Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016440 | XP_013470073.1 | 99.497 | 596 | 3 | 0 | 6 | 601 | 2 | 597 | 0.0 | 1189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016440 | sp|O49485|SERA1_ARATH | 83.219 | 584 | 94 | 2 | 22 | 601 | 20 | 603 | 0.0 | 980 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016440 | A0A072VR00 | 99.497 | 596 | 3 | 0 | 6 | 601 | 2 | 597 | 0.0 | 1189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016440 | Msa0043150 | 0.827881 | 1.224283e-54 | -8.615850e-47 |
| Msa0016440 | Msa0048950 | 0.804586 | 2.011545e-49 | -8.615850e-47 |
| Msa0016440 | Msa0051100 | -0.808684 | 2.744127e-50 | -8.615850e-47 |
| Msa0016440 | Msa0054760 | -0.803420 | 3.515746e-49 | -8.615850e-47 |
| Msa0016440 | Msa0089540 | 0.857806 | 1.269838e-62 | -8.615850e-47 |
| Msa0016440 | Msa0101650 | -0.818986 | 1.471670e-52 | -8.615850e-47 |
| Msa0016440 | Msa0104740 | 0.829913 | 3.945733e-55 | -8.615850e-47 |
| Msa0016440 | Msa0121460 | -0.815540 | 8.774042e-52 | -8.615850e-47 |
| Msa0016440 | Msa0132890 | 0.853908 | 1.750531e-61 | -8.615850e-47 |
| Msa0016440 | Msa0175480 | -0.802425 | 5.644235e-49 | -8.615850e-47 |
| Msa0016440 | Msa0188740 | 0.833205 | 6.095659e-56 | -8.615850e-47 |
| Msa0016440 | Msa0216550 | -0.801332 | 9.464745e-49 | -8.615850e-47 |
| Msa0016440 | Msa0218590 | -0.801008 | 1.102768e-48 | -8.615850e-47 |
| Msa0016440 | Msa0222720 | -0.834272 | 3.299073e-56 | -8.615850e-47 |
| Msa0016440 | Msa0225370 | -0.800322 | 1.521780e-48 | -8.615850e-47 |
| Msa0016440 | Msa0228690 | 0.832220 | 1.070087e-55 | -8.615850e-47 |
| Msa0016440 | Msa0237180 | 0.808784 | 2.612210e-50 | -8.615850e-47 |
| Msa0016440 | Msa0256410 | -0.827388 | 1.607931e-54 | -8.615850e-47 |
| Msa0016440 | Msa0264020 | -0.835778 | 1.376262e-56 | -8.615850e-47 |
| Msa0016440 | Msa0264240 | -0.821237 | 4.491479e-53 | -8.615850e-47 |
| Msa0016440 | Msa0264420 | -0.803738 | 3.021271e-49 | -8.615850e-47 |
| Msa0016440 | Msa0266380 | -0.835218 | 1.907490e-56 | -8.615850e-47 |
| Msa0016440 | Msa0270160 | 0.803081 | 4.131935e-49 | -8.615850e-47 |
| Msa0016440 | Msa0274940 | 0.803832 | 2.887851e-49 | -8.615850e-47 |
| Msa0016440 | Msa0295850 | -0.813630 | 2.322002e-51 | -8.615850e-47 |
| Msa0016440 | Msa0305580 | -0.809202 | 2.125693e-50 | -8.615850e-47 |
| Msa0016440 | Msa0315660 | 0.807691 | 4.466659e-50 | -8.615850e-47 |
| Msa0016440 | Msa0339560 | -0.839978 | 1.146781e-57 | -8.615850e-47 |
| Msa0016440 | Msa0341860 | -0.835723 | 1.420976e-56 | -8.615850e-47 |
| Msa0016440 | Msa0370350 | -0.800302 | 1.536272e-48 | -8.615850e-47 |
| Msa0016440 | Msa0380590 | 0.810353 | 1.202095e-50 | -8.615850e-47 |
| Msa0016440 | Msa0387290 | 0.854680 | 1.047476e-61 | -8.615850e-47 |
| Msa0016440 | Msa0388520 | 0.806117 | 9.613358e-50 | -8.615850e-47 |
| Msa0016440 | Msa0436830 | -0.811258 | 7.660821e-51 | -8.615850e-47 |
| Msa0016440 | Msa0469430 | 0.805059 | 1.602758e-49 | -8.615850e-47 |
| Msa0016440 | Msa0476730 | -0.800406 | 1.462794e-48 | -8.615850e-47 |
| Msa0016440 | Msa0477670 | 0.829147 | 6.056297e-55 | -8.615850e-47 |
| Msa0016440 | Msa0482760 | 0.850688 | 1.444802e-60 | -8.615850e-47 |
| Msa0016440 | Msa0500420 | 0.811564 | 6.573790e-51 | -8.615850e-47 |
| Msa0016440 | Msa0515110 | 0.810726 | 9.986260e-51 | -8.615850e-47 |
| Msa0016440 | Msa0521100 | -0.814583 | 1.431106e-51 | -8.615850e-47 |
| Msa0016440 | Msa0540160 | -0.834434 | 3.003626e-56 | -8.615850e-47 |
| Msa0016440 | Msa0621190 | 0.819774 | 9.732784e-53 | -8.615850e-47 |
| Msa0016440 | Msa0623040 | 0.829263 | 5.678033e-55 | -8.615850e-47 |
| Msa0016440 | Msa0623310 | 0.804107 | 2.532023e-49 | -8.615850e-47 |
| Msa0016440 | Msa0623360 | -0.807653 | 4.549779e-50 | -8.615850e-47 |
| Msa0016440 | Msa0697600 | -0.812775 | 3.578040e-51 | -8.615850e-47 |
| Msa0016440 | Msa0705050 | -0.814264 | 1.683177e-51 | -8.615850e-47 |
| Msa0016440 | Msa0709380 | 0.829155 | 6.029917e-55 | -8.615850e-47 |
| Msa0016440 | Msa0733670 | 0.830298 | 3.177021e-55 | -8.615850e-47 |
| Msa0016440 | Msa0746090 | 0.806196 | 9.251702e-50 | -8.615850e-47 |
| Msa0016440 | Msa0748050 | -0.808881 | 2.491184e-50 | -8.615850e-47 |
| Msa0016440 | Msa0761830 | 0.804021 | 2.638457e-49 | -8.615850e-47 |
| Msa0016440 | Msa0774810 | 0.822444 | 2.360859e-53 | -8.615850e-47 |
| Msa0016440 | Msa0797010 | -0.802845 | 4.624761e-49 | -8.615850e-47 |
| Msa0016440 | Msa0812330 | 0.860238 | 2.374155e-63 | -8.615850e-47 |
| Msa0016440 | Msa0834240 | -0.802292 | 6.013136e-49 | -8.615850e-47 |
| Msa0016440 | Msa0850520 | -0.800827 | 1.200612e-48 | -8.615850e-47 |
| Msa0016440 | Msa0852620 | 0.846316 | 2.344814e-59 | -8.615850e-47 |
| Msa0016440 | Msa0880050 | 0.803838 | 2.879166e-49 | -8.615850e-47 |
| Msa0016440 | Msa0883670 | -0.810630 | 1.047521e-50 | -8.615850e-47 |
| Msa0016440 | Msa0930360 | 0.822760 | 1.993212e-53 | -8.615850e-47 |
| Msa0016440 | Msa0934940 | 0.807833 | 4.166178e-50 | -8.615850e-47 |
| Msa0016440 | Msa0984860 | -0.802952 | 4.393894e-49 | -8.615850e-47 |
| Msa0016440 | Msa1026710 | 0.915173 | 8.059490e-85 | -8.615850e-47 |
| Msa0016440 | Msa1026730 | 0.879239 | 1.465039e-69 | -8.615850e-47 |
| Msa0016440 | Msa1037030 | 0.809837 | 1.553096e-50 | -8.615850e-47 |
| Msa0016440 | Msa1041550 | -0.812525 | 4.058325e-51 | -8.615850e-47 |
| Msa0016440 | Msa1041830 | 0.821185 | 4.618713e-53 | -8.615850e-47 |
| Msa0016440 | Msa1081530 | -0.832317 | 1.012852e-55 | -8.615850e-47 |
| Msa0016440 | Msa1102180 | -0.801619 | 8.267540e-49 | -8.615850e-47 |
| Msa0016440 | Msa1124980 | 0.814744 | 1.318176e-51 | -8.615850e-47 |
| Msa0016440 | Msa1125450 | -0.806847 | 6.742082e-50 | -8.615850e-47 |
| Msa0016440 | Msa1130770 | 0.814586 | 1.428466e-51 | -8.615850e-47 |
| Msa0016440 | Msa1147070 | 0.817574 | 3.073371e-52 | -8.615850e-47 |
| Msa0016440 | Msa1164520 | 0.804910 | 1.721645e-49 | -8.615850e-47 |
| Msa0016440 | Msa1164570 | -0.800152 | 1.648021e-48 | -8.615850e-47 |
| Msa0016440 | Msa1167360 | 0.802809 | 4.702967e-49 | -8.615850e-47 |
| Msa0016440 | Msa1190560 | 0.802187 | 6.318532e-49 | -8.615850e-47 |
| Msa0016440 | Msa1201370 | 0.839422 | 1.600189e-57 | -8.615850e-47 |
| Msa0016440 | Msa1216370 | 0.811006 | 8.688306e-51 | -8.615850e-47 |
| Msa0016440 | Msa1240060 | 0.823336 | 1.463271e-53 | -8.615850e-47 |
| Msa0016440 | Msa1263000 | 0.836055 | 1.170706e-56 | -8.615850e-47 |
| Msa0016440 | Msa1263610 | -0.806139 | 9.507994e-50 | -8.615850e-47 |
| Msa0016440 | Msa1276070 | -0.815473 | 9.079395e-52 | -8.615850e-47 |
| Msa0016440 | Msa1281370 | 0.829332 | 5.461172e-55 | -8.615850e-47 |
| Msa0016440 | Msa1320530 | 0.826191 | 3.105882e-54 | -8.615850e-47 |
| Msa0016440 | Msa1328600 | -0.806320 | 8.709913e-50 | -8.615850e-47 |
| Msa0016440 | Msa1347610 | 0.935271 | 1.101628e-96 | -8.615850e-47 |
| Msa0016440 | Msa1357720 | -0.839353 | 1.667389e-57 | -8.615850e-47 |
