Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164520 | XP_003625374.2 | 93.856 | 472 | 8 | 3 | 1 | 471 | 1 | 452 | 0.0 | 883 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164520 | sp|Q9FME2|NTF2_ARATH | 34.038 | 426 | 210 | 15 | 1 | 412 | 1 | 369 | 2.20e-46 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164520 | A0A396H4Q7 | 93.856 | 472 | 8 | 3 | 1 | 471 | 1 | 452 | 0.0 | 883 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016440 | Msa1164520 | 0.804910 | 1.721645e-49 | -8.615850e-47 |
| Msa0610380 | Msa1164520 | 0.808945 | 2.412822e-50 | -8.615850e-47 |
| Msa0621190 | Msa1164520 | 0.806871 | 6.664007e-50 | -8.615850e-47 |
| Msa0650910 | Msa1164520 | 0.814718 | 1.336080e-51 | -8.615850e-47 |
| Msa0733670 | Msa1164520 | 0.809413 | 1.915992e-50 | -8.615850e-47 |
| Msa0188740 | Msa1164520 | 0.811323 | 7.414190e-51 | -8.615850e-47 |
| Msa1037030 | Msa1164520 | 0.982598 | 1.660350e-155 | -8.615850e-47 |
| Msa0341520 | Msa1164520 | -0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa1164520 | Msa1403520 | 0.805602 | 1.233488e-49 | -8.615850e-47 |
| Msa1164520 | Msa1465890 | 0.817500 | 3.193807e-52 | -8.615850e-47 |
| Msa0540160 | Msa1164520 | -0.820116 | 8.131480e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164520 | MtrunA17_Chr7g0262051 | 93.856 | 472 | 8 | 3 | 1 | 471 | 1 | 452 | 0.0 | 883 |
| Msa1164520 | MtrunA17_Chr1g0168741 | 45.798 | 476 | 212 | 17 | 8 | 471 | 9 | 450 | 3.79e-114 | 344 |
| Msa1164520 | MtrunA17_Chr7g0219091 | 32.735 | 446 | 238 | 16 | 13 | 445 | 2 | 398 | 1.41e-45 | 165 |
| Msa1164520 | MtrunA17_Chr7g0235151 | 32.377 | 488 | 235 | 22 | 13 | 463 | 15 | 444 | 1.93e-45 | 166 |
| Msa1164520 | MtrunA17_Chr4g0061541 | 33.590 | 390 | 208 | 14 | 13 | 395 | 19 | 364 | 3.31e-39 | 145 |
| Msa1164520 | MtrunA17_Chr4g0043211 | 31.542 | 428 | 212 | 18 | 13 | 412 | 15 | 389 | 1.63e-36 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164520 | AT5G43960.1 | 52.083 | 432 | 182 | 8 | 10 | 437 | 8 | 418 | 6.96e-121 | 361 |
| Msa1164520 | AT5G43960.2 | 50.815 | 368 | 168 | 7 | 74 | 437 | 1 | 359 | 4.32e-94 | 290 |
| Msa1164520 | AT3G25150.1 | 31.034 | 435 | 231 | 14 | 13 | 432 | 19 | 399 | 6.74e-49 | 175 |
| Msa1164520 | AT3G25150.2 | 31.881 | 436 | 228 | 15 | 12 | 432 | 117 | 498 | 2.41e-48 | 175 |
| Msa1164520 | AT5G60980.2 | 34.038 | 426 | 210 | 15 | 1 | 412 | 1 | 369 | 2.23e-47 | 170 |
| Msa1164520 | AT5G60980.3 | 34.038 | 426 | 210 | 15 | 1 | 412 | 1 | 369 | 2.23e-47 | 170 |
| Msa1164520 | AT5G60980.4 | 34.038 | 426 | 209 | 16 | 1 | 412 | 1 | 368 | 4.47e-46 | 166 |
| Msa1164520 | AT5G60980.1 | 34.038 | 426 | 209 | 16 | 1 | 412 | 1 | 368 | 4.47e-46 | 166 |
| Msa1164520 | AT5G48650.1 | 30.889 | 450 | 250 | 16 | 8 | 432 | 11 | 424 | 1.97e-41 | 154 |
| Msa1164520 | AT2G03640.2 | 27.742 | 465 | 252 | 14 | 13 | 464 | 15 | 408 | 1.35e-31 | 126 |
| Msa1164520 | AT1G13730.2 | 26.889 | 450 | 236 | 14 | 13 | 453 | 15 | 380 | 8.36e-31 | 124 |
| Msa1164520 | AT1G13730.1 | 26.889 | 450 | 236 | 14 | 13 | 453 | 15 | 380 | 8.36e-31 | 124 |
| Msa1164520 | AT2G03640.5 | 27.097 | 465 | 254 | 14 | 13 | 464 | 15 | 407 | 2.35e-30 | 122 |
| Msa1164520 | AT2G03640.1 | 27.097 | 465 | 254 | 14 | 13 | 464 | 15 | 407 | 2.35e-30 | 122 |
| Msa1164520 | AT2G03640.3 | 27.097 | 465 | 254 | 14 | 13 | 464 | 15 | 407 | 2.35e-30 | 122 |
| Msa1164520 | AT2G03640.4 | 27.160 | 405 | 225 | 10 | 13 | 412 | 15 | 354 | 8.87e-28 | 115 |
| Msa1164520 | AT1G69250.1 | 26.136 | 440 | 239 | 18 | 5 | 426 | 4 | 375 | 8.06e-24 | 103 |
Find 126 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGTGAAACTGCGATTT+AGG | 0.247174 | 7_4:-56229118 | None:intergenic |
| AATGGGTGTTTACAGGAAAT+TGG | 0.247484 | 7_4:+56231884 | Msa1164520:intron |
| TGCAACTATGGCTTCGTATC+AGG | 0.247670 | 7_4:+56229212 | Msa1164520:exon |
| GCTTCTCCCATTCAACTTGC+TGG | 0.277795 | 7_4:+56232877 | Msa1164520:CDS |
| AGACAACGCTGCTTGGCCTT+TGG | 0.300125 | 7_4:-56231037 | None:intergenic |
| TGCCGAAATTCTTAAATTCC+TGG | 0.300457 | 7_4:-56231748 | None:intergenic |
| AGTTGCTGCTGCTGCTGTTC+AGG | 0.304754 | 7_4:-56230713 | None:intergenic |
| GACCAGGAATTTAAGAATTT+CGG | 0.312847 | 7_4:+56231746 | Msa1164520:CDS |
| TCTGCATATGTTTCAGAGTC+TGG | 0.329758 | 7_4:+56231189 | Msa1164520:CDS |
| TTTCTGGATCTGTGCAACTA+TGG | 0.339836 | 7_4:+56229200 | Msa1164520:exon |
| GCAGGTTGGTTCTTACTTTG+TGG | 0.349830 | 7_4:+56229356 | Msa1164520:intron |
| CTTCGCTCCTCTATGTATAT+TGG | 0.358616 | 7_4:-56232904 | None:intergenic |
| CGATCAATTCTCTGGACTCT+TGG | 0.361049 | 7_4:+56230066 | Msa1164520:CDS |
| CTTCCTTGCTCCTCAGGAGA+AGG | 0.362660 | 7_4:+56230169 | Msa1164520:CDS |
| CCTTCTGTGGTTTCATGAAA+AGG | 0.367778 | 7_4:+56233460 | Msa1164520:three_prime_UTR |
| CAGGTTGGTTCTTACTTTGT+GGG | 0.371768 | 7_4:+56229357 | Msa1164520:intron |
| AACCTTCTTCCTTGCTCCTC+AGG | 0.377383 | 7_4:+56230163 | Msa1164520:CDS |
| TGGCACACAAAATGCGCTTC+AGG | 0.380260 | 7_4:+56231943 | Msa1164520:CDS |
| TAAATTAATAGATAGTTGAT+TGG | 0.396393 | 7_4:+56229967 | Msa1164520:intron |
| GATGCTCCTAGAGGGCGTTT+TGG | 0.400201 | 7_4:+56233277 | Msa1164520:CDS |
| GACTCTTCCACAGGAGCAGC+GGG | 0.409545 | 7_4:-56230833 | None:intergenic |
| AGATGTAGTGCATCCGAATC+TGG | 0.418037 | 7_4:+56230229 | Msa1164520:CDS |
| GGAGTGATTGTAATGGTTAC+AGG | 0.426588 | 7_4:+56230095 | Msa1164520:CDS |
| TTAAGAACAAAGATGTCAAT+AGG | 0.426634 | 7_4:+56230123 | Msa1164520:CDS |
