Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341520 | KEH39635.1 | 98.899 | 545 | 6 | 0 | 1 | 545 | 26 | 570 | 0.0 | 1097 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341520 | sp|Q9S9N8|NRAM6_ARATH | 79.238 | 525 | 96 | 2 | 16 | 538 | 6 | 519 | 0.0 | 859 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006470 | Msa0341520 | 0.833920 | 4.040588e-56 | -8.615850e-47 |
Msa0021980 | Msa0341520 | 0.824717 | 6.939367e-54 | -8.615850e-47 |
Msa0121460 | Msa0341520 | 0.828038 | 1.122799e-54 | -8.615850e-47 |
Msa0216550 | Msa0341520 | 0.806414 | 8.320862e-50 | -8.615850e-47 |
Msa0218480 | Msa0341520 | 0.803493 | 3.396296e-49 | -8.615850e-47 |
Msa0218590 | Msa0341520 | 0.803563 | 3.283836e-49 | -8.615850e-47 |
Msa0225370 | Msa0341520 | 0.861012 | 1.383098e-63 | -8.615850e-47 |
Msa0241580 | Msa0341520 | 0.809738 | 1.631331e-50 | -8.615850e-47 |
Msa0256410 | Msa0341520 | 0.800599 | 1.336585e-48 | -8.615850e-47 |
Msa0259620 | Msa0341520 | 0.878621 | 2.421371e-69 | -8.615850e-47 |
Msa0264240 | Msa0341520 | 0.834102 | 3.639930e-56 | -8.615850e-47 |
Msa0266380 | Msa0341520 | 0.845632 | 3.598003e-59 | -8.615850e-47 |
Msa0279490 | Msa0341520 | 0.810405 | 1.171492e-50 | -8.615850e-47 |
Msa0295850 | Msa0341520 | 0.808818 | 2.569003e-50 | -8.615850e-47 |
Msa0305580 | Msa0341520 | 0.936499 | 1.573935e-97 | -8.615850e-47 |
Msa0334170 | Msa0341520 | 0.805302 | 1.425380e-49 | -8.615850e-47 |
Msa0339560 | Msa0341520 | 0.837256 | 5.787175e-57 | -8.615850e-47 |
Msa0341520 | Msa0341860 | 0.837616 | 4.680614e-57 | -8.615850e-47 |
Msa0341520 | Msa0382670 | -0.819632 | 1.048915e-52 | -8.615850e-47 |
Msa0341520 | Msa0401570 | 0.809719 | 1.646867e-50 | -8.615850e-47 |
Msa0341520 | Msa0404210 | 0.808082 | 3.688117e-50 | -8.615850e-47 |
Msa0341520 | Msa0428530 | 0.817456 | 3.266707e-52 | -8.615850e-47 |
Msa0341520 | Msa0432260 | 0.801370 | 9.298350e-49 | -8.615850e-47 |
Msa0341520 | Msa0436830 | 0.805200 | 1.497434e-49 | -8.615850e-47 |
Msa0341520 | Msa0475390 | 0.808799 | 2.593673e-50 | -8.615850e-47 |
Msa0341520 | Msa0521100 | 0.800885 | 1.168349e-48 | -8.615850e-47 |
Msa0341520 | Msa0540160 | 0.838745 | 2.395279e-57 | -8.615850e-47 |
Msa0341520 | Msa0544930 | 0.822778 | 1.974793e-53 | -8.615850e-47 |
Msa0341520 | Msa0578890 | 0.802918 | 4.466828e-49 | -8.615850e-47 |
Msa0341520 | Msa0610850 | 0.812032 | 5.198043e-51 | -8.615850e-47 |
Msa0341520 | Msa0621190 | -0.827744 | 1.320944e-54 | -8.615850e-47 |
Msa0341520 | Msa0623360 | 0.822232 | 2.644137e-53 | -8.615850e-47 |
Msa0341520 | Msa0641030 | 0.816613 | 5.053715e-52 | -8.615850e-47 |
Msa0341520 | Msa0646180 | 0.812984 | 3.219307e-51 | -8.615850e-47 |
Msa0341520 | Msa0651340 | 0.802618 | 5.150869e-49 | -8.615850e-47 |
Msa0341520 | Msa0679560 | 0.813869 | 2.057852e-51 | -8.615850e-47 |
Msa0341520 | Msa0883670 | 0.800954 | 1.131026e-48 | -8.615850e-47 |
Msa0341520 | Msa0912470 | 0.804008 | 2.654656e-49 | -8.615850e-47 |
Msa0341520 | Msa0957800 | 0.809274 | 2.052312e-50 | -8.615850e-47 |
Msa0341520 | Msa1037030 | -0.825933 | 3.577338e-54 | -8.615850e-47 |
Msa0341520 | Msa1038110 | 0.809445 | 1.885237e-50 | -8.615850e-47 |
Msa0341520 | Msa1041550 | 0.824070 | 9.848683e-54 | -8.615850e-47 |
Msa0341520 | Msa1055710 | 0.839142 | 1.890865e-57 | -8.615850e-47 |
Msa0341520 | Msa1081100 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
Msa0341520 | Msa1081530 | 0.865485 | 5.708162e-65 | -8.615850e-47 |
Msa0341520 | Msa1164520 | -0.800905 | 1.157329e-48 | -8.615850e-47 |
Msa0341520 | Msa1190460 | 0.817458 | 3.263798e-52 | -8.615850e-47 |
Msa0341520 | Msa1201370 | -0.802766 | 4.801057e-49 | -8.615850e-47 |
Msa0341520 | Msa1232330 | 0.807957 | 3.922246e-50 | -8.615850e-47 |
Msa0341520 | Msa1244300 | 0.815904 | 7.280528e-52 | -8.615850e-47 |
Msa0341520 | Msa1263610 | 0.826557 | 2.540787e-54 | -8.615850e-47 |
Msa0341520 | Msa1275340 | 0.804511 | 2.085528e-49 | -8.615850e-47 |
Msa0341520 | Msa1276070 | 0.800158 | 1.643168e-48 | -8.615850e-47 |
Msa0341520 | Msa1311550 | 0.800195 | 1.614707e-48 | -8.615850e-47 |
Msa0341520 | Msa1357720 | 0.842720 | 2.176561e-58 | -8.615850e-47 |
Msa0341520 | Msa1359880 | 0.810501 | 1.117136e-50 | -8.615850e-47 |
Msa0341520 | Msa1387750 | -0.806894 | 6.590865e-50 | -8.615850e-47 |
Msa0341520 | Msa1445250 | 0.811844 | 5.712992e-51 | -8.615850e-47 |
Msa0341520 | Msa1457450 | 0.829234 | 5.769370e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341520 | MtrunA17_Chr2g0333811 | 98.899 | 545 | 6 | 0 | 1 | 545 | 1 | 545 | 0.0 | 1097 |
Msa0341520 | MtrunA17_Chr3g0124991 | 59.010 | 505 | 196 | 2 | 41 | 537 | 30 | 531 | 0.0 | 617 |
Msa0341520 | MtrunA17_Chr3g0124971 | 58.869 | 513 | 201 | 3 | 30 | 537 | 31 | 538 | 0.0 | 587 |
Msa0341520 | MtrunA17_Chr3g0134491 | 41.453 | 468 | 252 | 8 | 31 | 492 | 54 | 505 | 2.10e-107 | 331 |
Msa0341520 | MtrunA17_Chr4g0053701 | 42.890 | 436 | 229 | 8 | 30 | 456 | 40 | 464 | 3.52e-106 | 328 |
Msa0341520 | MtrunA17_Chr5g0401611 | 41.667 | 456 | 244 | 8 | 44 | 492 | 51 | 491 | 5.48e-106 | 327 |
Msa0341520 | MtrunA17_Chr8g0347551 | 37.924 | 472 | 266 | 10 | 30 | 492 | 69 | 522 | 3.46e-97 | 305 |
Msa0341520 | MtrunA17_Chr7g0264231 | 26.601 | 406 | 266 | 12 | 54 | 452 | 38 | 418 | 1.50e-32 | 133 |
Msa0341520 | MtrunA17_Chr2g0309271 | 27.344 | 384 | 248 | 13 | 90 | 464 | 3 | 364 | 1.27e-31 | 127 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341520 | AT1G15960.1 | 79.238 | 525 | 96 | 2 | 16 | 538 | 6 | 519 | 0.0 | 859 |
Msa0341520 | AT1G80830.1 | 77.289 | 546 | 109 | 4 | 1 | 545 | 1 | 532 | 0.0 | 854 |
Msa0341520 | AT1G80830.2 | 77.289 | 546 | 109 | 4 | 1 | 545 | 1 | 532 | 0.0 | 854 |
Msa0341520 | AT5G67330.1 | 41.943 | 422 | 231 | 6 | 42 | 456 | 46 | 460 | 2.28e-105 | 326 |