| Msa0016440 | Msa1360380 | -0.805788 | 1.126983e-49 | -8.615850e-47 |
| Msa0016440 | Msa1398460 | 0.802662 | 5.044138e-49 | -8.615850e-47 |
| Msa0016440 | Msa1403520 | 0.851853 | 6.772134e-61 | -8.615850e-47 |
| Msa0016440 | Msa1427180 | -0.802260 | 6.103555e-49 | -8.615850e-47 |
| Msa0016440 | Msa1447900 | 0.803025 | 4.244296e-49 | -8.615850e-47 |
| Msa0016440 | Msa1451660 | 0.831308 | 1.796491e-55 | -8.615850e-47 |
| Msa0016440 | Msa1460970 | 0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0016440 | Msa1463510 | 0.854865 | 9.256984e-62 | -8.615850e-47 |
| Msa0016440 | Msa1465890 | 0.835782 | 1.373267e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016440 | MtrunA17_Chr1g0208141 | 99.497 | 596 | 3 | 0 | 6 | 601 | 2 | 597 | 0.0 | 1189 |
| Msa0016440 | MtrunA17_Chr4g0000511 | 78.532 | 545 | 117 | 0 | 57 | 601 | 86 | 630 | 0.0 | 898 |
| Msa0016440 | MtrunA17_Chr3g0077771 | 31.621 | 253 | 155 | 5 | 122 | 358 | 117 | 367 | 3.52e-29 | 119 |
| Msa0016440 | MtrunA17_Chr4g0004721 | 28.235 | 255 | 174 | 4 | 122 | 375 | 68 | 314 | 1.39e-28 | 116 |
| Msa0016440 | MtrunA17_Chr4g0004711 | 28.794 | 257 | 168 | 5 | 123 | 375 | 68 | 313 | 3.17e-28 | 115 |
| Msa0016440 | MtrunA17_Chr1g0210971 | 33.910 | 289 | 161 | 8 | 100 | 363 | 63 | 346 | 1.18e-27 | 115 |
| Msa0016440 | MtrunA17_Chr4g0004681 | 26.378 | 254 | 177 | 4 | 122 | 375 | 67 | 310 | 5.07e-26 | 108 |
| Msa0016440 | MtrunA17_Chr6g0450811 | 30.924 | 249 | 162 | 4 | 123 | 364 | 122 | 367 | 1.22e-23 | 103 |
| Msa0016440 | MtrunA17_Chr4g0004741 | 29.297 | 256 | 170 | 6 | 122 | 375 | 67 | 313 | 3.11e-21 | 94.7 |
| Msa0016440 | MtrunA17_Chr8g0351111 | 28.788 | 264 | 171 | 5 | 123 | 382 | 76 | 326 | 6.47e-21 | 94.4 |
| Msa0016440 | MtrunA17_Chr2g0331641 | 28.462 | 260 | 168 | 7 | 122 | 375 | 67 | 314 | 1.16e-19 | 90.1 |
| Msa0016440 | MtrunA17_Chr6g0450821 | 28.629 | 248 | 150 | 5 | 123 | 364 | 92 | 318 | 2.77e-18 | 86.7 |
| Msa0016440 | MtrunA17_Chr8g0351141 | 25.197 | 254 | 177 | 5 | 123 | 370 | 79 | 325 | 2.91e-17 | 83.2 |
| Msa0016440 | MtrunA17_Chr8g0351121 | 26.482 | 253 | 173 | 6 | 102 | 349 | 93 | 337 | 5.62e-17 | 82.8 |
| Msa0016440 | MtrunA17_Chr7g0246361 | 29.464 | 224 | 139 | 8 | 123 | 344 | 57 | 263 | 2.64e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016440 | AT4G34200.1 | 83.219 | 584 | 94 | 2 | 22 | 601 | 20 | 603 | 0.0 | 980 |
| Msa0016440 | AT3G19480.1 | 82.155 | 566 | 99 | 1 | 38 | 601 | 23 | 588 | 0.0 | 942 |
| Msa0016440 | AT1G17745.1 | 78.269 | 543 | 118 | 0 | 59 | 601 | 82 | 624 | 0.0 | 885 |
| Msa0016440 | AT1G17745.2 | 74.211 | 570 | 120 | 2 | 59 | 601 | 82 | 651 | 0.0 | 864 |
| Msa0016440 | AT1G72190.1 | 29.181 | 281 | 183 | 5 | 79 | 350 | 77 | 350 | 1.21e-27 | 115 |
| Msa0016440 | AT5G14780.2 | 31.667 | 240 | 160 | 3 | 129 | 364 | 112 | 351 | 5.35e-27 | 113 |
| Msa0016440 | AT5G14780.3 | 31.667 | 240 | 160 | 3 | 129 | 364 | 100 | 339 | 7.74e-27 | 112 |
| Msa0016440 | AT1G79870.1 | 28.627 | 255 | 171 | 6 | 123 | 375 | 68 | 313 | 1.13e-26 | 111 |
| Msa0016440 | AT5G14780.1 | 31.667 | 240 | 160 | 3 | 129 | 364 | 126 | 365 | 1.22e-26 | 112 |
| Msa0016440 | AT1G68010.1 | 32.753 | 287 | 167 | 7 | 100 | 363 | 63 | 346 | 4.83e-25 | 107 |
| Msa0016440 | AT1G68010.2 | 32.986 | 288 | 166 | 8 | 100 | 363 | 63 | 347 | 1.31e-23 | 103 |
| Msa0016440 | AT1G12550.1 | 28.631 | 241 | 165 | 4 | 123 | 361 | 75 | 310 | 1.44e-23 | 102 |
| Msa0016440 | AT1G68010.3 | 32.482 | 274 | 159 | 7 | 100 | 350 | 63 | 333 | 1.62e-23 | 102 |
| Msa0016440 | AT2G45630.2 | 28.125 | 256 | 173 | 6 | 123 | 375 | 91 | 338 | 3.25e-22 | 98.6 |
| Msa0016440 | AT1G79870.2 | 27.559 | 254 | 156 | 6 | 123 | 375 | 68 | 294 | 2.49e-21 | 95.1 |
Find 201 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCATTGAGCATCTTAT+TGG | 0.186509 | 1_1:+27229890 | None:intergenic |
| GGCGGAGGAGAGAGGGAGTT+TGG | 0.212385 | 1_1:+27231155 | None:intergenic |
| CAACTCATCAAGTGAAGTTT+TGG | 0.231840 | 1_1:+27231328 | None:intergenic |
| CTTGTTAGAGCATTGGATTC+TGG | 0.237598 | 1_1:-27229795 | Msa0016440:CDS |
| GTGAAGGGAGACGGAGGGTT+TGG | 0.252825 | 1_1:+27231199 | None:intergenic |
| ACACTTGCTGTAATGGGATT+TGG | 0.255805 | 1_1:-27230089 | Msa0016440:CDS |
| GCTAGTGCCATATCAGATTC+AGG | 0.283199 | 1_1:-27228587 | Msa0016440:CDS |
| CATAACCAACTTGCTGTCTT+TGG | 0.290705 | 1_1:+27229643 | None:intergenic |
| ACATTTAATCTTACAACTTA+AGG | 0.291198 | 1_1:+27228264 | None:intergenic |
| GTTCACGAAAACACTGGATA+TGG | 0.294301 | 1_1:+27228742 | None:intergenic |
| TGGAATGAATTGTGATTTAC+TGG | 0.300026 | 1_1:-27228106 | Msa0016440:three_prime_UTR |
| ACAAGTGTGTAGGTGAGTTT+AGG | 0.301324 | 1_1:-27228156 | Msa0016440:three_prime_UTR |
| TGTTGATCTTGCTGAGAAAC+TGG | 0.306465 | 1_1:-27228900 | Msa0016440:CDS |
| AGCGTTAGCGGCGGCGGCGG+CGG | 0.331648 | 1_1:+27231227 | None:intergenic |
| TGAAGGGAGACGGAGGGTTT+GGG | 0.332772 | 1_1:+27231200 | None:intergenic |
| AAGGTAGCATTATACTTTGC+AGG | 0.338794 | 1_1:-27228481 | Msa0016440:CDS |
| CGTGAAGTGTTTGAATCTTC+CGG | 0.339399 | 1_1:-27230898 | Msa0016440:CDS |
| CACTTGCTGTAATGGGATTT+GGG | 0.344965 | 1_1:-27230088 | Msa0016440:CDS |
| GGAGTTTGGAGGAGAGAGAA+AGG | 0.350829 | 1_1:+27231169 | None:intergenic |
| GCTGATCGTGCTCATGCTAT+TGG | 0.358730 | 1_1:-27229990 | Msa0016440:CDS |
| CAAGTGTGTAGGTGAGTTTA+GGG | 0.367532 | 1_1:-27228155 | Msa0016440:three_prime_UTR |
| GAGGAGAGAGTTATTCTTGA+TGG | 0.369656 | 1_1:-27228671 | Msa0016440:CDS |
| TCTAACTCCTTTCTTCATCT+TGG | 0.371423 | 1_1:+27229860 | None:intergenic |
| GGGAAGACACTTGCTGTAAT+GGG | 0.381131 | 1_1:-27230095 | Msa0016440:CDS |
| TTTGGATTGGGGCATATGTC+TGG | 0.384051 | 1_1:-27228212 | Msa0016440:three_prime_UTR |
| ACATGGTTAATACAGGGAAA+TGG | 0.384206 | 1_1:-27230151 | Msa0016440:intron |
| GACCTCCCCTGAATCTGATA+TGG | 0.384239 | 1_1:+27228580 | None:intergenic |
| GAAGACGACGAGGGAACGGC+GGG | 0.395159 | 1_1:+27231104 | None:intergenic |
| AGCATCACAGAGAGAGATCT+TGG | 0.396721 | 1_1:+27230951 | None:intergenic |
| AGTAGCGTTAGCGGCGGCGG+CGG | 0.399359 | 1_1:+27231224 | None:intergenic |
| GAGATTCCACGTTAGCAATC+TGG | 0.405437 | 1_1:+27228615 | None:intergenic |
| AGACGAGTGTCAAGATCATC+AGG | 0.412057 | 1_1:+27228800 | None:intergenic |
| CCCACCTTTCCAATCATACC+TGG | 0.415387 | 1_1:+27228446 | None:intergenic |
| GCGGAGGGAGACGGAGAAGG+CGG | 0.416963 | 1_1:+27231137 | None:intergenic |
| CAATGATGATACATCAAAAC+CGG | 0.418034 | 1_1:+27228180 | None:intergenic |
| ATCTTGGTGCAAAGCTCCTC+AGG | 0.418039 | 1_1:+27230967 | None:intergenic |
| CCACGTTAGCAATCTGGACT+TGG | 0.423183 | 1_1:+27228621 | None:intergenic |
| TGGGAAGACACTTGCTGTAA+TGG | 0.425768 | 1_1:-27230096 | Msa0016440:CDS |
| GAGGGAGACGGAGAAGGCGG+AGG | 0.427254 | 1_1:+27231140 | None:intergenic |
| GGAAAGGTGGGAAGCATCTT+GGG | 0.427465 | 1_1:-27228434 | Msa0016440:CDS |