| GATCAATTCTCTGGACTCTT+GGG | 0.429277 | 7_4:+56230067 | Msa1164520:CDS |
| GGAGGAAGGGGAAGAGGCAG+AGG | 0.436801 | 7_4:+56233241 | Msa1164520:intron |
| TAAAAGTGATAAACATGATC+AGG | 0.437939 | 7_4:-56229408 | None:intergenic |
| CATGCTTGAATATGTTATCA+AGG | 0.439419 | 7_4:+56233407 | Msa1164520:three_prime_UTR |
| AAATTAATAGATAGTTGATT+GGG | 0.444728 | 7_4:+56229968 | Msa1164520:intron |
| TGGTGGTCGTAGCTCGGGAA+GGG | 0.448174 | 7_4:+56233297 | Msa1164520:CDS |
| AGCCGGATGGAATATTCATA+AGG | 0.454672 | 7_4:+56231777 | Msa1164520:CDS |
| GATCAAGACGATCAATTCTC+TGG | 0.456876 | 7_4:+56230058 | Msa1164520:CDS |
| TAGCCTTCCTCAGCTGCCTC+AGG | 0.459871 | 7_4:-56231213 | None:intergenic |
| AACAAAATTCCCCACCTGAA+TGG | 0.461387 | 7_4:-56233587 | None:intergenic |
| ATAACCATCACCTCTTGGTC+TGG | 0.462287 | 7_4:-56233347 | None:intergenic |
| AATGAGAAAATGCGTTGAAA+GGG | 0.464001 | 7_4:+56233651 | Msa1164520:three_prime_UTR |
| GATGCCACCGGTACCAGATT+CGG | 0.472362 | 7_4:-56230242 | None:intergenic |
| GAGCTTGACTGCTGGAAAGC+AGG | 0.472708 | 7_4:-56231162 | None:intergenic |
| CTGCATATGTTTCAGAGTCT+GGG | 0.475914 | 7_4:+56231190 | Msa1164520:CDS |
| GTCTGGGCCTGAGGCAGCTG+AGG | 0.477221 | 7_4:+56231206 | Msa1164520:CDS |
| GGCGGAGATGCCTCCTGTAC+AGG | 0.478493 | 7_4:-56230776 | None:intergenic |
| TGGAGTTTGCTATGCATTTG+TGG | 0.480125 | 7_4:+56231904 | Msa1164520:CDS |
| TGATCAGGAGGAAGGGGAAG+AGG | 0.481081 | 7_4:+56233235 | Msa1164520:intron |
| GTGGAATTCGAAGACGTTGT+TGG | 0.482779 | 7_4:+56231923 | Msa1164520:CDS |
| GAGCAGCAGACAACGCTGCT+TGG | 0.485411 | 7_4:-56231044 | None:intergenic |
| CGAGTTGCACTGCTAGTGCT+TGG | 0.486128 | 7_4:-56232928 | None:intergenic |
| TTCCTTGCTCCTCAGGAGAA+GGG | 0.487353 | 7_4:+56230170 | Msa1164520:CDS |
| AGTTCGATGATTCGTGTTGA+CGG | 0.487457 | 7_4:+56229441 | Msa1164520:CDS |
| CTTCTCCCATTCAACTTGCT+GGG | 0.488153 | 7_4:+56232878 | Msa1164520:CDS |
| TAATGAGAAAATGCGTTGAA+AGG | 0.489889 | 7_4:+56233650 | Msa1164520:three_prime_UTR |
| TAATAGATAGTTGATTGGGT+TGG | 0.494937 | 7_4:+56229972 | Msa1164520:intron |
| ACCACTGACTGCTGAACAGC+AGG | 0.497270 | 7_4:-56231135 | None:intergenic |
| GGGTTCAGTTAGTGCTGCCC+AGG | 0.498131 | 7_4:+56229233 | Msa1164520:CDS |
| AACAAACTAGCAAGTCTCAA+TGG | 0.498761 | 7_4:-56233518 | None:intergenic |
| GGGCCTGAGGCAGCTGAGGA+AGG | 0.499029 | 7_4:+56231210 | Msa1164520:CDS |
| CAGATGCTGAGCTTGACTGC+TGG | 0.499052 | 7_4:-56231170 | None:intergenic |
| CTCGGGAAGGGGATATTACC+AGG | 0.503423 | 7_4:+56233309 | Msa1164520:CDS |
| ACCCTTATGAATATTCCATC+CGG | 0.504885 | 7_4:-56231779 | None:intergenic |
| GAATCAAACCTTCTTCAAAT+CGG | 0.506768 | 7_4:-56231236 | None:intergenic |
| GGTGGTCGTAGCTCGGGAAG+GGG | 0.507014 | 7_4:+56233298 | Msa1164520:CDS |
| TGAAGATAACCATCACCTCT+TGG | 0.508776 | 7_4:-56233352 | None:intergenic |
| GTCTCTTGATCAGGAGGAAG+GGG | 0.509603 | 7_4:+56233229 | Msa1164520:intron |
| GAAGGCTACCGATTTGAAGA+AGG | 0.513680 | 7_4:+56231228 | Msa1164520:CDS |
| TGGTCGCCCAGCAAGTTGAA+TGG | 0.515334 | 7_4:-56232884 | None:intergenic |
| CTCCTGAGGAGCAAGGAAGA+AGG | 0.516939 | 7_4:-56230165 | None:intergenic |
| GCAACTATGGCTTCGTATCA+GGG | 0.517260 | 7_4:+56229213 | Msa1164520:exon |
| GAATTTCGGCAGAATTAAGC+CGG | 0.519034 | 7_4:+56231760 | Msa1164520:CDS |
| TTGGTGGTCGTAGCTCGGGA+AGG | 0.520627 | 7_4:+56233296 | Msa1164520:CDS |
| GGTCGCCCAGCAAGTTGAAT+GGG | 0.520774 | 7_4:-56232883 | None:intergenic |
| GCCGGATGGAATATTCATAA+GGG | 0.523010 | 7_4:+56231778 | Msa1164520:CDS |
| CGACCACCAAAACGCCCTCT+AGG | 0.524390 | 7_4:-56233283 | None:intergenic |
| TGGAGTAGTCTGAAGTATCC+TGG | 0.526372 | 7_4:-56233327 | None:intergenic |
| CGCCCTCTAGGAGCATCTGT+TGG | 0.526766 | 7_4:-56233271 | None:intergenic |
| GGTAGATGAAACTCCTGTAC+AGG | 0.542907 | 7_4:+56230763 | Msa1164520:CDS |
| CTCTTCCACAGGAGCAGCGG+GGG | 0.542970 | 7_4:-56230831 | None:intergenic |
| TGAGACTGCATCTGATGTCT+TGG | 0.544441 | 7_4:+56229473 | Msa1164520:CDS |
| ATGCTTGAATATGTTATCAA+GGG | 0.544462 | 7_4:+56233408 | Msa1164520:three_prime_UTR |
| ACGTCTCTTGATCAGGAGGA+AGG | 0.549916 | 7_4:+56233227 | Msa1164520:intron |
| ATTGGCCTCATGTCGGATTG+TGG | 0.550171 | 7_4:+56233616 | Msa1164520:three_prime_UTR |
| CGTCTCTTGATCAGGAGGAA+GGG | 0.552237 | 7_4:+56233228 | Msa1164520:intron |
| TTCGGCAGAATTAAGCCGGA+TGG | 0.553328 | 7_4:+56231764 | Msa1164520:CDS |
| TCTTCAGCGTGGTTCACGAT+AGG | 0.554535 | 7_4:+56233369 | Msa1164520:CDS |
| TCCTCAAAAGACTCTTCCAC+AGG | 0.555708 | 7_4:-56230842 | None:intergenic |
| TCAGCTTCAGTAATATCAGC+AGG | 0.556106 | 7_4:-56231719 | None:intergenic |
| TCTCTGGACTCTTGGGATGG+AGG | 0.559179 | 7_4:+56230074 | Msa1164520:CDS |
| AATATTCATAAGGGTCCGAC+AGG | 0.561099 | 7_4:+56231787 | Msa1164520:CDS |
| GGATGGAGGAGTGATTGTAA+TGG | 0.568146 | 7_4:+56230088 | Msa1164520:CDS |
| GCCTGCTGTTCAGCAGTCAG+TGG | 0.570838 | 7_4:+56231134 | Msa1164520:CDS |
| TATTTATATTGGCCTCATGT+CGG | 0.574224 | 7_4:+56233609 | Msa1164520:three_prime_UTR |
| GGAAGACTATACTTGTCCAC+TGG | 0.574359 | 7_4:-56230692 | None:intergenic |
| AATTCTCTGGACTCTTGGGA+TGG | 0.583195 | 7_4:+56230071 | Msa1164520:CDS |
| AACCCTTCTCCTGAGGAGCA+AGG | 0.583492 | 7_4:-56230172 | None:intergenic |
| AGATTTCGAGACCGAAGTTG+TGG | 0.585187 | 7_4:+56230742 | Msa1164520:CDS |
| TACTCCAGACCAAGAGGTGA+TGG | 0.589299 | 7_4:+56233343 | Msa1164520:CDS |
| GTATGTGCAACATTATGCAC+TGG | 0.591139 | 7_4:-56230797 | None:intergenic |
| AGTGCATCCGAATCTGGTAC+CGG | 0.594604 | 7_4:+56230235 | Msa1164520:CDS |
