:9199409-9199428 | Msa0394530:intron | 20.0% |
| !! | GAACATATATAAATGTAAAC+CGG | + | chr3_2:9200208-9200227 | None:intergenic | 20.0% |
| !! | AGCTTAGTTCTCATTATTAA+AGG | + | chr3_2:9194232-9194251 | None:intergenic | 25.0% |
| !!! | CATTTAAGAATTTTTGGTTG+TGG | - | chr3_2:9194373-9194392 | Msa0394530:intron | 25.0% |
| !!! | TCTAGGTTTGTTTTATATGA+AGG | - | chr3_2:9194610-9194629 | Msa0394530:intron | 25.0% |
| ! | CACTATACTACTATAAAACA+TGG | + | chr3_2:9194682-9194701 | None:intergenic | 25.0% |
| ! | TTCAATAAATCAGTACCTAA+AGG | + | chr3_2:9194993-9195012 | None:intergenic | 25.0% |
| !! | TCTTTTGTTAGATTCCTATA+TGG | - | chr3_2:9195025-9195044 | Msa0394530:intron | 25.0% |
| ! | CACTACTTAATTTACCATAT+AGG | + | chr3_2:9195042-9195061 | None:intergenic | 25.0% |
| !!! | GTATGATTCTATTTTGATTC+TGG | - | chr3_2:9195287-9195306 | Msa0394530:intron | 25.0% |
| !!! | GAAAGATTTGTTGATCTTAA+TGG | - | chr3_2:9195368-9195387 | Msa0394530:intron | 25.0% |
| ! | AAAGAAGAAAAAAGAAAGAC+AGG | + | chr3_2:9195413-9195432 | None:intergenic | 25.0% |
| ! | GTTTATACCTGCAAAAAAAA+TGG | + | chr3_2:9195456-9195475 | None:intergenic | 25.0% |
| !! | TTTGAAACCAGTAAGATTAT+TGG | - | chr3_2:9195628-9195647 | Msa0394530:intron | 25.0% |
| ! | GAAATTACCAATAATCTTAC+TGG | + | chr3_2:9195638-9195657 | None:intergenic | 25.0% |
| ! | GATGCTAGATTTATTAAGAA+TGG | + | chr3_2:9196453-9196472 | None:intergenic | 25.0% |
| !! | GAGTAGAAACTATTTCTTTA+AGG | + | chr3_2:9196693-9196712 | None:intergenic | 25.0% |
| ! | AATCAAAAATGGAACTGTAA+AGG | + | chr3_2:9196730-9196749 | None:intergenic | 25.0% |
| !! | ACTCTTTTGGATATTTGATT+TGG | + | chr3_2:9196767-9196786 | None:intergenic | 25.0% |
| !!! | CAATACCTTTTGTTGTTTAT+TGG | + | chr3_2:9197006-9197025 | None:intergenic | 25.0% |
| !! | CAATAAACAACAAAAGGTAT+TGG | - | chr3_2:9197004-9197023 | Msa0394530:intron | 25.0% |
| ! | TGAAATAACTAACATTGTAG+TGG | + | chr3_2:9197066-9197085 | None:intergenic | 25.0% |
| ! | AAATCATGATTCATTCAAGT+TGG | - | chr3_2:9197097-9197116 | Msa0394530:intron | 25.0% |
| ! | TTGAAAGAAACATGTTTCTT+TGG | - | chr3_2:9197222-9197241 | Msa0394530:intron | 25.0% |
| ! | ATAATAATCCAACCCTTTAT+TGG | - | chr3_2:9197429-9197448 | Msa0394530:intron | 25.0% |
| !!! | CTTCGTAAATTTGTTTCTAA+AGG | + | chr3_2:9197604-9197623 | None:intergenic | 25.0% |
| ! | TTGGCAATCACATTTATTAA+CGG | + | chr3_2:9197737-9197756 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTGTGATGGTTG+AGG | + | chr3_2:9198051-9198070 | None:intergenic | 25.0% |
| !!! | TCCGATATTTTTTTTTGTGA+TGG | + | chr3_2:9198057-9198076 | None:intergenic | 25.0% |
| ! | TTTCTATATTAGCGAAAAGA+TGG | - | chr3_2:9198172-9198191 | Msa0394530:CDS | 25.0% |
| ! | TTCTATATTAGCGAAAAGAT+GGG | - | chr3_2:9198173-9198192 | Msa0394530:CDS | 25.0% |
| ! | TTTACAATAAAGATCGTTGT+TGG | + | chr3_2:9198391-9198410 | None:intergenic | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | - | chr3_2:9198924-9198943 | Msa0394530:intron | 25.0% |
| ! | TAGGTATGTAATTGAAAAAG+AGG | + | chr3_2:9200172-9200191 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTTGTTTTGATTC+TGG | + | chr3_2:9200297-9200316 | None:intergenic | 25.0% |
| AAAATTAGACTTGACAATGC+CGG | - | chr3_2:9194073-9194092 | Msa0394530:CDS | 30.0% | |
| TGATTCAGATGAAAATTCAC+CGG | + | chr3_2:9194095-9194114 | None:intergenic | 30.0% | |