| TATGTTGGAGTTTCCCTAGT+TGG | 0.429161 | 1_1:-27230116 | Msa0016440:CDS |
| GTAGATCAACCAGGTATGAT+TGG | 0.432608 | 1_1:-27228455 | Msa0016440:CDS |
| CAGCAAGTGTCTTCCCAACT+AGG | 0.432947 | 1_1:+27230102 | None:intergenic |
| GGGAAGATGGTGAAGGGAGA+CGG | 0.433199 | 1_1:+27231190 | None:intergenic |
| AAATAGCAGAAGCTGTCGTT+GGG | 0.435352 | 1_1:-27229457 | Msa0016440:CDS |
| CACGGGATCGCGCTCTTAGC+TGG | 0.436535 | 1_1:-27230751 | Msa0016440:CDS |
| CTCAAGGTTGTTGGTAGAGC+TGG | 0.437574 | 1_1:-27230868 | Msa0016440:CDS |
| TGGAAAGGTGGGAAGCATCT+TGG | 0.437963 | 1_1:-27228435 | Msa0016440:CDS |
| CATGGTTAATACAGGGAAAT+GGG | 0.442636 | 1_1:-27230150 | Msa0016440:intron |
| GAGGAGAGAGAAAGGGAAGA+TGG | 0.443990 | 1_1:+27231177 | None:intergenic |
| AAACACTTCACGTGAGACTT+TGG | 0.446385 | 1_1:+27230909 | None:intergenic |
| GGAAGTAGCGTTAGCGGCGG+CGG | 0.448739 | 1_1:+27231221 | None:intergenic |
| CGCTACTGAACATGGTTGCT+TGG | 0.449102 | 1_1:-27230815 | Msa0016440:CDS |
| GGGTAGGTTGGCTGTCCAAC+TGG | 0.450313 | 1_1:-27228879 | Msa0016440:CDS |
| TTCAGGGGAGGTCACGGTGG+AGG | 0.452073 | 1_1:-27228570 | Msa0016440:CDS |
| ATGTTGGAGTTTCCCTAGTT+GGG | 0.453564 | 1_1:-27230115 | Msa0016440:CDS |
| AACCAACTTGCTGTCTTTGG+TGG | 0.455394 | 1_1:+27229646 | None:intergenic |
| GCTGAAAAGCTCGGCGAAGC+TGG | 0.458612 | 1_1:-27231042 | Msa0016440:CDS |
| GGAAAAGAATAATGTAACTT+TGG | 0.460296 | 1_1:-27228126 | Msa0016440:three_prime_UTR |
| ATGAATTCAAGTGGATTCTC+AGG | 0.462448 | 1_1:+27228644 | None:intergenic |
| AAAGAATCTTTGCAAAGGAT+TGG | 0.466060 | 1_1:-27228317 | Msa0016440:CDS |
| GCACGATCAGCAGGAGCATA+AGG | 0.471790 | 1_1:+27230002 | None:intergenic |
| GTAATGGGATTTGGGAAGGT+TGG | 0.474064 | 1_1:-27230080 | Msa0016440:CDS |
| GGATGCACTTGTTAGAGCAT+TGG | 0.476077 | 1_1:-27229802 | Msa0016440:CDS |
| CTGTCGTTGGGGCTTTGAAA+GGG | 0.476987 | 1_1:-27229445 | Msa0016440:CDS |
| GGATTCTGGAATTGTAGCTC+AGG | 0.477094 | 1_1:-27229781 | Msa0016440:intron |
| GGAGGAGAGAGGGAGTTTGG+AGG | 0.479184 | 1_1:+27231158 | None:intergenic |
| TTGAGCATCTTATTGGTAGC+AGG | 0.483290 | 1_1:+27229897 | None:intergenic |
| AAGATCCAACCTTTGTAAGA+TGG | 0.485383 | 1_1:+27228525 | None:intergenic |
| GTAACTTACCTGAGCTTCCA+TGG | 0.486993 | 1_1:+27229580 | None:intergenic |
| TTCTCAGCAAGATCAACAAA+TGG | 0.487878 | 1_1:+27228905 | None:intergenic |
| TGCTAAGGGGCTTGGTATGA+AGG | 0.488921 | 1_1:-27230039 | Msa0016440:CDS |
| AGATCCAACCTTTGTAAGAT+GGG | 0.489776 | 1_1:+27228526 | None:intergenic |
| GCCATCACAGCTTGCTTGCG+TGG | 0.489963 | 1_1:+27228365 | None:intergenic |
| TGGGAGAGAAGTAAGTATGT+TGG | 0.490032 | 1_1:-27230131 | Msa0016440:CDS |
| GCTAGGCGTGCTAAGGGGCT+TGG | 0.491466 | 1_1:-27230047 | Msa0016440:CDS |
| GGGTTTAGCGTCGAGGGAAG+AGG | 0.493537 | 1_1:+27231077 | None:intergenic |
| AAAACAAATTCTTCAACAGC+AGG | 0.493626 | 1_1:+27228287 | None:intergenic |
| TTATTGGTAGCAGGCGTAAG+AGG | 0.493736 | 1_1:+27229906 | None:intergenic |
| CGAAGACGACGAGGGAACGG+CGG | 0.494219 | 1_1:+27231103 | None:intergenic |
| CGGAGAAGGCGGAGGAGAGA+GGG | 0.496667 | 1_1:+27231148 | None:intergenic |
| ATTTGGGAAGGTTGGAACTG+AGG | 0.497988 | 1_1:-27230072 | Msa0016440:CDS |
| AGACGAAGACGACGAGGGAA+CGG | 0.498132 | 1_1:+27231100 | None:intergenic |
| TGCCAGTACCATGGAAGCTC+AGG | 0.500424 | 1_1:-27229588 | Msa0016440:intron |
| GGTTTGGGAAGTAGCGTTAG+CGG | 0.502137 | 1_1:+27231215 | None:intergenic |
| GAAATAGCAGAAGCTGTCGT+TGG | 0.503793 | 1_1:-27229458 | Msa0016440:CDS |
| AAGATGGTGAAGGGAGACGG+AGG | 0.504509 | 1_1:+27231193 | None:intergenic |
| CATGGCTAGAAATGTTGCTC+AGG | 0.505750 | 1_1:-27230728 | Msa0016440:CDS |
| TTCACGAAAACACTGGATAT+GGG | 0.506220 | 1_1:+27228743 | None:intergenic |
| GTTACTGCAACACCTCATCT+TGG | 0.506235 | 1_1:-27229611 | Msa0016440:CDS |
| TGAGGTTGCTAGGCGTGCTA+AGG | 0.507332 | 1_1:-27230054 | Msa0016440:CDS |
| GGTGGAAGACTCAAGGTTGT+TGG | 0.507539 | 1_1:-27230877 | Msa0016440:CDS |
| TACCTGAGCTTCCATGGTAC+TGG | 0.508674 | 1_1:+27229586 | None:intergenic |
| TTGGCTGTCCAACTGGTAGC+AGG | 0.509470 | 1_1:-27228872 | Msa0016440:CDS |
| GAGTTTGGAGGAGAGAGAAA+GGG | 0.509782 | 1_1:+27231170 | None:intergenic |
| ATATGTCTGGCTGATGTGCC+CGG | 0.510140 | 1_1:-27228199 | Msa0016440:three_prime_UTR |
| TGGTATTGATAACGTGGATC+TGG | 0.510283 | 1_1:-27230842 | Msa0016440:CDS |
| AGAGAAAGGGAAGATGGTGA+AGG | 0.510419 | 1_1:+27231183 | None:intergenic |
| GGGGCGGAGGGAGACGGAGA+AGG | 0.511281 | 1_1:+27231134 | None:intergenic |
| AAGCAAGCTGTGATGGCAAT+CGG | 0.512460 | 1_1:-27228359 | Msa0016440:CDS |
| ACGGAGAAGGCGGAGGAGAG+AGG | 0.514088 | 1_1:+27231147 | None:intergenic |
| GCTGTCGTTGGGGCTTTGAA+AGG | 0.514440 | 1_1:-27229446 | Msa0016440:CDS |
| AACTTGCTGTCTTTGGTGGG+TGG | 0.516646 | 1_1:+27229650 | None:intergenic |
| TGCTGAGAAACTGGGTAGGT+TGG | 0.518778 | 1_1:-27228891 | Msa0016440:CDS |
| TCAGGGGAGGTCACGGTGGA+GGG | 0.520156 | 1_1:-27228569 | Msa0016440:CDS |
| CTAGTGCCATATCAGATTCA+GGG | 0.520803 | 1_1:-27228586 | Msa0016440:CDS |
| CGGCCATGTTTATGTTTGAG+AGG | 0.523214 | 1_1:+27231250 | None:intergenic |
| GAGGTTGCTAGGCGTGCTAA+GGG | 0.523235 | 1_1:-27230053 | Msa0016440:CDS |
| GAGAAAGGGAAGATGGTGAA+GGG | 0.525178 | 1_1:+27231184 | None:intergenic |
| CTTGATAACAGTCACAAGAC+AGG | 0.526093 | 1_1:+27231368 | None:intergenic |
| AGACGACGAGGGAACGGCGG+GGG | 0.527589 | 1_1:+27231106 | None:intergenic |
| CTCCTCAGGAGTGAGATTGT+AGG | 0.528475 | 1_1:+27230981 | None:intergenic |
| ACCAGGTATGATTGGAAAGG+TGG | 0.534240 | 1_1:-27228447 | Msa0016440:CDS |
| CGCGATCCCGTGTTCAGCGG+CGG | 0.534842 | 1_1:+27230762 | None:intergenic |
| ATAGCATGAGCACGATCAGC+AGG | 0.535627 | 1_1:+27229993 | None:intergenic |
| CTGTTGCCGCCGCTGAACAC+GGG | 0.536140 | 1_1:-27230768 | Msa0016440:CDS |
| CTGGCCGCCGCTACTGAACA+TGG | 0.544785 | 1_1:-27230823 | Msa0016440:CDS |
| CGCTTCCTCCTGCTACCAGT+TGG | 0.547036 | 1_1:+27228864 | None:intergenic |
| AGGTTGGAACTGAGGTTGCT+AGG | 0.547137 | 1_1:-27230064 | Msa0016440:CDS |
| ACCAACTTGCTGTCTTTGGT+GGG | 0.548749 | 1_1:+27229647 | None:intergenic |
| GCTGATGCTTCTATCAAAGC+TGG | 0.551395 | 1_1:-27230706 | Msa0016440:intron |
| ACTGTTGCCGCCGCTGAACA+CGG | 0.551728 | 1_1:-27230769 | Msa0016440:CDS |
| CCAAGTCCAGATTGCTAACG+TGG | 0.553204 | 1_1:-27228621 | Msa0016440:CDS |
| TACTGCAGTCAATGCACCAA+TGG | 0.553293 | 1_1:-27229411 | Msa0016440:CDS |
| ATCAGATTCAGGGGAGGTCA+CGG | 0.555338 | 1_1:-27228576 | Msa0016440:CDS |
| CACGGTGGAGGGTCGTGTGA+AGG | 0.556967 | 1_1:-27228558 | Msa0016440:CDS |
| TGCTGTAATGGGATTTGGGA+AGG | 0.561363 | 1_1:-27230084 | Msa0016440:CDS |
| TCCACGCAAGCAAGCTGTGA+TGG | 0.562816 | 1_1:-27228366 | Msa0016440:CDS |
| CTTCGTGCTATGATAACAAA+GGG | 0.568014 | 1_1:-27228776 | Msa0016440:CDS |
| GACGGTGGGTTTAGCGTCGA+GGG | 0.568041 | 1_1:+27231071 | None:intergenic |
| GCGGCAACAGTGTTAGCAGT+GGG | 0.570598 | 1_1:+27230781 | None:intergenic |
| CTTTGCAAAGATTCTTTGCG+TGG | 0.570600 | 1_1:+27228323 | None:intergenic |