| TTTATGATGCCATTCAGGTG+GGG | 0.595225 | 7_4:+56233578 | Msa1164520:three_prime_UTR |
| GAATGTTGTGGAGCATGTTG+TGG | 0.597301 | 7_4:-56231066 | None:intergenic |
| TGTTTCAGAGTCTGGGCCTG+AGG | 0.597896 | 7_4:+56231197 | Msa1164520:CDS |
| AATTTGTAGTTACGCGCCAA+AGG | 0.598248 | 7_4:+56231021 | Msa1164520:intron |
| AGACTCTTCCACAGGAGCAG+CGG | 0.601787 | 7_4:-56230834 | None:intergenic |
| AGTTTCATCTACCACAACTT+CGG | 0.605716 | 7_4:-56230753 | None:intergenic |
| TAGGTTTAGATATGAGAATG+CGG | 0.606309 | 7_4:-56229099 | None:intergenic |
| TGGTACCGGTGGCATCTGAA+AGG | 0.607544 | 7_4:+56230249 | Msa1164520:CDS |
| ATCCAACAGATGCTCCTAGA+GGG | 0.613913 | 7_4:+56233269 | Msa1164520:CDS |
| ACTATCAAAATAAGTCTCAA+CGG | 0.615930 | 7_4:-56233740 | None:intergenic |
| TTGCACAGATCCAGAAACAA+AGG | 0.618200 | 7_4:-56229194 | None:intergenic |
| AGCATCCACAATCCGACATG+AGG | 0.620556 | 7_4:-56233621 | None:intergenic |
| ACAAAATAACCCTTCTCCTG+AGG | 0.621374 | 7_4:-56230179 | None:intergenic |
| TACTGAAGCTGAGATTGACC+AGG | 0.624100 | 7_4:+56231730 | Msa1164520:CDS |
| ACTAGCAGTGCAACTCGAGG+AGG | 0.626229 | 7_4:+56232934 | Msa1164520:CDS |
| TCAATCCTTTCAGATGCCAC+CGG | 0.628826 | 7_4:-56230254 | None:intergenic |
| GTCACATGATTGTACTCTGA+AGG | 0.635660 | 7_4:-56231108 | None:intergenic |
| TGATTGTACTCTGAAGGAGG+AGG | 0.640380 | 7_4:-56231102 | None:intergenic |
| TCAGACTACTCCAGACCAAG+AGG | 0.641067 | 7_4:+56233337 | Msa1164520:CDS |
| GCAAAAGAAGCAGAAACATG+TGG | 0.644848 | 7_4:-56230284 | None:intergenic |
| TCATATAGATGATGATCCAG+TGG | 0.650234 | 7_4:+56230676 | Msa1164520:CDS |
| AGATGAAACTCCTGTACAGG+AGG | 0.655569 | 7_4:+56230766 | Msa1164520:CDS |
| ACATGATTGTACTCTGAAGG+AGG | 0.658893 | 7_4:-56231105 | None:intergenic |
| GCATCCGAATCTGGTACCGG+TGG | 0.659905 | 7_4:+56230238 | Msa1164520:CDS |
| TGGGCGACCAATATACATAG+AGG | 0.672867 | 7_4:+56232897 | Msa1164520:CDS |
| AGCACTAGCAGTGCAACTCG+AGG | 0.683770 | 7_4:+56232931 | Msa1164520:CDS |
| TATCCAACAGATGCTCCTAG+AGG | 0.683891 | 7_4:+56233268 | Msa1164520:CDS |
| TGTGCAACATTATGCACTGG+CGG | 0.693019 | 7_4:-56230794 | None:intergenic |
| ACTCTTCCACAGGAGCAGCG+GGG | 0.716262 | 7_4:-56230832 | None:intergenic |
| GGTGATGGTTATCTTCAGCG+TGG | 0.721846 | 7_4:+56233358 | Msa1164520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATAAATATTTTGTGA+GGG | - | chr7_4:56228988-56229007 | None:intergenic | 10.0% |
| !!! | TTATATATAAATATTTTGTG+AGG | - | chr7_4:56228989-56229008 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTCAATTGTTTTA+GGG | + | chr7_4:56229526-56229545 | Msa1164520:intron | 10.0% |
| !! | TTATATAAACTAAAACAAAA+AGG | - | chr7_4:56230937-56230956 | None:intergenic | 10.0% |
| !! | TAGATAATAAAACATTTATT+AGG | - | chr7_4:56232008-56232027 | None:intergenic | 10.0% |
| !!! | ATATATAAATATTTTGTGAG+GGG | - | chr7_4:56228987-56229006 | None:intergenic | 15.0% |
| !! | AAAGAAATAAATAAAAACCT+GGG | - | chr7_4:56229253-56229272 | None:intergenic | 15.0% |
| !! | TAAAGAAATAAATAAAAACC+TGG | - | chr7_4:56229254-56229273 | None:intergenic | 15.0% |
| !!! | CATTTTTTTTCAATTGTTTT+AGG | + | chr7_4:56229525-56229544 | Msa1164520:intron | 15.0% |
| !! | TAAATTAATAGATAGTTGAT+TGG | + | chr7_4:56229967-56229986 | Msa1164520:intron | 15.0% |
| !! | AAATTAATAGATAGTTGATT+GGG | + | chr7_4:56229968-56229987 | Msa1164520:intron | 15.0% |
| !!! | TCTTAGTATGAATTTTTTAT+TGG | + | chr7_4:56231263-56231282 | Msa1164520:intron | 15.0% |
| !! | GATGATTATATAGTTAATTA+TGG | + | chr7_4:56231838-56231857 | Msa1164520:intron | 15.0% |
| !!! | TTTTATGATTATTAAAGGTA+TGG | - | chr7_4:56232037-56232056 | None:intergenic | 15.0% |
| !!! | GTATGTTTTATGATTATTAA+AGG | - | chr7_4:56232042-56232061 | None:intergenic | 15.0% |
| !! | AAAGAAAATGTATATAAACA+AGG | - | chr7_4:56232620-56232639 | None:intergenic | 15.0% |
| !!! | TTTATATACATTTTCTTTGA+AGG | + | chr7_4:56232622-56232641 | Msa1164520:intron | 15.0% |
| !! | AAAACCCTAAATAGAATTTA+GGG | + | chr7_4:56229156-56229175 | Msa1164520:intron | 20.0% |
| !! | AAAACCCTAAATTCTATTTA+GGG | - | chr7_4:56229163-56229182 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTATGTGGATTCT+TGG | + | chr7_4:56229291-56229310 | Msa1164520:intron | 20.0% |
| !! | GTTATATAAAATCCGTAAAT+CGG | - | chr7_4:56229756-56229775 | None:intergenic | 20.0% |
| !! | AAAAGTAGCATTTACTAAAA+AGG | - | chr7_4:56230461-56230480 | None:intergenic | 20.0% |
| !!! | TACTTAAATTGATGATTTGT+GGG | + | chr7_4:56231311-56231330 | Msa1164520:intron | 20.0% |
| !!! | GCATAAACTTTTTATTCTAA+AGG | + | chr7_4:56231475-56231494 | Msa1164520:intron | 20.0% |
| !! | TGAAATGCATTATGTAAATT+TGG | + | chr7_4:56231593-56231612 | Msa1164520:intron | 20.0% |
| !!! | AAATGTCCATAATCAATTTT+TGG | + | chr7_4:56232102-56232121 | Msa1164520:intron | 20.0% |
| !! | ATAAATCAAATGAAAGATGA+AGG | - | chr7_4:56232513-56232532 | None:intergenic | 20.0% |
| !! | ATATTGAAATATGTGAATGT+AGG | + | chr7_4:56232669-56232688 | Msa1164520:intron | 20.0% |
| !!! | CTTGTACTTTTTTTTTTTGA+AGG | + | chr7_4:56232755-56232774 | Msa1164520:intron | 20.0% |
| !!! | AAAATGATCTGAAATGAATA+TGG | - | chr7_4:56232816-56232835 | None:intergenic | 20.0% |
| !!! | GACAATCAATTTTTAATATC+AGG | - | chr7_4:56233020-56233039 | None:intergenic | 20.0% |
| !! | AATAGTTTCAATTACTTCAA+GGG | - | chr7_4:56233081-56233100 | None:intergenic | 20.0% |
| !! | AAATAGTTTCAATTACTTCA+AGG | - | chr7_4:56233082-56233101 | None:intergenic | 20.0% |
