AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341520 MtrunA17_Chr2g0333811 98.899 545 6 0 1 545 1 545 0.0 1097
Msa0341520 MtrunA17_Chr3g0124991 59.010 505 196 2 41 537 30 531 0.0 617
Msa0341520 MtrunA17_Chr3g0124971 58.869 513 201 3 30 537 31 538 0.0 587
Msa0341520 MtrunA17_Chr3g0134491 41.453 468 252 8 31 492 54 505 2.10e-107 331
Msa0341520 MtrunA17_Chr4g0053701 42.890 436 229 8 30 456 40 464 3.52e-106 328
Msa0341520 MtrunA17_Chr5g0401611 41.667 456 244 8 44 492 51 491 5.48e-106 327
Msa0341520 MtrunA17_Chr8g0347551 37.924 472 266 10 30 492 69 522 3.46e-97 305
Msa0341520 MtrunA17_Chr7g0264231 26.601 406 266 12 54 452 38 418 1.50e-32 133
Msa0341520 MtrunA17_Chr2g0309271 27.344 384 248 13 90 464 3 364 1.27e-31 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341520 AT1G15960.1 79.238 525 96 2 16 538 6 519 0.0 859
Msa0341520 AT1G80830.1 77.289 546 109 4 1 545 1 532 0.0 854
Msa0341520 AT1G80830.2 77.289 546 109 4 1 545 1 532 0.0 854
Msa0341520 AT5G67330.1 41.943 422 231 6 42 456 46 460 2.28e-105 326
Msa0341520 AT1G47240.1 39.958 473 261 9 30 496 53 508 3.92e-105 326
Msa0341520 AT2G23150.1 40.263 457 253 8 44 494 52 494 2.11e-101 315
Msa0341520 AT4G18790.1 39.046 461 249 10 44 492 66 506 7.00e-97 304
Msa0341520 AT5G03280.1 27.865 384 248 9 54 427 24 388 1.01e-33 137

Find 145 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTCATTTGCTGACTTTC+AGG 0.118858 2_4:+63307045 None:intergenic
GCCCCAGGTTCTTCTAATTC+TGG 0.123902 2_4:-63310737 Msa0341520:CDS
ATTGGTGGCTCTGCTGGGGC+TGG 0.172769 2_4:-63308073 Msa0341520:CDS
GATAATCGGTTCTCTTATTA+TGG 0.190853 2_4:-63307253 Msa0341520:CDS
TGGACTGATTCTAATTATAT+TGG 0.207669 2_4:-63306768 Msa0341520:three_prime_UTR
TTCAGGCATGGCAGTATATT+TGG 0.208592 2_4:-63307133 Msa0341520:CDS
TTGGTGGCTCTGCTGGGGCT+GGG 0.236113 2_4:-63308072 Msa0341520:CDS
GCGGTCATTGGTGGCTCTGC+TGG 0.238481 2_4:-63308079 Msa0341520:CDS
GGGTGTCAAACTTTATTCTT+TGG 0.241037 2_4:-63309629 Msa0341520:CDS
GATCTTATCTTACAGTTTCC+TGG 0.244897 2_4:+63310093 None:intergenic
ATTGGAAAGGTTTCTGTTTC+CGG 0.246028 2_4:+63310691 None:intergenic
AGAAAGTGCCTTTGCTCTTA+TGG 0.256302 2_4:-63308634 Msa0341520:CDS
CTCTTAGCATTACAGCAATA+TGG 0.276711 2_4:-63309258 Msa0341520:CDS
TGGTGGCTCTGCTGGGGCTG+GGG 0.283239 2_4:-63308071 Msa0341520:CDS
AGAGTTGACAATAGATTTGT+AGG 0.285885 2_4:-63306860 Msa0341520:three_prime_UTR
ATGACAAATGAACAAGTAAA+TGG 0.298259 2_4:-63307030 Msa0341520:CDS
AAGGTGTTTCTTGGGATATT+AGG 0.304324 2_4:-63307159 Msa0341520:CDS
AAATGGAGTTCAAAATTGTT+TGG 0.313605 2_4:-63308362 Msa0341520:CDS
CTTAGAATGTCTTGGGGAAA+TGG 0.318045 2_4:-63308379 Msa0341520:intron
TCATGTGATGCCTATCATAA+TGG 0.322662 2_4:-63306788 Msa0341520:three_prime_UTR
TAAAGAGGGTACACACCTTT+TGG 0.324952 2_4:-63307079 Msa0341520:CDS
CCCCAGGTTCTTCTAATTCT+GGG 0.326525 2_4:-63310736 Msa0341520:CDS
TGATCTTCTTCATTTATATT+CGG 0.330046 2_4:+63308555 None:intergenic
GCCAATCTTGGAGTGGTTAC+TGG 0.337193 2_4:-63309781 Msa0341520:intron
GGTCTTGCAATTTCTCTCCT+TGG 0.337870 2_4:-63308991 Msa0341520:CDS
TCCGCCATTACTTGGATAAT+CGG 0.341900 2_4:-63307267 Msa0341520:CDS
TGCTCTTCAACGTACCTGTT+TGG 0.342285 2_4:-63309317 Msa0341520:CDS
TCAGTTACTTTGGATCATAT+TGG 0.346866 2_4:-63309842 Msa0341520:intron
TTTGCTGCAGAAAGAGAATA+TGG 0.347393 2_4:-63310762 Msa0341520:intron
CGGTCATTGGTGGCTCTGCT+GGG 0.355327 2_4:-63308078 Msa0341520:CDS
TACGACTGACGCCATGGATT+CGG 0.357741 2_4:-63308147 Msa0341520:CDS
GGAATTGCTTTGCTTGCATC+AGG 0.359030 2_4:-63308341 Msa0341520:CDS
ATTTGAGCTTCCCTTTGCTT+TGG 0.359502 2_4:-63307623 Msa0341520:CDS
ACTCGGCATTGGTACTTTCC+AGG 0.364353 2_4:-63308846 Msa0341520:CDS
ATTGTGGCCAAGGTGTTTCT+TGG 0.367006 2_4:-63307168 Msa0341520:CDS
GGACTGATTCTAATTATATT+GGG 0.368823 2_4:-63306767 Msa0341520:three_prime_UTR
GCCATTACTTAGAATGTCTT+GGG 0.369772 2_4:-63308386 Msa0341520:intron
CAATCGATGGCTGCCAATCT+TGG 0.372875 2_4:-63309793 Msa0341520:CDS
TGCAGATATCCGCCATTACT+TGG 0.375632 2_4:-63307275 Msa0341520:intron
AGTTTGATTGTTGCGGTCAT+TGG 0.376126 2_4:-63308091 Msa0341520:CDS
AACAATCAAACTAGGAACTA+TGG 0.376164 2_4:+63308102 None:intergenic
GGTGTCAAACTTTATTCTTT+GGG 0.378048 2_4:-63309628 Msa0341520:CDS
GGTCAAAGTTCTACGATAAC+AGG 0.379774 2_4:-63308320 Msa0341520:CDS
GTTTCTGTTATTTCTGTAAG+TGG 0.391479 2_4:-63308594 Msa0341520:CDS
AATTTCTCTCCTTGGTGCTA+TGG 0.403043 2_4:-63308983 Msa0341520:CDS
TCTTAGCATTACAGCAATAT+GGG 0.404272 2_4:-63309257 Msa0341520:CDS
TTGTGGCCAAGGTGTTTCTT+GGG 0.420309 2_4:-63307167 Msa0341520:CDS
TGGGATGTCACAGGCCACTA+TGG 0.423728 2_4:+63309590 None:intergenic
AATATATACTACTTAATGAA+TGG 0.424385 2_4:-63307225 Msa0341520:CDS
TAGAATCAGTCCATTATGAT+AGG 0.430753 2_4:+63306778 None:intergenic
CAAAGGGAAGCTCAAATGAT+AGG 0.430883 2_4:+63307629 None:intergenic
GTTGAGACGGATCTACAATC+TGG 0.432234 2_4:-63309978 Msa0341520:CDS