| AAGTGACTTACGCTTCCGCT+AGG | 0.571734 | 1_1:-27228826 | Msa0016440:CDS |
| GAAGTTGATGTGAGTTTGGA+AGG | 0.575576 | 1_1:-27228500 | Msa0016440:CDS |
| ATCTTCCGGTGGAAGACTCA+AGG | 0.576123 | 1_1:-27230884 | Msa0016440:CDS |
| AATGTCAGCTTCATGAGTGT+TGG | 0.576599 | 1_1:-27228398 | Msa0016440:CDS |
| TGTCGTTGGGGCTTTGAAAG+GGG | 0.577535 | 1_1:-27229444 | Msa0016440:CDS |
| AGCAAGTGTCTTCCCAACTA+GGG | 0.578467 | 1_1:+27230103 | None:intergenic |
| TGAGTGAGTGAGTGAGTGAG+TGG | 0.581840 | 1_1:+27231285 | None:intergenic |
| CAACTGGTAGCAGGAGGAAG+CGG | 0.583181 | 1_1:-27228863 | Msa0016440:CDS |
| CCAGGTATGATTGGAAAGGT+GGG | 0.583244 | 1_1:-27228446 | Msa0016440:CDS |
| GTGGAGGGTCGTGTGAAGGA+TGG | 0.585025 | 1_1:-27228554 | Msa0016440:CDS |
| AGATGGTGAAGGGAGACGGA+GGG | 0.591266 | 1_1:+27231194 | None:intergenic |
| GACTTCACTGCTAAACAAAG+AGG | 0.591938 | 1_1:-27228707 | Msa0016440:CDS |
| TGGACTTGGATGAATTCAAG+TGG | 0.592769 | 1_1:+27228635 | None:intergenic |
| TCTTCGTGCTATGATAACAA+AGG | 0.593071 | 1_1:-27228777 | Msa0016440:CDS |
| AGTACCTCTGAGGAAACCAT+TGG | 0.593260 | 1_1:+27229395 | None:intergenic |
| GATCCAACCTTTGTAAGATG+GGG | 0.598278 | 1_1:+27228527 | None:intergenic |
| TCAGCTTCATGAGTGTTGGA+AGG | 0.600265 | 1_1:-27228394 | Msa0016440:CDS |
| AAGAGGAGACGAAGACGACG+AGG | 0.601153 | 1_1:+27231094 | None:intergenic |
| AGTGACTTACGCTTCCGCTA+GGG | 0.601349 | 1_1:-27228825 | Msa0016440:CDS |
| GAGCGCGATCCCGTGTTCAG+CGG | 0.601676 | 1_1:+27230759 | None:intergenic |
| GATCGCGCTCTTAGCTGGCA+TGG | 0.602254 | 1_1:-27230746 | Msa0016440:CDS |
| GTTGTTGGTAGAGCTGGTGT+TGG | 0.603479 | 1_1:-27230862 | Msa0016440:CDS |
| CACGCAAAGAATCTTTGCAA+AGG | 0.603720 | 1_1:-27228322 | Msa0016440:CDS |
| GAGTGAGTGAGTGAGTGAGT+GGG | 0.604209 | 1_1:+27231286 | None:intergenic |
| ATTGTTAATGTTGCTCGTGG+TGG | 0.608712 | 1_1:-27229837 | Msa0016440:CDS |
| TCATCTTGGTGCCAGTACCA+TGG | 0.610967 | 1_1:-27229597 | Msa0016440:CDS |
| GCAACCATGTTCAGTAGCGG+CGG | 0.612837 | 1_1:+27230819 | None:intergenic |
| GGACGGTGGGTTTAGCGTCG+AGG | 0.613960 | 1_1:+27231070 | None:intergenic |
| ATGGTACTGGCACCAAGATG+AGG | 0.614100 | 1_1:+27229599 | None:intergenic |
| AACAACCTTGAGTCTTCCAC+CGG | 0.614270 | 1_1:+27230879 | None:intergenic |
| AGTGTGTAGGTGAGTTTAGG+GGG | 0.619794 | 1_1:-27228153 | Msa0016440:three_prime_UTR |
| GTCCTCGTCGCTGAAAAGCT+CGG | 0.619802 | 1_1:-27231051 | Msa0016440:CDS |
| TTGGGAAGTAGCGTTAGCGG+CGG | 0.621158 | 1_1:+27231218 | None:intergenic |
| AACTAAGTTCACGAAAACAC+TGG | 0.623332 | 1_1:+27228736 | None:intergenic |
| TGCACCAATGGTTTCCTCAG+AGG | 0.628022 | 1_1:-27229399 | Msa0016440:intron |
| AGGTTGCTAGGCGTGCTAAG+GGG | 0.630349 | 1_1:-27230052 | Msa0016440:CDS |
| TCAACCAGGTATGATTGGAA+AGG | 0.630443 | 1_1:-27228450 | Msa0016440:CDS |
| GTTGATCTTGCTGAGAAACT+GGG | 0.632655 | 1_1:-27228899 | Msa0016440:CDS |
| GGCGGCAACAGTGTTAGCAG+TGG | 0.634521 | 1_1:+27230780 | None:intergenic |
| TTGATAACAGTCACAAGACA+GGG | 0.642046 | 1_1:+27231369 | None:intergenic |
| AGAATTGTTAATGTTGCTCG+TGG | 0.642633 | 1_1:-27229840 | Msa0016440:CDS |
| AGAGGAGACGAAGACGACGA+GGG | 0.647210 | 1_1:+27231095 | None:intergenic |
| ACTTCACTGCTAAACAAAGA+GGG | 0.657467 | 1_1:-27228706 | Msa0016440:CDS |
| ACCCACCAAAGACAGCAAGT+TGG | 0.658654 | 1_1:-27229648 | Msa0016440:CDS |
| GAAGTGTTTGAATCTTCCGG+TGG | 0.658805 | 1_1:-27230895 | Msa0016440:CDS |
| ACACCTCTCAAACATAAACA+TGG | 0.660993 | 1_1:-27231253 | Msa0016440:exon |
| AAGTGTGTAGGTGAGTTTAG+GGG | 0.662291 | 1_1:-27228154 | Msa0016440:three_prime_UTR |
| ATCCAACCTTTGTAAGATGG+GGG | 0.663549 | 1_1:+27228528 | None:intergenic |
| TAGTGCCATATCAGATTCAG+GGG | 0.665071 | 1_1:-27228585 | Msa0016440:CDS |
| GACGAGTGTCAAGATCATCA+GGG | 0.667404 | 1_1:+27228801 | None:intergenic |
| AAGATCATCAGGGGCCCTAG+CGG | 0.668439 | 1_1:+27228811 | None:intergenic |
| AAGAGGGCTAAGAATTACTG+AGG | 0.668513 | 1_1:-27228690 | Msa0016440:CDS |
| TGCAGGCAAGTAGATCAACC+AGG | 0.669453 | 1_1:-27228464 | Msa0016440:CDS |
| CTCCTACAATCTCACTCCTG+AGG | 0.670177 | 1_1:-27230983 | Msa0016440:CDS |
| CAAGCAACCATGTTCAGTAG+CGG | 0.672617 | 1_1:+27230816 | None:intergenic |
| CAAAGAGATGAAATCAGCGG+TGG | 0.673605 | 1_1:+27229935 | None:intergenic |
| AGATTCAGGGGAGGTCACGG+TGG | 0.674117 | 1_1:-27228573 | Msa0016440:CDS |
| GCTGTCCAACTGGTAGCAGG+AGG | 0.676150 | 1_1:-27228869 | Msa0016440:CDS |
| AAGACGACGAGGGAACGGCG+GGG | 0.677271 | 1_1:+27231105 | None:intergenic |
| GATGCTCTCATCGTTCGCAG+TGG | 0.681979 | 1_1:-27230934 | Msa0016440:CDS |
| ACGAGTGTCAAGATCATCAG+GGG | 0.682389 | 1_1:+27228802 | None:intergenic |
| TCATCATTGAACAAGTGTGT+AGG | 0.682782 | 1_1:-27228166 | Msa0016440:three_prime_UTR |
| TGCCATATCAGATTCAGGGG+AGG | 0.684990 | 1_1:-27228582 | Msa0016440:CDS |
| AATGATGATACATCAAAACC+GGG | 0.687508 | 1_1:+27228181 | None:intergenic |
| AATAGCAGAAGCTGTCGTTG+GGG | 0.700433 | 1_1:-27229456 | Msa0016440:CDS |
| GTGCAAAGAGATGAAATCAG+CGG | 0.712158 | 1_1:+27229932 | None:intergenic |
| ATCTTGCTGAGAAACTGGGT+AGG | 0.734226 | 1_1:-27228895 | Msa0016440:CDS |
| TGGTGTTGGTATTGATAACG+TGG | 0.740226 | 1_1:-27230848 | Msa0016440:CDS |
| TCGTGGTGGAGTCATTGACG+AGG | 0.747608 | 1_1:-27229823 | Msa0016440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAGTGTTAGTTATTT+GGG | - | chr1_1:27228811-27228830 | Msa0016440:CDS | 15.0% |
| !! | TAATTTAAGTAAACTAAAAG+TGG | + | chr1_1:27229667-27229686 | None:intergenic | 15.0% |
| !!! | TATTTTCATCATGAAATAAA+AGG | + | chr1_1:27230062-27230081 | None:intergenic | 15.0% |
| !!! | TTTCTGTTGTATTTTATTTT+TGG | - | chr1_1:27231178-27231197 | Msa0016440:CDS | 15.0% |
| !!! | TTGTATTTTATTTTTGGATT+GGG | - | chr1_1:27231184-27231203 | Msa0016440:CDS | 15.0% |
| !!! | TCATTTTTATTTGGAAATAA+AGG | - | chr1_1:27231346-27231365 | Msa0016440:five_prime_UTR | 15.0% |
| !!! | CATTTTTATTTGGAAATAAA+GGG | - | chr1_1:27231347-27231366 | Msa0016440:five_prime_UTR | 15.0% |
| !!! | GTTTTTTAGTGTTAGTTATT+TGG | - | chr1_1:27228810-27228829 | Msa0016440:CDS | 20.0% |
| !! | TTTATATTGTTAACTACTAG+TGG | - | chr1_1:27228871-27228890 | Msa0016440:CDS | 20.0% |
| !! | TTGAGATCTAATGATATATA+TGG | - | chr1_1:27228982-27229001 | Msa0016440:intron | 20.0% |
| !! | TGAGATCTAATGATATATAT+GGG | - | chr1_1:27228983-27229002 | Msa0016440:intron | 20.0% |
| !! | TTTGAGAAAATGACATAATT+CGG | + | chr1_1:27229160-27229179 | None:intergenic | 20.0% |
| !!! | CAAAGAATTTAGAATGATTT+TGG | + | chr1_1:27230147-27230166 | None:intergenic | 20.0% |
| !!! | TCGTTTTCAATATATGAATA+TGG | + | chr1_1:27230183-27230202 | None:intergenic | 20.0% |
| !!! | TCATATATTGAAAACGATTT+TGG | - | chr1_1:27230186-27230205 | Msa0016440:intron | 20.0% |
| !! | CAAATTAAATACTAAAGTGA+AGG | - | chr1_1:27230264-27230283 | Msa0016440:intron | 20.0% |
| !! | TCATAATACAAAATGATTCA+TGG | - | chr1_1:27230386-27230405 | Msa0016440:intron | 20.0% |