| !! | TTGAAGTAATTGAAACTATT+TGG | + | chr7_4:56233081-56233100 | Msa1164520:intron | 20.0% |
| !!! | TGAAAAGGATTTTTACATTT+TGG | + | chr7_4:56233475-56233494 | Msa1164520:three_prime_UTR | 20.0% |
| !!! | GAAAAGGATTTTTACATTTT+GGG | + | chr7_4:56233476-56233495 | Msa1164520:three_prime_UTR | 20.0% |
| !! | CATCATAAAAATCATTCAAA+GGG | - | chr7_4:56233567-56233586 | None:intergenic | 20.0% |
| !!! | GGGAATTTTGTTATTTATAT+TGG | + | chr7_4:56233598-56233617 | Msa1164520:three_prime_UTR | 20.0% |
| ! | GAAAACCCTAAATAGAATTT+AGG | + | chr7_4:56229155-56229174 | Msa1164520:intron | 25.0% |
| ! | GAAAACCCTAAATTCTATTT+AGG | - | chr7_4:56229164-56229183 | None:intergenic | 25.0% |
| !!! | AGAATTTAGGGTTTTCTTTT+CGG | + | chr7_4:56229168-56229187 | Msa1164520:intron | 25.0% |
| ! | TAAAAGTGATAAACATGATC+AGG | - | chr7_4:56229411-56229430 | None:intergenic | 25.0% |
| ! | GATGGTATAGAATAAATTGA+CGG | + | chr7_4:56229845-56229864 | Msa1164520:intron | 25.0% |
| !! | ATTTATTCTTTTTAACCACG+AGG | + | chr7_4:56229877-56229896 | Msa1164520:intron | 25.0% |
| !! | TTTATTCTTTTTAACCACGA+GGG | + | chr7_4:56229878-56229897 | Msa1164520:intron | 25.0% |
| ! | TTAAGAACAAAGATGTCAAT+AGG | + | chr7_4:56230123-56230142 | Msa1164520:CDS | 25.0% |
| ! | TTCTACAATCAAATTATACC+AGG | - | chr7_4:56230317-56230336 | None:intergenic | 25.0% |
| !!! | GATTGTAGAATCATGTTTTT+TGG | + | chr7_4:56230327-56230346 | Msa1164520:intron | 25.0% |
| !! | GTACTTAAATTGATGATTTG+TGG | + | chr7_4:56231310-56231329 | Msa1164520:intron | 25.0% |
| !! | ACTTAAATTGATGATTTGTG+GGG | + | chr7_4:56231312-56231331 | Msa1164520:intron | 25.0% |
| !! | TTTTGAACGATTGTCATATA+CGG | + | chr7_4:56231416-56231435 | Msa1164520:intron | 25.0% |
| ! | AATGAAACTTTAGTATTCTC+TGG | + | chr7_4:56231506-56231525 | Msa1164520:intron | 25.0% |
| ! | TTAGTATTCTCTGGTAAAAT+TGG | + | chr7_4:56231515-56231534 | Msa1164520:intron | 25.0% |
| ! | ACAGTATTCTATGGTAAAAT+TGG | + | chr7_4:56231561-56231580 | Msa1164520:intron | 25.0% |
| !! | AGCACAATCTAAAATAGAAA+TGG | + | chr7_4:56231866-56231885 | Msa1164520:intron | 25.0% |
| !! | GCACAATCTAAAATAGAAAT+GGG | + | chr7_4:56231867-56231886 | Msa1164520:intron | 25.0% |
| ! | ATTTGGCCAAAAATTGATTA+TGG | - | chr7_4:56232111-56232130 | None:intergenic | 25.0% |
| ! | AAAACAAACTCGAAACTTAA+AGG | - | chr7_4:56232177-56232196 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+TGG | + | chr7_4:56232176-56232195 | Msa1164520:intron | 25.0% |
| !!! | CCAAAGTTGATTTGATAAAA+GGG | - | chr7_4:56232268-56232287 | None:intergenic | 25.0% |
| !! | ATAGATCCTTTAAGTTTCTA+AGG | - | chr7_4:56232357-56232376 | None:intergenic | 25.0% |
| !! | TCTAAGTTTGAAGTTTGTTT+CGG | - | chr7_4:56232380-56232399 | None:intergenic | 25.0% |
| !! | ATAGATCCTTTAAGTTTCTA+AGG | - | chr7_4:56232357-56232376 | None:intergenic | 25.0% |
| ! | GAAACAAACATGAAACTTAA+AGG | + | chr7_4:56232439-56232458 | Msa1164520:intron | 25.0% |
| !! | TTTAAGGCATAGAAAAATTG+AGG | - | chr7_4:56232483-56232502 | None:intergenic | 25.0% |
| ! | ATATGGATATCAGGTTAAAT+TGG | + | chr7_4:56232553-56232572 | Msa1164520:intron | 25.0% |
| !!! | TATACATTTTCTTTGAAGGA+TGG | + | chr7_4:56232626-56232645 | Msa1164520:intron | 25.0% |
| ! | TGTACTTATGATGCAATAAT+TGG | + | chr7_4:56232785-56232804 | Msa1164520:intron | 25.0% |
| ! | AAATCTATGCATGTTATTGT+AGG | + | chr7_4:56232855-56232874 | Msa1164520:intron | 25.0% |
| !! | CTTTTGACAGTAATAAATTG+AGG | - | chr7_4:56232983-56233002 | None:intergenic | 25.0% |
| !! | ATTGTTTCTTCTATTGCTTA+AGG | + | chr7_4:56233041-56233060 | Msa1164520:intron | 25.0% |
| ! | TATCACTTTCTGATGAAATA+TGG | + | chr7_4:56233171-56233190 | Msa1164520:intron | 25.0% |
| ! | ATGCTTGAATATGTTATCAA+GGG | + | chr7_4:56233408-56233427 | Msa1164520:three_prime_UTR | 25.0% |
| ! | GCATCATAAAAATCATTCAA+AGG | - | chr7_4:56233568-56233587 | None:intergenic | 25.0% |
| ! | ACTATCAAAATAAGTCTCAA+CGG | - | chr7_4:56233743-56233762 | None:intergenic | 25.0% |
| ! | AAATATTTTGTGAGGGGTTT+AGG | - | chr7_4:56228981-56229000 | None:intergenic | 30.0% |
| TAGGTTTAGATATGAGAATG+CGG | - | chr7_4:56229102-56229121 | None:intergenic | 30.0% | |
| TTGGATTTGTGTGAATTGAT+AGG | + | chr7_4:56229310-56229329 | Msa1164520:intron | 30.0% | |
| TGGATTTGTGTGAATTGATA+GGG | + | chr7_4:56229311-56229330 | Msa1164520:intron | 30.0% | |
| !! | TGTTTGTTTGATTGATTTGC+AGG | + | chr7_4:56229338-56229357 | Msa1164520:intron | 30.0% |
| ATATACCAAGACTGAATTGT+CGG | - | chr7_4:56229684-56229703 | None:intergenic | 30.0% | |
| ! | TGACTAAATTGACCGATTTA+CGG | + | chr7_4:56229741-56229760 | Msa1164520:intron | 30.0% |
| ! | TTTATTCTTTTCAACCACGA+GGG | + | chr7_4:56229783-56229802 | Msa1164520:intron | 30.0% |
| AATTTAGTCTAGCATCTAGA+TGG | + | chr7_4:56229827-56229846 | Msa1164520:intron | 30.0% | |
| TAATAGATAGTTGATTGGGT+TGG | + | chr7_4:56229972-56229991 | Msa1164520:intron | 30.0% | |
| TACAATCAAATTATACCAGG+TGG | - | chr7_4:56230314-56230333 | None:intergenic | 30.0% | |
| ACACCTAGTAAGATGATTAA+TGG | + | chr7_4:56230413-56230432 | Msa1164520:intron | 30.0% | |
| AGACCATTAATCATCTTACT+AGG | - | chr7_4:56230419-56230438 | None:intergenic | 30.0% | |
| !!! | AATGCTACTTTTAACAAGTC+TGG | + | chr7_4:56230469-56230488 | Msa1164520:intron | 30.0% |
| !!! | ATGCTACTTTTAACAAGTCT+GGG | + | chr7_4:56230470-56230489 | Msa1164520:intron | 30.0% |
| ! | TTTTTATCAGCTTCAGACTA+TGG | + | chr7_4:56230617-56230636 | Msa1164520:intron | 30.0% |