| ! | TATGATGTTTTGCTTGATGA+TGG | - | chr3_2:9194637-9194656 | Msa0394530:intron | 30.0% |
| TCTTAAACCATAACGTTAGA+AGG | + | chr3_2:9194716-9194735 | None:intergenic | 30.0% | |
| TCTAACGTTATGGTTTAAGA+AGG | - | chr3_2:9194716-9194735 | Msa0394530:intron | 30.0% | |
| TGGTTTAAGAAGGATTTCAT+TGG | - | chr3_2:9194726-9194745 | Msa0394530:intron | 30.0% | |
| TTTGCATCAGAAACTAATCA+TGG | + | chr3_2:9194778-9194797 | None:intergenic | 30.0% | |
| !!! | AAGCTGTTTTTGTGTTTTGA+AGG | - | chr3_2:9194811-9194830 | Msa0394530:intron | 30.0% |
| ! | TTTTGCAAAGAGTTATCACA+CGG | + | chr3_2:9194881-9194900 | None:intergenic | 30.0% |
| CAAAACAGAAAGACATTTCA+TGG | - | chr3_2:9194896-9194915 | Msa0394530:intron | 30.0% | |
| CATGAATATCAATTCTTGTC+TGG | + | chr3_2:9195167-9195186 | None:intergenic | 30.0% | |
| TGGAGATAAACATCAGAAAA+AGG | + | chr3_2:9195193-9195212 | None:intergenic | 30.0% | |
| !! | AGATTTGTTGATCTTAATGG+AGG | - | chr3_2:9195371-9195390 | Msa0394530:intron | 30.0% |
| !!! | TAGCTGTTGTTTTCTGTTTA+TGG | - | chr3_2:9195693-9195712 | Msa0394530:intron | 30.0% |
| ! | TCTAACTTTGCTTGATTTTC+TGG | - | chr3_2:9195741-9195760 | Msa0394530:intron | 30.0% |
| CAGAATTTAACTCCAACAAT+TGG | + | chr3_2:9195805-9195824 | None:intergenic | 30.0% | |
| !!! | ACCCTTTTTTACATCAATGT+AGG | - | chr3_2:9195933-9195952 | Msa0394530:intron | 30.0% |
| GCCTACATTGATGTAAAAAA+GGG | + | chr3_2:9195937-9195956 | None:intergenic | 30.0% | |
| AGCCTACATTGATGTAAAAA+AGG | + | chr3_2:9195938-9195957 | None:intergenic | 30.0% | |
| ! | TTTTTACATCAATGTAGGCT+AGG | - | chr3_2:9195938-9195957 | Msa0394530:intron | 30.0% |
| ! | TTTTACATCAATGTAGGCTA+GGG | - | chr3_2:9195939-9195958 | Msa0394530:intron | 30.0% |
| ! | AGTTGAAGTTGATTTCTTTG+CGG | + | chr3_2:9195996-9196015 | None:intergenic | 30.0% |
| ATTAACTATGTCACACACTT+TGG | - | chr3_2:9196045-9196064 | Msa0394530:intron | 30.0% | |
| ATCAAAATTGCCAAAGAGTT+TGG | - | chr3_2:9196102-9196121 | Msa0394530:intron | 30.0% | |
| AACCAAAAATCCAAACTCTT+TGG | + | chr3_2:9196115-9196134 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTCCAACCAAAATT+AGG | - | chr3_2:9196127-9196146 | Msa0394530:intron | 30.0% |
| ! | TCGTCTGAAATAATCTCAAT+GGG | + | chr3_2:9196246-9196265 | None:intergenic | 30.0% |
| ! | ATCGTCTGAAATAATCTCAA+TGG | + | chr3_2:9196247-9196266 | None:intergenic | 30.0% |
| AGTGACACTAAACAAACAAA+TGG | - | chr3_2:9196270-9196289 | Msa0394530:intron | 30.0% | |
| ! | TTTGGCTGAATTTCATTTTC+AGG | + | chr3_2:9196312-9196331 | None:intergenic | 30.0% |
| TTCTGAATCTAATGTAACAG+AGG | + | chr3_2:9196630-9196649 | None:intergenic | 30.0% | |
| TCTGTTACATTAGATTCAGA+AGG | - | chr3_2:9196629-9196648 | Msa0394530:intron | 30.0% | |
| TATCCAAAAGAGTCTTGAAA+AGG | - | chr3_2:9196774-9196793 | Msa0394530:intron | 30.0% | |
| !! | TCTTGAAAAGGAAGTATCTA+AGG | - | chr3_2:9196786-9196805 | Msa0394530:intron | 30.0% |
| ACACAAGACATATAATTGCA+AGG | - | chr3_2:9196832-9196851 | Msa0394530:intron | 30.0% | |
| AGACATATAATTGCAAGGTT+AGG | - | chr3_2:9196837-9196856 | Msa0394530:intron | 30.0% | |
| AATGCTGAGAAAAATTTAGG+TGG | - | chr3_2:9196875-9196894 | Msa0394530:intron | 30.0% | |
| AGAAAAATTTAGGTGGTGAA+TGG | - | chr3_2:9196882-9196901 | Msa0394530:intron | 30.0% | |
| !! | TGATTCATTCAAGTTGGATT+AGG | - | chr3_2:9197103-9197122 | Msa0394530:intron | 30.0% |
| !! | ATTTCTTTGGTGTCATCATT+AGG | - | chr3_2:9197197-9197216 | Msa0394530:intron | 30.0% |
