AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007980 MtrunA17_Chr7g0218341 99.297 711 4 1 1 711 1 710 0.0 1457
Msa1007980 MtrunA17_Chr8g0360821 51.876 613 273 9 110 708 63 667 0.0 661
Msa1007980 MtrunA17_Chr2g0318561 51.822 494 220 7 228 708 2 490 0.0 533
Msa1007980 MtrunA17_Chr4g0073941 39.442 573 326 10 108 673 98 656 6.97e-131 404
Msa1007980 MtrunA17_Chr2g0305771 38.176 592 339 10 108 687 42 618 1.24e-129 399
Msa1007980 MtrunA17_Chr1g0158861 36.102 590 351 13 94 676 69 639 6.73e-129 398
Msa1007980 MtrunA17_Chr3g0139071 37.778 585 349 8 108 686 72 647 9.04e-128 396
Msa1007980 MtrunA17_Chr3g0126541 36.014 572 345 8 107 673 79 634 3.45e-125 389
Msa1007980 MtrunA17_Chr7g0228181 36.395 577 347 10 108 676 43 607 4.37e-120 374
Msa1007980 MtrunA17_Chr1g0181121 35.897 585 352 9 109 687 44 611 1.33e-119 373
Msa1007980 MtrunA17_Chr4g0001481 36.457 587 347 11 102 673 86 661 4.35e-119 374
Msa1007980 MtrunA17_Chr4g0028861 35.172 580 349 12 108 679 123 683 4.65e-118 369
Msa1007980 MtrunA17_Chr2g0326871 34.347 658 396 18 41 687 12 644 6.77e-118 369
Msa1007980 MtrunA17_Chr3g0125651 36.256 593 357 9 91 676 21 599 6.67e-117 366
Msa1007980 MtrunA17_Chr7g0275581 34.375 608 368 12 80 673 50 640 1.67e-110 350
Msa1007980 MtrunA17_Chr8g0347121 32.268 626 368 13 91 676 44 653 3.07e-102 329
Msa1007980 MtrunA17_Chr6g0481021 35.714 588 350 13 109 681 123 697 2.96e-100 323
Msa1007980 MtrunA17_Chr6g0480851 34.797 592 353 10 109 686 184 756 3.50e-98 319
Msa1007980 MtrunA17_Chr6g0480671 35.385 585 341 11 108 676 192 755 5.17e-97 316
Msa1007980 MtrunA17_Chr6g0480781 30.698 645 382 14 71 676 113 731 1.20e-94 310
Msa1007980 MtrunA17_Chr6g0480741 30.034 586 372 13 108 678 114 676 1.39e-76 259
Msa1007980 MtrunA17_Chr6g0480681 29.338 634 364 20 109 692 115 714 1.88e-69 241
Msa1007980 MtrunA17_Chr5g0395421 33.520 358 204 8 311 654 18 355 1.26e-44 164
Msa1007980 MtrunA17_Chr6g0480771 33.600 250 146 6 438 675 12 253 2.07e-30 121
Msa1007980 MtrunA17_Chr5g0395411 32.843 204 120 4 109 312 172 358 1.17e-28 118
Msa1007980 MtrunA17_Chr2g0326861 36.691 139 85 2 185 323 14 149 4.24e-24 101
Msa1007980 MtrunA17_Chr6g0480841 33.668 199 112 6 490 675 1 192 2.59e-21 93.2
Msa1007980 MtrunA17_Chr2g0318551 38.400 125 68 3 109 232 63 179 3.53e-20 89.7
Msa1007980 MtrunA17_Chr6g0480791 31.694 183 103 5 71 234 116 295 8.77e-20 90.5
Msa1007980 MtrunA17_Chr6g0480751 30.201 149 101 2 94 242 83 228 7.85e-18 83.6