| !! | ACATTTAATCTTACAACTTA+AGG | + | chr1_1:27231147-27231166 | None:intergenic | 20.0% |
| !!! | GTTGTATTTTATTTTTGGAT+TGG | - | chr1_1:27231183-27231202 | Msa0016440:CDS | 20.0% |
| !!! | TGTATTTTATTTTTGGATTG+GGG | - | chr1_1:27231185-27231204 | Msa0016440:CDS | 20.0% |
| ! | AAAAACACAACAAAATCATC+AGG | + | chr1_1:27228796-27228815 | None:intergenic | 25.0% |
| !! | TGGTAAAATTTTCTGTGTAA+AGG | - | chr1_1:27228908-27228927 | Msa0016440:CDS | 25.0% |
| !! | TAAAATTTTCTGTGTAAAGG+AGG | - | chr1_1:27228911-27228930 | Msa0016440:CDS | 25.0% |
| ! | GAGATCTAATGATATATATG+GGG | - | chr1_1:27228984-27229003 | Msa0016440:intron | 25.0% |
| ! | AGATCTAATGATATATATGG+GGG | - | chr1_1:27228985-27229004 | Msa0016440:intron | 25.0% |
| !! | GCATAAGTTATTAGTTGATA+TGG | - | chr1_1:27229214-27229233 | Msa0016440:intron | 25.0% |
| !!! | ATTGAATTAGTGTTGATACA+TGG | - | chr1_1:27229240-27229259 | Msa0016440:intron | 25.0% |
| !!! | AAAACGATTTTGGAACAAAA+TGG | - | chr1_1:27230196-27230215 | Msa0016440:intron | 25.0% |
| !!! | AGTATTTAATTTGAACCAGT+TGG | + | chr1_1:27230257-27230276 | None:intergenic | 25.0% |
| ! | GATTTGAGAAATCTAATACA+AGG | - | chr1_1:27230296-27230315 | Msa0016440:intron | 25.0% |
| !! | CTTAATGAGTTTTTATTGCT+CGG | - | chr1_1:27230321-27230340 | Msa0016440:intron | 25.0% |
| ! | ATACAAAATGATTCATGGAT+TGG | - | chr1_1:27230391-27230410 | Msa0016440:intron | 25.0% |
| ! | GGAAAAGAATAATGTAACTT+TGG | - | chr1_1:27231282-27231301 | Msa0016440:five_prime_UTR | 25.0% |
| !!! | CATGCTTGTTCATTTTTATT+TGG | - | chr1_1:27231337-27231356 | Msa0016440:five_prime_UTR | 25.0% |
| ! | AACTCATCAAGTGAAGTTTT+GGG | + | chr1_1:27228082-27228101 | None:intergenic | 30.0% |
| ! | TTTTTGTCCTCATATATACG+TGG | - | chr1_1:27228938-27228957 | Msa0016440:intron | 30.0% |
| TTCTTCCGTATAATCTGTAA+TGG | - | chr1_1:27229028-27229047 | Msa0016440:intron | 30.0% | |
| TCTTCCGTATAATCTGTAAT+GGG | - | chr1_1:27229029-27229048 | Msa0016440:intron | 30.0% | |
| AACACCCATTACAGATTATA+CGG | + | chr1_1:27229036-27229055 | None:intergenic | 30.0% | |
| TGTTGATACATGGTTAATAC+AGG | - | chr1_1:27229250-27229269 | Msa0016440:intron | 30.0% | |
| GTTGATACATGGTTAATACA+GGG | - | chr1_1:27229251-27229270 | Msa0016440:intron | 30.0% | |
| ! | TAATAGTTTGTGTCTGTTTC+AGG | - | chr1_1:27229709-27229728 | Msa0016440:intron | 30.0% |
| ATAGTCATAGGCAATTACTT+AGG | + | chr1_1:27229853-27229872 | None:intergenic | 30.0% | |
| AAGCTATAACTCATAGTCAT+AGG | + | chr1_1:27229865-27229884 | None:intergenic | 30.0% | |
| TTTCAAAGGTTATTAGACAC+TGG | + | chr1_1:27229904-27229923 | None:intergenic | 30.0% | |
| ! | AACCTTTGAAAATAATGACC+AGG | - | chr1_1:27229913-27229932 | Msa0016440:CDS | 30.0% |
| ! | TTCCTGGTCATTATTTTCAA+AGG | + | chr1_1:27229918-27229937 | None:intergenic | 30.0% |
| TTTGAAAATAATGACCAGGA+AGG | - | chr1_1:27229917-27229936 | Msa0016440:CDS | 30.0% | |
| ! | ATGTTGCTTGGATATAGATA+AGG | + | chr1_1:27230119-27230138 | None:intergenic | 30.0% |
| TTATCTATATCCAAGCAACA+TGG | - | chr1_1:27230118-27230137 | Msa0016440:CDS | 30.0% | |
| !! | ATTGGAGTTGGTGATAAATT+TGG | - | chr1_1:27230409-27230428 | Msa0016440:intron | 30.0% |
| !!! | TTTTGAAGTTGATGTGAGTT+TGG | - | chr1_1:27230904-27230923 | Msa0016440:CDS | 30.0% |
| AAAGAATCTTTGCAAAGGAT+TGG | - | chr1_1:27231091-27231110 | Msa0016440:CDS | 30.0% | |
| AAAACAAATTCTTCAACAGC+AGG | + | chr1_1:27231124-27231143 | None:intergenic | 30.0% | |
| AATGATGATACATCAAAACC+GGG | + | chr1_1:27231230-27231249 | None:intergenic | 30.0% | |
| CAATGATGATACATCAAAAC+CGG | + | chr1_1:27231231-27231250 | None:intergenic | 30.0% | |
| TGGAATGAATTGTGATTTAC+TGG | - | chr1_1:27231302-27231321 | Msa0016440:five_prime_UTR | 30.0% | |
| ! | TTGATAACAGTCACAAGACA+GGG | + | chr1_1:27228042-27228061 | None:intergenic | 35.0% |
| ! | CAACTCATCAAGTGAAGTTT+TGG | + | chr1_1:27228083-27228102 | None:intergenic | 35.0% |
| ACACCTCTCAAACATAAACA+TGG | - | chr1_1:27228155-27228174 | Msa0016440:three_prime_UTR | 35.0% | |
| !! | TTGTTAACTACTAGTGGACT+AGG | - | chr1_1:27228877-27228896 | Msa0016440:CDS | 35.0% |
| GAGTTAACCACGTATATATG+AGG | + | chr1_1:27228948-27228967 | None:intergenic | 35.0% | |
| !! | TGTAATGGGTGTTAATGTTG+TGG | - | chr1_1:27229043-27229062 | Msa0016440:intron | 35.0% |
| ! | ACATTGTCACTTCTGATCAA+AGG | - | chr1_1:27229086-27229105 | Msa0016440:intron | 35.0% |
| ACATGGTTAATACAGGGAAA+TGG | - | chr1_1:27229257-27229276 | Msa0016440:intron | 35.0% | |
| CATGGTTAATACAGGGAAAT+GGG | - | chr1_1:27229258-27229277 | Msa0016440:intron | 35.0% | |
| CTCATCATTGAGCATCTTAT+TGG | + | chr1_1:27229521-27229540 | None:intergenic | 35.0% | |
| ! | ACTTTTGCCAAGATGAAGAA+AGG | - | chr1_1:27229541-27229560 | Msa0016440:intron | 35.0% |
| TCTAACTCCTTTCTTCATCT+TGG | + | chr1_1:27229551-27229570 | None:intergenic | 35.0% | |
| AGAATTGTTAATGTTGCTCG+TGG | - | chr1_1:27229568-27229587 | Msa0016440:intron | 35.0% | |
| GTAACAATATCAAGAGGCAA+AGG | + | chr1_1:27230086-27230105 | None:intergenic | 35.0% | |
| GAAGCAGTAACAATATCAAG+AGG | + | chr1_1:27230092-27230111 | None:intergenic | 35.0% | |
| !! | ATTTTGGAAACCATGTTGCT+TGG | + | chr1_1:27230131-27230150 | None:intergenic | 35.0% |
| GATAAAGCCAGCTTCAAAAT+TGG | + | chr1_1:27230357-27230376 | None:intergenic | 35.0% | |
| !! | AATGATTCATGGATTGGAGT+TGG | - | chr1_1:27230397-27230416 | Msa0016440:intron | 35.0% |
| TTCTCAGCAAGATCAACAAA+TGG | + | chr1_1:27230506-27230525 | None:intergenic | 35.0% | |
| TCTTCGTGCTATGATAACAA+AGG | - | chr1_1:27230631-27230650 | Msa0016440:intron | 35.0% | |
| CTTCGTGCTATGATAACAAA+GGG | - | chr1_1:27230632-27230651 | Msa0016440:intron | 35.0% | |
| TTCACGAAAACACTGGATAT+GGG | + | chr1_1:27230668-27230687 | None:intergenic | 35.0% | |
| AACTAAGTTCACGAAAACAC+TGG | + | chr1_1:27230675-27230694 | None:intergenic | 35.0% | |
| ACTTCACTGCTAAACAAAGA+GGG | - | chr1_1:27230702-27230721 | Msa0016440:intron | 35.0% | |
| ! | ATGAATTCAAGTGGATTCTC+AGG | + | chr1_1:27230767-27230786 | None:intergenic | 35.0% |
| AGATCCAACCTTTGTAAGAT+GGG | + | chr1_1:27230885-27230904 | None:intergenic | 35.0% | |
| AAGATCCAACCTTTGTAAGA+TGG | + | chr1_1:27230886-27230905 | None:intergenic | 35.0% | |
| AAGGTAGCATTATACTTTGC+AGG | - | chr1_1:27230927-27230946 | Msa0016440:CDS | 35.0% | |
| TCATCATTGAACAAGTGTGT+AGG | - | chr1_1:27231242-27231261 | Msa0016440:exon | 35.0% | |
| ! | CTTGATAACAGTCACAAGAC+AGG | + | chr1_1:27228043-27228062 | None:intergenic | 40.0% |
| AAACACTTCACGTGAGACTT+TGG | + | chr1_1:27228502-27228521 | None:intergenic | 40.0% | |
| ! | CGTGAAGTGTTTGAATCTTC+CGG | - | chr1_1:27228510-27228529 | Msa0016440:CDS | 40.0% |
| !! | TGGTGTTGGTATTGATAACG+TGG | - | chr1_1:27228560-27228579 | Msa0016440:CDS | 40.0% |
| !! | TGGTATTGATAACGTGGATC+TGG | - | chr1_1:27228566-27228585 | Msa0016440:CDS | 40.0% |
| TTTGTCACATATGCCGTTGT+CGG | + | chr1_1:27229136-27229155 | None:intergenic | 40.0% | |