| !! | AAACATGTTTCTTTGGTGTT+AGG | - | chr3_2:9197229-9197248 | Msa0394530:intron | 30.0% |
| ATTTCTGTTGCAATAAAGAG+AGG | + | chr3_2:9197288-9197307 | None:intergenic | 30.0% | |
| TGCTTGTGCTAAAAATGATT+GGG | - | chr3_2:9197315-9197334 | Msa0394530:intron | 30.0% | |
| TTTGATTACCAATAAAGGGT+TGG | + | chr3_2:9197440-9197459 | None:intergenic | 30.0% | |
| CACTATATGTGCAATAACAA+TGG | - | chr3_2:9197510-9197529 | Msa0394530:intron | 30.0% | |
| !! | AAGGAGTATTGTTGAAATCA+TGG | + | chr3_2:9197585-9197604 | None:intergenic | 30.0% |
| TGATTGCCAACAAAATTATC+CGG | - | chr3_2:9197747-9197766 | Msa0394530:CDS | 30.0% | |
| ! | TCTTTTCCGGATAATTTTGT+TGG | + | chr3_2:9197756-9197775 | None:intergenic | 30.0% |
| GACATTGCATAATGTATACA+AGG | - | chr3_2:9198012-9198031 | Msa0394530:intron | 30.0% | |
| TGCATAATGTATACAAGGTT+CGG | - | chr3_2:9198017-9198036 | Msa0394530:intron | 30.0% | |
| ACATTGACGCAATAAAAAGA+CGG | + | chr3_2:9198209-9198228 | None:intergenic | 30.0% | |
| TCCTTAAATGTCAAATCTGT+TGG | - | chr3_2:9198536-9198555 | Msa0394530:CDS | 30.0% | |
| ACCAACAGATTTGACATTTA+AGG | + | chr3_2:9198540-9198559 | None:intergenic | 30.0% | |
| AAATCTGTTGGTCAATTTCA+GGG | - | chr3_2:9198548-9198567 | Msa0394530:CDS | 30.0% | |
| TTAGCAATTTATCTGCATTC+AGG | - | chr3_2:9198672-9198691 | Msa0394530:intron | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | - | chr3_2:9198931-9198950 | Msa0394530:intron | 30.0% | |
| !!! | ACACCAACTACTTTTTATGA+AGG | + | chr3_2:9198937-9198956 | None:intergenic | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr3_2:9198999-9199018 | None:intergenic | 30.0% |
| AGAGAAGTAGTTATAATGAG+AGG | - | chr3_2:9199129-9199148 | Msa0394530:intron | 30.0% | |
| !!! | AAGCGTTGATTTTGATCTAA+TGG | + | chr3_2:9199175-9199194 | None:intergenic | 30.0% |
| ! | ATGGATTTAATTTCACCAGT+TGG | - | chr3_2:9199320-9199339 | Msa0394530:intron | 30.0% |
| !!! | GAGTGTTTATTTTAAGATGC+AGG | + | chr3_2:9199539-9199558 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCTTCTTCTCA+TGG | - | chr3_2:9199580-9199599 | Msa0394530:intron | 30.0% |
| ! | ATGGATTTAATTTCACCAGT+TGG | - | chr3_2:9199320-9199339 | Msa0394530:intron | 30.0% |
| !!! | GAGTGTTTATTTTAAGATGC+AGG | + | chr3_2:9199539-9199558 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCTTCTTCTCA+TGG | - | chr3_2:9199580-9199599 | Msa0394530:intron | 30.0% |
| ! | ATGGATTTAATTTCACCAGT+TGG | - | chr3_2:9199320-9199339 | Msa0394530:intron | 30.0% |
| !!! | TTTGTTTTGATTCTGGTTGT+TGG | + | chr3_2:9200290-9200309 | None:intergenic | 30.0% |
| CATACACTACAAATTGAAGT+TGG | - | chr3_2:9200377-9200396 | Msa0394530:CDS | 30.0% | |
| AAAACAGATCTTCTTCGTTT+CGG | + | chr3_2:9200424-9200443 | None:intergenic | 30.0% | |
| TGAAAACACAAGAATAAACG+AGG | - | chr3_2:9200506-9200525 | Msa0394530:CDS | 30.0% | |
| TAAGCTACCAGTTACAGTTT+GGG | - | chr3_2:9194246-9194265 | Msa0394530:intron | 35.0% | |
| !! | GTTGATAACGGGTATGTTTA+TGG | + | chr3_2:9194324-9194343 | None:intergenic | 35.0% |
| !! | TGCCAATTGCAAGTTGATAA+CGG | + | chr3_2:9194336-9194355 | None:intergenic | 35.0% |
| TTATCAACTTGCAATTGGCA+AGG | - | chr3_2:9194336-9194355 | Msa0394530:intron | 35.0% | |
| ! | TTTTCGACCTTCTAACGTTA+TGG | - | chr3_2:9194706-9194725 | Msa0394530:intron | 35.0% |
| ! | GCTTGAAACTATGGACATTT+TGG | - | chr3_2:9195125-9195144 | Msa0394530:intron | 35.0% |