TGCCATTACTTAGAATGTCT+TGG 0.443971 2_4:-63308387 Msa0341520:intron
ACCAGTAACCACTCCAAGAT+TGG 0.444301 2_4:+63309780 None:intergenic
AACAATTTGATCAGTATTTG+TGG 0.444749 2_4:+63310652 None:intergenic
AATTCATCTCAATACCTTCT+GGG 0.447355 2_4:+63309571 None:intergenic
TTTACAACTTCTTTAGCATC+AGG 0.449320 2_4:+63309054 None:intergenic
ACGTTCAGTTCGCGGAATCA+AGG 0.457249 2_4:-63308815 Msa0341520:intron
CTAAAAGGGAGTGGTGCTAC+TGG 0.461708 2_4:-63309012 Msa0341520:CDS
TTATTTGCATACATGGGGCC+TGG 0.468558 2_4:-63310144 Msa0341520:CDS
GGCGTCAATAAGCGGGGCAT+TGG 0.469639 2_4:+63310673 None:intergenic
TCCATTGCATACATAGATCC+AGG 0.477792 2_4:-63310111 Msa0341520:CDS
ACGATAACAGGAACCTATGC+AGG 0.487911 2_4:-63308308 Msa0341520:CDS
TATTGCTGAAATTGCCATAG+TGG 0.492449 2_4:-63309604 Msa0341520:CDS
AAAATACCACGTTCAGTTCG+CGG 0.494048 2_4:-63308823 Msa0341520:CDS
GTTAACATGTACACCCATCT+TGG 0.495254 2_4:+63307570 None:intergenic
GTTACTTTGGATCATATTGG+TGG 0.496123 2_4:-63309839 Msa0341520:CDS
TCTCTTCCTGCACTCGGCAT+TGG 0.496228 2_4:-63308857 Msa0341520:CDS
TTCAACGTACCTGTTTGGAT+TGG 0.497509 2_4:-63309312 Msa0341520:CDS
GATGCTAAAGAAGTTGTAAA+GGG 0.498286 2_4:-63309051 Msa0341520:CDS
TATTTGTGGCGTCAATAAGC+GGG 0.501374 2_4:+63310666 None:intergenic
CACTAGTAGCAAAACCAAGA+TGG 0.501607 2_4:-63307584 Msa0341520:CDS
TATTGGGAACATGTGTGAAA+AGG 0.509568 2_4:-63306751 Msa0341520:three_prime_UTR
GAGCATCAATGTGCTGAGTC+CGG 0.509577 2_4:+63309278 None:intergenic
AGATTGCGTACCAAAGATGT+AGG 0.511625 2_4:+63311007 None:intergenic
AGTAGCACACCAATCCAAAC+AGG 0.511891 2_4:+63309303 None:intergenic
TGATGCTAAAGAAGTTGTAA+AGG 0.519740 2_4:-63309052 Msa0341520:CDS
TTGATTTACGACTGACGCCA+TGG 0.522886 2_4:-63308153 Msa0341520:CDS
AGAAGATCAAATGAGCTGTC+AGG 0.522894 2_4:-63308541 Msa0341520:CDS
TTGATTGTTGCGGTCATTGG+TGG 0.523728 2_4:-63308088 Msa0341520:CDS
AGTTCCTAGTTTGATTGTTG+CGG 0.526493 2_4:-63308098 Msa0341520:CDS
TGCCCAGAATTAGAAGAACC+TGG 0.527178 2_4:+63310734 None:intergenic
TGTACATGTTAACTCTATCA+TGG 0.528201 2_4:-63307560 Msa0341520:intron
CAAAAGAAGAGAGAGTGAGA+AGG 0.528237 2_4:-63311048 Msa0341520:five_prime_UTR
CCACAATTCATTTCAAGCAC+CGG 0.530989 2_4:-63310710 Msa0341520:CDS
TGACATAGAAATTGTGGCCA+AGG 0.536322 2_4:-63307178 Msa0341520:CDS
TCATAGTGACATAGAAATTG+TGG 0.537613 2_4:-63307184 Msa0341520:CDS
TGGATTGGTGTGCTACTGAC+CGG 0.537679 2_4:-63309297 Msa0341520:CDS
TTGAGACGGATCTACAATCT+GGG 0.537839 2_4:-63309977 Msa0341520:CDS
TGGGGCACAATATAAATATG+AGG 0.538942 2_4:-63309958 Msa0341520:intron
AAAAGAAGAGAGAGTGAGAA+GGG 0.543589 2_4:-63311047 Msa0341520:five_prime_UTR
TGCAGGGCAGTATGTCATGC+AGG 0.544266 2_4:-63308291 Msa0341520:intron
GCAATGGAAACAAGAAATCC+AGG 0.544675 2_4:+63310126 None:intergenic
AAAGTACCAATGCCGAGTGC+AGG 0.550845 2_4:+63308851 None:intergenic
AAGTGCCTTTGCTCTTATGG+TGG 0.551298 2_4:-63308631 Msa0341520:CDS
GGCATGGCAGTATATTTGGC+CGG 0.551698 2_4:-63307129 Msa0341520:CDS
AGCAATTGTAAACACAAGAA+AGG 0.554039 2_4:+63309110 None:intergenic
AAGCACAAGATATGCTATAC+CGG 0.555109 2_4:+63307110 None:intergenic
AAATAACAGAAACATTTATG+AGG 0.555460 2_4:+63308604 None:intergenic
AGGTTTCACATACTCTAAGT+AGG 0.556394 2_4:+63308493 None:intergenic
TCCTGGATCTATGTATGCAA+TGG 0.557782 2_4:+63310110 None:intergenic
AAAATTTATTTGCATACATG+GGG 0.559327 2_4:-63310149 Msa0341520:CDS
CAATAAGCGGGGCATTGGAA+AGG 0.560144 2_4:+63310678 None:intergenic
TTGATTCCGCGAACTGAACG+TGG 0.568877 2_4:+63308817 None:intergenic
GCCCAGAATTAGAAGAACCT+GGG 0.569323 2_4:+63310735 None:intergenic
AATACCTTCTGGGATGTCAC+AGG 0.569404 2_4:+63309581 None:intergenic
CCGGTGCTTGAAATGAATTG+TGG 0.574049 2_4:+63310710 None:intergenic
ATAATCACTTGCAGTTGAGA+CGG 0.574710 2_4:-63309991 Msa0341520:intron
AGGAGTGGTACCAAAGCAAA+GGG 0.575001 2_4:+63307613 None:intergenic
ACTAGTAGCAAAACCAAGAT+GGG 0.576135 2_4:-63307583 Msa0341520:CDS
GTGCCGCAACTAAAAGGGAG+TGG 0.578359 2_4:-63309021 Msa0341520:CDS
GAGGAGTGGTACCAAAGCAA+AGG 0.578409 2_4:+63307612 None:intergenic
TGCTCTTGTAATTCAATCGA+TGG 0.578489 2_4:-63309806 Msa0341520:CDS
CAGGTGCTGTTAGAGCCAAA+AGG 0.580978 2_4:+63307064 None:intergenic
AAAGAGAATATGGCTGCCCC+AGG 0.584661 2_4:-63310752 Msa0341520:exon
CATGACATACTGCCCTGCAT+AGG 0.585306 2_4:+63308295 None:intergenic
ATTGTAGAGCTGAATATTCG+CGG 0.585585 2_4:-63309650 Msa0341520:CDS
ATGACCGCAACAATCAAACT+AGG 0.585887 2_4:+63308094 None:intergenic
GTTAGCATATTCCGAATCCA+TGG 0.589850 2_4:+63308136 None:intergenic
GTCAATTAGAAGATTTAATG+CGG 0.597156 2_4:+63306715 None:intergenic
TTCACATACTCTAAGTAGGA+AGG 0.602936 2_4:+63308497 None:intergenic
TTGTAGAGCTGAATATTCGC+GGG 0.603523 2_4:-63309649 Msa0341520:CDS
GTATTTGTGGCGTCAATAAG+CGG 0.603651 2_4:+63310665 None:intergenic
TATATTCGGAGAATTGCAAA+CGG 0.605578 2_4:+63308569 None:intergenic
GAAGAGCATATTTAACGCAA+AGG 0.606833 2_4:+63309332 None:intergenic