| GAATCAAACCTTCTTCAAAT+CGG | - | chr7_4:56231239-56231258 | None:intergenic | 30.0% | |
| GACCAGGAATTTAAGAATTT+CGG | + | chr7_4:56231746-56231765 | Msa1164520:CDS | 30.0% | |
| AAATAGAAATGGGTGTTTAC+AGG | + | chr7_4:56231877-56231896 | Msa1164520:intron | 30.0% | |
| GAAACAAACGTGAAACTAAA+AGG | - | chr7_4:56232146-56232165 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr7_4:56232199-56232218 | Msa1164520:intron | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr7_4:56232348-56232367 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr7_4:56232210-56232229 | Msa1164520:intron | 30.0% |
| GAAACAAACTCGAAACTTAA+AGG | - | chr7_4:56232319-56232338 | None:intergenic | 30.0% | |
| ! | CCCTTTTATCAAATCAACTT+TGG | + | chr7_4:56232265-56232284 | Msa1164520:intron | 30.0% |
| !! | GCCAAAGTTGATTTGATAAA+AGG | - | chr7_4:56232269-56232288 | None:intergenic | 30.0% |
| ! | TCAAATCAACTTTGGCTTAA+CGG | + | chr7_4:56232273-56232292 | Msa1164520:intron | 30.0% |
| GAAACAAACTCGAAACTTAA+AGG | + | chr7_4:56232319-56232338 | Msa1164520:intron | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr7_4:56232210-56232229 | None:intergenic | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr7_4:56232348-56232367 | Msa1164520:intron | 30.0% | |
| GAAACAAACTTCAAACTTAG+AGG | + | chr7_4:56232379-56232398 | Msa1164520:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr7_4:56232348-56232367 | Msa1164520:intron | 30.0% | |
| !! | AGATGAAGGTTCTGATTTTA+AGG | - | chr7_4:56232499-56232518 | None:intergenic | 30.0% |
| ! | CATCATCAGATGTTTTCATA+TGG | + | chr7_4:56232536-56232555 | Msa1164520:intron | 30.0% |
| ! | GATGTTTTCATATGGATATC+AGG | + | chr7_4:56232544-56232563 | Msa1164520:intron | 30.0% |
| ! | TTCTTTGAAGGATGGTTAAT+TGG | + | chr7_4:56232634-56232653 | Msa1164520:intron | 30.0% |
| ! | TCTTTGAAGGATGGTTAATT+GGG | + | chr7_4:56232635-56232654 | Msa1164520:intron | 30.0% |
| ACACTCAAACATCTAAAGAA+AGG | - | chr7_4:56233144-56233163 | None:intergenic | 30.0% | |
| CATGCTTGAATATGTTATCA+AGG | + | chr7_4:56233407-56233426 | Msa1164520:three_prime_UTR | 30.0% | |
| ! | TGATTTTTATGATGCCATTC+AGG | + | chr7_4:56233573-56233592 | Msa1164520:three_prime_UTR | 30.0% |
| ! | TATTTATATTGGCCTCATGT+CGG | + | chr7_4:56233609-56233628 | Msa1164520:three_prime_UTR | 30.0% |
| TAATGAGAAAATGCGTTGAA+AGG | + | chr7_4:56233650-56233669 | Msa1164520:three_prime_UTR | 30.0% | |
| AATGAGAAAATGCGTTGAAA+GGG | + | chr7_4:56233651-56233670 | Msa1164520:three_prime_UTR | 30.0% | |
| AAAGAGTGAAACTGCGATTT+AGG | - | chr7_4:56229121-56229140 | None:intergenic | 35.0% | |
| !! | TTTTCGGTTACCTTTGTTTC+TGG | + | chr7_4:56229184-56229203 | Msa1164520:five_prime_UTR | 35.0% |
| !! | TGTTTGATTGATTTGCAGGT+TGG | + | chr7_4:56229342-56229361 | Msa1164520:intron | 35.0% |
| !!! | TCATTTTAGTTCTAGCCTCT+TGG | + | chr7_4:56229607-56229626 | Msa1164520:intron | 35.0% |
| !! | AGCCTCTTGGTGATTTTAAT+CGG | + | chr7_4:56229620-56229639 | Msa1164520:intron | 35.0% |
| TTCCGATTAAAATCACCAAG+AGG | - | chr7_4:56229625-56229644 | None:intergenic | 35.0% | |
| AAAATCCGACAATTCAGTCT+TGG | + | chr7_4:56229676-56229695 | Msa1164520:intron | 35.0% | |
| ! | GTTTATTCTTTTCAACCACG+AGG | + | chr7_4:56229782-56229801 | Msa1164520:intron | 35.0% |
| TTTCATCAAAAATACCCTCG+TGG | - | chr7_4:56229800-56229819 | None:intergenic | 35.0% | |
| TCATATAGATGATGATCCAG+TGG | + | chr7_4:56230676-56230695 | Msa1164520:CDS | 35.0% | |
| AGTTTCATCTACCACAACTT+CGG | - | chr7_4:56230756-56230775 | None:intergenic | 35.0% | |
| ! | GATGCATAAGTTTTCTTAGC+AGG | - | chr7_4:56230869-56230888 | None:intergenic | 35.0% |
| !! | GCACTTTTAAAGGAATGTTG+TGG | - | chr7_4:56231081-56231100 | None:intergenic | 35.0% |
| ACCATAGAATACTGTTTCCA+GGG | - | chr7_4:56231556-56231575 | None:intergenic | 35.0% | |
| TACCATAGAATACTGTTTCC+AGG | - | chr7_4:56231557-56231576 | None:intergenic | 35.0% | |
| ! | TTCTGGAAGAATTATAGACC+GGG | - | chr7_4:56231669-56231688 | None:intergenic | 35.0% |
| ! | CTTCTGGAAGAATTATAGAC+CGG | - | chr7_4:56231670-56231689 | None:intergenic | 35.0% |
| ! | TAGACAGATGTTACTTCTTC+TGG | - | chr7_4:56231686-56231705 | None:intergenic | 35.0% |
| TGCCGAAATTCTTAAATTCC+TGG | - | chr7_4:56231751-56231770 | None:intergenic | 35.0% | |
| ACCCTTATGAATATTCCATC+CGG | - | chr7_4:56231782-56231801 | None:intergenic | 35.0% | |
| !! | GTTCAGTTTTATGTAGTGAG+AGG | - | chr7_4:56231818-56231837 | None:intergenic | 35.0% |
| AATGGGTGTTTACAGGAAAT+TGG | + | chr7_4:56231884-56231903 | Msa1164520:intron | 35.0% | |
| GTTTCACGTTTGTTTCAGAT+AGG | + | chr7_4:56232150-56232169 | Msa1164520:intron | 35.0% | |
| !!! | GTTTCGAGTTTGTTTTGGAT+AGG | + | chr7_4:56232181-56232200 | Msa1164520:intron | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr7_4:56232241-56232260 | Msa1164520:intron | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | - | chr7_4:56232241-56232260 | None:intergenic | 35.0% |
| AACATGAAACTTAAAGGACC+CGG | + | chr7_4:56232445-56232464 | Msa1164520:intron | 35.0% | |
| AGTTTCAATTACTTCAAGGG+AGG | - | chr7_4:56233078-56233097 | None:intergenic | 35.0% | |
| ATTTCTTACGTCTCTTGATC+AGG | + | chr7_4:56233220-56233239 | Msa1164520:intron | 35.0% | |
| AACAAACTAGCAAGTCTCAA+TGG | - | chr7_4:56233521-56233540 | None:intergenic | 35.0% | |
| ! | TTTTTATGATGCCATTCAGG+TGG | + | chr7_4:56233576-56233595 | Msa1164520:three_prime_UTR | 35.0% |