Msa1007980 MtrunA17_Chr6g0480821 29.448 163 79 7 252 401 49 188 2.71e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007980 AT5G15410.2 78.477 683 132 7 42 711 45 725 0.0 1042
Msa1007980 AT5G15410.1 78.477 683 132 7 42 711 46 726 0.0 1040
Msa1007980 AT5G54250.2 50.394 635 287 10 92 707 62 687 0.0 643
Msa1007980 AT5G54250.1 50.394 635 287 10 92 707 62 687 0.0 643
Msa1007980 AT5G54250.4 50.394 635 287 10 92 707 62 687 0.0 643
Msa1007980 AT5G54250.3 49.764 635 286 11 92 707 62 682 0.0 629
Msa1007980 AT2G24610.1 37.422 644 379 13 42 676 6 634 3.21e-131 405
Msa1007980 AT2G24610.2 37.821 624 367 12 59 676 41 649 9.90e-131 404
Msa1007980 AT1G15990.1 36.581 585 337 9 108 676 89 655 1.31e-128 399
Msa1007980 AT2G23980.6 37.069 580 344 9 108 678 75 642 3.61e-128 397
Msa1007980 AT4G30560.5 36.915 577 348 8 108 678 76 642 6.80e-128 396
Msa1007980 AT4G30560.2 36.915 577 348 8 108 678 76 642 6.80e-128 396
Msa1007980 AT4G30560.3 36.915 577 348 8 108 678 76 642 6.80e-128 396
Msa1007980 AT2G23980.9 37.069 580 344 9 108 678 102 669 7.04e-128 397
Msa1007980 AT2G23980.10 37.069 580 344 9 108 678 102 669 7.04e-128 397
Msa1007980 AT2G23980.1 37.069 580 344 9 108 678 102 669 7.04e-128 397
Msa1007980 AT2G23980.4 37.069 580 344 9 108 678 102 669 7.04e-128 397
Msa1007980 AT2G23980.5 37.069 580 344 9 108 678 102 669 7.04e-128 397
Msa1007980 AT4G30560.1 36.915 577 348 8 108 678 102 668 1.51e-127 396
Msa1007980 AT4G30560.4 36.915 577 348 8 108 678 102 668 1.51e-127 396
Msa1007980 AT1G19780.1 36.581 585 336 10 108 676 96 661 2.56e-127 396
Msa1007980 AT1G01340.1 36.824 573 345 7 108 676 62 621 2.85e-127 394
Msa1007980 AT1G01340.2 36.824 573 345 7 108 676 67 626 5.41e-127 394
Msa1007980 AT5G53130.1 35.174 634 386 12 47 673 21 636 3.10e-126 392
Msa1007980 AT5G57940.3 36.364 583 343 10 108 678 80 646 1.01e-124 388
Msa1007980 AT5G57940.1 36.364 583 343 10 108 678 87 653 1.04e-124 388
Msa1007980 AT5G57940.2 36.364 583 343 10 108 678 87 653 1.04e-124 388
Msa1007980 AT4G30360.1 37.456 574 343 10 109 676 71 634 1.55e-124 387
Msa1007980 AT2G28260.2 36.106 601 347 12 92 676 5 584 4.36e-124 384
Msa1007980 AT5G14870.1 35.993 589 358 8 108 689 39 615 5.29e-124 385
Msa1007980 AT2G28260.1 36.106 601 347 12 92 676 45 624 2.39e-123 383
Msa1007980 AT2G23980.3 35.821 603 343 10 108 678 102 692 4.52e-123 385
Msa1007980 AT2G23980.2 35.821 603 343 10 108 678 102 692 4.52e-123 385
Msa1007980 AT2G23980.8 35.821 603 343 10 108 678 102 692 4.52e-123 385
Msa1007980 AT2G23980.7 35.821 603 343 10 108 678 102 692 4.52e-123 385