| TGGGAGAGAAGTAAGTATGT+TGG | - | chr1_1:27229277-27229296 | Msa0016440:intron | 40.0% | |
| TATGTTGGAGTTTCCCTAGT+TGG | - | chr1_1:27229292-27229311 | Msa0016440:intron | 40.0% | |
| ATGTTGGAGTTTCCCTAGTT+GGG | - | chr1_1:27229293-27229312 | Msa0016440:intron | 40.0% | |
| !! | ACACTTGCTGTAATGGGATT+TGG | - | chr1_1:27229319-27229338 | Msa0016440:intron | 40.0% |
| !! | CACTTGCTGTAATGGGATTT+GGG | - | chr1_1:27229320-27229339 | Msa0016440:intron | 40.0% |
| ! | TGTTGAGCTTGTGAGTTTTG+AGG | - | chr1_1:27229441-27229460 | Msa0016440:CDS | 40.0% |
| GTGCAAAGAGATGAAATCAG+CGG | + | chr1_1:27229479-27229498 | None:intergenic | 40.0% | |
| ! | TTGAGCATCTTATTGGTAGC+AGG | + | chr1_1:27229514-27229533 | None:intergenic | 40.0% |
| ATTGTTAATGTTGCTCGTGG+TGG | - | chr1_1:27229571-27229590 | Msa0016440:intron | 40.0% | |
| !! | CTTGTTAGAGCATTGGATTC+TGG | - | chr1_1:27229613-27229632 | Msa0016440:CDS | 40.0% |
| ! | TAGTTTGTGTCTGTTTCAGG+CGG | - | chr1_1:27229712-27229731 | Msa0016440:intron | 40.0% |
| !! | CATAACCAACTTGCTGTCTT+TGG | + | chr1_1:27229768-27229787 | None:intergenic | 40.0% |
| ATTAGACACTGGTGGCAAAA+GGG | + | chr1_1:27229893-27229912 | None:intergenic | 40.0% | |
| TATTAGACACTGGTGGCAAA+AGG | + | chr1_1:27229894-27229913 | None:intergenic | 40.0% | |
| CAAAGGTTATTAGACACTGG+TGG | + | chr1_1:27229901-27229920 | None:intergenic | 40.0% | |
| TTTCAATAGCTACACCTTCC+TGG | + | chr1_1:27229934-27229953 | None:intergenic | 40.0% | |
| AAATAGCAGAAGCTGTCGTT+GGG | - | chr1_1:27229951-27229970 | Msa0016440:CDS | 40.0% | |
| ! | TTTTGTTCCTAGTACCTCTG+AGG | + | chr1_1:27230026-27230045 | None:intergenic | 40.0% |
| !!! | TATCCCTCCAATTTTGAAGC+TGG | - | chr1_1:27230347-27230366 | Msa0016440:intron | 40.0% |
| AAGCCAGCTTCAAAATTGGA+GGG | + | chr1_1:27230353-27230372 | None:intergenic | 40.0% | |
| AAAGCCAGCTTCAAAATTGG+AGG | + | chr1_1:27230354-27230373 | None:intergenic | 40.0% | |
| ! | TTGGTGATAAATTTGGCGAC+TGG | - | chr1_1:27230416-27230435 | Msa0016440:intron | 40.0% |
| ! | TTCATTCCTTTGTGACTTGC+AGG | - | chr1_1:27230463-27230482 | Msa0016440:intron | 40.0% |
| TTAACACCTGCAAGTCACAA+AGG | + | chr1_1:27230472-27230491 | None:intergenic | 40.0% | |
| TGTTGATCTTGCTGAGAAAC+TGG | - | chr1_1:27230508-27230527 | Msa0016440:intron | 40.0% | |
| GTTGATCTTGCTGAGAAACT+GGG | - | chr1_1:27230509-27230528 | Msa0016440:intron | 40.0% | |
| GTTCACGAAAACACTGGATA+TGG | + | chr1_1:27230669-27230688 | None:intergenic | 40.0% | |
| GACTTCACTGCTAAACAAAG+AGG | - | chr1_1:27230701-27230720 | Msa0016440:intron | 40.0% | |
| AAGAGGGCTAAGAATTACTG+AGG | - | chr1_1:27230718-27230737 | Msa0016440:CDS | 40.0% | |
| GAGGAGAGAGTTATTCTTGA+TGG | - | chr1_1:27230737-27230756 | Msa0016440:CDS | 40.0% | |
| TGGACTTGGATGAATTCAAG+TGG | + | chr1_1:27230776-27230795 | None:intergenic | 40.0% | |
| CTAGTGCCATATCAGATTCA+GGG | - | chr1_1:27230822-27230841 | Msa0016440:CDS | 40.0% | |
| TAGTGCCATATCAGATTCAG+GGG | - | chr1_1:27230823-27230842 | Msa0016440:CDS | 40.0% | |
| ATCCAACCTTTGTAAGATGG+GGG | + | chr1_1:27230883-27230902 | None:intergenic | 40.0% | |
| GATCCAACCTTTGTAAGATG+GGG | + | chr1_1:27230884-27230903 | None:intergenic | 40.0% | |
| !! | GAAGTTGATGTGAGTTTGGA+AGG | - | chr1_1:27230908-27230927 | Msa0016440:CDS | 40.0% |
| GTAGATCAACCAGGTATGAT+TGG | - | chr1_1:27230953-27230972 | Msa0016440:CDS | 40.0% | |
| TCAACCAGGTATGATTGGAA+AGG | - | chr1_1:27230958-27230977 | Msa0016440:CDS | 40.0% | |
| AATGTCAGCTTCATGAGTGT+TGG | - | chr1_1:27231010-27231029 | Msa0016440:CDS | 40.0% | |
| CTTTGCAAAGATTCTTTGCG+TGG | + | chr1_1:27231088-27231107 | None:intergenic | 40.0% | |
| CACGCAAAGAATCTTTGCAA+AGG | - | chr1_1:27231086-27231105 | Msa0016440:CDS | 40.0% | |
| ACAAGTGTGTAGGTGAGTTT+AGG | - | chr1_1:27231252-27231271 | Msa0016440:exon | 40.0% | |
| CAAGTGTGTAGGTGAGTTTA+GGG | - | chr1_1:27231253-27231272 | Msa0016440:exon | 40.0% | |
| AAGTGTGTAGGTGAGTTTAG+GGG | - | chr1_1:27231254-27231273 | Msa0016440:exon | 40.0% | |
| CGGCCATGTTTATGTTTGAG+AGG | + | chr1_1:27228161-27228180 | None:intergenic | 45.0% | |
| GAGAAAGGGAAGATGGTGAA+GGG | + | chr1_1:27228227-27228246 | None:intergenic | 45.0% | |
| AGAGAAAGGGAAGATGGTGA+AGG | + | chr1_1:27228228-27228247 | None:intergenic | 45.0% | |
| GAGTTTGGAGGAGAGAGAAA+GGG | + | chr1_1:27228241-27228260 | None:intergenic | 45.0% | |
| AGCATCACAGAGAGAGATCT+TGG | + | chr1_1:27228460-27228479 | None:intergenic | 45.0% | |
| ! | GAAGTGTTTGAATCTTCCGG+TGG | - | chr1_1:27228513-27228532 | Msa0016440:CDS | 45.0% |
| AACAACCTTGAGTCTTCCAC+CGG | + | chr1_1:27228532-27228551 | None:intergenic | 45.0% | |
| CAAGCAACCATGTTCAGTAG+CGG | + | chr1_1:27228595-27228614 | None:intergenic | 45.0% | |
| CATGGCTAGAAATGTTGCTC+AGG | - | chr1_1:27228680-27228699 | Msa0016440:CDS | 45.0% | |
| GCTGATGCTTCTATCAAAGC+TGG | - | chr1_1:27228702-27228721 | Msa0016440:CDS | 45.0% | |
| !! | TAGTGGACTAGGTGACGTAA+TGG | - | chr1_1:27228888-27228907 | Msa0016440:CDS | 45.0% |
| AGCAAGTGTCTTCCCAACTA+GGG | + | chr1_1:27229308-27229327 | None:intergenic | 45.0% | |
| !! | TGGGAAGACACTTGCTGTAA+TGG | - | chr1_1:27229312-27229331 | Msa0016440:intron | 45.0% |
| !! | GGGAAGACACTTGCTGTAAT+GGG | - | chr1_1:27229313-27229332 | Msa0016440:intron | 45.0% |
| ! | TGCTGTAATGGGATTTGGGA+AGG | - | chr1_1:27229324-27229343 | Msa0016440:intron | 45.0% |
| ! | GTAATGGGATTTGGGAAGGT+TGG | - | chr1_1:27229328-27229347 | Msa0016440:intron | 45.0% |
| ATTTGGGAAGGTTGGAACTG+AGG | - | chr1_1:27229336-27229355 | Msa0016440:intron | 45.0% | |
| !!! | TGAGCTTGTGAGTTTTGAGG+AGG | - | chr1_1:27229444-27229463 | Msa0016440:CDS | 45.0% |
| CAAAGAGATGAAATCAGCGG+TGG | + | chr1_1:27229476-27229495 | None:intergenic | 45.0% | |
| ! | TTATTGGTAGCAGGCGTAAG+AGG | + | chr1_1:27229505-27229524 | None:intergenic | 45.0% |
| ! | GGATGCACTTGTTAGAGCAT+TGG | - | chr1_1:27229606-27229625 | Msa0016440:CDS | 45.0% |
| !! | GGATTCTGGAATTGTAGCTC+AGG | - | chr1_1:27229627-27229646 | Msa0016440:CDS | 45.0% |
| !! | ACCAACTTGCTGTCTTTGGT+GGG | + | chr1_1:27229764-27229783 | None:intergenic | 45.0% |
| !! | AACCAACTTGCTGTCTTTGG+TGG | + | chr1_1:27229765-27229784 | None:intergenic | 45.0% |
| GTTACTGCAACACCTCATCT+TGG | - | chr1_1:27229797-27229816 | Msa0016440:CDS | 45.0% | |
| GTAACTTACCTGAGCTTCCA+TGG | + | chr1_1:27229831-27229850 | None:intergenic | 45.0% | |
| TTAGACACTGGTGGCAAAAG+GGG | + | chr1_1:27229892-27229911 | None:intergenic | 45.0% | |
| GAAATAGCAGAAGCTGTCGT+TGG | - | chr1_1:27229950-27229969 | Msa0016440:CDS | 45.0% | |
| AATAGCAGAAGCTGTCGTTG+GGG | - | chr1_1:27229952-27229971 | Msa0016440:CDS | 45.0% | |
| TACTGCAGTCAATGCACCAA+TGG | - | chr1_1:27229997-27230016 | Msa0016440:CDS | 45.0% | |
| ! | AGTACCTCTGAGGAAACCAT+TGG | + | chr1_1:27230016-27230035 | None:intergenic | 45.0% |
| !! | ATGGTTTCCTCAGAGGTACT+AGG | - | chr1_1:27230016-27230035 | Msa0016440:CDS | 45.0% |