CCACAATCTCTTCCTGCACT+CGG 0.612477 2_4:-63308863 Msa0341520:CDS
TAATATCCCAAGAAACACCT+TGG 0.615738 2_4:+63307161 None:intergenic
AGAACCGATTATCCAAGTAA+TGG 0.617458 2_4:+63307263 None:intergenic
GAAAGCCACCATAAGAGCAA+AGG 0.627298 2_4:+63308626 None:intergenic
CCGAGTGCAGGAAGAGATTG+TGG 0.627483 2_4:+63308863 None:intergenic
GGTCATTGGTGGCTCTGCTG+GGG 0.630348 2_4:-63308077 Msa0341520:CDS
TTGTTTGTTTGGATTCTGAG+TGG 0.634266 2_4:+63311078 None:intergenic
GATTGCGTACCAAAGATGTA+GGG 0.635554 2_4:+63311008 None:intergenic
CCATTACTTAGAATGTCTTG+GGG 0.636359 2_4:-63308385 Msa0341520:intron
ACCGATTATCCAAGTAATGG+CGG 0.641211 2_4:+63307266 None:intergenic
CTTAGCATTACAGCAATATG+GGG 0.651366 2_4:-63309256 Msa0341520:intron
CTACTAGTGAACTTGAGGAG+TGG 0.652111 2_4:+63307598 None:intergenic
CCCAGAATTAGAAGAACCTG+GGG 0.668506 2_4:+63310736 None:intergenic
GTGGCCTGTGACATCCCAGA+AGG 0.672235 2_4:-63309585 Msa0341520:intron
CGATAACAGGAACCTATGCA+GGG 0.673315 2_4:-63308307 Msa0341520:CDS
GATGGCTGCCAATCTTGGAG+TGG 0.683939 2_4:-63309788 Msa0341520:CDS
ATTTGTGGCGTCAATAAGCG+GGG 0.691894 2_4:+63310667 None:intergenic
TCTGCTGGACTACTTCTCTG+AGG 0.723987 2_4:+63306961 None:intergenic
TGAGACGGATCTACAATCTG+GGG 0.726732 2_4:-63309976 Msa0341520:CDS
ACGGCATAACCATAGCACCA+AGG 0.756062 2_4:+63308974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTATTTGCATACAT+GGG - chr2_4:63307668-63307687 Msa0341520:intron 15.0%
!! ACTTTATATACAATTGTTAT+TGG - chr2_4:63309368-63309387 Msa0341520:intron 15.0%
!! AACAACTAGAAAAAAAATTA+TGG + chr2_4:63309807-63309826 None:intergenic 15.0%
!!! AATTTTTTTTCTAGTTGTTT+TGG - chr2_4:63309808-63309827 Msa0341520:CDS 15.0%
!! AATATATACTACTTAATGAA+TGG - chr2_4:63310593-63310612 Msa0341520:intron 15.0%
!! AGTAATAAGAAGAAGAAAAT+TGG + chr2_4:63306940-63306959 None:intergenic 20.0%
!!! CTCTTTCAAAACATTTTATT+TGG - chr2_4:63307490-63307509 Msa0341520:intron 20.0%
!! ATAGAAAACACATAAATGAA+TGG + chr2_4:63307629-63307648 None:intergenic 20.0%
!! GAAAAATTTATTTGCATACA+TGG - chr2_4:63307667-63307686 Msa0341520:intron 20.0%
!! AAAATTTATTTGCATACATG+GGG - chr2_4:63307669-63307688 Msa0341520:intron 20.0%
!!! ACTTTTACTAAATAAAGTTG+TGG - chr2_4:63308083-63308102 Msa0341520:CDS 20.0%
!!! ATAAACACACTACATTTTAT+AGG - chr2_4:63308314-63308333 Msa0341520:CDS 20.0%
!!! TAAACACACTACATTTTATA+GGG - chr2_4:63308315-63308334 Msa0341520:CDS 20.0%
!!! CTTAAGGCTTTATAAAAATT+TGG + chr2_4:63308366-63308385 None:intergenic 20.0%
!!! CATATTTTCCATTTTTCTTT+CGG - chr2_4:63308395-63308414 Msa0341520:intron 20.0%
!!! AGAATACATTTTAAGAGAAA+AGG + chr2_4:63308904-63308923 None:intergenic 20.0%
!! ATAAATGTTGAAAGAGAAAA+AGG + chr2_4:63309060-63309079 None:intergenic 20.0%
!!! ATTTAACAATTTTCTTTGAC+AGG - chr2_4:63309139-63309158 Msa0341520:intron 20.0%
!! AAATAACAGAAACATTTATG+AGG + chr2_4:63309217-63309236 None:intergenic 20.0%
!! TGATCTTCTTCATTTATATT+CGG + chr2_4:63309266-63309285 None:intergenic 20.0%
!!! ATATACAATTGTTATTGGTA+AGG - chr2_4:63309373-63309392 Msa0341520:intron 20.0%
!!! CAATTTTTTTTCCTTCTTTA+GGG - chr2_4:63309637-63309656 Msa0341520:CDS 20.0%
!! AACAAAAATATTTGTCAACA+TGG - chr2_4:63310065-63310084 Msa0341520:intron 20.0%
!!! TTTGTCTTTTGTTGTTTGTT+TGG + chr2_4:63306754-63306773 None:intergenic 25.0%
! GATTTCAATTACATCATCTT+TGG - chr2_4:63306861-63306880 Msa0341520:three_prime_UTR 25.0%
! AACAATTTGATCAGTATTTG+TGG + chr2_4:63307169-63307188 None:intergenic 25.0%
! ATCCAAAGTAACTGAAAAAA+TGG + chr2_4:63307971-63307990 None:intergenic 25.0%
! AAATATGGTTAGTGTTCTTA+AGG + chr2_4:63308382-63308401 None:intergenic 25.0%
! CGAAAGAAAAATGGAAAATA+TGG + chr2_4:63308397-63308416 None:intergenic 25.0%
! AGTTTACTGTATTCATTCTA+TGG - chr2_4:63308586-63308605 Msa0341520:CDS 25.0%
! GATCAACAACAAAACAAAAA+TGG + chr2_4:63308661-63308680 None:intergenic 25.0%
!!! TTTTTGTTTTGTTGTTGATC+AGG - chr2_4:63308661-63308680 Msa0341520:intron 25.0%
! AAGAGAAAAGGAAAACAAAA+TGG + chr2_4:63308892-63308911 None:intergenic 25.0%
! TTATGACATTACTACAATCA+CGG + chr2_4:63309083-63309102 None:intergenic 25.0%
! TTACAATATACACAAGTAAC+AGG + chr2_4:63309348-63309367 None:intergenic 25.0%
! AAATGGAGTTCAAAATTGTT+TGG - chr2_4:63309456-63309475 Msa0341520:intron 25.0%
! GAAGAATTAGAAACATCAAA+AGG + chr2_4:63309612-63309631 None:intergenic 25.0%
! AAGAAGGAAAAAAAATTGCA+GGG + chr2_4:63309635-63309654 None:intergenic 25.0%
! AAAGAAGGAAAAAAAATTGC+AGG + chr2_4:63309636-63309655 None:intergenic 25.0%
!!! GCAATTTTTTTTCCTTCTTT+AGG - chr2_4:63309636-63309655 Msa0341520:CDS 25.0%
! CTAGAAAAAAAATTATGGCA+AGG + chr2_4:63309802-63309821 None:intergenic 25.0%
! AGACATATTGTCAAGTAAAA+AGG + chr2_4:63309854-63309873 None:intergenic 25.0%
! TTCCAAAATATTAGTCATAG+AGG + chr2_4:63310469-63310488 None:intergenic 25.0%
! ATGACAAATGAACAAGTAAA+TGG - chr2_4:63310788-63310807 Msa0341520:intron 25.0%