Msa1007980 AT4G01010.1 34.790 618 365 12 108 703 67 668 7.43e-122 380
Msa1007980 AT4G01010.2 34.790 618 365 12 108 703 67 668 7.43e-122 380
Msa1007980 AT3G48010.1 37.306 579 342 8 108 676 43 610 3.91e-121 378
Msa1007980 AT2G46430.1 34.843 574 353 10 108 676 71 628 3.19e-110 350
Msa1007980 AT2G46430.2 34.843 574 353 10 108 676 71 628 3.19e-110 350
Msa1007980 AT3G17690.1 34.732 596 351 14 93 676 146 715 2.28e-103 332
Msa1007980 AT1G19780.2 37.358 439 250 6 251 676 24 450 1.23e-99 317
Msa1007980 AT3G17700.1 34.448 598 340 14 93 670 180 745 1.53e-98 320
Msa1007980 AT3G17690.2 35.352 512 302 11 93 600 146 632 1.53e-93 304
Msa1007980 AT3G17700.2 34.924 524 299 12 93 606 180 671 1.87e-89 294
Msa1007980 AT2G46450.4 31.308 642 386 17 87 703 1 612 8.93e-89 291
Msa1007980 AT2G46450.1 31.308 642 386 17 87 703 1 612 8.93e-89 291
Msa1007980 AT2G46450.2 30.841 642 366 19 87 703 1 589 1.88e-81 271
Msa1007980 AT2G46450.3 30.583 618 361 17 104 703 9 576 1.42e-80 269
Msa1007980 AT2G46440.1 31.336 584 371 12 104 676 22 586 4.84e-78 262
Msa1007980 AT3G17690.3 34.103 390 235 8 93 479 146 516 1.36e-64 223
Msa1007980 AT2G46440.2 33.333 396 249 7 287 676 22 408 1.53e-60 210
Msa1007980 AT4G22200.2 25.322 233 168 4 371 601 242 470 4.45e-13 73.2
Msa1007980 AT4G22200.1 25.322 233 168 4 371 601 242 470 6.87e-13 72.8

Find 215 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTCTCTTATCAATTT+TGG 0.079415 7_1:+7871509 None:intergenic
ACTAATTCTTGCAGCACTTT+TGG 0.238112 7_1:-7870308 Msa1007980:intron
TATTGGATGCAATCTTTCTT+TGG 0.239216 7_1:-7870926 Msa1007980:CDS
GGCACCATTTGGTGGGGATT+TGG 0.246313 7_1:-7871371 Msa1007980:CDS
TTGCTTGGACCTCATTAAAA+AGG 0.257699 7_1:-7869610 Msa1007980:intron
AAAGAGAGAAATAGTGATTC+AGG 0.258928 7_1:-7868402 Msa1007980:three_prime_UTR
TTGCCTAAAACTCCCCAATT+TGG 0.262276 7_1:+7873801 None:intergenic
GGTAAACCTTAGGGAGAAAT+TGG 0.263094 7_1:+7871444 None:intergenic
GCCGAACTCTTTGTCTTAAT+CGG 0.269123 7_1:+7869733 None:intergenic
CACTCCACCATGCTGATTAC+TGG 0.271370 7_1:+7873972 None:intergenic
GGTACATAACCGATCATTTC+CGG 0.275557 7_1:-7868957 Msa1007980:CDS
GCTGGAAGCCGGTCGATAAA+AGG 0.276163 7_1:+7869045 None:intergenic
GTTGACGGACCGTACAAATA+TGG 0.279588 7_1:-7870799 Msa1007980:CDS
AATTGCACGCGCTTGCTTCT+TGG 0.279881 7_1:+7873768 None:intergenic
AAGTACAAGGCAGCCTTAAA+AGG 0.285103 7_1:+7868325 None:intergenic
GTGCCTCCATTATCCCTTAC+AGG 0.286550 7_1:+7868805 None:intergenic
TAGAGTGGATGCTAGTGTTT+TGG 0.289851 7_1:+7874939 None:intergenic