Msa0341520 | AT1G47240.1 | 39.958 | 473 | 261 | 9 | 30 | 496 | 53 | 508 | 3.92e-105 | 326 |
Msa0341520 | AT2G23150.1 | 40.263 | 457 | 253 | 8 | 44 | 494 | 52 | 494 | 2.11e-101 | 315 |
Msa0341520 | AT4G18790.1 | 39.046 | 461 | 249 | 10 | 44 | 492 | 66 | 506 | 7.00e-97 | 304 |
Msa0341520 | AT5G03280.1 | 27.865 | 384 | 248 | 9 | 54 | 427 | 24 | 388 | 1.01e-33 | 137 |
Find 145 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGTCATTTGCTGACTTTC+AGG | 0.118858 | 2_4:+63307045 | None:intergenic |
GCCCCAGGTTCTTCTAATTC+TGG | 0.123902 | 2_4:-63310737 | Msa0341520:CDS |
ATTGGTGGCTCTGCTGGGGC+TGG | 0.172769 | 2_4:-63308073 | Msa0341520:CDS |
GATAATCGGTTCTCTTATTA+TGG | 0.190853 | 2_4:-63307253 | Msa0341520:CDS |
TGGACTGATTCTAATTATAT+TGG | 0.207669 | 2_4:-63306768 | Msa0341520:three_prime_UTR |
TTCAGGCATGGCAGTATATT+TGG | 0.208592 | 2_4:-63307133 | Msa0341520:CDS |
TTGGTGGCTCTGCTGGGGCT+GGG | 0.236113 | 2_4:-63308072 | Msa0341520:CDS |
GCGGTCATTGGTGGCTCTGC+TGG | 0.238481 | 2_4:-63308079 | Msa0341520:CDS |
GGGTGTCAAACTTTATTCTT+TGG | 0.241037 | 2_4:-63309629 | Msa0341520:CDS |
GATCTTATCTTACAGTTTCC+TGG | 0.244897 | 2_4:+63310093 | None:intergenic |
ATTGGAAAGGTTTCTGTTTC+CGG | 0.246028 | 2_4:+63310691 | None:intergenic |
AGAAAGTGCCTTTGCTCTTA+TGG | 0.256302 | 2_4:-63308634 | Msa0341520:CDS |
CTCTTAGCATTACAGCAATA+TGG | 0.276711 | 2_4:-63309258 | Msa0341520:CDS |
TGGTGGCTCTGCTGGGGCTG+GGG | 0.283239 | 2_4:-63308071 | Msa0341520:CDS |
AGAGTTGACAATAGATTTGT+AGG | 0.285885 | 2_4:-63306860 | Msa0341520:three_prime_UTR |
ATGACAAATGAACAAGTAAA+TGG | 0.298259 | 2_4:-63307030 | Msa0341520:CDS |
AAGGTGTTTCTTGGGATATT+AGG | 0.304324 | 2_4:-63307159 | Msa0341520:CDS |
AAATGGAGTTCAAAATTGTT+TGG | 0.313605 | 2_4:-63308362 | Msa0341520:CDS |
CTTAGAATGTCTTGGGGAAA+TGG | 0.318045 | 2_4:-63308379 | Msa0341520:intron |
TCATGTGATGCCTATCATAA+TGG | 0.322662 | 2_4:-63306788 | Msa0341520:three_prime_UTR |
TAAAGAGGGTACACACCTTT+TGG | 0.324952 | 2_4:-63307079 | Msa0341520:CDS |
CCCCAGGTTCTTCTAATTCT+GGG | 0.326525 | 2_4:-63310736 | Msa0341520:CDS |
TGATCTTCTTCATTTATATT+CGG | 0.330046 | 2_4:+63308555 | None:intergenic |
GCCAATCTTGGAGTGGTTAC+TGG | 0.337193 | 2_4:-63309781 | Msa0341520:intron |
GGTCTTGCAATTTCTCTCCT+TGG | 0.337870 | 2_4:-63308991 | Msa0341520:CDS |
TCCGCCATTACTTGGATAAT+CGG | 0.341900 | 2_4:-63307267 | Msa0341520:CDS |
TGCTCTTCAACGTACCTGTT+TGG | 0.342285 | 2_4:-63309317 | Msa0341520:CDS |
TCAGTTACTTTGGATCATAT+TGG | 0.346866 | 2_4:-63309842 | Msa0341520:intron |
TTTGCTGCAGAAAGAGAATA+TGG | 0.347393 | 2_4:-63310762 | Msa0341520:intron |
CGGTCATTGGTGGCTCTGCT+GGG | 0.355327 | 2_4:-63308078 | Msa0341520:CDS |
TACGACTGACGCCATGGATT+CGG | 0.357741 | 2_4:-63308147 | Msa0341520:CDS |
GGAATTGCTTTGCTTGCATC+AGG | 0.359030 | 2_4:-63308341 | Msa0341520:CDS |
ATTTGAGCTTCCCTTTGCTT+TGG | 0.359502 | 2_4:-63307623 | Msa0341520:CDS |
ACTCGGCATTGGTACTTTCC+AGG | 0.364353 | 2_4:-63308846 | Msa0341520:CDS |
ATTGTGGCCAAGGTGTTTCT+TGG | 0.367006 | 2_4:-63307168 | Msa0341520:CDS |
GGACTGATTCTAATTATATT+GGG | 0.368823 | 2_4:-63306767 | Msa0341520:three_prime_UTR |
GCCATTACTTAGAATGTCTT+GGG | 0.369772 | 2_4:-63308386 | Msa0341520:intron |
CAATCGATGGCTGCCAATCT+TGG | 0.372875 | 2_4:-63309793 | Msa0341520:CDS |
TGCAGATATCCGCCATTACT+TGG | 0.375632 | 2_4:-63307275 | Msa0341520:intron |
AGTTTGATTGTTGCGGTCAT+TGG | 0.376126 | 2_4:-63308091 | Msa0341520:CDS |
AACAATCAAACTAGGAACTA+TGG | 0.376164 | 2_4:+63308102 | None:intergenic |
GGTGTCAAACTTTATTCTTT+GGG | 0.378048 | 2_4:-63309628 | Msa0341520:CDS |
GGTCAAAGTTCTACGATAAC+AGG | 0.379774 | 2_4:-63308320 | Msa0341520:CDS |
GTTTCTGTTATTTCTGTAAG+TGG | 0.391479 | 2_4:-63308594 | Msa0341520:CDS |
AATTTCTCTCCTTGGTGCTA+TGG | 0.403043 | 2_4:-63308983 | Msa0341520:CDS |
TCTTAGCATTACAGCAATAT+GGG | 0.404272 | 2_4:-63309257 | Msa0341520:CDS |
TTGTGGCCAAGGTGTTTCTT+GGG | 0.420309 | 2_4:-63307167 | Msa0341520:CDS |
TGGGATGTCACAGGCCACTA+TGG | 0.423728 | 2_4:+63309590 | None:intergenic |
AATATATACTACTTAATGAA+TGG | 0.424385 | 2_4:-63307225 | Msa0341520:CDS |
TAGAATCAGTCCATTATGAT+AGG | 0.430753 | 2_4:+63306778 | None:intergenic |
CAAAGGGAAGCTCAAATGAT+AGG | 0.430883 | 2_4:+63307629 | None:intergenic |
GTTGAGACGGATCTACAATC+TGG | 0.432234 | 2_4:-63309978 | Msa0341520:CDS |
TGCCATTACTTAGAATGTCT+TGG | 0.443971 | 2_4:-63308387 | Msa0341520:intron |
ACCAGTAACCACTCCAAGAT+TGG | 0.444301 | 2_4:+63309780 | None:intergenic |
AACAATTTGATCAGTATTTG+TGG | 0.444749 | 2_4:+63310652 | None:intergenic |
AATTCATCTCAATACCTTCT+GGG | 0.447355 | 2_4:+63309571 | None:intergenic |
TTTACAACTTCTTTAGCATC+AGG | 0.449320 | 2_4:+63309054 | None:intergenic |
ACGTTCAGTTCGCGGAATCA+AGG | 0.457249 | 2_4:-63308815 | Msa0341520:intron |
CTAAAAGGGAGTGGTGCTAC+TGG | 0.461708 | 2_4:-63309012 | Msa0341520:CDS |
TTATTTGCATACATGGGGCC+TGG | 0.468558 | 2_4:-63310144 | Msa0341520:CDS |
GGCGTCAATAAGCGGGGCAT+TGG | 0.469639 | 2_4:+63310673 | None:intergenic |
TCCATTGCATACATAGATCC+AGG | 0.477792 | 2_4:-63310111 | Msa0341520:CDS |
ACGATAACAGGAACCTATGC+AGG | 0.487911 | 2_4:-63308308 | Msa0341520:CDS |
TATTGCTGAAATTGCCATAG+TGG | 0.492449 | 2_4:-63309604 | Msa0341520:CDS |
AAAATACCACGTTCAGTTCG+CGG | 0.494048 | 2_4:-63308823 | Msa0341520:CDS |
GTTAACATGTACACCCATCT+TGG | 0.495254 | 2_4:+63307570 | None:intergenic |
GTTACTTTGGATCATATTGG+TGG | 0.496123 | 2_4:-63309839 | Msa0341520:CDS |
TCTCTTCCTGCACTCGGCAT+TGG | 0.496228 | 2_4:-63308857 | Msa0341520:CDS |
TTCAACGTACCTGTTTGGAT+TGG | 0.497509 | 2_4:-63309312 | Msa0341520:CDS |
GATGCTAAAGAAGTTGTAAA+GGG | 0.498286 | 2_4:-63309051 | Msa0341520:CDS |
TATTTGTGGCGTCAATAAGC+GGG | 0.501374 | 2_4:+63310666 | None:intergenic |