!! TGGACTGATTCTAATTATAT+TGG - chr2_4:63311050-63311069 Msa0341520:five_prime_UTR 25.0%
!! GGACTGATTCTAATTATATT+GGG - chr2_4:63311051-63311070 Msa0341520:five_prime_UTR 25.0%
! AAAATTGGTGAATTGAGTTG+AGG + chr2_4:63306925-63306944 None:intergenic 30.0%
AAGGGATTGAATGAGAATTA+AGG + chr2_4:63307210-63307229 None:intergenic 30.0%
AAATATTTGCGACATTCCTT+TGG + chr2_4:63307359-63307378 None:intergenic 30.0%
AAACAAACAACTCTTGACAT+TGG + chr2_4:63307598-63307617 None:intergenic 30.0%
GAAAACACATAAATGAATGG+TGG + chr2_4:63307626-63307645 None:intergenic 30.0%
! ATGTGTTTTCTATTTTGCAG+AGG - chr2_4:63307636-63307655 Msa0341520:CDS 30.0%
TTATAGTACTTATGATCACG+AGG - chr2_4:63307905-63307924 Msa0341520:intron 30.0%
AAATGGTGAAAAAGAGATGA+AGG + chr2_4:63307954-63307973 None:intergenic 30.0%
!!! CACCATTTTTTCAGTTACTT+TGG - chr2_4:63307966-63307985 Msa0341520:intron 30.0%
! TCAGTTACTTTGGATCATAT+TGG - chr2_4:63307976-63307995 Msa0341520:intron 30.0%
TTACTAAATAAAGTTGTGGC+TGG - chr2_4:63308087-63308106 Msa0341520:CDS 30.0%
CATATAGAACTGAATGAATC+AGG + chr2_4:63308120-63308139 None:intergenic 30.0%
GGTGTCAAACTTTATTCTTT+GGG - chr2_4:63308190-63308209 Msa0341520:intron 30.0%
AATTCATCTCAATACCTTCT+GGG + chr2_4:63308250-63308269 None:intergenic 30.0%
AAATTCATCTCAATACCTTC+TGG + chr2_4:63308251-63308270 None:intergenic 30.0%
TAGGGATTTATTTAGTGCTT+AGG - chr2_4:63308333-63308352 Msa0341520:CDS 30.0%
TTATTTAGTGCTTAGGATTG+AGG - chr2_4:63308340-63308359 Msa0341520:CDS 30.0%
TTGTACATATATGCAGTGAT+TGG - chr2_4:63308458-63308477 Msa0341520:intron 30.0%
TCTTAGCATTACAGCAATAT+GGG - chr2_4:63308561-63308580 Msa0341520:CDS 30.0%
TATGGTTTGACATCATAAAG+AGG - chr2_4:63308604-63308623 Msa0341520:CDS 30.0%
AGCAATTGTAAACACAAGAA+AGG + chr2_4:63308711-63308730 None:intergenic 30.0%
TTTACAACTTCTTTAGCATC+AGG + chr2_4:63308767-63308786 None:intergenic 30.0%
TGATGCTAAAGAAGTTGTAA+AGG - chr2_4:63308766-63308785 Msa0341520:intron 30.0%
GATGCTAAAGAAGTTGTAAA+GGG - chr2_4:63308767-63308786 Msa0341520:intron 30.0%
AAGAAGAGATGAAGAACTAA+CGG + chr2_4:63308866-63308885 None:intergenic 30.0%
! GGAAAGTACATATAGAATCA+TGG + chr2_4:63308931-63308950 None:intergenic 30.0%
TGTCATAAGTCTGTAAATTG+TGG - chr2_4:63309095-63309114 Msa0341520:CDS 30.0%
! TAACAATTTTCTTTGACAGG+AGG - chr2_4:63309142-63309161 Msa0341520:intron 30.0%
!! GTTTCTGTTATTTCTGTAAG+TGG - chr2_4:63309224-63309243 Msa0341520:intron 30.0%
TATATTCGGAGAATTGCAAA+CGG + chr2_4:63309252-63309271 None:intergenic 30.0%
CAAAGTGGACACAAAAAATA+CGG + chr2_4:63309577-63309596 None:intergenic 30.0%
AGAAGGAAAAAAAATTGCAG+GGG + chr2_4:63309634-63309653 None:intergenic 30.0%
AATCAAGAAATCCCTAAAGA+AGG + chr2_4:63309651-63309670 None:intergenic 30.0%
AACAATCAAACTAGGAACTA+TGG + chr2_4:63309719-63309738 None:intergenic 30.0%
!! AAGGCATTCGAAGATATTTT+AGG + chr2_4:63309835-63309854 None:intergenic 30.0%
GTTCAAAAAGGATTAAGTAG+AGG - chr2_4:63309995-63310014 Msa0341520:intron 30.0%
GAATGCATACACAAAGAAAA+GGG + chr2_4:63310106-63310125 None:intergenic 30.0%
TGAATGCATACACAAAGAAA+AGG + chr2_4:63310107-63310126 None:intergenic 30.0%
TGTACATGTTAACTCTATCA+TGG - chr2_4:63310258-63310277 Msa0341520:intron 30.0%
! AGACTTTTAAGCTTCCAAAA+AGG - chr2_4:63310367-63310386 Msa0341520:intron 30.0%
! AAGATAAGCTATGTTTTGCA+AGG + chr2_4:63310439-63310458 None:intergenic 30.0%
AAAATATTAGTCATAGAGGC+GGG + chr2_4:63310465-63310484 None:intergenic 30.0%
CAAAATATTAGTCATAGAGG+CGG + chr2_4:63310466-63310485 None:intergenic 30.0%
! GATAATCGGTTCTCTTATTA+TGG - chr2_4:63310565-63310584 Msa0341520:intron 30.0%
TCATAGTGACATAGAAATTG+TGG - chr2_4:63310634-63310653 Msa0341520:intron 30.0%
AGAGTTGACAATAGATTTGT+AGG - chr2_4:63310958-63310977 Msa0341520:intron 30.0%
CACATGAAAAATCAAAAGCT+TGG + chr2_4:63311017-63311036 None:intergenic 30.0%
TAGAATCAGTCCATTATGAT+AGG + chr2_4:63311043-63311062 None:intergenic 30.0%
ATTTAATGCGGAGAAAAAAC+AGG + chr2_4:63311094-63311113 None:intergenic 30.0%
TTGTTTGTTTGGATTCTGAG+TGG + chr2_4:63306743-63306762 None:intergenic 35.0%
AAAAGAAGAGAGAGTGAGAA+GGG - chr2_4:63306771-63306790 Msa0341520:three_prime_UTR 35.0%
! ATTTTCTGACCCTACATCTT+TGG - chr2_4:63306801-63306820 Msa0341520:three_prime_UTR 35.0%
ATGATGAATGAACAACATGC+AGG + chr2_4:63306988-63307007 None:intergenic 35.0%
TTTGCTGCAGAAAGAGAATA+TGG - chr2_4:63307056-63307075 Msa0341520:CDS 35.0%
ATTGGAAAGGTTTCTGTTTC+CGG + chr2_4:63307130-63307149 None:intergenic 35.0%
ATTAAGGCAAACTCACATCA+GGG + chr2_4:63307194-63307213 None:intergenic 35.0%
AATTAAGGCAAACTCACATC+AGG + chr2_4:63307195-63307214 None:intergenic 35.0%
TTGTTTGGAAACTCAGTATC+TGG - chr2_4:63307245-63307264 Msa0341520:CDS 35.0%
TGGAATTTGATCACAATAGC+TGG + chr2_4:63307279-63307298 None:intergenic 35.0%
GTTGTATTCTCATGTCATGT+AGG - chr2_4:63307381-63307400 Msa0341520:intron 35.0%