GAGCAGTATCAAAGCCAAAT+TGG 0.306208 7_1:-7873815 Msa1007980:CDS
GTGGATTGGTGGAAAATTCT+TGG 0.308729 7_1:-7874075 Msa1007980:CDS
TGCTATAATTTATAGGTTGC+TGG 0.318815 7_1:-7871015 Msa1007980:intron
TAGGCGACGAACTACTTTCT+TGG 0.337638 7_1:-7869080 Msa1007980:CDS
CCGGCGGACGCTTCCCATTC+GGG 0.347149 7_1:+7873882 None:intergenic
CTGCAATGTTCATGTCAATT+AGG 0.348025 7_1:-7868759 Msa1007980:CDS
CAATGCCTTTGCTTAGACTT+TGG 0.354479 7_1:+7869136 None:intergenic
CAGCAGTGTGAAAGAACTAT+TGG 0.359069 7_1:-7870943 Msa1007980:CDS
CGGTGCATTTGTTTCATGTT+TGG 0.361294 7_1:-7873590 Msa1007980:CDS
CCGCAAAATGCAGAAATATA+TGG 0.362644 7_1:+7868637 None:intergenic
GGATTTCCAATCGTTCCTTC+TGG 0.367798 7_1:+7870868 None:intergenic
GTGACTCCTGTAAGGGATAA+TGG 0.371039 7_1:-7868811 Msa1007980:CDS
AAAGTCACAGGCTACATCTT+TGG 0.371386 7_1:-7871392 Msa1007980:CDS
ATCCAACCGCGCGTTGTTGT+TGG 0.373879 7_1:-7873745 Msa1007980:CDS
AGCAGTATCAAAGCCAAATT+GGG 0.374364 7_1:-7873814 Msa1007980:CDS
TGAAAGAGAGAGTGAGTGAG+AGG 0.378125 7_1:+7874757 None:intergenic
CTTGACAGCCAAGGAATTGC+TGG 0.385081 7_1:+7870747 None:intergenic
GTCTTGATGCTCAAAACTTA+AGG 0.386358 7_1:-7868978 Msa1007980:CDS
AACTTGCTTATAGACGTTAC+AGG 0.387453 7_1:-7868852 Msa1007980:CDS
GATATGCTATGGTAAACCTT+AGG 0.389660 7_1:+7871434 None:intergenic
TTCTTTCACACTGCTGTTGA+AGG 0.390085 7_1:+7870950 None:intergenic
ATCTTGAACCCACAAGTAAC+TGG 0.395487 7_1:-7870280 Msa1007980:CDS
CGAGATACTACTCGTCGAAT+TGG 0.400059 7_1:-7868900 Msa1007980:CDS
TGTTATTCTTCCTGTTCCTC+AGG 0.400526 7_1:-7873439 Msa1007980:intron
GCTACATCTTTGGCACCATT+TGG 0.400815 7_1:-7871382 Msa1007980:CDS
TTGGTGAAGTGAATTGAAAC+TGG 0.402357 7_1:+7874906 None:intergenic
CGCGCGTTGTTGTTGGCGCG+TGG 0.414532 7_1:-7873738 Msa1007980:CDS
GGTACCATTGTTTCACAACT+TGG 0.414666 7_1:-7869412 Msa1007980:CDS
GAGAGAGAGTGTTGTGTTGT+GGG 0.417203 7_1:+7874965 None:intergenic
CATTTCATCTTCTCCTCCCA+TGG 0.417470 7_1:+7869686 None:intergenic
CATCAAGCGCCACCTTTGCT+TGG 0.417719 7_1:-7869625 Msa1007980:CDS
AGGGTCGCCGTGTTTGTATA+TGG 0.421162 7_1:-7873661 Msa1007980:CDS
TTTGTTTGCAGGTTGTGTTT+TGG 0.426454 7_1:-7871541 Msa1007980:intron
AGAGAGTGAGTGAGAGGGTA+GGG 0.426885 7_1:+7874763 None:intergenic
AAGACTTACCTGAGGGTTTG+AGG 0.427919 7_1:-7869653 Msa1007980:CDS
TGGTTTAGCGGCGGTTGTTA+CGG 0.428496 7_1:-7873634 Msa1007980:CDS
TGTCATATCCAGCAATTCCT+TGG 0.429530 7_1:-7870755 Msa1007980:CDS
GTGACAACTGTCTGCACAGC+TGG 0.429618 7_1:+7873908 None:intergenic
AAATTTCATACCTGAGGAAC+AGG 0.430018 7_1:+7873429 None:intergenic
CTCGAACCAGGAGGTTTCTT+AGG 0.431143 7_1:-7869099 Msa1007980:CDS