| ! | TTTTATGATGCCATTCAGGT+GGG | + | chr7_4:56233577-56233596 | Msa1164520:three_prime_UTR | 35.0% |
| AATGCGTTGAAAGGGAAAAA+AGG | + | chr7_4:56233659-56233678 | Msa1164520:three_prime_UTR | 35.0% | |
| !!! | GACTTATTTTGATAGTGTCG+TGG | + | chr7_4:56233747-56233766 | Msa1164520:three_prime_UTR | 35.0% |
| TTGCACAGATCCAGAAACAA+AGG | - | chr7_4:56229197-56229216 | None:intergenic | 40.0% | |
| TTTCTGGATCTGTGCAACTA+TGG | + | chr7_4:56229200-56229219 | Msa1164520:exon | 40.0% | |
| !! | CAGGTTGGTTCTTACTTTGT+GGG | + | chr7_4:56229357-56229376 | Msa1164520:intron | 40.0% |
| AGTTCGATGATTCGTGTTGA+CGG | + | chr7_4:56229441-56229460 | Msa1164520:CDS | 40.0% | |
| !!! | AACCACGAGGGTATTTTTGA+AGG | + | chr7_4:56229795-56229814 | Msa1164520:intron | 40.0% |
| !!! | ACCACGAGGGTATTTTTGAA+GGG | + | chr7_4:56229891-56229910 | Msa1164520:intron | 40.0% |
| GATCAAGACGATCAATTCTC+TGG | + | chr7_4:56230058-56230077 | Msa1164520:CDS | 40.0% | |
| GATCAATTCTCTGGACTCTT+GGG | + | chr7_4:56230067-56230086 | Msa1164520:CDS | 40.0% | |
| GGAGTGATTGTAATGGTTAC+AGG | + | chr7_4:56230095-56230114 | Msa1164520:CDS | 40.0% | |
| ACAAAATAACCCTTCTCCTG+AGG | - | chr7_4:56230182-56230201 | None:intergenic | 40.0% | |
| GCAAAAGAAGCAGAAACATG+TGG | - | chr7_4:56230287-56230306 | None:intergenic | 40.0% | |
| !! | AGCTTCAGACTATGGTTTTG+AGG | + | chr7_4:56230625-56230644 | Msa1164520:intron | 40.0% |
| GTATGTGCAACATTATGCAC+TGG | - | chr7_4:56230800-56230819 | None:intergenic | 40.0% | |
| AATTTGTAGTTACGCGCCAA+AGG | + | chr7_4:56231021-56231040 | Msa1164520:intron | 40.0% | |
| ! | ACATGATTGTACTCTGAAGG+AGG | - | chr7_4:56231108-56231127 | None:intergenic | 40.0% |
| GTCACATGATTGTACTCTGA+AGG | - | chr7_4:56231111-56231130 | None:intergenic | 40.0% | |
| TCTGCATATGTTTCAGAGTC+TGG | + | chr7_4:56231189-56231208 | Msa1164520:CDS | 40.0% | |
| CTGCATATGTTTCAGAGTCT+GGG | + | chr7_4:56231190-56231209 | Msa1164520:CDS | 40.0% | |
| CAGTCAAAAAACACGCGTAA+CGG | - | chr7_4:56231361-56231380 | None:intergenic | 40.0% | |
| ! | ATTGTTACTCGAAGTGCTAG+TGG | + | chr7_4:56231386-56231405 | Msa1164520:intron | 40.0% |
| ATAGAATACTGTTTCCAGGG+TGG | - | chr7_4:56231553-56231572 | None:intergenic | 40.0% | |
| ACCCTGGAAACAGTATTCTA+TGG | + | chr7_4:56231552-56231571 | Msa1164520:intron | 40.0% | |
| TGTGTCATCAAGTTAACACC+CGG | + | chr7_4:56231648-56231667 | Msa1164520:intron | 40.0% | |
| TCAGCTTCAGTAATATCAGC+AGG | - | chr7_4:56231722-56231741 | None:intergenic | 40.0% | |
| GAATTTCGGCAGAATTAAGC+CGG | + | chr7_4:56231760-56231779 | Msa1164520:CDS | 40.0% | |
| AGCCGGATGGAATATTCATA+AGG | + | chr7_4:56231777-56231796 | Msa1164520:CDS | 40.0% | |
| GCCGGATGGAATATTCATAA+GGG | + | chr7_4:56231778-56231797 | Msa1164520:CDS | 40.0% | |
| AATATTCATAAGGGTCCGAC+AGG | + | chr7_4:56231787-56231806 | Msa1164520:CDS | 40.0% | |
| !! | TGGAGTTTGCTATGCATTTG+TGG | + | chr7_4:56231904-56231923 | Msa1164520:CDS | 40.0% |
| CATACTGAAGATACCAGATG+TGG | + | chr7_4:56232057-56232076 | Msa1164520:intron | 40.0% | |
| TAAACAAGTCGATCCACATC+TGG | - | chr7_4:56232073-56232092 | None:intergenic | 40.0% | |
| ! | AATCAACTTTGGCTTAACGG+AGG | + | chr7_4:56232276-56232295 | Msa1164520:intron | 40.0% |
| !! | CTTAACGGAGGTTGATAGAA+AGG | + | chr7_4:56232288-56232307 | Msa1164520:intron | 40.0% |
| ACATGAAACTTAAAGGACCC+GGG | + | chr7_4:56232446-56232465 | Msa1164520:intron | 40.0% | |
| CTTCGCTCCTCTATGTATAT+TGG | - | chr7_4:56232907-56232926 | None:intergenic | 40.0% | |
| TGAAGATAACCATCACCTCT+TGG | - | chr7_4:56233355-56233374 | None:intergenic | 40.0% | |
| ! | TGCACAACATTTTCCTTCTG+TGG | + | chr7_4:56233447-56233466 | Msa1164520:three_prime_UTR | 40.0% |
| ! | CCTTTTCATGAAACCACAGA+AGG | - | chr7_4:56233463-56233482 | None:intergenic | 40.0% |
| CCTTCTGTGGTTTCATGAAA+AGG | + | chr7_4:56233460-56233479 | Msa1164520:three_prime_UTR | 40.0% | |
| TTTATGATGCCATTCAGGTG+GGG | + | chr7_4:56233578-56233597 | Msa1164520:three_prime_UTR | 40.0% | |
| AACAAAATTCCCCACCTGAA+TGG | - | chr7_4:56233590-56233609 | None:intergenic | 40.0% | |
| AAGGGAAAAAAGGATTGTGC+AGG | + | chr7_4:56233669-56233688 | Msa1164520:three_prime_UTR | 40.0% | |
| TGCAACTATGGCTTCGTATC+AGG | + | chr7_4:56229212-56229231 | Msa1164520:exon | 45.0% | |
| GCAACTATGGCTTCGTATCA+GGG | + | chr7_4:56229213-56229232 | Msa1164520:exon | 45.0% | |
| !! | GCAGGTTGGTTCTTACTTTG+TGG | + | chr7_4:56229356-56229375 | Msa1164520:intron | 45.0% |
| TGAGACTGCATCTGATGTCT+TGG | + | chr7_4:56229473-56229492 | Msa1164520:CDS | 45.0% | |
| TCCCTTCAAAAATACCCTCG+TGG | - | chr7_4:56229895-56229914 | None:intergenic | 45.0% | |
| CGATCAATTCTCTGGACTCT+TGG | + | chr7_4:56230066-56230085 | Msa1164520:CDS | 45.0% | |
| AATTCTCTGGACTCTTGGGA+TGG | + | chr7_4:56230071-56230090 | Msa1164520:CDS | 45.0% | |
| GGATGGAGGAGTGATTGTAA+TGG | + | chr7_4:56230088-56230107 | Msa1164520:CDS | 45.0% | |
| AGATGTAGTGCATCCGAATC+TGG | + | chr7_4:56230229-56230248 | Msa1164520:CDS | 45.0% | |
| TCAATCCTTTCAGATGCCAC+CGG | - | chr7_4:56230257-56230276 | None:intergenic | 45.0% | |
| ! | CAAGTCTGGGATAGCAGAAT+TGG | + | chr7_4:56230483-56230502 | Msa1164520:intron | 45.0% |
| GGAAGACTATACTTGTCCAC+TGG | - | chr7_4:56230695-56230714 | None:intergenic | 45.0% | |
| AGATTTCGAGACCGAAGTTG+TGG | + | chr7_4:56230742-56230761 | Msa1164520:CDS | 45.0% | |
| GGTAGATGAAACTCCTGTAC+AGG | + | chr7_4:56230763-56230782 | Msa1164520:CDS | 45.0% | |
| AGATGAAACTCCTGTACAGG+AGG | + | chr7_4:56230766-56230785 | Msa1164520:CDS | 45.0% | |