| TCAACTGCTATGTGTCCAAC+TGG | - | chr1_1:27230239-27230258 | Msa0016440:intron | 45.0% | |
| ATCTTGCTGAGAAACTGGGT+AGG | - | chr1_1:27230513-27230532 | Msa0016440:intron | 45.0% | |
| ACGAGTGTCAAGATCATCAG+GGG | + | chr1_1:27230609-27230628 | None:intergenic | 45.0% | |
| GACGAGTGTCAAGATCATCA+GGG | + | chr1_1:27230610-27230629 | None:intergenic | 45.0% | |
| AGACGAGTGTCAAGATCATC+AGG | + | chr1_1:27230611-27230630 | None:intergenic | 45.0% | |
| GAGATTCCACGTTAGCAATC+TGG | + | chr1_1:27230796-27230815 | None:intergenic | 45.0% | |
| GCTAGTGCCATATCAGATTC+AGG | - | chr1_1:27230821-27230840 | Msa0016440:CDS | 45.0% | |
| ACCAGGTATGATTGGAAAGG+TGG | - | chr1_1:27230961-27230980 | Msa0016440:CDS | 45.0% | |
| CCAGGTATGATTGGAAAGGT+GGG | - | chr1_1:27230962-27230981 | Msa0016440:CDS | 45.0% | |
| !! | TCAGCTTCATGAGTGTTGGA+AGG | - | chr1_1:27231014-27231033 | Msa0016440:CDS | 45.0% |
| AAGCAAGCTGTGATGGCAAT+CGG | - | chr1_1:27231049-27231068 | Msa0016440:CDS | 45.0% | |
| ! | TTTGGATTGGGGCATATGTC+TGG | - | chr1_1:27231196-27231215 | Msa0016440:CDS | 45.0% |
| AGTGTGTAGGTGAGTTTAGG+GGG | - | chr1_1:27231255-27231274 | Msa0016440:exon | 45.0% | |
| !! | TACTTAAATTAATAATTAAT+TGG | - | chr1_1:27229676-27229695 | Msa0016440:CDS | 5.0% |
| !! | ACTTAAATTAATAATTAATT+GGG | - | chr1_1:27229677-27229696 | Msa0016440:CDS | 5.0% |
| GAGTGAGTGAGTGAGTGAGT+GGG | + | chr1_1:27228125-27228144 | None:intergenic | 50.0% | |
| TGAGTGAGTGAGTGAGTGAG+TGG | + | chr1_1:27228126-27228145 | None:intergenic | 50.0% | |
| GGTTTGGGAAGTAGCGTTAG+CGG | + | chr1_1:27228196-27228215 | None:intergenic | 50.0% | |
| GAGGAGAGAGAAAGGGAAGA+TGG | + | chr1_1:27228234-27228253 | None:intergenic | 50.0% | |
| GGAGTTTGGAGGAGAGAGAA+AGG | + | chr1_1:27228242-27228261 | None:intergenic | 50.0% | |
| CTCCTACAATCTCACTCCTG+AGG | - | chr1_1:27228425-27228444 | Msa0016440:CDS | 50.0% | |
| CTCCTCAGGAGTGAGATTGT+AGG | + | chr1_1:27228430-27228449 | None:intergenic | 50.0% | |
| ! | ATCTTGGTGCAAAGCTCCTC+AGG | + | chr1_1:27228444-27228463 | None:intergenic | 50.0% |
| ATCTTCCGGTGGAAGACTCA+AGG | - | chr1_1:27228524-27228543 | Msa0016440:CDS | 50.0% | |
| GGTGGAAGACTCAAGGTTGT+TGG | - | chr1_1:27228531-27228550 | Msa0016440:CDS | 50.0% | |
| ! | CTCAAGGTTGTTGGTAGAGC+TGG | - | chr1_1:27228540-27228559 | Msa0016440:CDS | 50.0% |
| ! | GTTGTTGGTAGAGCTGGTGT+TGG | - | chr1_1:27228546-27228565 | Msa0016440:CDS | 50.0% |
| CGCTACTGAACATGGTTGCT+TGG | - | chr1_1:27228593-27228612 | Msa0016440:CDS | 50.0% | |
| TGAGTGTCTGACACCGACAA+CGG | - | chr1_1:27229120-27229139 | Msa0016440:intron | 50.0% | |
| CAGCAAGTGTCTTCCCAACT+AGG | + | chr1_1:27229309-27229328 | None:intergenic | 50.0% | |
| AGGTTGGAACTGAGGTTGCT+AGG | - | chr1_1:27229344-27229363 | Msa0016440:intron | 50.0% | |
| ! | TGCTAAGGGGCTTGGTATGA+AGG | - | chr1_1:27229369-27229388 | Msa0016440:intron | 50.0% |
| ATAGCATGAGCACGATCAGC+AGG | + | chr1_1:27229418-27229437 | None:intergenic | 50.0% | |
| GCTGATCGTGCTCATGCTAT+TGG | - | chr1_1:27229418-27229437 | Msa0016440:CDS | 50.0% | |
| ! | GGCGGCTCTTGATGTTTTCA+CGG | - | chr1_1:27229730-27229749 | Msa0016440:intron | 50.0% |
| ! | GGCTCTTGATGTTTTCACGG+TGG | - | chr1_1:27229733-27229752 | Msa0016440:intron | 50.0% |
| !! | AACTTGCTGTCTTTGGTGGG+TGG | + | chr1_1:27229761-27229780 | None:intergenic | 50.0% |
| ACCCACCAAAGACAGCAAGT+TGG | - | chr1_1:27229760-27229779 | Msa0016440:intron | 50.0% | |
| !! | ATGGTACTGGCACCAAGATG+AGG | + | chr1_1:27229812-27229831 | None:intergenic | 50.0% |
| !! | TCATCTTGGTGCCAGTACCA+TGG | - | chr1_1:27229811-27229830 | Msa0016440:CDS | 50.0% |
| TACCTGAGCTTCCATGGTAC+TGG | + | chr1_1:27229825-27229844 | None:intergenic | 50.0% | |
| !! | CTGTCGTTGGGGCTTTGAAA+GGG | - | chr1_1:27229963-27229982 | Msa0016440:CDS | 50.0% |
| !! | TGTCGTTGGGGCTTTGAAAG+GGG | - | chr1_1:27229964-27229983 | Msa0016440:CDS | 50.0% |
| TGCACCAATGGTTTCCTCAG+AGG | - | chr1_1:27230009-27230028 | Msa0016440:CDS | 50.0% | |
| TGCTGAGAAACTGGGTAGGT+TGG | - | chr1_1:27230517-27230536 | Msa0016440:intron | 50.0% | |
| AAGTGACTTACGCTTCCGCT+AGG | - | chr1_1:27230582-27230601 | Msa0016440:intron | 50.0% | |
| AGTGACTTACGCTTCCGCTA+GGG | - | chr1_1:27230583-27230602 | Msa0016440:intron | 50.0% | |
| CCACGTTAGCAATCTGGACT+TGG | + | chr1_1:27230790-27230809 | None:intergenic | 50.0% | |
| CCAAGTCCAGATTGCTAACG+TGG | - | chr1_1:27230787-27230806 | Msa0016440:CDS | 50.0% | |
| TGCCATATCAGATTCAGGGG+AGG | - | chr1_1:27230826-27230845 | Msa0016440:CDS | 50.0% | |
| GACCTCCCCTGAATCTGATA+TGG | + | chr1_1:27230831-27230850 | None:intergenic | 50.0% | |
| ATCAGATTCAGGGGAGGTCA+CGG | - | chr1_1:27230832-27230851 | Msa0016440:CDS | 50.0% | |
| TGGTGTCCCCCATCTTACAA+AGG | - | chr1_1:27230874-27230893 | Msa0016440:CDS | 50.0% | |
| GTCCCCCATCTTACAAAGGT+TGG | - | chr1_1:27230878-27230897 | Msa0016440:CDS | 50.0% | |
| TGCAGGCAAGTAGATCAACC+AGG | - | chr1_1:27230944-27230963 | Msa0016440:CDS | 50.0% | |
| CCCACCTTTCCAATCATACC+TGG | + | chr1_1:27230965-27230984 | None:intergenic | 50.0% | |
| !! | TGGAAAGGTGGGAAGCATCT+TGG | - | chr1_1:27230973-27230992 | Msa0016440:CDS | 50.0% |
| !! | GGAAAGGTGGGAAGCATCTT+GGG | - | chr1_1:27230974-27230993 | Msa0016440:CDS | 50.0% |
| ATATGTCTGGCTGATGTGCC+CGG | - | chr1_1:27231209-27231228 | Msa0016440:CDS | 50.0% | |
| TTGGGAAGTAGCGTTAGCGG+CGG | + | chr1_1:27228193-27228212 | None:intergenic | 55.0% | |
| TGAAGGGAGACGGAGGGTTT+GGG | + | chr1_1:27228211-27228230 | None:intergenic | 55.0% | |
| AGATGGTGAAGGGAGACGGA+GGG | + | chr1_1:27228217-27228236 | None:intergenic | 55.0% | |
| AAGATGGTGAAGGGAGACGG+AGG | + | chr1_1:27228218-27228237 | None:intergenic | 55.0% | |
| GGGAAGATGGTGAAGGGAGA+CGG | + | chr1_1:27228221-27228240 | None:intergenic | 55.0% | |
| AGACGAAGACGACGAGGGAA+CGG | + | chr1_1:27228311-27228330 | None:intergenic | 55.0% | |
| AGAGGAGACGAAGACGACGA+GGG | + | chr1_1:27228316-27228335 | None:intergenic | 55.0% | |
| AAGAGGAGACGAAGACGACG+AGG | + | chr1_1:27228317-27228336 | None:intergenic | 55.0% | |
| ! | TTTTCAGCGACGAGGACGGT+GGG | + | chr1_1:27228354-27228373 | None:intergenic | 55.0% |
| ! | GAGCTTTTCAGCGACGAGGA+CGG | + | chr1_1:27228358-27228377 | None:intergenic | 55.0% |
| GTCCTCGTCGCTGAAAAGCT+CGG | - | chr1_1:27228357-27228376 | Msa0016440:CDS | 55.0% | |
| GATGCTCTCATCGTTCGCAG+TGG | - | chr1_1:27228474-27228493 | Msa0016440:CDS | 55.0% | |
| GCAACCATGTTCAGTAGCGG+CGG | + | chr1_1:27228592-27228611 | None:intergenic | 55.0% | |
| GCGGCAACAGTGTTAGCAGT+GGG | + | chr1_1:27228630-27228649 | None:intergenic | 55.0% | |
| !! | TCGGTGTCAGACACTCACAC+AGG | + | chr1_1:27229117-27229136 | None:intergenic | 55.0% |
| TGAGGTTGCTAGGCGTGCTA+AGG | - | chr1_1:27229354-27229373 | Msa0016440:intron | 55.0% | |
| GAGGTTGCTAGGCGTGCTAA+GGG | - | chr1_1:27229355-27229374 | Msa0016440:intron | 55.0% | |