GATCTTATCTTACAGTTTCC+TGG + chr2_4:63307728-63307747 None:intergenic 35.0%
ATAATCACTTGCAGTTGAGA+CGG - chr2_4:63307827-63307846 Msa0341520:intron 35.0%
TGGGGCACAATATAAATATG+AGG - chr2_4:63307860-63307879 Msa0341520:intron 35.0%
! GTTACTTTGGATCATATTGG+TGG - chr2_4:63307979-63307998 Msa0341520:intron 35.0%
TGCTCTTGTAATTCAATCGA+TGG - chr2_4:63308012-63308031 Msa0341520:intron 35.0%
ATTGTAGAGCTGAATATTCG+CGG - chr2_4:63308168-63308187 Msa0341520:intron 35.0%
GGGTGTCAAACTTTATTCTT+TGG - chr2_4:63308189-63308208 Msa0341520:intron 35.0%
TATTGCTGAAATTGCCATAG+TGG - chr2_4:63308214-63308233 Msa0341520:intron 35.0%
AAGAGAAGCCGAAAGAAAAA+TGG + chr2_4:63308406-63308425 None:intergenic 35.0%
! GAAGAGCATATTTAACGCAA+AGG + chr2_4:63308489-63308508 None:intergenic 35.0%
CTCTTAGCATTACAGCAATA+TGG - chr2_4:63308560-63308579 Msa0341520:CDS 35.0%
CTTAGCATTACAGCAATATG+GGG - chr2_4:63308562-63308581 Msa0341520:CDS 35.0%
!!! GTTTTGTTGTTGATCAGGTT+AGG - chr2_4:63308666-63308685 Msa0341520:intron 35.0%
! TTACAATTGCTGCGTGTTTT+TGG - chr2_4:63308720-63308739 Msa0341520:intron 35.0%
! TACAATTGCTGCGTGTTTTT+GGG - chr2_4:63308721-63308740 Msa0341520:intron 35.0%
! TTTTTGTGCCGCAACTAAAA+GGG - chr2_4:63308792-63308811 Msa0341520:intron 35.0%
TTCACATACTCTAAGTAGGA+AGG + chr2_4:63309324-63309343 None:intergenic 35.0%
AGGTTTCACATACTCTAAGT+AGG + chr2_4:63309328-63309347 None:intergenic 35.0%
TGCCATTACTTAGAATGTCT+TGG - chr2_4:63309431-63309450 Msa0341520:intron 35.0%
GCCATTACTTAGAATGTCTT+GGG - chr2_4:63309432-63309451 Msa0341520:intron 35.0%
CCATTACTTAGAATGTCTTG+GGG - chr2_4:63309433-63309452 Msa0341520:intron 35.0%
AGGTTATCAATGCTTCAAAG+TGG + chr2_4:63309592-63309611 None:intergenic 35.0%
AGTTCCTAGTTTGATTGTTG+CGG - chr2_4:63309720-63309739 Msa0341520:intron 35.0%
TTTGTAACTGAGCTACATTG+TGG - chr2_4:63309934-63309953 Msa0341520:intron 35.0%
ACTTTATATAACCACGTGCA+CGG + chr2_4:63310021-63310040 None:intergenic 35.0%
TCTGATCAGTAGACAAAGAA+GGG + chr2_4:63310165-63310184 None:intergenic 35.0%
ATCTGATCAGTAGACAAAGA+AGG + chr2_4:63310166-63310185 None:intergenic 35.0%
! TTTTGCTACTAGTGAACTTG+AGG + chr2_4:63310228-63310247 None:intergenic 35.0%
ACTAGTAGCAAAACCAAGAT+GGG - chr2_4:63310235-63310254 Msa0341520:intron 35.0%
TGGAAGCTTAAAAGTCTCTT+TGG + chr2_4:63310364-63310383 None:intergenic 35.0%
CTTCCAAAAAGGTCAGAAAT+GGG - chr2_4:63310378-63310397 Msa0341520:intron 35.0%
CTACTATCTGTCATTGTCAT+AGG + chr2_4:63310404-63310423 None:intergenic 35.0%
CTATGACAATGACAGATAGT+AGG - chr2_4:63310402-63310421 Msa0341520:intron 35.0%
! CGCCTCTATGACTAATATTT+TGG - chr2_4:63310464-63310483 Msa0341520:intron 35.0%
AGAACCGATTATCCAAGTAA+TGG + chr2_4:63310558-63310577 None:intergenic 35.0%
TAATATCCCAAGAAACACCT+TGG + chr2_4:63310660-63310679 None:intergenic 35.0%
! AAGGTGTTTCTTGGGATATT+AGG - chr2_4:63310659-63310678 Msa0341520:CDS 35.0%
! CTTGGGATATTAGGATTTTC+AGG - chr2_4:63310668-63310687 Msa0341520:CDS 35.0%
!! GATATTAGGATTTTCAGGCA+TGG - chr2_4:63310673-63310692 Msa0341520:CDS 35.0%
AAGCACAAGATATGCTATAC+CGG + chr2_4:63310711-63310730 None:intergenic 35.0%
TGTGCTTCGCAAAAATAAAG+AGG - chr2_4:63310724-63310743 Msa0341520:CDS 35.0%
GTGCTTCGCAAAAATAAAGA+GGG - chr2_4:63310725-63310744 Msa0341520:CDS 35.0%
!! TTTGTCATTTGCTGACTTTC+AGG + chr2_4:63310776-63310795 None:intergenic 35.0%
!!! TTTTTTCAGTCAAGATCTGC+TGG + chr2_4:63310875-63310894 None:intergenic 35.0%
! ACTGTCTTTTGACATCACTT+AGG - chr2_4:63310983-63311002 Msa0341520:intron 35.0%
TCATGTGATGCCTATCATAA+TGG - chr2_4:63311030-63311049 Msa0341520:five_prime_UTR 35.0%
TATTGGGAACATGTGTGAAA+AGG - chr2_4:63311067-63311086 Msa0341520:five_prime_UTR 35.0%
CAAAAGAAGAGAGAGTGAGA+AGG - chr2_4:63306770-63306789 Msa0341520:three_prime_UTR 40.0%
GATTGCGTACCAAAGATGTA+GGG + chr2_4:63306813-63306832 None:intergenic 40.0%
AGATTGCGTACCAAAGATGT+AGG + chr2_4:63306814-63306833 None:intergenic 40.0%
CCACAATTCATTTCAAGCAC+CGG - chr2_4:63307108-63307127 Msa0341520:CDS 40.0%
TATTTGTGGCGTCAATAAGC+GGG + chr2_4:63307155-63307174 None:intergenic 40.0%
GTATTTGTGGCGTCAATAAG+CGG + chr2_4:63307156-63307175 None:intergenic 40.0%
CAAATTCCACTGTCCACTAA+CGG - chr2_4:63307290-63307309 Msa0341520:intron 40.0%
AAATTCCACTGTCCACTAAC+GGG - chr2_4:63307291-63307310 Msa0341520:intron 40.0%
ATTTGCGACATTCCTTTGGA+GGG + chr2_4:63307355-63307374 None:intergenic 40.0%
TATTTGCGACATTCCTTTGG+AGG + chr2_4:63307356-63307375 None:intergenic 40.0%
TCATGTCATGTAGGAGTTTC+AGG - chr2_4:63307390-63307409 Msa0341520:intron 40.0%
CATGTCATGTAGGAGTTTCA+GGG - chr2_4:63307391-63307410 Msa0341520:intron 40.0%
! AAATGAGTTGAGTCGAGGTT+TGG - chr2_4:63307415-63307434 Msa0341520:intron 40.0%
ATCATAGCTCGTAGATAGCT+AGG + chr2_4:63307551-63307570 None:intergenic 40.0%
GCAATGGAAACAAGAAATCC+AGG + chr2_4:63307695-63307714 None:intergenic 40.0%