| TTATCTCCACGTATTTGCAT+AGG | - | chr3_2:9195204-9195223 | Msa0394530:intron | 35.0% | |
| !!! | CTTCTCACCATTTTTTTTGC+AGG | - | chr3_2:9195446-9195465 | Msa0394530:intron | 35.0% |
| GTTGTCTGCTTCAAAACAAA+GGG | + | chr3_2:9195568-9195587 | None:intergenic | 35.0% | |
| !!! | GTTTGCAAAGCTTTTGAGTT+TGG | + | chr3_2:9195590-9195609 | None:intergenic | 35.0% |
| ACAGAAAACAACAGCTATAG+CGG | + | chr3_2:9195690-9195709 | None:intergenic | 35.0% | |
| !! | CCAACAATTGGCTTTATACT+TGG | + | chr3_2:9195793-9195812 | None:intergenic | 35.0% |
| CCAAGTATAAAGCCAATTGT+TGG | - | chr3_2:9195790-9195809 | Msa0394530:intron | 35.0% | |
| TGTAGTAGTGTTGTCGAATA+CGG | + | chr3_2:9195966-9195985 | None:intergenic | 35.0% | |
| TATTCGACAACACTACTACA+AGG | - | chr3_2:9195966-9195985 | Msa0394530:intron | 35.0% | |
| ! | TGCCAAAGAGTTTGGATTTT+TGG | - | chr3_2:9196110-9196129 | Msa0394530:intron | 35.0% |
| ATGTATAAGCTGACACAACT+AGG | - | chr3_2:9196174-9196193 | Msa0394530:intron | 35.0% | |
| AAAACACTCGGAATGTAAAC+TGG | + | chr3_2:9196201-9196220 | None:intergenic | 35.0% | |
| CACTAAACAAACAAATGGTG+AGG | - | chr3_2:9196275-9196294 | Msa0394530:intron | 35.0% | |
| AATGAAATTCAGCCAAATGC+AGG | - | chr3_2:9196315-9196334 | Msa0394530:intron | 35.0% | |
| ! | GCATTATCATCACTTTGAGA+AGG | - | chr3_2:9196371-9196390 | Msa0394530:intron | 35.0% |
| !!! | CAAGGCTTGTTGTTTTTCAA+TGG | + | chr3_2:9196418-9196437 | None:intergenic | 35.0% |
| CATTGAAAAACAACAAGCCT+TGG | - | chr3_2:9196416-9196435 | Msa0394530:intron | 35.0% | |
| CTAATGTAACAGAGGATATG+TGG | + | chr3_2:9196622-9196641 | None:intergenic | 35.0% | |
| !! | CTTCCTTTTCAAGACTCTTT+TGG | + | chr3_2:9196780-9196799 | None:intergenic | 35.0% |
| ! | AAGGATGACTTTAGAAGATG+TGG | - | chr3_2:9196805-9196824 | Msa0394530:intron | 35.0% |
| GGGAATGCTGAGAAAAATTT+AGG | - | chr3_2:9196872-9196891 | Msa0394530:intron | 35.0% | |
| !! | TGATAGGTTGATCTGTGATT+TGG | - | chr3_2:9196940-9196959 | Msa0394530:intron | 35.0% |
| CTGCTTGTGCTAAAAATGAT+TGG | - | chr3_2:9197314-9197333 | Msa0394530:intron | 35.0% | |
| !! | AGACTTGTTAACACATTTGC+AGG | + | chr3_2:9197361-9197380 | None:intergenic | 35.0% |
| ATGACTATGTGTTGAAACGA+TGG | - | chr3_2:9197399-9197418 | Msa0394530:intron | 35.0% | |
| TATGTGTTGAAACGATGGTT+TGG | - | chr3_2:9197404-9197423 | Msa0394530:intron | 35.0% | |
| AACAGAAGTTATGAATCGCA+CGG | + | chr3_2:9197693-9197712 | None:intergenic | 35.0% | |
| ! | GCGATTCATAACTTCTGTTT+TGG | - | chr3_2:9197694-9197713 | Msa0394530:CDS | 35.0% |
| GCATAATGTATACAAGGTTC+GGG | - | chr3_2:9198018-9198037 | Msa0394530:intron | 35.0% | |
| CATAATGTATACAAGGTTCG+GGG | - | chr3_2:9198019-9198038 | Msa0394530:intron | 35.0% | |
| TTGCAATTTCTCTGCATTCA+GGG | + | chr3_2:9198511-9198530 | None:intergenic | 35.0% | |
| TTTGCAATTTCTCTGCATTC+AGG | + | chr3_2:9198512-9198531 | None:intergenic | 35.0% | |
| CAAATCTGTTGGTCAATTTC+AGG | - | chr3_2:9198547-9198566 | Msa0394530:CDS | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | - | chr3_2:9198597-9198616 | Msa0394530:intron | 35.0% | |
| ATTGCTAAATAGTCCCTGAA+TGG | + | chr3_2:9198660-9198679 | None:intergenic | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | + | chr3_2:9198859-9198878 | None:intergenic | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | + | chr3_2:9198860-9198879 | None:intergenic | 35.0% | |