| AGGTTGCTAGGCGTGCTAAG+GGG | - | chr1_1:27229356-27229375 | Msa0016440:intron | 55.0% | |
| ! | GCACGATCAGCAGGAGCATA+AGG | + | chr1_1:27229409-27229428 | None:intergenic | 55.0% |
| ! | TCGTGGTGGAGTCATTGACG+AGG | - | chr1_1:27229585-27229604 | Msa0016440:intron | 55.0% |
| TGCCAGTACCATGGAAGCTC+AGG | - | chr1_1:27229820-27229839 | Msa0016440:CDS | 55.0% | |
| !! | GCTGTCGTTGGGGCTTTGAA+AGG | - | chr1_1:27229962-27229981 | Msa0016440:CDS | 55.0% |
| TTGGCTGTCCAACTGGTAGC+AGG | - | chr1_1:27230536-27230555 | Msa0016440:intron | 55.0% | |
| CAACTGGTAGCAGGAGGAAG+CGG | - | chr1_1:27230545-27230564 | Msa0016440:intron | 55.0% | |
| AAGATCATCAGGGGCCCTAG+CGG | + | chr1_1:27230600-27230619 | None:intergenic | 55.0% | |
| TCCACGCAAGCAAGCTGTGA+TGG | - | chr1_1:27231042-27231061 | Msa0016440:CDS | 55.0% | |
| TAGGTGAGTTTAGGGGGACG+AGG | - | chr1_1:27231261-27231280 | Msa0016440:five_prime_UTR | 55.0% | |
| GTGAAGGGAGACGGAGGGTT+TGG | + | chr1_1:27228212-27228231 | None:intergenic | 60.0% | |
| GGAGGAGAGAGGGAGTTTGG+AGG | + | chr1_1:27228253-27228272 | None:intergenic | 60.0% | |
| ! | GGGTTTAGCGTCGAGGGAAG+AGG | + | chr1_1:27228334-27228353 | None:intergenic | 60.0% |
| ! | GACGGTGGGTTTAGCGTCGA+GGG | + | chr1_1:27228340-27228359 | None:intergenic | 60.0% |
| ! | CTTTTCAGCGACGAGGACGG+TGG | + | chr1_1:27228355-27228374 | None:intergenic | 60.0% |
| GCTGAAAAGCTCGGCGAAGC+TGG | - | chr1_1:27228366-27228385 | Msa0016440:CDS | 60.0% | |
| GGCGGCAACAGTGTTAGCAG+TGG | + | chr1_1:27228631-27228650 | None:intergenic | 60.0% | |
| ACTGTTGCCGCCGCTGAACA+CGG | - | chr1_1:27228639-27228658 | Msa0016440:CDS | 60.0% | |
| GATCGCGCTCTTAGCTGGCA+TGG | - | chr1_1:27228662-27228681 | Msa0016440:CDS | 60.0% | |
| ! | GGGTAGGTTGGCTGTCCAAC+TGG | - | chr1_1:27230529-27230548 | Msa0016440:intron | 60.0% |
| GCTGTCCAACTGGTAGCAGG+AGG | - | chr1_1:27230539-27230558 | Msa0016440:intron | 60.0% | |
| CGCTTCCTCCTGCTACCAGT+TGG | + | chr1_1:27230547-27230566 | None:intergenic | 60.0% | |
| AGATTCAGGGGAGGTCACGG+TGG | - | chr1_1:27230835-27230854 | Msa0016440:CDS | 60.0% | |
| GTGGAGGGTCGTGTGAAGGA+TGG | - | chr1_1:27230854-27230873 | Msa0016440:CDS | 60.0% | |
| ! | GCCATCACAGCTTGCTTGCG+TGG | + | chr1_1:27231046-27231065 | None:intergenic | 60.0% |
| GGAAGTAGCGTTAGCGGCGG+CGG | + | chr1_1:27228190-27228209 | None:intergenic | 65.0% | |
| GGCGGAGGAGAGAGGGAGTT+TGG | + | chr1_1:27228256-27228275 | None:intergenic | 65.0% | |
| CGGAGAAGGCGGAGGAGAGA+GGG | + | chr1_1:27228263-27228282 | None:intergenic | 65.0% | |
| ACGGAGAAGGCGGAGGAGAG+AGG | + | chr1_1:27228264-27228283 | None:intergenic | 65.0% | |
| AAGACGACGAGGGAACGGCG+GGG | + | chr1_1:27228306-27228325 | None:intergenic | 65.0% | |
| GAAGACGACGAGGGAACGGC+GGG | + | chr1_1:27228307-27228326 | None:intergenic | 65.0% | |
| CGAAGACGACGAGGGAACGG+CGG | + | chr1_1:27228308-27228327 | None:intergenic | 65.0% | |
| ! | GGACGGTGGGTTTAGCGTCG+AGG | + | chr1_1:27228341-27228360 | None:intergenic | 65.0% |
| ! | CGCCGAGCTTTTCAGCGACG+AGG | + | chr1_1:27228362-27228381 | None:intergenic | 65.0% |
| CTGGCCGCCGCTACTGAACA+TGG | - | chr1_1:27228585-27228604 | Msa0016440:CDS | 65.0% | |
| CTGTTGCCGCCGCTGAACAC+GGG | - | chr1_1:27228640-27228659 | Msa0016440:CDS | 65.0% | |
| GAGCGCGATCCCGTGTTCAG+CGG | + | chr1_1:27228652-27228671 | None:intergenic | 65.0% | |
| CACGGGATCGCGCTCTTAGC+TGG | - | chr1_1:27228657-27228676 | Msa0016440:CDS | 65.0% | |
| GCTAGGCGTGCTAAGGGGCT+TGG | - | chr1_1:27229361-27229380 | Msa0016440:intron | 65.0% | |
| TTCAGGGGAGGTCACGGTGG+AGG | - | chr1_1:27230838-27230857 | Msa0016440:CDS | 65.0% | |
| TCAGGGGAGGTCACGGTGGA+GGG | - | chr1_1:27230839-27230858 | Msa0016440:CDS | 65.0% | |
| CACGGTGGAGGGTCGTGTGA+AGG | - | chr1_1:27230850-27230869 | Msa0016440:CDS | 65.0% | |
| AGTAGCGTTAGCGGCGGCGG+CGG | + | chr1_1:27228187-27228206 | None:intergenic | 70.0% | |
| GAGGGAGACGGAGAAGGCGG+AGG | + | chr1_1:27228271-27228290 | None:intergenic | 70.0% | |
| GCGGAGGGAGACGGAGAAGG+CGG | + | chr1_1:27228274-27228293 | None:intergenic | 70.0% | |
| GTTGTGGGGGCGGAGGGAGA+CGG | + | chr1_1:27228283-27228302 | None:intergenic | 70.0% | |
| AGGGAACGGCGGGGGTTGTG+GGG | + | chr1_1:27228297-27228316 | None:intergenic | 70.0% | |
| GAGGGAACGGCGGGGGTTGT+GGG | + | chr1_1:27228298-27228317 | None:intergenic | 70.0% | |
| AGACGACGAGGGAACGGCGG+GGG | + | chr1_1:27228305-27228324 | None:intergenic | 70.0% | |
| CGCGATCCCGTGTTCAGCGG+CGG | + | chr1_1:27228649-27228668 | None:intergenic | 70.0% | |
| GGGGCGGAGGGAGACGGAGA+AGG | + | chr1_1:27228277-27228296 | None:intergenic | 75.0% | |
| AACGGCGGGGGTTGTGGGGG+CGG | + | chr1_1:27228293-27228312 | None:intergenic | 75.0% | |
| GGGAACGGCGGGGGTTGTGG+GGG | + | chr1_1:27228296-27228315 | None:intergenic | 75.0% | |
| CGAGGGAACGGCGGGGGTTG+TGG | + | chr1_1:27228299-27228318 | None:intergenic | 75.0% | |
| ! | AGCGTTAGCGGCGGCGGCGG+CGG | + | chr1_1:27228184-27228203 | None:intergenic | 80.0% |
| ! | GCGGGGGTTGTGGGGGCGGA+GGG | + | chr1_1:27228289-27228308 | None:intergenic | 80.0% |
| ! | GTTAGCGGCGGCGGCGGCGG+CGG | + | chr1_1:27228181-27228200 | None:intergenic | 85.0% |
| ! | GGCGGGGGTTGTGGGGGCGG+AGG | + | chr1_1:27228290-27228309 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27228027 | 27231403 | 27228027 | ID=Msa0016440;Name=Msa0016440 |
| chr1_1 | mRNA | 27228027 | 27231403 | 27228027 | ID=Msa0016440-mRNA-1;Parent=Msa0016440;Name=Msa0016440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=147|1|1|1|1|1|5|247|601 |
| chr1_1 | exon | 27228027 | 27228945 | 27228027 | ID=Msa0016440-mRNA-1:exon:9196;Parent=Msa0016440-mRNA-1 |
| chr1_1 | exon | 27229400 | 27229495 | 27229400 | ID=Msa0016440-mRNA-1:exon:9195;Parent=Msa0016440-mRNA-1 |
| chr1_1 | exon | 27229589 | 27229699 | 27229589 | ID=Msa0016440-mRNA-1:exon:9194;Parent=Msa0016440-mRNA-1 |
| chr1_1 | exon | 27229782 | 27230158 | 27229782 | ID=Msa0016440-mRNA-1:exon:9193;Parent=Msa0016440-mRNA-1 |
| chr1_1 | exon | 27230707 | 27231403 | 27230707 | ID=Msa0016440-mRNA-1:exon:9192;Parent=Msa0016440-mRNA-1 |
| chr1_1 | five_prime_UTR | 27231257 | 27231403 | 27231257 | ID=Msa0016440-mRNA-1:five_prime_utr;Parent=Msa0016440-mRNA-1 |
| chr1_1 | CDS | 27230707 | 27231256 | 27230707 | ID=Msa0016440-mRNA-1:cds;Parent=Msa0016440-mRNA-1 |
| chr1_1 | CDS | 27229782 | 27230158 | 27229782 | ID=Msa0016440-mRNA-1:cds;Parent=Msa0016440-mRNA-1 |
| chr1_1 | CDS | 27229589 | 27229699 | 27229589 | ID=Msa0016440-mRNA-1:cds;Parent=Msa0016440-mRNA-1 |
| chr1_1 | CDS | 27229400 | 27229495 | 27229400 | ID=Msa0016440-mRNA-1:cds;Parent=Msa0016440-mRNA-1 |
| chr1_1 | CDS | 27228274 | 27228945 | 27228274 | ID=Msa0016440-mRNA-1:cds;Parent=Msa0016440-mRNA-1 |
| chr1_1 | three_prime_UTR | 27228027 | 27228273 | 27228027 | ID=Msa0016440-mRNA-1:three_prime_utr;Parent=Msa0016440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