CACTAGTAGCAAAACCAAGA+TGG | 0.501607 | 2_4:-63307584 | Msa0341520:CDS |
TATTGGGAACATGTGTGAAA+AGG | 0.509568 | 2_4:-63306751 | Msa0341520:three_prime_UTR |
GAGCATCAATGTGCTGAGTC+CGG | 0.509577 | 2_4:+63309278 | None:intergenic |
AGATTGCGTACCAAAGATGT+AGG | 0.511625 | 2_4:+63311007 | None:intergenic |
AGTAGCACACCAATCCAAAC+AGG | 0.511891 | 2_4:+63309303 | None:intergenic |
TGATGCTAAAGAAGTTGTAA+AGG | 0.519740 | 2_4:-63309052 | Msa0341520:CDS |
TTGATTTACGACTGACGCCA+TGG | 0.522886 | 2_4:-63308153 | Msa0341520:CDS |
AGAAGATCAAATGAGCTGTC+AGG | 0.522894 | 2_4:-63308541 | Msa0341520:CDS |
TTGATTGTTGCGGTCATTGG+TGG | 0.523728 | 2_4:-63308088 | Msa0341520:CDS |
AGTTCCTAGTTTGATTGTTG+CGG | 0.526493 | 2_4:-63308098 | Msa0341520:CDS |
TGCCCAGAATTAGAAGAACC+TGG | 0.527178 | 2_4:+63310734 | None:intergenic |
TGTACATGTTAACTCTATCA+TGG | 0.528201 | 2_4:-63307560 | Msa0341520:intron |
CAAAAGAAGAGAGAGTGAGA+AGG | 0.528237 | 2_4:-63311048 | Msa0341520:five_prime_UTR |
CCACAATTCATTTCAAGCAC+CGG | 0.530989 | 2_4:-63310710 | Msa0341520:CDS |
TGACATAGAAATTGTGGCCA+AGG | 0.536322 | 2_4:-63307178 | Msa0341520:CDS |
TCATAGTGACATAGAAATTG+TGG | 0.537613 | 2_4:-63307184 | Msa0341520:CDS |
TGGATTGGTGTGCTACTGAC+CGG | 0.537679 | 2_4:-63309297 | Msa0341520:CDS |
TTGAGACGGATCTACAATCT+GGG | 0.537839 | 2_4:-63309977 | Msa0341520:CDS |
TGGGGCACAATATAAATATG+AGG | 0.538942 | 2_4:-63309958 | Msa0341520:intron |
AAAAGAAGAGAGAGTGAGAA+GGG | 0.543589 | 2_4:-63311047 | Msa0341520:five_prime_UTR |
TGCAGGGCAGTATGTCATGC+AGG | 0.544266 | 2_4:-63308291 | Msa0341520:intron |
GCAATGGAAACAAGAAATCC+AGG | 0.544675 | 2_4:+63310126 | None:intergenic |
AAAGTACCAATGCCGAGTGC+AGG | 0.550845 | 2_4:+63308851 | None:intergenic |
AAGTGCCTTTGCTCTTATGG+TGG | 0.551298 | 2_4:-63308631 | Msa0341520:CDS |
GGCATGGCAGTATATTTGGC+CGG | 0.551698 | 2_4:-63307129 | Msa0341520:CDS |
AGCAATTGTAAACACAAGAA+AGG | 0.554039 | 2_4:+63309110 | None:intergenic |
AAGCACAAGATATGCTATAC+CGG | 0.555109 | 2_4:+63307110 | None:intergenic |
AAATAACAGAAACATTTATG+AGG | 0.555460 | 2_4:+63308604 | None:intergenic |
AGGTTTCACATACTCTAAGT+AGG | 0.556394 | 2_4:+63308493 | None:intergenic |
TCCTGGATCTATGTATGCAA+TGG | 0.557782 | 2_4:+63310110 | None:intergenic |
AAAATTTATTTGCATACATG+GGG | 0.559327 | 2_4:-63310149 | Msa0341520:CDS |
CAATAAGCGGGGCATTGGAA+AGG | 0.560144 | 2_4:+63310678 | None:intergenic |
TTGATTCCGCGAACTGAACG+TGG | 0.568877 | 2_4:+63308817 | None:intergenic |
GCCCAGAATTAGAAGAACCT+GGG | 0.569323 | 2_4:+63310735 | None:intergenic |
AATACCTTCTGGGATGTCAC+AGG | 0.569404 | 2_4:+63309581 | None:intergenic |
CCGGTGCTTGAAATGAATTG+TGG | 0.574049 | 2_4:+63310710 | None:intergenic |
ATAATCACTTGCAGTTGAGA+CGG | 0.574710 | 2_4:-63309991 | Msa0341520:intron |
AGGAGTGGTACCAAAGCAAA+GGG | 0.575001 | 2_4:+63307613 | None:intergenic |
ACTAGTAGCAAAACCAAGAT+GGG | 0.576135 | 2_4:-63307583 | Msa0341520:CDS |
GTGCCGCAACTAAAAGGGAG+TGG | 0.578359 | 2_4:-63309021 | Msa0341520:CDS |
GAGGAGTGGTACCAAAGCAA+AGG | 0.578409 | 2_4:+63307612 | None:intergenic |
TGCTCTTGTAATTCAATCGA+TGG | 0.578489 | 2_4:-63309806 | Msa0341520:CDS |
CAGGTGCTGTTAGAGCCAAA+AGG | 0.580978 | 2_4:+63307064 | None:intergenic |
AAAGAGAATATGGCTGCCCC+AGG | 0.584661 | 2_4:-63310752 | Msa0341520:exon |
CATGACATACTGCCCTGCAT+AGG | 0.585306 | 2_4:+63308295 | None:intergenic |
ATTGTAGAGCTGAATATTCG+CGG | 0.585585 | 2_4:-63309650 | Msa0341520:CDS |
ATGACCGCAACAATCAAACT+AGG | 0.585887 | 2_4:+63308094 | None:intergenic |
GTTAGCATATTCCGAATCCA+TGG | 0.589850 | 2_4:+63308136 | None:intergenic |
GTCAATTAGAAGATTTAATG+CGG | 0.597156 | 2_4:+63306715 | None:intergenic |
TTCACATACTCTAAGTAGGA+AGG | 0.602936 | 2_4:+63308497 | None:intergenic |
TTGTAGAGCTGAATATTCGC+GGG | 0.603523 | 2_4:-63309649 | Msa0341520:CDS |
GTATTTGTGGCGTCAATAAG+CGG | 0.603651 | 2_4:+63310665 | None:intergenic |
TATATTCGGAGAATTGCAAA+CGG | 0.605578 | 2_4:+63308569 | None:intergenic |
GAAGAGCATATTTAACGCAA+AGG | 0.606833 | 2_4:+63309332 | None:intergenic |
CCACAATCTCTTCCTGCACT+CGG | 0.612477 | 2_4:-63308863 | Msa0341520:CDS |
TAATATCCCAAGAAACACCT+TGG | 0.615738 | 2_4:+63307161 | None:intergenic |
AGAACCGATTATCCAAGTAA+TGG | 0.617458 | 2_4:+63307263 | None:intergenic |
GAAAGCCACCATAAGAGCAA+AGG | 0.627298 | 2_4:+63308626 | None:intergenic |
CCGAGTGCAGGAAGAGATTG+TGG | 0.627483 | 2_4:+63308863 | None:intergenic |
GGTCATTGGTGGCTCTGCTG+GGG | 0.630348 | 2_4:-63308077 | Msa0341520:CDS |
TTGTTTGTTTGGATTCTGAG+TGG | 0.634266 | 2_4:+63311078 | None:intergenic |
GATTGCGTACCAAAGATGTA+GGG | 0.635554 | 2_4:+63311008 | None:intergenic |
CCATTACTTAGAATGTCTTG+GGG | 0.636359 | 2_4:-63308385 | Msa0341520:intron |
ACCGATTATCCAAGTAATGG+CGG | 0.641211 | 2_4:+63307266 | None:intergenic |
CTTAGCATTACAGCAATATG+GGG | 0.651366 | 2_4:-63309256 | Msa0341520:intron |
CTACTAGTGAACTTGAGGAG+TGG | 0.652111 | 2_4:+63307598 | None:intergenic |
CCCAGAATTAGAAGAACCTG+GGG | 0.668506 | 2_4:+63310736 | None:intergenic |
GTGGCCTGTGACATCCCAGA+AGG | 0.672235 | 2_4:-63309585 | Msa0341520:intron |
CGATAACAGGAACCTATGCA+GGG | 0.673315 | 2_4:-63308307 | Msa0341520:CDS |
GATGGCTGCCAATCTTGGAG+TGG | 0.683939 | 2_4:-63309788 | Msa0341520:CDS |
ATTTGTGGCGTCAATAAGCG+GGG | 0.691894 | 2_4:+63310667 | None:intergenic |
TCTGCTGGACTACTTCTCTG+AGG | 0.723987 | 2_4:+63306961 | None:intergenic |
TGAGACGGATCTACAATCTG+GGG | 0.726732 | 2_4:-63309976 | Msa0341520:CDS |
ACGGCATAACCATAGCACCA+AGG | 0.756062 | 2_4:+63308974 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTTATTTGCATACAT+GGG | - | chr2_4:63307668-63307687 | Msa0341520:intron | 15.0% |
!! | ACTTTATATACAATTGTTAT+TGG | - | chr2_4:63309368-63309387 | Msa0341520:intron | 15.0% |
!! | AACAACTAGAAAAAAAATTA+TGG | + | chr2_4:63309807-63309826 | None:intergenic | 15.0% |