TCCATTGCATACATAGATCC+AGG - chr2_4:63307707-63307726 Msa0341520:intron 40.0%
TCCTGGATCTATGTATGCAA+TGG + chr2_4:63307711-63307730 None:intergenic 40.0%
TTGAGACGGATCTACAATCT+GGG - chr2_4:63307841-63307860 Msa0341520:intron 40.0%
TTGTAGAGCTGAATATTCGC+GGG - chr2_4:63308169-63308188 Msa0341520:intron 40.0%
TTCAACGTACCTGTTTGGAT+TGG - chr2_4:63308506-63308525 Msa0341520:CDS 40.0%
! CTTTTTGTGCCGCAACTAAA+AGG - chr2_4:63308791-63308810 Msa0341520:intron 40.0%
!! AATTTCTCTCCTTGGTGCTA+TGG - chr2_4:63308835-63308854 Msa0341520:CDS 40.0%
! AACTGAACGTGGTATTTTCC+TGG + chr2_4:63308993-63309012 None:intergenic 40.0%
AAAATACCACGTTCAGTTCG+CGG - chr2_4:63308995-63309014 Msa0341520:CDS 40.0%
!! AGAAAGTGCCTTTGCTCTTA+TGG - chr2_4:63309184-63309203 Msa0341520:intron 40.0%
AGAAGATCAAATGAGCTGTC+AGG - chr2_4:63309277-63309296 Msa0341520:CDS 40.0%
CCCCAAGACATTCTAAGTAA+TGG + chr2_4:63309436-63309455 None:intergenic 40.0%
CTTAGAATGTCTTGGGGAAA+TGG - chr2_4:63309439-63309458 Msa0341520:intron 40.0%
GGTCAAAGTTCTACGATAAC+AGG - chr2_4:63309498-63309517 Msa0341520:intron 40.0%
GTTAGCATATTCCGAATCCA+TGG + chr2_4:63309685-63309704 None:intergenic 40.0%
ATGACCGCAACAATCAAACT+AGG + chr2_4:63309727-63309746 None:intergenic 40.0%
AGTTTGATTGTTGCGGTCAT+TGG - chr2_4:63309727-63309746 Msa0341520:intron 40.0%
ACTACTCATAGCTGCACTAT+TGG - chr2_4:63309962-63309981 Msa0341520:CDS 40.0%
GGCTTCATCTGAGTTCAAAA+AGG - chr2_4:63309983-63310002 Msa0341520:intron 40.0%
CAAAGGGAAGCTCAAATGAT+AGG + chr2_4:63310192-63310211 None:intergenic 40.0%
ATTTGAGCTTCCCTTTGCTT+TGG - chr2_4:63310195-63310214 Msa0341520:intron 40.0%
CACTAGTAGCAAAACCAAGA+TGG - chr2_4:63310234-63310253 Msa0341520:intron 40.0%
GTTAACATGTACACCCATCT+TGG + chr2_4:63310251-63310270 None:intergenic 40.0%
GCTTCCAAAAAGGTCAGAAA+TGG - chr2_4:63310377-63310396 Msa0341520:intron 40.0%
TCCGCCATTACTTGGATAAT+CGG - chr2_4:63310551-63310570 Msa0341520:intron 40.0%
ACCGATTATCCAAGTAATGG+CGG + chr2_4:63310555-63310574 None:intergenic 40.0%
TGACATAGAAATTGTGGCCA+AGG - chr2_4:63310640-63310659 Msa0341520:intron 40.0%
TTCAGGCATGGCAGTATATT+TGG - chr2_4:63310685-63310704 Msa0341520:CDS 40.0%
!! TAAAGAGGGTACACACCTTT+TGG - chr2_4:63310739-63310758 Msa0341520:CDS 40.0%
CCCAGAATTAGAAGAACCTG+GGG + chr2_4:63307085-63307104 None:intergenic 45.0%
CCCCAGGTTCTTCTAATTCT+GGG - chr2_4:63307082-63307101 Msa0341520:CDS 45.0%
GCCCAGAATTAGAAGAACCT+GGG + chr2_4:63307086-63307105 None:intergenic 45.0%
TGCCCAGAATTAGAAGAACC+TGG + chr2_4:63307087-63307106 None:intergenic 45.0%
CCGGTGCTTGAAATGAATTG+TGG + chr2_4:63307111-63307130 None:intergenic 45.0%
ATTTGTGGCGTCAATAAGCG+GGG + chr2_4:63307154-63307173 None:intergenic 45.0%
GATCACAATAGCTGGTCGTT+GGG + chr2_4:63307271-63307290 None:intergenic 45.0%
TGATCACAATAGCTGGTCGT+TGG + chr2_4:63307272-63307291 None:intergenic 45.0%
AATTCCACTGTCCACTAACG+GGG - chr2_4:63307292-63307311 Msa0341520:intron 45.0%
AAAGCTGTGGACTCAGTTTG+GGG + chr2_4:63307318-63307337 None:intergenic 45.0%
CAAAGCTGTGGACTCAGTTT+GGG + chr2_4:63307319-63307338 None:intergenic 45.0%
ACAAAGCTGTGGACTCAGTT+TGG + chr2_4:63307320-63307339 None:intergenic 45.0%
! ACTGAGTCCACAGCTTTGTA+TGG - chr2_4:63307321-63307340 Msa0341520:intron 45.0%
! AGTCCACAGCTTTGTATGGA+CGG - chr2_4:63307325-63307344 Msa0341520:intron 45.0%
TTTCCGTCCATACAAAGCTG+TGG + chr2_4:63307331-63307350 None:intergenic 45.0%
! TTTGCGACATTCCTTTGGAG+GGG + chr2_4:63307354-63307373 None:intergenic 45.0%
! AGGGTAAATGAGTTGAGTCG+AGG - chr2_4:63307410-63307429 Msa0341520:intron 45.0%
! CTATTTTGCAGAGGACAAGC+TGG - chr2_4:63307645-63307664 Msa0341520:intron 45.0%
TTATTTGCATACATGGGGCC+TGG - chr2_4:63307674-63307693 Msa0341520:intron 45.0%
GTTGAGACGGATCTACAATC+TGG - chr2_4:63307840-63307859 Msa0341520:intron 45.0%
TGAGACGGATCTACAATCTG+GGG - chr2_4:63307842-63307861 Msa0341520:intron 45.0%
ACCAGTAACCACTCCAAGAT+TGG + chr2_4:63308041-63308060 None:intergenic 45.0%
! CAGTTCTATATGCTGCTTGC+AGG - chr2_4:63308128-63308147 Msa0341520:CDS 45.0%
!! AATACCTTCTGGGATGTCAC+AGG + chr2_4:63308240-63308259 None:intergenic 45.0%
TGCTCTTCAACGTACCTGTT+TGG - chr2_4:63308501-63308520 Msa0341520:intron 45.0%
AGTAGCACACCAATCCAAAC+AGG + chr2_4:63308518-63308537 None:intergenic 45.0%
GGTCTTGCAATTTCTCTCCT+TGG - chr2_4:63308827-63308846 Msa0341520:CDS 45.0%
AAGTGCCTTTGCTCTTATGG+TGG - chr2_4:63309187-63309206 Msa0341520:intron 45.0%
GAAAGCCACCATAAGAGCAA+AGG + chr2_4:63309195-63309214 None:intergenic 45.0%
GGAATTGCTTTGCTTGCATC+AGG - chr2_4:63309477-63309496 Msa0341520:intron 45.0%
ACGATAACAGGAACCTATGC+AGG - chr2_4:63309510-63309529 Msa0341520:intron 45.0%
CGATAACAGGAACCTATGCA+GGG - chr2_4:63309511-63309530 Msa0341520:intron 45.0%
TTGATTTACGACTGACGCCA+TGG - chr2_4:63309665-63309684 Msa0341520:CDS 45.0%
TTGATTGTTGCGGTCATTGG+TGG - chr2_4:63309730-63309749 Msa0341520:intron 45.0%