| TGTGCAACATTATGCACTGG+CGG | - | chr7_4:56230797-56230816 | None:intergenic | 45.0% | |
| ! | TCCTGTGGAAGAGTCTTTTG+AGG | + | chr7_4:56230841-56230860 | Msa1164520:CDS | 45.0% |
| TCCTCAAAAGACTCTTCCAC+AGG | - | chr7_4:56230845-56230864 | None:intergenic | 45.0% | |
| GAATGTTGTGGAGCATGTTG+TGG | - | chr7_4:56231069-56231088 | None:intergenic | 45.0% | |
| !!! | AGGAGGAGGAGCACTTTTAA+AGG | - | chr7_4:56231091-56231110 | None:intergenic | 45.0% |
| ! | TGATTGTACTCTGAAGGAGG+AGG | - | chr7_4:56231105-56231124 | None:intergenic | 45.0% |
| !! | GAAGGCTACCGATTTGAAGA+AGG | + | chr7_4:56231228-56231247 | Msa1164520:CDS | 45.0% |
| !! | AAACACGCGTAACGGATGAT+CGG | - | chr7_4:56231353-56231372 | None:intergenic | 45.0% |
| TACTGAAGCTGAGATTGACC+AGG | + | chr7_4:56231730-56231749 | Msa1164520:CDS | 45.0% | |
| GTGGAATTCGAAGACGTTGT+TGG | + | chr7_4:56231923-56231942 | Msa1164520:CDS | 45.0% | |
| !! | TTTTTGGCCAAATACCTCCG+TGG | + | chr7_4:56232118-56232137 | Msa1164520:intron | 45.0% |
| ! | TTTTGGCCAAATACCTCCGT+GGG | + | chr7_4:56232119-56232138 | Msa1164520:intron | 45.0% |
| CGTGAAACTAAAAGGACCCA+CGG | - | chr7_4:56232138-56232157 | None:intergenic | 45.0% | |
| CATGAAACTTAAAGGACCCG+GGG | + | chr7_4:56232447-56232466 | Msa1164520:intron | 45.0% | |
| ! | CTTCTCCCATTCAACTTGCT+GGG | + | chr7_4:56232878-56232897 | Msa1164520:CDS | 45.0% |
| TGGGCGACCAATATACATAG+AGG | + | chr7_4:56232897-56232916 | Msa1164520:CDS | 45.0% | |
| TCTTACGTCTCTTGATCAGG+AGG | + | chr7_4:56233223-56233242 | Msa1164520:intron | 45.0% | |
| TATCCAACAGATGCTCCTAG+AGG | + | chr7_4:56233268-56233287 | Msa1164520:CDS | 45.0% | |
| ATCCAACAGATGCTCCTAGA+GGG | + | chr7_4:56233269-56233288 | Msa1164520:CDS | 45.0% | |
| ! | TGGAGTAGTCTGAAGTATCC+TGG | - | chr7_4:56233330-56233349 | None:intergenic | 45.0% |
| ATAACCATCACCTCTTGGTC+TGG | - | chr7_4:56233350-56233369 | None:intergenic | 45.0% | |
| !!! | TAAATTTTATTTTTTTTATG+TGG | + | chr7_4:56229283-56229302 | Msa1164520:intron | 5.0% |
| GAATGCGGAGAGAAAAACGC+AGG | - | chr7_4:56229087-56229106 | None:intergenic | 50.0% | |
| AACCTTCTTCCTTGCTCCTC+AGG | + | chr7_4:56230163-56230182 | Msa1164520:CDS | 50.0% | |
| TTCCTTGCTCCTCAGGAGAA+GGG | + | chr7_4:56230170-56230189 | Msa1164520:CDS | 50.0% | |
| AGTGCATCCGAATCTGGTAC+CGG | + | chr7_4:56230235-56230254 | Msa1164520:CDS | 50.0% | |
| ! | GCTTCTTTTGCTGAACCACC+TGG | + | chr7_4:56230296-56230315 | Msa1164520:CDS | 50.0% |
| TTCGGCAGAATTAAGCCGGA+TGG | + | chr7_4:56231764-56231783 | Msa1164520:CDS | 50.0% | |
| TAGTGAGAGGAGCTACCTGT+CGG | - | chr7_4:56231805-56231824 | None:intergenic | 50.0% | |
| TGGCACACAAAATGCGCTTC+AGG | + | chr7_4:56231943-56231962 | Msa1164520:CDS | 50.0% | |
| !! | AAAGGACCCACGGAGGTATT+TGG | - | chr7_4:56232128-56232147 | None:intergenic | 50.0% |
| GAAACTAAAAGGACCCACGG+AGG | - | chr7_4:56232135-56232154 | None:intergenic | 50.0% | |
| ATTGAGGCCAAATACCTCCC+CGG | - | chr7_4:56232467-56232486 | None:intergenic | 50.0% | |
| GCTTCTCCCATTCAACTTGC+TGG | + | chr7_4:56232877-56232896 | Msa1164520:CDS | 50.0% | |
| ACGTCTCTTGATCAGGAGGA+AGG | + | chr7_4:56233227-56233246 | Msa1164520:intron | 50.0% | |
| CGTCTCTTGATCAGGAGGAA+GGG | + | chr7_4:56233228-56233247 | Msa1164520:intron | 50.0% | |
| GTCTCTTGATCAGGAGGAAG+GGG | + | chr7_4:56233229-56233248 | Msa1164520:intron | 50.0% | |
| TCAGACTACTCCAGACCAAG+AGG | + | chr7_4:56233337-56233356 | Msa1164520:CDS | 50.0% | |
| TACTCCAGACCAAGAGGTGA+TGG | + | chr7_4:56233343-56233362 | Msa1164520:CDS | 50.0% | |
| ! | GGTGATGGTTATCTTCAGCG+TGG | + | chr7_4:56233358-56233377 | Msa1164520:CDS | 50.0% |
| TCTTCAGCGTGGTTCACGAT+AGG | + | chr7_4:56233369-56233388 | Msa1164520:CDS | 50.0% | |
| ! | ATTGGCCTCATGTCGGATTG+TGG | + | chr7_4:56233616-56233635 | Msa1164520:three_prime_UTR | 50.0% |
| AGCATCCACAATCCGACATG+AGG | - | chr7_4:56233624-56233643 | None:intergenic | 50.0% | |
| TCTCTGGACTCTTGGGATGG+AGG | + | chr7_4:56230074-56230093 | Msa1164520:CDS | 55.0% | |
| CTCCTGAGGAGCAAGGAAGA+AGG | - | chr7_4:56230168-56230187 | None:intergenic | 55.0% | |
| CTTCCTTGCTCCTCAGGAGA+AGG | + | chr7_4:56230169-56230188 | Msa1164520:CDS | 55.0% | |
| AACCCTTCTCCTGAGGAGCA+AGG | - | chr7_4:56230175-56230194 | None:intergenic | 55.0% | |
| GATGCCACCGGTACCAGATT+CGG | - | chr7_4:56230245-56230264 | None:intergenic | 55.0% | |
| !! | TGGTACCGGTGGCATCTGAA+AGG | + | chr7_4:56230249-56230268 | Msa1164520:CDS | 55.0% |
| AGTTGCTGCTGCTGCTGTTC+AGG | - | chr7_4:56230716-56230735 | None:intergenic | 55.0% | |
| AGACTCTTCCACAGGAGCAG+CGG | - | chr7_4:56230837-56230856 | None:intergenic | 55.0% | |
| ! | AGACAACGCTGCTTGGCCTT+TGG | - | chr7_4:56231040-56231059 | None:intergenic | 55.0% |
| ! | ACCACTGACTGCTGAACAGC+AGG | - | chr7_4:56231138-56231157 | None:intergenic | 55.0% |
| GAGCTTGACTGCTGGAAAGC+AGG | - | chr7_4:56231165-56231184 | None:intergenic | 55.0% | |
| CAGATGCTGAGCTTGACTGC+TGG | - | chr7_4:56231173-56231192 | None:intergenic | 55.0% | |
| TGTTTCAGAGTCTGGGCCTG+AGG | + | chr7_4:56231197-56231216 | Msa1164520:CDS | 55.0% | |
| ! | GGTGCTTTGTTCTACCACCC+TGG | + | chr7_4:56231536-56231555 | Msa1164520:intron | 55.0% |
| GAAACTTAAAGGACCCGGGG+AGG | + | chr7_4:56232450-56232469 | Msa1164520:intron | 55.0% | |
| !! | AAAGGACCCGGGGAGGTATT+TGG | + | chr7_4:56232457-56232476 | Msa1164520:intron | 55.0% |
| TTGAGGCCAAATACCTCCCC+GGG | - | chr7_4:56232466-56232485 | None:intergenic | 55.0% | |