ACAAATGTGGCTGAGGAAGC+TGG 0.432884 7_1:+7869027 None:intergenic
TTTGTTCCAATTTCTCCCTA+AGG 0.438542 7_1:-7871450 Msa1007980:CDS
CATCTTTGGCACCATTTGGT+GGG 0.442499 7_1:-7871378 Msa1007980:CDS
AAAATAAATAAAACCAATCA+TGG 0.445625 7_1:+7868547 None:intergenic
CCGAACTCTTTGTCTTAATC+GGG 0.446653 7_1:+7869734 None:intergenic
ACGGCAGAGATGGGCGGCCA+TGG 0.448118 7_1:-7869703 Msa1007980:CDS
ACATCTTTGGCACCATTTGG+TGG 0.449923 7_1:-7871379 Msa1007980:CDS
GATAAACTTGTGTCCATGAT+TGG 0.450306 7_1:-7868560 Msa1007980:three_prime_UTR
ACTTATTGAATAAATAATGA+AGG 0.451409 7_1:-7868306 Msa1007980:three_prime_UTR
TTTGATTCATCACTCTCTCA+TGG 0.451748 7_1:-7874716 Msa1007980:five_prime_UTR
GAATCACTTGTTGTTGGATG+TGG 0.452041 7_1:-7873537 Msa1007980:CDS
CGGCAGAGATGGGCGGCCAT+GGG 0.452732 7_1:-7869702 Msa1007980:CDS
GAGGTCCGGTGACTCCTGTA+AGG 0.454750 7_1:-7868819 Msa1007980:CDS
TGGATTGGTGGAAAATTCTT+GGG 0.458229 7_1:-7874074 Msa1007980:CDS
TTCTTGACAACATCTGTGAC+AGG 0.460022 7_1:-7869380 Msa1007980:CDS
TTGACGGACCGTACAAATAT+GGG 0.461139 7_1:-7870798 Msa1007980:CDS
CACTTCTAGCCAGTTACTTG+TGG 0.461652 7_1:+7870271 None:intergenic
GCGCGTTGTTGTTGGCGCGT+GGG 0.462346 7_1:-7873737 Msa1007980:CDS
CTTGAATCAACTGAAGCATT+CGG 0.467071 7_1:-7869000 Msa1007980:CDS
GAGAGAGGAGAAGGTGGGCA+TGG 0.467830 7_1:+7874673 None:intergenic
CAAATATGGGATTTACCAAT+GGG 0.468155 7_1:-7870785 Msa1007980:CDS
TCATCTCGAGAGAAGACTAA+AGG 0.472290 7_1:+7869351 None:intergenic
GATTGGAACTAGATAGGAAC+CGG 0.475356 7_1:+7873863 None:intergenic
ATCTTTGGCACCATTTGGTG+GGG 0.476964 7_1:-7871377 Msa1007980:CDS
AGTCTTCTCTCGAGATGAAA+AGG 0.477345 7_1:-7869346 Msa1007980:intron
TAACAATTTCAAAGGTCTGA+AGG 0.477905 7_1:+7868462 None:intergenic
ACTTCTAGCCAGTTACTTGT+GGG 0.480880 7_1:+7870272 None:intergenic
CTTATAGACGTTACAGGCAG+AGG 0.484790 7_1:-7868846 Msa1007980:CDS
AATATAAATGTATAAGATGA+TGG 0.484989 7_1:+7874846 None:intergenic
TTTGGGGTTTGATGACCCTC+AGG 0.486459 7_1:-7870708 Msa1007980:intron
ATATGCTATGGTAAACCTTA+GGG 0.486563 7_1:+7871435 None:intergenic
AGCATATGCATTGTACTCGC+TGG 0.487171 7_1:-7870242 Msa1007980:CDS
CGAACAATGAACACCATCCT+TGG 0.487181 7_1:+7869177 None:intergenic
CATGGGAGGAGAAGATGAAA+TGG 0.491871 7_1:-7869685 Msa1007980:CDS
CGCGTTGTTGTTGGCGCGTG+GGG 0.494097 7_1:-7873736 Msa1007980:CDS
GGTTGTTACGGTGGCGCGTA+CGG 0.497452 7_1:-7873622 Msa1007980:CDS
GAGAGAGTGAGTGAGAGGGT+AGG 0.499483 7_1:+7874762 None:intergenic
CCCGATTAAGACAAAGAGTT+CGG 0.500972 7_1:-7869734 Msa1007980:CDS
