AlfalfaGEDB | Msa0568490

M. sativa cultivar zhongmu-4 / Msa0568490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF12899.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0568490	XP_003630134.1	98.605	645	8	1	1	644	1	645	0.0	1321

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0568490	sp\|Q9FK88\|INVE_ARATH	69.337	649	160	7	3	644	1	617	0.0	904

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0568490	G7LBD0	98.605	645	8	1	1	644	1	645	0.0	1321

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0568490	0.830832	2.352104e-55	-8.615850e-47
Msa0001460	Msa0568490	0.826265	2.981962e-54	-8.615850e-47
Msa0002060	Msa0568490	0.801455	8.930182e-49	-8.615850e-47
Msa0005160	Msa0568490	0.827025	1.964557e-54	-8.615850e-47
Msa0005690	Msa0568490	0.837712	4.420508e-57	-8.615850e-47
Msa0006700	Msa0568490	0.821457	3.996334e-53	-8.615850e-47
Msa0006820	Msa0568490	0.825457	4.639044e-54	-8.615850e-47
Msa0007160	Msa0568490	0.804740	1.868779e-49	-8.615850e-47
Msa0008330	Msa0568490	0.820621	6.226482e-53	-8.615850e-47
Msa0008700	Msa0568490	0.805701	1.175347e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0568490	MtrunA17_Chr8g0383361	98.605	645	8	1	1	644	1	645	0.0	1321
Msa0568490	MtrunA17_Chr1g0192991	73.362	473	122	2	164	636	113	581	0.0	761
Msa0568490	MtrunA17_Chr4g0068901	67.969	512	159	2	129	635	147	658	0.0	758
Msa0568490	MtrunA17_Chr7g0271621	60.653	582	210	7	67	644	80	646	0.0	733
Msa0568490	MtrunA17_Chr1g0200341	56.933	476	199	2	146	620	73	543	0.0	585
Msa0568490	MtrunA17_Chr3g0145461	55.852	487	209	2	134	620	81	561	0.0	583
Msa0568490	MtrunA17_Chr1g0200331	58.515	458	184	2	164	620	89	541	0.0	579
Msa0568490	MtrunA17_Chr4g0038561	56.236	457	194	2	164	620	51	501	0.0	550
Msa0568490	MtrunA17_Chr3g0082721	71.515	165	47	0	359	523	2	166	1.20e-86	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0568490	AT5G22510.2	69.337	649	160	7	3	644	1	617	904
Msa0568490	AT5G22510.1	69.337	649	160	7	3	644	1	617	904
Msa0568490	AT1G56560.1	74.348	460	116	1	162	621	132	589	767
Msa0568490	AT3G06500.1	67.433	522	160	3	125	637	134	654	763
Msa0568490	AT3G05820.2	68.031	513	159	3	125	635	112	621	754
Msa0568490	AT3G06500.2	71.638	409	115	1	229	637	48	455	652
Msa0568490	AT3G05820.1	71.072	401	111	3	125	523	112	509	614
Msa0568490	AT4G09510.1	59.737	457	179	1	164	620	95	546	604
Msa0568490	AT1G35580.2	60.573	454	174	1	164	617	87	535	601
Msa0568490	AT1G35580.1	60.573	454	174	1	164	617	87	535	601