!!! | AATTTTTTTTCTAGTTGTTT+TGG | - | chr2_4:63309808-63309827 | Msa0341520:CDS | 15.0% |
!! | AATATATACTACTTAATGAA+TGG | - | chr2_4:63310593-63310612 | Msa0341520:intron | 15.0% |
!! | AGTAATAAGAAGAAGAAAAT+TGG | + | chr2_4:63306940-63306959 | None:intergenic | 20.0% |
!!! | CTCTTTCAAAACATTTTATT+TGG | - | chr2_4:63307490-63307509 | Msa0341520:intron | 20.0% |
!! | ATAGAAAACACATAAATGAA+TGG | + | chr2_4:63307629-63307648 | None:intergenic | 20.0% |
!! | GAAAAATTTATTTGCATACA+TGG | - | chr2_4:63307667-63307686 | Msa0341520:intron | 20.0% |
!! | AAAATTTATTTGCATACATG+GGG | - | chr2_4:63307669-63307688 | Msa0341520:intron | 20.0% |
!!! | ACTTTTACTAAATAAAGTTG+TGG | - | chr2_4:63308083-63308102 | Msa0341520:CDS | 20.0% |
!!! | ATAAACACACTACATTTTAT+AGG | - | chr2_4:63308314-63308333 | Msa0341520:CDS | 20.0% |
!!! | TAAACACACTACATTTTATA+GGG | - | chr2_4:63308315-63308334 | Msa0341520:CDS | 20.0% |
!!! | CTTAAGGCTTTATAAAAATT+TGG | + | chr2_4:63308366-63308385 | None:intergenic | 20.0% |
!!! | CATATTTTCCATTTTTCTTT+CGG | - | chr2_4:63308395-63308414 | Msa0341520:intron | 20.0% |
!!! | AGAATACATTTTAAGAGAAA+AGG | + | chr2_4:63308904-63308923 | None:intergenic | 20.0% |
!! | ATAAATGTTGAAAGAGAAAA+AGG | + | chr2_4:63309060-63309079 | None:intergenic | 20.0% |
!!! | ATTTAACAATTTTCTTTGAC+AGG | - | chr2_4:63309139-63309158 | Msa0341520:intron | 20.0% |
!! | AAATAACAGAAACATTTATG+AGG | + | chr2_4:63309217-63309236 | None:intergenic | 20.0% |
!! | TGATCTTCTTCATTTATATT+CGG | + | chr2_4:63309266-63309285 | None:intergenic | 20.0% |
!!! | ATATACAATTGTTATTGGTA+AGG | - | chr2_4:63309373-63309392 | Msa0341520:intron | 20.0% |
!!! | CAATTTTTTTTCCTTCTTTA+GGG | - | chr2_4:63309637-63309656 | Msa0341520:CDS | 20.0% |
!! | AACAAAAATATTTGTCAACA+TGG | - | chr2_4:63310065-63310084 | Msa0341520:intron | 20.0% |
!!! | TTTGTCTTTTGTTGTTTGTT+TGG | + | chr2_4:63306754-63306773 | None:intergenic | 25.0% |
! | GATTTCAATTACATCATCTT+TGG | - | chr2_4:63306861-63306880 | Msa0341520:three_prime_UTR | 25.0% |
! | AACAATTTGATCAGTATTTG+TGG | + | chr2_4:63307169-63307188 | None:intergenic | 25.0% |
! | ATCCAAAGTAACTGAAAAAA+TGG | + | chr2_4:63307971-63307990 | None:intergenic | 25.0% |
! | AAATATGGTTAGTGTTCTTA+AGG | + | chr2_4:63308382-63308401 | None:intergenic | 25.0% |
! | CGAAAGAAAAATGGAAAATA+TGG | + | chr2_4:63308397-63308416 | None:intergenic | 25.0% |
! | AGTTTACTGTATTCATTCTA+TGG | - | chr2_4:63308586-63308605 | Msa0341520:CDS | 25.0% |
! | GATCAACAACAAAACAAAAA+TGG | + | chr2_4:63308661-63308680 | None:intergenic | 25.0% |
!!! | TTTTTGTTTTGTTGTTGATC+AGG | - | chr2_4:63308661-63308680 | Msa0341520:intron | 25.0% |
! | AAGAGAAAAGGAAAACAAAA+TGG | + | chr2_4:63308892-63308911 | None:intergenic | 25.0% |
! | TTATGACATTACTACAATCA+CGG | + | chr2_4:63309083-63309102 | None:intergenic | 25.0% |
! | TTACAATATACACAAGTAAC+AGG | + | chr2_4:63309348-63309367 | None:intergenic | 25.0% |
! | AAATGGAGTTCAAAATTGTT+TGG | - | chr2_4:63309456-63309475 | Msa0341520:intron | 25.0% |
! | GAAGAATTAGAAACATCAAA+AGG | + | chr2_4:63309612-63309631 | None:intergenic | 25.0% |
! | AAGAAGGAAAAAAAATTGCA+GGG | + | chr2_4:63309635-63309654 | None:intergenic | 25.0% |
! | AAAGAAGGAAAAAAAATTGC+AGG | + | chr2_4:63309636-63309655 | None:intergenic | 25.0% |
!!! | GCAATTTTTTTTCCTTCTTT+AGG | - | chr2_4:63309636-63309655 | Msa0341520:CDS | 25.0% |
! | CTAGAAAAAAAATTATGGCA+AGG | + | chr2_4:63309802-63309821 | None:intergenic | 25.0% |
! | AGACATATTGTCAAGTAAAA+AGG | + | chr2_4:63309854-63309873 | None:intergenic | 25.0% |
! | TTCCAAAATATTAGTCATAG+AGG | + | chr2_4:63310469-63310488 | None:intergenic | 25.0% |
! | ATGACAAATGAACAAGTAAA+TGG | - | chr2_4:63310788-63310807 | Msa0341520:intron | 25.0% |
!! | TGGACTGATTCTAATTATAT+TGG | - | chr2_4:63311050-63311069 | Msa0341520:five_prime_UTR | 25.0% |
!! | GGACTGATTCTAATTATATT+GGG | - | chr2_4:63311051-63311070 | Msa0341520:five_prime_UTR | 25.0% |
! | AAAATTGGTGAATTGAGTTG+AGG | + | chr2_4:63306925-63306944 | None:intergenic | 30.0% |
AAGGGATTGAATGAGAATTA+AGG | + | chr2_4:63307210-63307229 | None:intergenic | 30.0% | |
AAATATTTGCGACATTCCTT+TGG | + | chr2_4:63307359-63307378 | None:intergenic | 30.0% | |
AAACAAACAACTCTTGACAT+TGG | + | chr2_4:63307598-63307617 | None:intergenic | 30.0% | |
GAAAACACATAAATGAATGG+TGG | + | chr2_4:63307626-63307645 | None:intergenic | 30.0% | |
! | ATGTGTTTTCTATTTTGCAG+AGG | - | chr2_4:63307636-63307655 | Msa0341520:CDS | 30.0% |
TTATAGTACTTATGATCACG+AGG | - | chr2_4:63307905-63307924 | Msa0341520:intron | 30.0% | |
AAATGGTGAAAAAGAGATGA+AGG | + | chr2_4:63307954-63307973 | None:intergenic | 30.0% | |
!!! | CACCATTTTTTCAGTTACTT+TGG | - | chr2_4:63307966-63307985 | Msa0341520:intron | 30.0% |
! | TCAGTTACTTTGGATCATAT+TGG | - | chr2_4:63307976-63307995 | Msa0341520:intron | 30.0% |
TTACTAAATAAAGTTGTGGC+TGG | - | chr2_4:63308087-63308106 | Msa0341520:CDS | 30.0% | |
CATATAGAACTGAATGAATC+AGG | + | chr2_4:63308120-63308139 | None:intergenic | 30.0% | |
GGTGTCAAACTTTATTCTTT+GGG | - | chr2_4:63308190-63308209 | Msa0341520:intron | 30.0% | |
AATTCATCTCAATACCTTCT+GGG | + | chr2_4:63308250-63308269 | None:intergenic | 30.0% | |
AAATTCATCTCAATACCTTC+TGG | + | chr2_4:63308251-63308270 | None:intergenic | 30.0% | |
TAGGGATTTATTTAGTGCTT+AGG | - | chr2_4:63308333-63308352 | Msa0341520:CDS | 30.0% | |
TTATTTAGTGCTTAGGATTG+AGG | - | chr2_4:63308340-63308359 | Msa0341520:CDS | 30.0% | |
TTGTACATATATGCAGTGAT+TGG | - | chr2_4:63308458-63308477 | Msa0341520:intron | 30.0% | |
TCTTAGCATTACAGCAATAT+GGG | - | chr2_4:63308561-63308580 | Msa0341520:CDS | 30.0% | |
TATGGTTTGACATCATAAAG+AGG | - | chr2_4:63308604-63308623 | Msa0341520:CDS | 30.0% | |