AGGAGTGGTACCAAAGCAAA+GGG + chr2_4:63310208-63310227 None:intergenic 45.0%
CTACTAGTGAACTTGAGGAG+TGG + chr2_4:63310223-63310242 None:intergenic 45.0%
! AGGCCCATTTCTGACCTTTT+TGG + chr2_4:63310384-63310403 None:intergenic 45.0%
GACAGATAGTAGGTCAGACT+CGG - chr2_4:63310412-63310431 Msa0341520:intron 45.0%
ACAGATAGTAGGTCAGACTC+GGG - chr2_4:63310413-63310432 Msa0341520:intron 45.0%
TGCAGATATCCGCCATTACT+TGG - chr2_4:63310543-63310562 Msa0341520:intron 45.0%
! ATTGTGGCCAAGGTGTTTCT+TGG - chr2_4:63310650-63310669 Msa0341520:CDS 45.0%
! TTGTGGCCAAGGTGTTTCTT+GGG - chr2_4:63310651-63310670 Msa0341520:CDS 45.0%
!! CAAAAATAAAAAAAAAATAA+GGG + chr2_4:63307228-63307247 None:intergenic 5.0%
!! ACAAAAATAAAAAAAAAATA+AGG + chr2_4:63307229-63307248 None:intergenic 5.0%
!!! ATTTTTTTTTTATTTTTGTT+TGG - chr2_4:63307230-63307249 Msa0341520:CDS 5.0%
AAAGAGAATATGGCTGCCCC+AGG - chr2_4:63307066-63307085 Msa0341520:CDS 50.0%
GCCCCAGGTTCTTCTAATTC+TGG - chr2_4:63307081-63307100 Msa0341520:CDS 50.0%
!! CAATAAGCGGGGCATTGGAA+AGG + chr2_4:63307143-63307162 None:intergenic 50.0%
GAAGGCTTGAGCTTGAGCAT+AGG + chr2_4:63307936-63307955 None:intergenic 50.0%
CAATCGATGGCTGCCAATCT+TGG - chr2_4:63308025-63308044 Msa0341520:intron 50.0%
GCCAATCTTGGAGTGGTTAC+TGG - chr2_4:63308037-63308056 Msa0341520:intron 50.0%
!! TGGATTGGTGTGCTACTGAC+CGG - chr2_4:63308521-63308540 Msa0341520:CDS 50.0%
GAGCATCAATGTGCTGAGTC+CGG + chr2_4:63308543-63308562 None:intergenic 50.0%
!! GCACCACTCCCTTTTAGTTG+CGG + chr2_4:63308803-63308822 None:intergenic 50.0%
!! CTAAAAGGGAGTGGTGCTAC+TGG - chr2_4:63308806-63308825 Msa0341520:intron 50.0%
ACGGCATAACCATAGCACCA+AGG + chr2_4:63308847-63308866 None:intergenic 50.0%
CCACAATCTCTTCCTGCACT+CGG - chr2_4:63308955-63308974 Msa0341520:intron 50.0%
! AAAGTACCAATGCCGAGTGC+AGG + chr2_4:63308970-63308989 None:intergenic 50.0%
!! ACTCGGCATTGGTACTTTCC+AGG - chr2_4:63308972-63308991 Msa0341520:intron 50.0%
TTGATTCCGCGAACTGAACG+TGG + chr2_4:63309004-63309023 None:intergenic 50.0%
ACGTTCAGTTCGCGGAATCA+AGG - chr2_4:63309003-63309022 Msa0341520:CDS 50.0%
CATGACATACTGCCCTGCAT+AGG + chr2_4:63309526-63309545 None:intergenic 50.0%
TACGACTGACGCCATGGATT+CGG - chr2_4:63309671-63309690 Msa0341520:CDS 50.0%
GAGGAGTGGTACCAAAGCAA+AGG + chr2_4:63310209-63310228 None:intergenic 50.0%
GGCATGGCAGTATATTTGGC+CGG - chr2_4:63310689-63310708 Msa0341520:CDS 50.0%
!! CAGGTGCTGTTAGAGCCAAA+AGG + chr2_4:63310757-63310776 None:intergenic 50.0%
TCTGCTGGACTACTTCTCTG+AGG + chr2_4:63310860-63310879 None:intergenic 50.0%
ATGGACGGAAACCCCTCCAA+AGG - chr2_4:63307340-63307359 Msa0341520:intron 55.0%
GATGGCTGCCAATCTTGGAG+TGG - chr2_4:63308030-63308049 Msa0341520:intron 55.0%
TGGGATGTCACAGGCCACTA+TGG + chr2_4:63308231-63308250 None:intergenic 55.0%
!!! GCGTGTTTTTGGGCTGAGCT+TGG - chr2_4:63308731-63308750 Msa0341520:intron 55.0%
GTGCCGCAACTAAAAGGGAG+TGG - chr2_4:63308797-63308816 Msa0341520:intron 55.0%
GCAGGAAGAGATTGTGGCTG+AGG + chr2_4:63308952-63308971 None:intergenic 55.0%
CCGAGTGCAGGAAGAGATTG+TGG + chr2_4:63308958-63308977 None:intergenic 55.0%
TCTCTTCCTGCACTCGGCAT+TGG - chr2_4:63308961-63308980 Msa0341520:intron 55.0%
TGCAGGGCAGTATGTCATGC+AGG - chr2_4:63309527-63309546 Msa0341520:intron 55.0%
TTAAGTAGAGGCCGTGCACG+TGG - chr2_4:63310007-63310026 Msa0341520:intron 55.0%
GGCGTCAATAAGCGGGGCAT+TGG + chr2_4:63307148-63307167 None:intergenic 60.0%
! TCAGTTTGGGGCCCCGTTAG+TGG + chr2_4:63307306-63307325 None:intergenic 60.0%
GTGGCCTGTGACATCCCAGA+AGG - chr2_4:63308233-63308252 Msa0341520:intron 60.0%
! CGGTCATTGGTGGCTCTGCT+GGG - chr2_4:63309740-63309759 Msa0341520:intron 60.0%
! GGTCATTGGTGGCTCTGCTG+GGG - chr2_4:63309741-63309760 Msa0341520:intron 60.0%
! GCGGTCATTGGTGGCTCTGC+TGG - chr2_4:63309739-63309758 Msa0341520:intron 65.0%
! ATTGGTGGCTCTGCTGGGGC+TGG - chr2_4:63309745-63309764 Msa0341520:intron 65.0%
! TTGGTGGCTCTGCTGGGGCT+GGG - chr2_4:63309746-63309765 Msa0341520:intron 65.0%
! GGGGCCCCGTTAGTGGACAG+TGG + chr2_4:63307299-63307318 None:intergenic 70.0%
! TGGTGGCTCTGCTGGGGCTG+GGG - chr2_4:63309747-63309766 Msa0341520:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 63306717 63311123 63306717 ID=Msa0341520;Name=Msa0341520
chr2_4 mRNA 63306717 63311123 63306717 ID=Msa0341520-mRNA-1;Parent=Msa0341520;Name=Msa0341520-mRNA-1;_AED=0.17;_eAED=0.17;_QI=115|1|1|1|0.92|0.85|14|234|545
chr2_4 exon 63306717 63307292 63306717 ID=Msa0341520-mRNA-1:exon:20232;Parent=Msa0341520-mRNA-1
chr2_4 exon 63307561 63307656 63307561 ID=Msa0341520-mRNA-1:exon:20231;Parent=Msa0341520-mRNA-1
chr2_4 exon 63308051 63308182 63308051 ID=Msa0341520-mRNA-1:exon:20230;Parent=Msa0341520-mRNA-1
chr2_4 exon 63308292 63308396 63308292 ID=Msa0341520-mRNA-1:exon:20229;Parent=Msa0341520-mRNA-1