| ! | TTTTATCAAGTCACACCTCA+AGG | - | chr3_2:9198871-9198890 | Msa0394530:intron | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | + | chr3_2:9198889-9198908 | None:intergenic | 35.0% | |
| AGTTATAATGAGAGGATGAG+AGG | - | chr3_2:9199137-9199156 | Msa0394530:intron | 35.0% | |
| GAGGATGAGAGGAATTAATT+TGG | - | chr3_2:9199148-9199167 | Msa0394530:intron | 35.0% | |
| GTTTCTTCTTCTTCTTCTCA+TGG | - | chr3_2:9199301-9199320 | Msa0394530:intron | 35.0% | |
| AAACAAACATGCAGATCGAT+AGG | - | chr3_2:9199450-9199469 | Msa0394530:intron | 35.0% | |
| AAACAAACATGCAGATCGAT+AGG | - | chr3_2:9199450-9199469 | Msa0394530:intron | 35.0% | |
| AAACAAACATGCAGATCGAT+AGG | - | chr3_2:9199450-9199469 | Msa0394530:intron | 35.0% | |
| TCAAACACTCTTGCAATGTA+TGG | - | chr3_2:9200136-9200155 | Msa0394530:intron | 35.0% | |
| TAATTGAAAAAGAGGCTACG+TGG | + | chr3_2:9200164-9200183 | None:intergenic | 35.0% | |
| CAATTTGTAGTGTATGTCGA+CGG | + | chr3_2:9200373-9200392 | None:intergenic | 35.0% | |
| TCCATAATTTCAGTCCATAG+CGG | + | chr3_2:9200456-9200475 | None:intergenic | 35.0% | |
| ! | CCATTTTGTGTACGTACATG+AGG | + | chr3_2:9194166-9194185 | None:intergenic | 40.0% |
| CCTCATGTACGTACACAAAA+TGG | - | chr3_2:9194163-9194182 | Msa0394530:CDS | 40.0% | |
| CTAAGCTACCAGTTACAGTT+TGG | - | chr3_2:9194245-9194264 | Msa0394530:intron | 40.0% | |
| AAGCTACCAGTTACAGTTTG+GGG | - | chr3_2:9194247-9194266 | Msa0394530:intron | 40.0% | |
| GTATGTTTATGGTCAGCACT+TGG | + | chr3_2:9194313-9194332 | None:intergenic | 40.0% | |
| ACCCGTTATCAACTTGCAAT+TGG | - | chr3_2:9194331-9194350 | Msa0394530:intron | 40.0% | |
| !! | GCCAATTGCAAGTTGATAAC+GGG | + | chr3_2:9194335-9194354 | None:intergenic | 40.0% |
| GCTAGCAGACAATTGAAAAG+AGG | - | chr3_2:9194549-9194568 | Msa0394530:intron | 40.0% | |
| AGAGTTATCACACGGAAGTA+AGG | + | chr3_2:9194873-9194892 | None:intergenic | 40.0% | |
| TGGTGACTTCAATTGCCTTT+AGG | - | chr3_2:9194975-9194994 | Msa0394530:intron | 40.0% | |
| GTCAGAGTTGCTTGAAACTA+TGG | - | chr3_2:9195116-9195135 | Msa0394530:intron | 40.0% | |
| ! | GAGCACTGTCTCAAGAAAAT+TGG | + | chr3_2:9195233-9195252 | None:intergenic | 40.0% |
| ! | CTTGAGACAGTGCTCTTTTA+TGG | - | chr3_2:9195238-9195257 | Msa0394530:intron | 40.0% |
| ! | AGACAGTGCTCTTTTATGGA+TGG | - | chr3_2:9195242-9195261 | Msa0394530:intron | 40.0% |
| AGAATCATACCTGACTCAAG+TGG | + | chr3_2:9195277-9195296 | None:intergenic | 40.0% | |
| GTTGATCTTAATGGAGGAAC+AGG | - | chr3_2:9195377-9195396 | Msa0394530:intron | 40.0% | |
| GGTTGTCTGCTTCAAAACAA+AGG | + | chr3_2:9195569-9195588 | None:intergenic | 40.0% | |
| GAAATCAACTTCAACTCTCC+TGG | - | chr3_2:9196000-9196019 | Msa0394530:intron | 40.0% | |
| TCATCAGAAAGAAGCAATCC+AGG | + | chr3_2:9196021-9196040 | None:intergenic | 40.0% | |
| GGATTGCTTCTTTCTGATGA+AGG | - | chr3_2:9196021-9196040 | Msa0394530:intron | 40.0% | |
| ACTTTGGCATGGATGACATA+GGG | - | chr3_2:9196061-9196080 | Msa0394530:intron | 40.0% | |
| !! | TAGTCGAGCCTAATTTTGGT+TGG | + | chr3_2:9196138-9196157 | None:intergenic | 40.0% |
| AAAATTAGGCTCGACTACGA+GGG | - | chr3_2:9196141-9196160 | Msa0394530:intron | 40.0% | |
| CCATTTGCAAAGAACTGATG+CGG | - | chr3_2:9196347-9196366 | Msa0394530:intron | 40.0% | |
| !!! | GGCTTGTTGTTTTTCAATGG+AGG | + | chr3_2:9196415-9196434 | None:intergenic | 40.0% |
| ! | GAATGGTTTTTGACGTACCA+AGG | + | chr3_2:9196436-9196455 | None:intergenic | 40.0% |