AGCAATTGTAAACACAAGAA+AGG | + | chr2_4:63308711-63308730 | None:intergenic | 30.0% | |
TTTACAACTTCTTTAGCATC+AGG | + | chr2_4:63308767-63308786 | None:intergenic | 30.0% | |
TGATGCTAAAGAAGTTGTAA+AGG | - | chr2_4:63308766-63308785 | Msa0341520:intron | 30.0% | |
GATGCTAAAGAAGTTGTAAA+GGG | - | chr2_4:63308767-63308786 | Msa0341520:intron | 30.0% | |
AAGAAGAGATGAAGAACTAA+CGG | + | chr2_4:63308866-63308885 | None:intergenic | 30.0% | |
! | GGAAAGTACATATAGAATCA+TGG | + | chr2_4:63308931-63308950 | None:intergenic | 30.0% |
TGTCATAAGTCTGTAAATTG+TGG | - | chr2_4:63309095-63309114 | Msa0341520:CDS | 30.0% | |
! | TAACAATTTTCTTTGACAGG+AGG | - | chr2_4:63309142-63309161 | Msa0341520:intron | 30.0% |
!! | GTTTCTGTTATTTCTGTAAG+TGG | - | chr2_4:63309224-63309243 | Msa0341520:intron | 30.0% |
TATATTCGGAGAATTGCAAA+CGG | + | chr2_4:63309252-63309271 | None:intergenic | 30.0% | |
CAAAGTGGACACAAAAAATA+CGG | + | chr2_4:63309577-63309596 | None:intergenic | 30.0% | |
AGAAGGAAAAAAAATTGCAG+GGG | + | chr2_4:63309634-63309653 | None:intergenic | 30.0% | |
AATCAAGAAATCCCTAAAGA+AGG | + | chr2_4:63309651-63309670 | None:intergenic | 30.0% | |
AACAATCAAACTAGGAACTA+TGG | + | chr2_4:63309719-63309738 | None:intergenic | 30.0% | |
!! | AAGGCATTCGAAGATATTTT+AGG | + | chr2_4:63309835-63309854 | None:intergenic | 30.0% |
GTTCAAAAAGGATTAAGTAG+AGG | - | chr2_4:63309995-63310014 | Msa0341520:intron | 30.0% | |
GAATGCATACACAAAGAAAA+GGG | + | chr2_4:63310106-63310125 | None:intergenic | 30.0% | |
TGAATGCATACACAAAGAAA+AGG | + | chr2_4:63310107-63310126 | None:intergenic | 30.0% | |
TGTACATGTTAACTCTATCA+TGG | - | chr2_4:63310258-63310277 | Msa0341520:intron | 30.0% | |
! | AGACTTTTAAGCTTCCAAAA+AGG | - | chr2_4:63310367-63310386 | Msa0341520:intron | 30.0% |
! | AAGATAAGCTATGTTTTGCA+AGG | + | chr2_4:63310439-63310458 | None:intergenic | 30.0% |
AAAATATTAGTCATAGAGGC+GGG | + | chr2_4:63310465-63310484 | None:intergenic | 30.0% | |
CAAAATATTAGTCATAGAGG+CGG | + | chr2_4:63310466-63310485 | None:intergenic | 30.0% | |
! | GATAATCGGTTCTCTTATTA+TGG | - | chr2_4:63310565-63310584 | Msa0341520:intron | 30.0% |
TCATAGTGACATAGAAATTG+TGG | - | chr2_4:63310634-63310653 | Msa0341520:intron | 30.0% | |
AGAGTTGACAATAGATTTGT+AGG | - | chr2_4:63310958-63310977 | Msa0341520:intron | 30.0% | |
CACATGAAAAATCAAAAGCT+TGG | + | chr2_4:63311017-63311036 | None:intergenic | 30.0% | |
TAGAATCAGTCCATTATGAT+AGG | + | chr2_4:63311043-63311062 | None:intergenic | 30.0% | |
ATTTAATGCGGAGAAAAAAC+AGG | + | chr2_4:63311094-63311113 | None:intergenic | 30.0% | |
TTGTTTGTTTGGATTCTGAG+TGG | + | chr2_4:63306743-63306762 | None:intergenic | 35.0% | |
AAAAGAAGAGAGAGTGAGAA+GGG | - | chr2_4:63306771-63306790 | Msa0341520:three_prime_UTR | 35.0% | |
! | ATTTTCTGACCCTACATCTT+TGG | - | chr2_4:63306801-63306820 | Msa0341520:three_prime_UTR | 35.0% |
ATGATGAATGAACAACATGC+AGG | + | chr2_4:63306988-63307007 | None:intergenic | 35.0% | |
TTTGCTGCAGAAAGAGAATA+TGG | - | chr2_4:63307056-63307075 | Msa0341520:CDS | 35.0% | |
ATTGGAAAGGTTTCTGTTTC+CGG | + | chr2_4:63307130-63307149 | None:intergenic | 35.0% | |
ATTAAGGCAAACTCACATCA+GGG | + | chr2_4:63307194-63307213 | None:intergenic | 35.0% | |
AATTAAGGCAAACTCACATC+AGG | + | chr2_4:63307195-63307214 | None:intergenic | 35.0% | |
TTGTTTGGAAACTCAGTATC+TGG | - | chr2_4:63307245-63307264 | Msa0341520:CDS | 35.0% | |
TGGAATTTGATCACAATAGC+TGG | + | chr2_4:63307279-63307298 | None:intergenic | 35.0% | |
GTTGTATTCTCATGTCATGT+AGG | - | chr2_4:63307381-63307400 | Msa0341520:intron | 35.0% | |
GATCTTATCTTACAGTTTCC+TGG | + | chr2_4:63307728-63307747 | None:intergenic | 35.0% | |
ATAATCACTTGCAGTTGAGA+CGG | - | chr2_4:63307827-63307846 | Msa0341520:intron | 35.0% | |
TGGGGCACAATATAAATATG+AGG | - | chr2_4:63307860-63307879 | Msa0341520:intron | 35.0% | |
! | GTTACTTTGGATCATATTGG+TGG | - | chr2_4:63307979-63307998 | Msa0341520:intron | 35.0% |
TGCTCTTGTAATTCAATCGA+TGG | - | chr2_4:63308012-63308031 | Msa0341520:intron | 35.0% | |
ATTGTAGAGCTGAATATTCG+CGG | - | chr2_4:63308168-63308187 | Msa0341520:intron | 35.0% | |
GGGTGTCAAACTTTATTCTT+TGG | - | chr2_4:63308189-63308208 | Msa0341520:intron | 35.0% | |
TATTGCTGAAATTGCCATAG+TGG | - | chr2_4:63308214-63308233 | Msa0341520:intron | 35.0% | |
AAGAGAAGCCGAAAGAAAAA+TGG | + | chr2_4:63308406-63308425 | None:intergenic | 35.0% | |
! | GAAGAGCATATTTAACGCAA+AGG | + | chr2_4:63308489-63308508 | None:intergenic | 35.0% |
CTCTTAGCATTACAGCAATA+TGG | - | chr2_4:63308560-63308579 | Msa0341520:CDS | 35.0% | |
CTTAGCATTACAGCAATATG+GGG | - | chr2_4:63308562-63308581 | Msa0341520:CDS | 35.0% | |
!!! | GTTTTGTTGTTGATCAGGTT+AGG | - | chr2_4:63308666-63308685 | Msa0341520:intron | 35.0% |
! | TTACAATTGCTGCGTGTTTT+TGG | - | chr2_4:63308720-63308739 | Msa0341520:intron | 35.0% |
! | TACAATTGCTGCGTGTTTTT+GGG | - | chr2_4:63308721-63308740 | Msa0341520:intron | 35.0% |
! | TTTTTGTGCCGCAACTAAAA+GGG | - | chr2_4:63308792-63308811 | Msa0341520:intron | 35.0% |
TTCACATACTCTAAGTAGGA+AGG | + | chr2_4:63309324-63309343 | None:intergenic | 35.0% | |
AGGTTTCACATACTCTAAGT+AGG | + | chr2_4:63309328-63309347 | None:intergenic | 35.0% | |
TGCCATTACTTAGAATGTCT+TGG | - | chr2_4:63309431-63309450 | Msa0341520:intron | 35.0% | |
GCCATTACTTAGAATGTCTT+GGG | - | chr2_4:63309432-63309451 | Msa0341520:intron | 35.0% | |
CCATTACTTAGAATGTCTTG+GGG | - | chr2_4:63309433-63309452 | Msa0341520:intron | 35.0% | |
AGGTTATCAATGCTTCAAAG+TGG | + | chr2_4:63309592-63309611 | None:intergenic | 35.0% | |
AGTTCCTAGTTTGATTGTTG+CGG | - | chr2_4:63309720-63309739 | Msa0341520:intron | 35.0% | |
TTTGTAACTGAGCTACATTG+TGG | - | chr2_4:63309934-63309953 | Msa0341520:intron | 35.0% | |