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Find 167 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCATGCTAAATATAT+AGG	0.338757	4_1:-70092090	Msa0568490:three_prime_UTR
AAACATACTGATAACTGAAG+AGG	0.547667	4_1:-70092288	Msa0568490:CDS
AAATATGATGTCAATACTTG+AGG	0.529817	4_1:-70092012	Msa0568490:three_prime_UTR
AACAAAGGAGGCTACTTAAT+TGG	0.324104	4_1:-70093152	Msa0568490:CDS
AACAGGAGCAACACGGCCAA+TGG	0.563132	4_1:+70095514	None:intergenic
AACATGTGATCTCAGGGCTG+TGG	0.624246	4_1:-70095398	Msa0568490:intron
AACCAAGGAGAAATCTGGTC+TGG	0.425338	4_1:+70093191	None:intergenic
AACCAGCTCACATGGATTTC+CGG	0.330359	4_1:-70093121	Msa0568490:CDS
AACCGGAAATCCATGTGAGC+TGG	0.541172	4_1:+70093119	None:intergenic
AACTGGGAAGTGTTGACAAA+AGG	0.497494	4_1:+70097086	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCATTGTCTTCTTATCT+TGG	+	chr4_1:70091797-70091816	None:intergenic	30.0%
ATCTAAATTAACTCTACAGG+AGG	-	chr4_1:70092307-70092326	Msa0568490:CDS	30.0%
ATATGAAGAAAAGATCCTCA+AGG	-	chr4_1:70092476-70092495	Msa0568490:CDS	30.0%
TATTAAAAACCTATGCCTTG+AGG	+	chr4_1:70092494-70092513	None:intergenic	30.0%
TGATGTTGAAAAATCTAGTC+TGG	-	chr4_1:70092690-70092709	Msa0568490:intron	30.0%
TTGTCATCCAATGTTACAAA+TGG	-	chr4_1:70092787-70092806	Msa0568490:intron	30.0%
TGTCATCCAATGTTACAAAT+GGG	-	chr4_1:70092788-70092807	Msa0568490:intron	30.0%
GAGTCTGTAGTTAATTATTG+TGG	-	chr4_1:70092880-70092899	Msa0568490:intron	30.0%
AATTATTGTGGGAATCCTAT+TGG	-	chr4_1:70092892-70092911	Msa0568490:intron	30.0%
TTCAAAACATTGGTACTGTT+TGG	+	chr4_1:70092937-70092956	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	70091779	70097771	70091779	ID=Msa0568490;Name=Msa0568490
chr4_1	mRNA	70091779	70097771	70091779	ID=Msa0568490-mRNA-1;Parent=Msa0568490;Name=Msa0568490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=240\|1\|1\|1\|0.83\|0.71\|7\|423\|644
chr4_1	exon	70091779	70092519	70091779	ID=Msa0568490-mRNA-1:exon:23602;Parent=Msa0568490-mRNA-1
chr4_1	exon	70092802	70092850	70092802	ID=Msa0568490-mRNA-1:exon:23601;Parent=Msa0568490-mRNA-1
chr4_1	exon	70092933	70093426	70092933	ID=Msa0568490-mRNA-1:exon:23600;Parent=Msa0568490-mRNA-1
chr4_1	exon	70095194	70095405	70095194	ID=Msa0568490-mRNA-1:exon:23599;Parent=Msa0568490-mRNA-1
chr4_1	exon	70095507	70095672	70095507	ID=Msa0568490-mRNA-1:exon:23598;Parent=Msa0568490-mRNA-1
chr4_1	exon	70096485	70097224	70096485	ID=Msa0568490-mRNA-1:exon:23597;Parent=Msa0568490-mRNA-1
chr4_1	exon	70097576	70097771	70097576	ID=Msa0568490-mRNA-1:exon:23596;Parent=Msa0568490-mRNA-1
chr4_1	five_prime_UTR	70097576	70097771	70097576	ID=Msa0568490-mRNA-1:five_prime_utr;Parent=Msa0568490-mRNA-1
chr4_1	five_prime_UTR	70097181	70097224	70097181	ID=Msa0568490-mRNA-1:five_prime_utr;Parent=Msa0568490-mRNA-1
chr4_1	CDS	70096485	70097180	70096485	ID=Msa0568490-mRNA-1:cds;Parent=Msa0568490-mRNA-1
chr4_1	CDS	70095507	70095672	70095507	ID=Msa0568490-mRNA-1:cds;Parent=Msa0568490-mRNA-1
chr4_1	CDS	70095194	70095405	70095194	ID=Msa0568490-mRNA-1:cds;Parent=Msa0568490-mRNA-1
chr4_1	CDS	70092933	70093426	70092933	ID=Msa0568490-mRNA-1:cds;Parent=Msa0568490-mRNA-1
chr4_1	CDS	70092802	70092850	70092802	ID=Msa0568490-mRNA-1:cds;Parent=Msa0568490-mRNA-1
chr4_1	CDS	70092202	70092519	70092202	ID=Msa0568490-mRNA-1:cds;Parent=Msa0568490-mRNA-1
chr4_1	three_prime_UTR	70091779	70092201	70091779	ID=Msa0568490-mRNA-1:three_prime_utr;Parent=Msa0568490-mRNA-1