| !! | TAGGTTGATCTGTGATTTGG+AGG | - | chr3_2:9196943-9196962 | Msa0394530:intron | 40.0% |
| TGTCTGACATACATCTTGGT+TGG | + | chr3_2:9196974-9196993 | None:intergenic | 40.0% | |
| GATGTGTCTGACATACATCT+TGG | + | chr3_2:9196978-9196997 | None:intergenic | 40.0% | |
| !!! | CTTTTGTTGTTTATTGGCCG+CGG | + | chr3_2:9197000-9197019 | None:intergenic | 40.0% |
| AAAATGATTGGGATCTCGCT+CGG | - | chr3_2:9197326-9197345 | Msa0394530:intron | 40.0% | |
| ACAGAAGTTATGAATCGCAC+GGG | + | chr3_2:9197692-9197711 | None:intergenic | 40.0% | |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3_2:9198464-9198483 | Msa0394530:CDS | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3_2:9198465-9198484 | Msa0394530:CDS | 40.0% |
| GACTATTCCTTTCCCATTCA+GGG | + | chr3_2:9198480-9198499 | None:intergenic | 40.0% | |
| TGACTATTCCTTTCCCATTC+AGG | + | chr3_2:9198481-9198500 | None:intergenic | 40.0% | |
| TCAGGGACTAAAGTGACTAA+CGG | - | chr3_2:9198565-9198584 | Msa0394530:CDS | 40.0% | |
| ACTAACGGAGTGTACATTCA+GGG | - | chr3_2:9198580-9198599 | Msa0394530:CDS | 40.0% | |
| CAGGGACTAAATTGACTAAC+GGG | - | chr3_2:9198598-9198617 | Msa0394530:intron | 40.0% | |
| AGGGACTAAATTGACTAACG+GGG | - | chr3_2:9198599-9198618 | Msa0394530:intron | 40.0% | |
| ACTAACGGGGTCTACATTTA+TGG | - | chr3_2:9198612-9198631 | Msa0394530:intron | 40.0% | |
| ACTAACAGTGTCTCCATTCA+GGG | - | chr3_2:9198644-9198663 | Msa0394530:intron | 40.0% | |
| CTTTAGTCCCTGAATAGGAA+AGG | + | chr3_2:9198714-9198733 | None:intergenic | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+AGG | + | chr3_2:9198465-9198484 | None:intergenic | 40.0% |
| TTATGTTACAAGCCACCCTT+TGG | - | chr3_2:9198841-9198860 | Msa0394530:intron | 40.0% | |
| GAAAGAGTGGAGAAGATGAA+AGG | + | chr3_2:9199243-9199262 | None:intergenic | 40.0% | |
| AGAGAAAGAGAACGAAAGAG+TGG | + | chr3_2:9199256-9199275 | None:intergenic | 40.0% | |
| TTTCGTTCTCTTTCTCTCAC+AGG | - | chr3_2:9199259-9199278 | Msa0394530:intron | 40.0% | |
| ! | ATAGTGAAGCTTTGACCAAC+TGG | + | chr3_2:9199338-9199357 | None:intergenic | 40.0% |
| ! | ATAGTGAAGCTTTGACCAAC+TGG | + | chr3_2:9199338-9199357 | None:intergenic | 40.0% |
| ! | ATAGTGAAGCTTTGACCAAC+TGG | + | chr3_2:9199338-9199357 | None:intergenic | 40.0% |
| TACCTATTAACCTGCTCAAC+CGG | - | chr3_2:9200186-9200205 | Msa0394530:CDS | 40.0% | |
| TAAATGTAAACCGGTTGAGC+AGG | + | chr3_2:9200199-9200218 | None:intergenic | 40.0% | |
| ! | GTTTTCAAACATCTCCTCAC+CGG | + | chr3_2:9200493-9200512 | None:intergenic | 40.0% |
| TTGCAGCACTCATACGTCTA+AGG | - | chr3_2:9194287-9194306 | Msa0394530:intron | 45.0% | |
| !! | TGTCTGCTAGCACTGATGAA+GGG | + | chr3_2:9194540-9194559 | None:intergenic | 45.0% |
| !! | TTGTCTGCTAGCACTGATGA+AGG | + | chr3_2:9194541-9194560 | None:intergenic | 45.0% |
| TCCCACTTTGGCTGAATCTA+TGG | - | chr3_2:9194944-9194963 | Msa0394530:intron | 45.0% | |
| GCCATAGATTCAGCCAAAGT+GGG | + | chr3_2:9194948-9194967 | None:intergenic | 45.0% | |
| AGCCATAGATTCAGCCAAAG+TGG | + | chr3_2:9194949-9194968 | None:intergenic | 45.0% | |
| ! | TGGCTGAATCTATGGCTTTG+AGG | - | chr3_2:9194952-9194971 | Msa0394530:intron | 45.0% |
| !! | CTGAATCTATGGCTTTGAGG+TGG | - | chr3_2:9194955-9194974 | Msa0394530:intron | 45.0% |
| TGGACACCTATGCAAATACG+TGG | + | chr3_2:9195213-9195232 | None:intergenic | 45.0% | |
| ! | ATGATCTTGCCACTTGAGTC+AGG | - | chr3_2:9195265-9195284 | Msa0394530:intron | 45.0% |