ACTTTATATAACCACGTGCA+CGG | + | chr2_4:63310021-63310040 | None:intergenic | 35.0% | |
TCTGATCAGTAGACAAAGAA+GGG | + | chr2_4:63310165-63310184 | None:intergenic | 35.0% | |
ATCTGATCAGTAGACAAAGA+AGG | + | chr2_4:63310166-63310185 | None:intergenic | 35.0% | |
! | TTTTGCTACTAGTGAACTTG+AGG | + | chr2_4:63310228-63310247 | None:intergenic | 35.0% |
ACTAGTAGCAAAACCAAGAT+GGG | - | chr2_4:63310235-63310254 | Msa0341520:intron | 35.0% | |
TGGAAGCTTAAAAGTCTCTT+TGG | + | chr2_4:63310364-63310383 | None:intergenic | 35.0% | |
CTTCCAAAAAGGTCAGAAAT+GGG | - | chr2_4:63310378-63310397 | Msa0341520:intron | 35.0% | |
CTACTATCTGTCATTGTCAT+AGG | + | chr2_4:63310404-63310423 | None:intergenic | 35.0% | |
CTATGACAATGACAGATAGT+AGG | - | chr2_4:63310402-63310421 | Msa0341520:intron | 35.0% | |
! | CGCCTCTATGACTAATATTT+TGG | - | chr2_4:63310464-63310483 | Msa0341520:intron | 35.0% |
AGAACCGATTATCCAAGTAA+TGG | + | chr2_4:63310558-63310577 | None:intergenic | 35.0% | |
TAATATCCCAAGAAACACCT+TGG | + | chr2_4:63310660-63310679 | None:intergenic | 35.0% | |
! | AAGGTGTTTCTTGGGATATT+AGG | - | chr2_4:63310659-63310678 | Msa0341520:CDS | 35.0% |
! | CTTGGGATATTAGGATTTTC+AGG | - | chr2_4:63310668-63310687 | Msa0341520:CDS | 35.0% |
!! | GATATTAGGATTTTCAGGCA+TGG | - | chr2_4:63310673-63310692 | Msa0341520:CDS | 35.0% |
AAGCACAAGATATGCTATAC+CGG | + | chr2_4:63310711-63310730 | None:intergenic | 35.0% | |
TGTGCTTCGCAAAAATAAAG+AGG | - | chr2_4:63310724-63310743 | Msa0341520:CDS | 35.0% | |
GTGCTTCGCAAAAATAAAGA+GGG | - | chr2_4:63310725-63310744 | Msa0341520:CDS | 35.0% | |
!! | TTTGTCATTTGCTGACTTTC+AGG | + | chr2_4:63310776-63310795 | None:intergenic | 35.0% |
!!! | TTTTTTCAGTCAAGATCTGC+TGG | + | chr2_4:63310875-63310894 | None:intergenic | 35.0% |
! | ACTGTCTTTTGACATCACTT+AGG | - | chr2_4:63310983-63311002 | Msa0341520:intron | 35.0% |
TCATGTGATGCCTATCATAA+TGG | - | chr2_4:63311030-63311049 | Msa0341520:five_prime_UTR | 35.0% | |
TATTGGGAACATGTGTGAAA+AGG | - | chr2_4:63311067-63311086 | Msa0341520:five_prime_UTR | 35.0% | |
CAAAAGAAGAGAGAGTGAGA+AGG | - | chr2_4:63306770-63306789 | Msa0341520:three_prime_UTR | 40.0% | |
GATTGCGTACCAAAGATGTA+GGG | + | chr2_4:63306813-63306832 | None:intergenic | 40.0% | |
AGATTGCGTACCAAAGATGT+AGG | + | chr2_4:63306814-63306833 | None:intergenic | 40.0% | |
CCACAATTCATTTCAAGCAC+CGG | - | chr2_4:63307108-63307127 | Msa0341520:CDS | 40.0% | |
TATTTGTGGCGTCAATAAGC+GGG | + | chr2_4:63307155-63307174 | None:intergenic | 40.0% | |
GTATTTGTGGCGTCAATAAG+CGG | + | chr2_4:63307156-63307175 | None:intergenic | 40.0% | |
CAAATTCCACTGTCCACTAA+CGG | - | chr2_4:63307290-63307309 | Msa0341520:intron | 40.0% | |
AAATTCCACTGTCCACTAAC+GGG | - | chr2_4:63307291-63307310 | Msa0341520:intron | 40.0% | |
ATTTGCGACATTCCTTTGGA+GGG | + | chr2_4:63307355-63307374 | None:intergenic | 40.0% | |
TATTTGCGACATTCCTTTGG+AGG | + | chr2_4:63307356-63307375 | None:intergenic | 40.0% | |
TCATGTCATGTAGGAGTTTC+AGG | - | chr2_4:63307390-63307409 | Msa0341520:intron | 40.0% | |
CATGTCATGTAGGAGTTTCA+GGG | - | chr2_4:63307391-63307410 | Msa0341520:intron | 40.0% | |
! | AAATGAGTTGAGTCGAGGTT+TGG | - | chr2_4:63307415-63307434 | Msa0341520:intron | 40.0% |
ATCATAGCTCGTAGATAGCT+AGG | + | chr2_4:63307551-63307570 | None:intergenic | 40.0% | |
GCAATGGAAACAAGAAATCC+AGG | + | chr2_4:63307695-63307714 | None:intergenic | 40.0% | |
TCCATTGCATACATAGATCC+AGG | - | chr2_4:63307707-63307726 | Msa0341520:intron | 40.0% | |
TCCTGGATCTATGTATGCAA+TGG | + | chr2_4:63307711-63307730 | None:intergenic | 40.0% | |
TTGAGACGGATCTACAATCT+GGG | - | chr2_4:63307841-63307860 | Msa0341520:intron | 40.0% | |
TTGTAGAGCTGAATATTCGC+GGG | - | chr2_4:63308169-63308188 | Msa0341520:intron | 40.0% | |
TTCAACGTACCTGTTTGGAT+TGG | - | chr2_4:63308506-63308525 | Msa0341520:CDS | 40.0% | |
! | CTTTTTGTGCCGCAACTAAA+AGG | - | chr2_4:63308791-63308810 | Msa0341520:intron | 40.0% |
!! | AATTTCTCTCCTTGGTGCTA+TGG | - | chr2_4:63308835-63308854 | Msa0341520:CDS | 40.0% |
! | AACTGAACGTGGTATTTTCC+TGG | + | chr2_4:63308993-63309012 | None:intergenic | 40.0% |
AAAATACCACGTTCAGTTCG+CGG | - | chr2_4:63308995-63309014 | Msa0341520:CDS | 40.0% | |
!! | AGAAAGTGCCTTTGCTCTTA+TGG | - | chr2_4:63309184-63309203 | Msa0341520:intron | 40.0% |
AGAAGATCAAATGAGCTGTC+AGG | - | chr2_4:63309277-63309296 | Msa0341520:CDS | 40.0% | |
CCCCAAGACATTCTAAGTAA+TGG | + | chr2_4:63309436-63309455 | None:intergenic | 40.0% | |
CTTAGAATGTCTTGGGGAAA+TGG | - | chr2_4:63309439-63309458 | Msa0341520:intron | 40.0% | |
GGTCAAAGTTCTACGATAAC+AGG | - | chr2_4:63309498-63309517 | Msa0341520:intron | 40.0% | |
GTTAGCATATTCCGAATCCA+TGG | + | chr2_4:63309685-63309704 | None:intergenic | 40.0% | |
ATGACCGCAACAATCAAACT+AGG | + | chr2_4:63309727-63309746 | None:intergenic | 40.0% | |
AGTTTGATTGTTGCGGTCAT+TGG | - | chr2_4:63309727-63309746 | Msa0341520:intron | 40.0% | |
ACTACTCATAGCTGCACTAT+TGG | - | chr2_4:63309962-63309981 | Msa0341520:CDS | 40.0% | |
GGCTTCATCTGAGTTCAAAA+AGG | - | chr2_4:63309983-63310002 | Msa0341520:intron | 40.0% | |
CAAAGGGAAGCTCAAATGAT+AGG | + | chr2_4:63310192-63310211 | None:intergenic | 40.0% | |
ATTTGAGCTTCCCTTTGCTT+TGG | - | chr2_4:63310195-63310214 | Msa0341520:intron | 40.0% | |
CACTAGTAGCAAAACCAAGA+TGG | - | chr2_4:63310234-63310253 | Msa0341520:intron | 40.0% | |
GTTAACATGTACACCCATCT+TGG | + | chr2_4:63310251-63310270 | None:intergenic | 40.0% | |
GCTTCCAAAAAGGTCAGAAA+TGG | - | chr2_4:63310377-63310396 | Msa0341520:intron | 40.0% | |
TCCGCCATTACTTGGATAAT+CGG | - | chr2_4:63310551-63310570 | Msa0341520:intron | 40.0% | |
ACCGATTATCCAAGTAATGG+CGG | + | chr2_4:63310555-63310574 | None:intergenic | 40.0% | |
TGACATAGAAATTGTGGCCA+AGG | - | chr2_4:63310640-63310659 | Msa0341520:intron | 40.0% | |