AACAATTTCAAAGGTCTGAA+GGG 0.501465 7_1:+7868463 None:intergenic
CGCCAACAACAACGCGCGGT+TGG 0.503704 7_1:+7873743 None:intergenic
AGAGAGAGAGTGTTGTGTTG+TGG 0.506055 7_1:+7874964 None:intergenic
CTGGAAGCCGGTCGATAAAA+GGG 0.506947 7_1:+7869046 None:intergenic
ATCGTTGAGTTTCCACCACA+TGG 0.509992 7_1:+7870847 None:intergenic
GTACCTAGGGAGAGAGGAGA+AGG 0.515734 7_1:+7874664 None:intergenic
CAGTTGTCACCAACCCGAAT+GGG 0.516483 7_1:-7873895 Msa1007980:CDS
CAGAGATGGGCGGCCATGGG+AGG 0.516912 7_1:-7869699 Msa1007980:CDS
ACTCCACCATGCTGATTACT+GGG 0.517503 7_1:+7873973 None:intergenic
GTATATGGATGGTGGTTTAG+CGG 0.518430 7_1:-7873646 Msa1007980:CDS
CCACCTTCTCCTCTCTCCCT+AGG 0.520444 7_1:-7874667 Msa1007980:intron
TGGAATGGTGGATGAGGAGG+AGG 0.523089 7_1:-7869767 Msa1007980:CDS
TCTCATTTGCAAATTTGTAC+CGG 0.523525 7_1:+7868938 None:intergenic
ACAAATATGGGATTTACCAA+TGG 0.526887 7_1:-7870786 Msa1007980:CDS
TTTGTTGATCGGAAACATCC+AGG 0.527636 7_1:-7870204 Msa1007980:intron
CCTATGTGTTTAGATGTTGA+CGG 0.528827 7_1:-7870814 Msa1007980:CDS
CCTAGGGAGAGAGGAGAAGG+TGG 0.528999 7_1:+7874667 None:intergenic
TCGAGAGAATCACTTGTTGT+TGG 0.530666 7_1:-7873543 Msa1007980:CDS
CTAAGAAACCTCCTGGTTCG+AGG 0.530685 7_1:+7869100 None:intergenic
TTCTCATCATAGATATGCTA+TGG 0.530876 7_1:+7871423 None:intergenic
GAGTCCAAATCCCCACCAAA+TGG 0.533365 7_1:+7871367 None:intergenic
TATAGGTTGCTGGAGGGTGT+TGG 0.535254 7_1:-7871005 Msa1007980:intron
TTGTTACCAGAAGGAACGAT+TGG 0.535755 7_1:-7870874 Msa1007980:CDS
TGGCTGAGGAAGCTGGAAGC+CGG 0.537558 7_1:+7869034 None:intergenic
TTAAATTGCAATTGTGGTCG+CGG 0.538224 7_1:+7868591 None:intergenic
GAGCACATGGTTGTAAGTGT+TGG 0.541271 7_1:+7874804 None:intergenic
TCGTCGCCTAAGAAACCTCC+TGG 0.544040 7_1:+7869093 None:intergenic
TGGTAAATCCCATATTTGTA+CGG 0.545024 7_1:+7870790 None:intergenic
GGTCGATAAAAGGGCGTCGA+AGG 0.546041 7_1:+7869055 None:intergenic
GCAACTAGTGTCCTCGAACC+AGG 0.546742 7_1:-7869111 Msa1007980:CDS
ATGTCTCTCCTCAAACCCTC+AGG 0.547362 7_1:+7869645 None:intergenic
ATGAGAGAGTGATGAATCAA+AGG 0.547934 7_1:+7874718 None:intergenic
TTCTTTGGCATGTTCAGAGG+AGG 0.550810 7_1:-7870911 Msa1007980:CDS
CGCTGTCTATAGGGAGAGAA+GGG 0.551121 7_1:-7873680 Msa1007980:CDS
AGGATGGTGTTCATTGTTCG+CGG 0.551595 7_1:-7869174 Msa1007980:CDS
TCTTTCTTTGGCATGTTCAG+AGG 0.552414 7_1:-7870914 Msa1007980:CDS
ACTCGTCGAATTGGAGAACA+TGG 0.552999 7_1:-7868891 Msa1007980:CDS
CGGACGCTTCCCATTCGGGT+TGG 0.553468 7_1:+7873886 None:intergenic
AATGAACACCATCCTTGGTA+CGG 0.553769 7_1:+7869182 None:intergenic