| GTATAAGCGGTACGAACTCA+AGG | + | chr3_2:9195525-9195544 | None:intergenic | 45.0% | |
| CTATGTCACACACTTTGGCA+TGG | - | chr3_2:9196050-9196069 | Msa0394530:intron | 45.0% | |
| CACTTTGGCATGGATGACAT+AGG | - | chr3_2:9196060-9196079 | Msa0394530:intron | 45.0% | |
| CTTTGGCATGGATGACATAG+GGG | - | chr3_2:9196062-9196081 | Msa0394530:intron | 45.0% | |
| ! | GATGACATAGGGGTGTACAT+GGG | - | chr3_2:9196072-9196091 | Msa0394530:intron | 45.0% |
| ! | ATAGGGGTGTACATGGGTAA+TGG | - | chr3_2:9196078-9196097 | Msa0394530:intron | 45.0% |
| ! | CTCGTAGTCGAGCCTAATTT+TGG | + | chr3_2:9196142-9196161 | None:intergenic | 45.0% |
| CAAAATTAGGCTCGACTACG+AGG | - | chr3_2:9196140-9196159 | Msa0394530:intron | 45.0% | |
| GGTTCTTCTTTAACTCGTGC+GGG | + | chr3_2:9196225-9196244 | None:intergenic | 45.0% | |
| GGGTTCTTCTTTAACTCGTG+CGG | + | chr3_2:9196226-9196245 | None:intergenic | 45.0% | |
| CAAATGGTGAGGATGAAGCA+AGG | - | chr3_2:9196286-9196305 | Msa0394530:intron | 45.0% | |
| CCGCATCAGTTCTTTGCAAA+TGG | + | chr3_2:9196350-9196369 | None:intergenic | 45.0% | |
| AATTGCAAGGTTAGGACTGC+TGG | - | chr3_2:9196845-9196864 | Msa0394530:intron | 45.0% | |
| TATCACCCTCTTGTAAGTCG+CGG | + | chr3_2:9196925-9196944 | None:intergenic | 45.0% | |
| CTGACATACATCTTGGTTGG+TGG | + | chr3_2:9196971-9196990 | None:intergenic | 45.0% | |
| ATGTATGTCAGACACATCCG+CGG | - | chr3_2:9196980-9196999 | Msa0394530:intron | 45.0% | |
| CGCGGCCAATAAACAACAAA+AGG | - | chr3_2:9196998-9197017 | Msa0394530:intron | 45.0% | |
| CTTTAGTCCCTGAATGGGAA+AGG | - | chr3_2:9198470-9198489 | Msa0394530:CDS | 45.0% | |
| GACTAACGGAGTGTACATTC+AGG | - | chr3_2:9198579-9198598 | Msa0394530:CDS | 45.0% | |
| GACTAACAGTGTCTCCATTC+AGG | - | chr3_2:9198643-9198662 | Msa0394530:intron | 45.0% | |
| ! | AGGAAAGGAGTCGTCACTTT+AGG | + | chr3_2:9198699-9198718 | None:intergenic | 45.0% |
| TGACGACTCCTTTCCTATTC+AGG | - | chr3_2:9198703-9198722 | Msa0394530:intron | 45.0% | |
| GACGACTCCTTTCCTATTCA+GGG | - | chr3_2:9198704-9198723 | Msa0394530:intron | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr3_2:9198856-9198875 | None:intergenic | 45.0% | |
| AGAGTGGAGAAGATGAAAGG+TGG | + | chr3_2:9199240-9199259 | None:intergenic | 45.0% | |
| ATGTGATGAATCTCCTGCAG+AGG | - | chr3_2:9200081-9200100 | Msa0394530:intron | 45.0% | |
| TGTTAGTAGCATTCCTCTGC+AGG | + | chr3_2:9200097-9200116 | None:intergenic | 45.0% | |
| AACCGGTTGAGCAGGTTAAT+AGG | + | chr3_2:9200191-9200210 | None:intergenic | 45.0% | |
| AACAAAGACCACCGCTCAAT+CGG | - | chr3_2:9200309-9200328 | Msa0394530:CDS | 45.0% | |
| ACTGTAGACTTCCGATTGAG+CGG | + | chr3_2:9200323-9200342 | None:intergenic | 45.0% | |
| !! | AGTTGGTGTTTTCGAGCATC+CGG | - | chr3_2:9200394-9200413 | Msa0394530:CDS | 45.0% |
| ! | GCCGCTATGGACTGAAATTA+TGG | - | chr3_2:9200452-9200471 | Msa0394530:CDS | 45.0% |
| !!! | TATTAAATAAAATTTTGATT+TGG | - | chr3_2:9198237-9198256 | Msa0394530:CDS | 5.0% |
| GCATGACCCCAAACTGTAAC+TGG | + | chr3_2:9194256-9194275 | None:intergenic | 50.0% | |
| TCAGCCAAAGTGGGAAAGTG+AGG | + | chr3_2:9194939-9194958 | None:intergenic | 50.0% | |
| ! | GGATGACATAGGGGTGTACA+TGG | - | chr3_2:9196071-9196090 | Msa0394530:intron | 50.0% |
| ACTCGTGCGGGTAAAACACT+CGG | + | chr3_2:9196213-9196232 | None:intergenic | 50.0% | |
| TGGTTGACAGCACCTGCATT+TGG | + | chr3_2:9196330-9196349 | None:intergenic | 50.0% | |