| ! | GGTCGCCCAGCAAGTTGAAT+GGG | - | chr7_4:56232886-56232905 | None:intergenic | 55.0% |
| ! | TGGTCGCCCAGCAAGTTGAA+TGG | - | chr7_4:56232887-56232906 | None:intergenic | 55.0% |
| CGAGTTGCACTGCTAGTGCT+TGG | - | chr7_4:56232931-56232950 | None:intergenic | 55.0% | |
| AGCACTAGCAGTGCAACTCG+AGG | + | chr7_4:56232931-56232950 | Msa1164520:CDS | 55.0% | |
| ACTAGCAGTGCAACTCGAGG+AGG | + | chr7_4:56232934-56232953 | Msa1164520:CDS | 55.0% | |
| TGATCAGGAGGAAGGGGAAG+AGG | + | chr7_4:56233235-56233254 | Msa1164520:intron | 55.0% | |
| !!! | GATGCTCCTAGAGGGCGTTT+TGG | + | chr7_4:56233277-56233296 | Msa1164520:CDS | 55.0% |
| !! | GCGTTTTGGTGGTCGTAGCT+CGG | + | chr7_4:56233291-56233310 | Msa1164520:CDS | 55.0% |
| !! | CGTTTTGGTGGTCGTAGCTC+GGG | + | chr7_4:56233292-56233311 | Msa1164520:CDS | 55.0% |
| CTCGGGAAGGGGATATTACC+AGG | + | chr7_4:56233309-56233328 | Msa1164520:CDS | 55.0% | |
| GGGTTCAGTTAGTGCTGCCC+AGG | + | chr7_4:56229233-56229252 | Msa1164520:CDS | 60.0% | |
| ! | GCATCCGAATCTGGTACCGG+TGG | + | chr7_4:56230238-56230257 | Msa1164520:CDS | 60.0% |
| ACTCTTCCACAGGAGCAGCG+GGG | - | chr7_4:56230835-56230854 | None:intergenic | 60.0% | |
| GACTCTTCCACAGGAGCAGC+GGG | - | chr7_4:56230836-56230855 | None:intergenic | 60.0% | |
| GAGCAGCAGACAACGCTGCT+TGG | - | chr7_4:56231047-56231066 | None:intergenic | 60.0% | |
| GCCTGCTGTTCAGCAGTCAG+TGG | + | chr7_4:56231134-56231153 | Msa1164520:CDS | 60.0% | |
| TAGCCTTCCTCAGCTGCCTC+AGG | - | chr7_4:56231216-56231235 | None:intergenic | 60.0% | |
| !! | CGCCCTCTAGGAGCATCTGT+TGG | - | chr7_4:56233274-56233293 | None:intergenic | 60.0% |
| !!! | GCTCCTAGAGGGCGTTTTGG+TGG | + | chr7_4:56233280-56233299 | Msa1164520:CDS | 60.0% |
| CGACCACCAAAACGCCCTCT+AGG | - | chr7_4:56233286-56233305 | None:intergenic | 60.0% | |
| ! | TTGGTGGTCGTAGCTCGGGA+AGG | + | chr7_4:56233296-56233315 | Msa1164520:CDS | 60.0% |
| TGGTGGTCGTAGCTCGGGAA+GGG | + | chr7_4:56233297-56233316 | Msa1164520:CDS | 60.0% | |
| GGCGGAGATGCCTCCTGTAC+AGG | - | chr7_4:56230779-56230798 | None:intergenic | 65.0% | |
| CAGGAGCAGCGGGGGTTTCA+CGG | - | chr7_4:56230826-56230845 | None:intergenic | 65.0% | |
| TGAAACCCCCGCTGCTCCTG+TGG | + | chr7_4:56230826-56230845 | Msa1164520:CDS | 65.0% | |
| CTCTTCCACAGGAGCAGCGG+GGG | - | chr7_4:56230834-56230853 | None:intergenic | 65.0% | |
| GGAGGAAGGGGAAGAGGCAG+AGG | + | chr7_4:56233241-56233260 | Msa1164520:intron | 65.0% | |
| GGTGGTCGTAGCTCGGGAAG+GGG | + | chr7_4:56233298-56233317 | Msa1164520:CDS | 65.0% | |
| GTCTGGGCCTGAGGCAGCTG+AGG | + | chr7_4:56231206-56231225 | Msa1164520:CDS | 70.0% | |
| GGGCCTGAGGCAGCTGAGGA+AGG | + | chr7_4:56231210-56231229 | Msa1164520:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56228974 | 56233797 | 56228974 | ID=Msa1164520;Name=Msa1164520 |
| chr7_4 | mRNA | 56228974 | 56233797 | 56228974 | ID=Msa1164520-mRNA-1;Parent=Msa1164520;Name=Msa1164520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=216|0.88|0.9|1|0.88|0.8|10|407|471 |
| chr7_4 | exon | 56228974 | 56229148 | 56228974 | ID=Msa1164520-mRNA-1:exon:16738;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56229178 | 56229254 | 56229178 | ID=Msa1164520-mRNA-1:exon:16739;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56229360 | 56229494 | 56229360 | ID=Msa1164520-mRNA-1:exon:16740;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56229978 | 56230317 | 56229978 | ID=Msa1164520-mRNA-1:exon:16741;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56230627 | 56230892 | 56230627 | ID=Msa1164520-mRNA-1:exon:16742;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56231030 | 56231249 | 56231030 | ID=Msa1164520-mRNA-1:exon:16743;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56231687 | 56231808 | 56231687 | ID=Msa1164520-mRNA-1:exon:16744;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56231899 | 56231964 | 56231899 | ID=Msa1164520-mRNA-1:exon:16745;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56232877 | 56232958 | 56232877 | ID=Msa1164520-mRNA-1:exon:16746;Parent=Msa1164520-mRNA-1 |
| chr7_4 | exon | 56233242 | 56233797 | 56233242 | ID=Msa1164520-mRNA-1:exon:16747;Parent=Msa1164520-mRNA-1 |
| chr7_4 | five_prime_UTR | 56228974 | 56229148 | 56228974 | ID=Msa1164520-mRNA-1:five_prime_utr;Parent=Msa1164520-mRNA-1 |
| chr7_4 | five_prime_UTR | 56229178 | 56229218 | 56229178 | ID=Msa1164520-mRNA-1:five_prime_utr;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56229219 | 56229254 | 56229219 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56229360 | 56229494 | 56229360 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56229978 | 56230317 | 56229978 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56230627 | 56230892 | 56230627 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56231030 | 56231249 | 56231030 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56231687 | 56231808 | 56231687 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56231899 | 56231964 | 56231899 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56232877 | 56232958 | 56232877 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | CDS | 56233242 | 56233390 | 56233242 | ID=Msa1164520-mRNA-1:cds;Parent=Msa1164520-mRNA-1 |
| chr7_4 | three_prime_UTR | 56233391 | 56233797 | 56233391 | ID=Msa1164520-mRNA-1:three_prime_utr;Parent=Msa1164520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