TTCAGGCATGGCAGTATATT+TGG | - | chr2_4:63310685-63310704 | Msa0341520:CDS | 40.0% | |
!! | TAAAGAGGGTACACACCTTT+TGG | - | chr2_4:63310739-63310758 | Msa0341520:CDS | 40.0% |
CCCAGAATTAGAAGAACCTG+GGG | + | chr2_4:63307085-63307104 | None:intergenic | 45.0% | |
CCCCAGGTTCTTCTAATTCT+GGG | - | chr2_4:63307082-63307101 | Msa0341520:CDS | 45.0% | |
GCCCAGAATTAGAAGAACCT+GGG | + | chr2_4:63307086-63307105 | None:intergenic | 45.0% | |
TGCCCAGAATTAGAAGAACC+TGG | + | chr2_4:63307087-63307106 | None:intergenic | 45.0% | |
CCGGTGCTTGAAATGAATTG+TGG | + | chr2_4:63307111-63307130 | None:intergenic | 45.0% | |
ATTTGTGGCGTCAATAAGCG+GGG | + | chr2_4:63307154-63307173 | None:intergenic | 45.0% | |
GATCACAATAGCTGGTCGTT+GGG | + | chr2_4:63307271-63307290 | None:intergenic | 45.0% | |
TGATCACAATAGCTGGTCGT+TGG | + | chr2_4:63307272-63307291 | None:intergenic | 45.0% | |
AATTCCACTGTCCACTAACG+GGG | - | chr2_4:63307292-63307311 | Msa0341520:intron | 45.0% | |
AAAGCTGTGGACTCAGTTTG+GGG | + | chr2_4:63307318-63307337 | None:intergenic | 45.0% | |
CAAAGCTGTGGACTCAGTTT+GGG | + | chr2_4:63307319-63307338 | None:intergenic | 45.0% | |
ACAAAGCTGTGGACTCAGTT+TGG | + | chr2_4:63307320-63307339 | None:intergenic | 45.0% | |
! | ACTGAGTCCACAGCTTTGTA+TGG | - | chr2_4:63307321-63307340 | Msa0341520:intron | 45.0% |
! | AGTCCACAGCTTTGTATGGA+CGG | - | chr2_4:63307325-63307344 | Msa0341520:intron | 45.0% |
TTTCCGTCCATACAAAGCTG+TGG | + | chr2_4:63307331-63307350 | None:intergenic | 45.0% | |
! | TTTGCGACATTCCTTTGGAG+GGG | + | chr2_4:63307354-63307373 | None:intergenic | 45.0% |
! | AGGGTAAATGAGTTGAGTCG+AGG | - | chr2_4:63307410-63307429 | Msa0341520:intron | 45.0% |
! | CTATTTTGCAGAGGACAAGC+TGG | - | chr2_4:63307645-63307664 | Msa0341520:intron | 45.0% |
TTATTTGCATACATGGGGCC+TGG | - | chr2_4:63307674-63307693 | Msa0341520:intron | 45.0% | |
GTTGAGACGGATCTACAATC+TGG | - | chr2_4:63307840-63307859 | Msa0341520:intron | 45.0% | |
TGAGACGGATCTACAATCTG+GGG | - | chr2_4:63307842-63307861 | Msa0341520:intron | 45.0% | |
ACCAGTAACCACTCCAAGAT+TGG | + | chr2_4:63308041-63308060 | None:intergenic | 45.0% | |
! | CAGTTCTATATGCTGCTTGC+AGG | - | chr2_4:63308128-63308147 | Msa0341520:CDS | 45.0% |
!! | AATACCTTCTGGGATGTCAC+AGG | + | chr2_4:63308240-63308259 | None:intergenic | 45.0% |
TGCTCTTCAACGTACCTGTT+TGG | - | chr2_4:63308501-63308520 | Msa0341520:intron | 45.0% | |
AGTAGCACACCAATCCAAAC+AGG | + | chr2_4:63308518-63308537 | None:intergenic | 45.0% | |
GGTCTTGCAATTTCTCTCCT+TGG | - | chr2_4:63308827-63308846 | Msa0341520:CDS | 45.0% | |
AAGTGCCTTTGCTCTTATGG+TGG | - | chr2_4:63309187-63309206 | Msa0341520:intron | 45.0% | |
GAAAGCCACCATAAGAGCAA+AGG | + | chr2_4:63309195-63309214 | None:intergenic | 45.0% | |
GGAATTGCTTTGCTTGCATC+AGG | - | chr2_4:63309477-63309496 | Msa0341520:intron | 45.0% | |
ACGATAACAGGAACCTATGC+AGG | - | chr2_4:63309510-63309529 | Msa0341520:intron | 45.0% | |
CGATAACAGGAACCTATGCA+GGG | - | chr2_4:63309511-63309530 | Msa0341520:intron | 45.0% | |
TTGATTTACGACTGACGCCA+TGG | - | chr2_4:63309665-63309684 | Msa0341520:CDS | 45.0% | |
TTGATTGTTGCGGTCATTGG+TGG | - | chr2_4:63309730-63309749 | Msa0341520:intron | 45.0% | |
AGGAGTGGTACCAAAGCAAA+GGG | + | chr2_4:63310208-63310227 | None:intergenic | 45.0% | |
CTACTAGTGAACTTGAGGAG+TGG | + | chr2_4:63310223-63310242 | None:intergenic | 45.0% | |
! | AGGCCCATTTCTGACCTTTT+TGG | + | chr2_4:63310384-63310403 | None:intergenic | 45.0% |
GACAGATAGTAGGTCAGACT+CGG | - | chr2_4:63310412-63310431 | Msa0341520:intron | 45.0% | |
ACAGATAGTAGGTCAGACTC+GGG | - | chr2_4:63310413-63310432 | Msa0341520:intron | 45.0% | |
TGCAGATATCCGCCATTACT+TGG | - | chr2_4:63310543-63310562 | Msa0341520:intron | 45.0% | |
! | ATTGTGGCCAAGGTGTTTCT+TGG | - | chr2_4:63310650-63310669 | Msa0341520:CDS | 45.0% |
! | TTGTGGCCAAGGTGTTTCTT+GGG | - | chr2_4:63310651-63310670 | Msa0341520:CDS | 45.0% |
!! | CAAAAATAAAAAAAAAATAA+GGG | + | chr2_4:63307228-63307247 | None:intergenic | 5.0% |
!! | ACAAAAATAAAAAAAAAATA+AGG | + | chr2_4:63307229-63307248 | None:intergenic | 5.0% |
!!! | ATTTTTTTTTTATTTTTGTT+TGG | - | chr2_4:63307230-63307249 | Msa0341520:CDS | 5.0% |
AAAGAGAATATGGCTGCCCC+AGG | - | chr2_4:63307066-63307085 | Msa0341520:CDS | 50.0% | |
GCCCCAGGTTCTTCTAATTC+TGG | - | chr2_4:63307081-63307100 | Msa0341520:CDS | 50.0% | |
!! | CAATAAGCGGGGCATTGGAA+AGG | + | chr2_4:63307143-63307162 | None:intergenic | 50.0% |
GAAGGCTTGAGCTTGAGCAT+AGG | + | chr2_4:63307936-63307955 | None:intergenic | 50.0% | |
CAATCGATGGCTGCCAATCT+TGG | - | chr2_4:63308025-63308044 | Msa0341520:intron | 50.0% | |
GCCAATCTTGGAGTGGTTAC+TGG | - | chr2_4:63308037-63308056 | Msa0341520:intron | 50.0% | |
!! | TGGATTGGTGTGCTACTGAC+CGG | - | chr2_4:63308521-63308540 | Msa0341520:CDS | 50.0% |
GAGCATCAATGTGCTGAGTC+CGG | + | chr2_4:63308543-63308562 | None:intergenic | 50.0% | |
!! | GCACCACTCCCTTTTAGTTG+CGG | + | chr2_4:63308803-63308822 | None:intergenic | 50.0% |
!! | CTAAAAGGGAGTGGTGCTAC+TGG | - | chr2_4:63308806-63308825 | Msa0341520:intron | 50.0% |
ACGGCATAACCATAGCACCA+AGG | + | chr2_4:63308847-63308866 | None:intergenic | 50.0% | |
CCACAATCTCTTCCTGCACT+CGG | - | chr2_4:63308955-63308974 | Msa0341520:intron | 50.0% | |
! | AAAGTACCAATGCCGAGTGC+AGG | + | chr2_4:63308970-63308989 | None:intergenic | 50.0% |
!! | ACTCGGCATTGGTACTTTCC+AGG | - | chr2_4:63308972-63308991 | Msa0341520:intron | 50.0% |
TTGATTCCGCGAACTGAACG+TGG | + | chr2_4:63309004-63309023 | None:intergenic | 50.0% | |
ACGTTCAGTTCGCGGAATCA+AGG | - | chr2_4:63309003-63309022 | Msa0341520:CDS | 50.0% | |
CATGACATACTGCCCTGCAT+AGG | + | chr2_4:63309526-63309545 | None:intergenic | 50.0% | |