Gene Sequence

>Msa0568490

ATGTCTTTAGGTGCTTCCAAAGCCGTTTTTCAGGTTCTGTCCAGTGTTGTTCCTCAATCCGCGTATAATGAGCCTTTTGTCAACACTTCCCAGTTGCGAACAAAATATATGAAGAAAAGATCCTCAAGGCATAGGTTTTTAATAGAGAGCTCTAGCATGCTTCAAAGCCAGTTAAGGCCTCATCGATTTCCATTGACCAGTGTCAGTTTCTGTGACTATAAGACCTATAGTCATCCATGGTTGCAAACATGTAAATGCCAAAAGGCTGAAAATGTGAGCGGCATAACTTCAGGAGACGGTAATGGATCAAGGTTTGCGAGTGATGTTGAAAAATCTAGTCTGGTAAGCAATGTGATGAGTGCAAAGTCTTCTTTAGAGTTTGAAGATGTTCAACTGTTGGAACAGGAAAAAGAGGTTTTGTCATCCAATGTTACAAATGGGACTGCCACGAAAAATCTTGGTACAATTAGCCTCAACTCTATTGAGGAAGAAGCGTGGGATCTACTGAGGGAGTCTGTAGTTAATTATTGTGGGAATCCTATTGGAACTATTGCTGCAAAGGATCCAAACAGTACCAATGTTTTGAATTATGACCAAGTCTTTATTCGTGATTTTATTCCATCTGGAGTCGCTTTCCTATTGAAGGGAGAGTATGATATTGTTCGTAATTTCATTCTTCATACACTTCAGCTGCAGAGCTGGGAGAAAACAATGGATTGTCATAGTCCAGGACAAGGTTTGATGCCTGCTAGTTTTAAGGTTCGGACAGTTCCTCTGGAAGGTGATGACTCTGCAACAGAAGAGGTTTTGGATCCTGACTTTGGAGAGGCAGCCATTGGCCGTGTTGCTCCTGTTGATTCCGGGCTGTGGTGGATTATTTTACTACGAGCATATGGAAAATGCTCTGGGGATTTATCTGTTCAGGAGAGAGTTGATGTGCAAACAGGAATTAAGATGATTTTGAAGCTTTGTCTTGCTGATGGTTTTGACATGTTCCCAACATTATTAGTAACTGATGGTTCTTGCATGATAGATCGAAGGATGGGCATACACGGGCATCCTTTGGAGATTCAGGCACTGTTTTATTCTGCCTTACGTTGTGCACGTGAGATGCTTACTCCTGAGGATGGATCAGCTGATCTTATACGGGCACTGAACAATCGGCTGGTCGCTCTCTCATTTCATATTAGAGAATATTATTGGATCGATATGAAAAGATTAAATGAAATTTACCGTTACAAGACAGAGGAGTACTCATATGATGCAGTTAATAAATTCAACATATACCCAGACCAGATTTCTCCTTGGTTAGTGGAGTGGATGCCGAACAAAGGAGGCTACTTAATTGGTAACTTACAACCAGCTCACATGGATTTCCGGTTTTTTTCACTAGGAAACTTGTGGTCTGTTGTCAGTAGTATGGCCACAGAGGAACAATCACATGCCATATTGGATCTTATTGAGGCCAAATGGTCGGATTTGGTGGCAGATATGCCACTCAAGATTTGTTATCCGGCTCTTGAAGGTCAGGAGTGGCAGATAATCACTGGCAGTGATCCTAAGAACACGCCTTGGTCTTACCATAATGGAGGCTCCTGGCCATCACTTCTCTGGCAGCTCACAGCTGCATGCATAAAGATGAACAGACCACATATTGCTGCAAAAGCTGTTGAAATTGTTGAGAGACGTATATCAAGAGACAAGTGGCCAGAATATTATGACACGAAAAGATCTCGATTCATTGGAAAACAGTCTCAGTTGTTTCAGACATGGTCAATTGCGGGATACCTTGTGTCAAAGCTGCTGCTTGCAGACCCAAGTAAAGCAAACATACTGATAACTGAAGAGGATTCTGATCTTGTGATTGCTTTGATTAATGCCAACCCAAAAGGAAAGCGCGGGAGGAAAAATTTGAAGCAGACCTACATTGTATGA

Protein sequence

>Msa0568490

MSLGASKAVFQVLSSVVPQSAYNEPFVNTSQLRTKYMKKRSSRHRFLIESSSMLQSQLRPHRFPLTSVSFCDYKTYSHPWLQTCKCQKAENVSGITSGDGNGSRFASDVEKSSLVSNVMSAKSSLEFEDVQLLEQEKEVLSSNVTNGTATKNLGTISLNSIEEEAWDLLRESVVNYCGNPIGTIAAKDPNSTNVLNYDQVFIRDFIPSGVAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLEGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREMLTPEDGSADLIRALNNRLVALSFHIREYYWIDMKRLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNLWSVVSSMATEEQSHAILDLIEAKWSDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNGGSWPSLLWQLTAACIKMNRPHIAAKAVEIVERRISRDKWPEYYDTKRSRFIGKQSQLFQTWSIAGYLVSKLLLADPSKANILITEEDSDLVIALINANPKGKRGRKNLKQTYIV*