chr2_4 exon 63308506 63308679 63308506 ID=Msa0341520-mRNA-1:exon:20228;Parent=Msa0341520-mRNA-1
chr2_4 exon 63308816 63308885 63308816 ID=Msa0341520-mRNA-1:exon:20227;Parent=Msa0341520-mRNA-1
chr2_4 exon 63308976 63309157 63308976 ID=Msa0341520-mRNA-1:exon:20226;Parent=Msa0341520-mRNA-1
chr2_4 exon 63309257 63309366 63309257 ID=Msa0341520-mRNA-1:exon:20225;Parent=Msa0341520-mRNA-1
chr2_4 exon 63309586 63309690 63309586 ID=Msa0341520-mRNA-1:exon:20224;Parent=Msa0341520-mRNA-1
chr2_4 exon 63309782 63309860 63309782 ID=Msa0341520-mRNA-1:exon:20223;Parent=Msa0341520-mRNA-1
chr2_4 exon 63309959 63309999 63309959 ID=Msa0341520-mRNA-1:exon:20222;Parent=Msa0341520-mRNA-1
chr2_4 exon 63310106 63310184 63310106 ID=Msa0341520-mRNA-1:exon:20221;Parent=Msa0341520-mRNA-1
chr2_4 exon 63310643 63310774 63310643 ID=Msa0341520-mRNA-1:exon:20220;Parent=Msa0341520-mRNA-1
chr2_4 exon 63311018 63311123 63311018 ID=Msa0341520-mRNA-1:exon:20219;Parent=Msa0341520-mRNA-1
chr2_4 five_prime_UTR 63311018 63311123 63311018 ID=Msa0341520-mRNA-1:five_prime_utr;Parent=Msa0341520-mRNA-1
chr2_4 five_prime_UTR 63310766 63310774 63310766 ID=Msa0341520-mRNA-1:five_prime_utr;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63310643 63310765 63310643 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63310106 63310184 63310106 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63309959 63309999 63309959 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63309782 63309860 63309782 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63309586 63309690 63309586 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63309257 63309366 63309257 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63308976 63309157 63308976 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63308816 63308885 63308816 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63308506 63308679 63308506 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63308292 63308396 63308292 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63308051 63308182 63308051 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63307561 63307656 63307561 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 CDS 63306951 63307292 63306951 ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1
chr2_4 three_prime_UTR 63306717 63306950 63306717 ID=Msa0341520-mRNA-1:three_prime_utr;Parent=Msa0341520-mRNA-1
Gene Sequence

>Msa0341520

ATGGCTGCCCCAGGTTCTTCTAATTCTGGGCAGCCACAATTCATTTCAAGCACCGGAAACAGAAACCTTTCCAATGCCCCGCTTATTGACGCCACAAATACTGATCAAATTGTTGTCCCTGATAGGACAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGATTTCTTGTTTCCATTGCATACATAGATCCAGGAAACTTTGAGACGGATCTACAATCTGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCATCATGTGCTGCTCTTGTAATTCAATCGATGGCTGCCAATCTTGGAGTGGTTACTGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAATATTCGCGGGTGTCAAACTTTATTCTTTGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATCCCAGAAGTGATTGGTACAGCCTTTGCGTTAAATATGCTCTTCAACGTACCTGTTTGGATTGGTGTGCTACTGACCGGACTCAGCACATTGATGCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCCTTTCTTGTGTTTACAATTGCTGCGTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTGTAAAGGGTCTTTTTGTGCCGCAACTAAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCTCTCCTTGGTGCTATGGTTATGCCCCACAATCTCTTCCTGCACTCGGCATTGGTACTTTCCAGGAAAATACCACGTTCAGTTCGCGGAATCAAGGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCTTTCCTCATAAATGTTTCTGTTATTTCTGTAAGTGGCGCCGTTTGCAATTCTCCGAATATAAATGAAGAAGATCAAATGAGCTGTCAGGATTTAGATCTCAACAAAGCTTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAATTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACGATAACAGGAACCTATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGACTGACGCCATGGATTCGGAATATGCTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCTGGGGAGCTCATAATAATTGCATCTATGATCCTATCATTTGAGCTTCCCTTTGCTTTGGTACCACTCCTCAAGTTCACTAGTAGCAAAACCAAGATGGGTGTACATGTTAACTCTATCATGATATCCGCCATTACTTGGATAATCGGTTCTCTTATTATGGTTATTAATATATACTACTTAATGAATGGTTTCATCAAGCTACTTATTCATAGTGACATAGAAATTGTGGCCAAGGTGTTTCTTGGGATATTAGGATTTTCAGGCATGGCAGTATATTTGGCCGGTATAGCATATCTTGTGCTTCGCAAAAATAAAGAGGGTACACACCTTTTGGCTCTAACAGCACCTGAAAGTCAGCAAATGACAAATGAACAAGTAAATGGATCAATCTATTCTCTTCAAAGAGAAGACATAGTAAACATGCAATTGCCTCAGAGAAGTAGTCCAGCAGATCTTGACTGA

Protein sequence

>Msa0341520

MAAPGSSNSGQPQFISSTGNRNLSNAPLIDATNTDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRAEYSRVSNFILWVIAEIAIVACDIPEVIGTAFALNMLFNVPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFWAELGYAKPDAKEVVKGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCNSPNINEEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLTPWIRNMLTRCLAIVPSLIVAVIGGSAGAGELIIIASMILSFELPFALVPLLKFTSSKTKMGVHVNSIMISAITWIIGSLIMVINIYYLMNGFIKLLIHSDIEIVAKVFLGILGFSGMAVYLAGIAYLVLRKNKEGTHLLALTAPESQQMTNEQVNGSIYSLQREDIVNMQLPQRSSPADLD*