TACGACTGACGCCATGGATT+CGG | - | chr2_4:63309671-63309690 | Msa0341520:CDS | 50.0% | |
GAGGAGTGGTACCAAAGCAA+AGG | + | chr2_4:63310209-63310228 | None:intergenic | 50.0% | |
GGCATGGCAGTATATTTGGC+CGG | - | chr2_4:63310689-63310708 | Msa0341520:CDS | 50.0% | |
!! | CAGGTGCTGTTAGAGCCAAA+AGG | + | chr2_4:63310757-63310776 | None:intergenic | 50.0% |
TCTGCTGGACTACTTCTCTG+AGG | + | chr2_4:63310860-63310879 | None:intergenic | 50.0% | |
ATGGACGGAAACCCCTCCAA+AGG | - | chr2_4:63307340-63307359 | Msa0341520:intron | 55.0% | |
GATGGCTGCCAATCTTGGAG+TGG | - | chr2_4:63308030-63308049 | Msa0341520:intron | 55.0% | |
TGGGATGTCACAGGCCACTA+TGG | + | chr2_4:63308231-63308250 | None:intergenic | 55.0% | |
!!! | GCGTGTTTTTGGGCTGAGCT+TGG | - | chr2_4:63308731-63308750 | Msa0341520:intron | 55.0% |
GTGCCGCAACTAAAAGGGAG+TGG | - | chr2_4:63308797-63308816 | Msa0341520:intron | 55.0% | |
GCAGGAAGAGATTGTGGCTG+AGG | + | chr2_4:63308952-63308971 | None:intergenic | 55.0% | |
CCGAGTGCAGGAAGAGATTG+TGG | + | chr2_4:63308958-63308977 | None:intergenic | 55.0% | |
TCTCTTCCTGCACTCGGCAT+TGG | - | chr2_4:63308961-63308980 | Msa0341520:intron | 55.0% | |
TGCAGGGCAGTATGTCATGC+AGG | - | chr2_4:63309527-63309546 | Msa0341520:intron | 55.0% | |
TTAAGTAGAGGCCGTGCACG+TGG | - | chr2_4:63310007-63310026 | Msa0341520:intron | 55.0% | |
GGCGTCAATAAGCGGGGCAT+TGG | + | chr2_4:63307148-63307167 | None:intergenic | 60.0% | |
! | TCAGTTTGGGGCCCCGTTAG+TGG | + | chr2_4:63307306-63307325 | None:intergenic | 60.0% |
GTGGCCTGTGACATCCCAGA+AGG | - | chr2_4:63308233-63308252 | Msa0341520:intron | 60.0% | |
! | CGGTCATTGGTGGCTCTGCT+GGG | - | chr2_4:63309740-63309759 | Msa0341520:intron | 60.0% |
! | GGTCATTGGTGGCTCTGCTG+GGG | - | chr2_4:63309741-63309760 | Msa0341520:intron | 60.0% |
! | GCGGTCATTGGTGGCTCTGC+TGG | - | chr2_4:63309739-63309758 | Msa0341520:intron | 65.0% |
! | ATTGGTGGCTCTGCTGGGGC+TGG | - | chr2_4:63309745-63309764 | Msa0341520:intron | 65.0% |
! | TTGGTGGCTCTGCTGGGGCT+GGG | - | chr2_4:63309746-63309765 | Msa0341520:intron | 65.0% |
! | GGGGCCCCGTTAGTGGACAG+TGG | + | chr2_4:63307299-63307318 | None:intergenic | 70.0% |
! | TGGTGGCTCTGCTGGGGCTG+GGG | - | chr2_4:63309747-63309766 | Msa0341520:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 63306717 | 63311123 | 63306717 | ID=Msa0341520;Name=Msa0341520 |
chr2_4 | mRNA | 63306717 | 63311123 | 63306717 | ID=Msa0341520-mRNA-1;Parent=Msa0341520;Name=Msa0341520-mRNA-1;_AED=0.17;_eAED=0.17;_QI=115|1|1|1|0.92|0.85|14|234|545 |
chr2_4 | exon | 63306717 | 63307292 | 63306717 | ID=Msa0341520-mRNA-1:exon:20232;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63307561 | 63307656 | 63307561 | ID=Msa0341520-mRNA-1:exon:20231;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63308051 | 63308182 | 63308051 | ID=Msa0341520-mRNA-1:exon:20230;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63308292 | 63308396 | 63308292 | ID=Msa0341520-mRNA-1:exon:20229;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63308506 | 63308679 | 63308506 | ID=Msa0341520-mRNA-1:exon:20228;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63308816 | 63308885 | 63308816 | ID=Msa0341520-mRNA-1:exon:20227;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63308976 | 63309157 | 63308976 | ID=Msa0341520-mRNA-1:exon:20226;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63309257 | 63309366 | 63309257 | ID=Msa0341520-mRNA-1:exon:20225;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63309586 | 63309690 | 63309586 | ID=Msa0341520-mRNA-1:exon:20224;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63309782 | 63309860 | 63309782 | ID=Msa0341520-mRNA-1:exon:20223;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63309959 | 63309999 | 63309959 | ID=Msa0341520-mRNA-1:exon:20222;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63310106 | 63310184 | 63310106 | ID=Msa0341520-mRNA-1:exon:20221;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63310643 | 63310774 | 63310643 | ID=Msa0341520-mRNA-1:exon:20220;Parent=Msa0341520-mRNA-1 |
chr2_4 | exon | 63311018 | 63311123 | 63311018 | ID=Msa0341520-mRNA-1:exon:20219;Parent=Msa0341520-mRNA-1 |
chr2_4 | five_prime_UTR | 63311018 | 63311123 | 63311018 | ID=Msa0341520-mRNA-1:five_prime_utr;Parent=Msa0341520-mRNA-1 |
chr2_4 | five_prime_UTR | 63310766 | 63310774 | 63310766 | ID=Msa0341520-mRNA-1:five_prime_utr;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63310643 | 63310765 | 63310643 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63310106 | 63310184 | 63310106 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63309959 | 63309999 | 63309959 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63309782 | 63309860 | 63309782 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63309586 | 63309690 | 63309586 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63309257 | 63309366 | 63309257 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63308976 | 63309157 | 63308976 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63308816 | 63308885 | 63308816 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63308506 | 63308679 | 63308506 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63308292 | 63308396 | 63308292 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63308051 | 63308182 | 63308051 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63307561 | 63307656 | 63307561 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | CDS | 63306951 | 63307292 | 63306951 | ID=Msa0341520-mRNA-1:cds;Parent=Msa0341520-mRNA-1 |
chr2_4 | three_prime_UTR | 63306717 | 63306950 | 63306717 | ID=Msa0341520-mRNA-1:three_prime_utr;Parent=Msa0341520-mRNA-1 |
Gene Sequence |
Protein sequence |