| GTAGACCGCGACTTACAAGA+GGG | - | chr3_2:9196917-9196936 | Msa0394530:intron | 50.0% | |
| GCGACTTACAAGAGGGTGAT+AGG | - | chr3_2:9196924-9196943 | Msa0394530:intron | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | - | chr3_2:9198844-9198863 | Msa0394530:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_2:9199082-9199101 | Msa0394530:intron | 50.0% | |
| GGAATGAGTTTCTGTGGAGG+AGG | + | chr3_2:9200348-9200367 | None:intergenic | 50.0% | |
| GCAGGAATGAGTTTCTGTGG+AGG | + | chr3_2:9200351-9200370 | None:intergenic | 50.0% | |
| ACGGCAGGAATGAGTTTCTG+TGG | + | chr3_2:9200354-9200373 | None:intergenic | 50.0% | |
| TTGTAGTGTATGTCGACGGC+AGG | + | chr3_2:9200369-9200388 | None:intergenic | 50.0% | |
| ! | TCTTCTTCGTTTCGGTTCGC+CGG | + | chr3_2:9200416-9200435 | None:intergenic | 50.0% |
| AATTTCAGTCCATAGCGGCG+AGG | + | chr3_2:9200451-9200470 | None:intergenic | 50.0% | |
| ATGGAAGTTAATCCCGACGC+CGG | - | chr3_2:9200471-9200490 | Msa0394530:CDS | 50.0% | |
| GCAGCCTCACTTTCCCACTT+TGG | - | chr3_2:9194932-9194951 | Msa0394530:intron | 55.0% | |
| AAGGTTAGGACTGCTGGCAG+AGG | - | chr3_2:9196851-9196870 | Msa0394530:intron | 55.0% | |
| AGGTTAGGACTGCTGGCAGA+GGG | - | chr3_2:9196852-9196871 | Msa0394530:intron | 55.0% | |
| CGTAGACCGCGACTTACAAG+AGG | - | chr3_2:9196916-9196935 | Msa0394530:intron | 55.0% | |
| AATCCACCTCGTGCGAAGCA+CGG | - | chr3_2:9197786-9197805 | Msa0394530:intron | 55.0% | |
| ! | CGAAGCACGGGTTGACAACT+AGG | - | chr3_2:9197799-9197818 | Msa0394530:intron | 55.0% |
| GTAGACTTCCGATTGAGCGG+TGG | + | chr3_2:9200320-9200339 | None:intergenic | 55.0% | |
| ! | GTTTTCTCTCCTCGCCGCTA+TGG | - | chr3_2:9200439-9200458 | Msa0394530:CDS | 55.0% |
| AAACATCTCCTCACCGGCGT+CGG | + | chr3_2:9200487-9200506 | None:intergenic | 55.0% | |
| ATCCACCTCGTGCGAAGCAC+GGG | - | chr3_2:9197787-9197806 | Msa0394530:intron | 60.0% | |
| AGTTAATCCCGACGCCGGTG+AGG | - | chr3_2:9200476-9200495 | Msa0394530:CDS | 60.0% | |
| AACATCTCCTCACCGGCGTC+GGG | + | chr3_2:9200486-9200505 | None:intergenic | 60.0% | |
| AACCCGTGCTTCGCACGAGG+TGG | + | chr3_2:9197792-9197811 | None:intergenic | 65.0% | |
| GTCAACCCGTGCTTCGCACG+AGG | + | chr3_2:9197795-9197814 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 9194004 | 9200554 | 9194004 | ID=Msa0394530;Name=Msa0394530 |
| chr3_2 | mRNA | 9194004 | 9200554 | 9194004 | ID=Msa0394530-mRNA-1;Parent=Msa0394530;Name=Msa0394530-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.25|1|1|4|0|439 |
| chr3_2 | exon | 9200162 | 9200554 | 9200162 | ID=Msa0394530-mRNA-1:exon:2477;Parent=Msa0394530-mRNA-1 |
| chr3_2 | exon | 9198121 | 9198603 | 9198121 | ID=Msa0394530-mRNA-1:exon:2476;Parent=Msa0394530-mRNA-1 |
| chr3_2 | exon | 9197577 | 9197800 | 9197577 | ID=Msa0394530-mRNA-1:exon:2475;Parent=Msa0394530-mRNA-1 |
| chr3_2 | exon | 9194004 | 9194223 | 9194004 | ID=Msa0394530-mRNA-1:exon:2474;Parent=Msa0394530-mRNA-1 |
| chr3_2 | CDS | 9200162 | 9200554 | 9200162 | ID=Msa0394530-mRNA-1:cds;Parent=Msa0394530-mRNA-1 |
| chr3_2 | CDS | 9198121 | 9198603 | 9198121 | ID=Msa0394530-mRNA-1:cds;Parent=Msa0394530-mRNA-1 |
| chr3_2 | CDS | 9197577 | 9197800 | 9197577 | ID=Msa0394530-mRNA-1:cds;Parent=Msa0394530-mRNA-1 |
| chr3_2 | CDS | 9194004 | 9194223 | 9194004 | ID=Msa0394530-mRNA-1:cds;Parent=Msa0394530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