CAGCTGGTGGAGTGGAACAC+TGG 0.556792 7_1:+7873924 None:intergenic
AAGACAAACAAATGTGGCTG+AGG 0.557236 7_1:+7869020 None:intergenic
GAAAGAGAGAGTGAGTGAGA+GGG 0.558022 7_1:+7874758 None:intergenic
TCTTTGCCATGACTGCATGT+AGG 0.558556 7_1:+7869820 None:intergenic
CAGGCAGAGGACTAGAGGTC+CGG 0.559424 7_1:-7868833 Msa1007980:CDS
CTGCTGAGACGGCAACTCCA+GGG 0.563137 7_1:+7874003 None:intergenic
AGGAGATCCCGTACCAAGGA+TGG 0.563141 7_1:-7869190 Msa1007980:CDS
TGGGTTGTCGTCTGCTGAGA+CGG 0.563719 7_1:+7873992 None:intergenic
TTATTTATTCAATAAGTACA+AGG 0.565084 7_1:+7868312 None:intergenic
GTTCCAATCCAAAACCGTCC+CGG 0.565425 7_1:-7873849 Msa1007980:CDS
ACATGGAATGGTGGATGAGG+AGG 0.567101 7_1:-7869770 Msa1007980:CDS
ATGAACACCATCCTTGGTAC+GGG 0.567853 7_1:+7869183 None:intergenic
ACTGGTTACGCAACGTAGAG+TGG 0.568861 7_1:+7874924 None:intergenic
AAGGAATTGCTGGATATGAC+AGG 0.571022 7_1:+7870757 None:intergenic
GCGCTGTCTATAGGGAGAGA+AGG 0.576916 7_1:-7873681 Msa1007980:CDS
ACAGTTGTCACCAACCCGAA+TGG 0.580011 7_1:-7873896 Msa1007980:CDS
TATAAGTCTTTGTTACCAGA+AGG 0.580998 7_1:-7870883 Msa1007980:CDS
GGTATTCCTACATGCAGTCA+TGG 0.581719 7_1:-7869826 Msa1007980:CDS
ACGTTGTTGATTGTGTTGCT+AGG 0.583661 7_1:+7874044 None:intergenic
GCAGCTGAGATGTCGAGACA+TGG 0.585933 7_1:-7869787 Msa1007980:CDS
CATTATATGAGATCTTTCAA+AGG 0.586227 7_1:-7873480 Msa1007980:CDS
CGTTACAGGCAGAGGACTAG+AGG 0.586315 7_1:-7868838 Msa1007980:CDS
TTGGTGGAAAATTCTTGGGA+AGG 0.587898 7_1:-7874070 Msa1007980:CDS
TCTCATATAATGAGAAGCAA+TGG 0.588285 7_1:+7873491 None:intergenic
ACAACTGTCTGCACAGCTGG+TGG 0.588412 7_1:+7873911 None:intergenic
CCGTGTTTGTATATGGATGG+TGG 0.588479 7_1:-7873654 Msa1007980:CDS
GGTACAAATTTGCAAATGAG+AGG 0.592078 7_1:-7868936 Msa1007980:CDS
CTTATTGAATAAATAATGAA+GGG 0.592287 7_1:-7868305 Msa1007980:three_prime_UTR
TGTTACGGTGGCGCGTACGG+TGG 0.595042 7_1:-7873619 Msa1007980:CDS
AAATTTGTACCGGAAATGAT+CGG 0.599973 7_1:+7868948 None:intergenic
GTGGAACAGATAATTAGAGA+AGG 0.600131 7_1:-7869210 Msa1007980:intron
TATAATTTATAGGTTGCTGG+AGG 0.602212 7_1:-7871012 Msa1007980:intron
TCATCCAAGTTGTGAAACAA+TGG 0.606915 7_1:+7869408 None:intergenic
ATAAAGAATCTTGACAGCCA+AGG 0.609534 7_1:+7870738 None:intergenic
AGAGAGAGTGTTGTGTTGTG+GGG 0.610133 7_1:+7874966 None:intergenic
ACGATTGGAAATCCATGTGG+TGG 0.610145 7_1:-7870859 Msa1007980:CDS
TCGCCGTGTTTGTATATGGA+TGG 0.612064 7_1:-7873657 Msa1007980:CDS
AATCACTTGTTGTTGGATGT+GGG 0.615349 7_1:-7873536 Msa1007980:CDS
TTATCCCTTACAGGAGTCAC+CGG 0.615827 7_1:+7868814 None:intergenic
TTGGATGTGGGAAACTCGTG+TGG 0.617664 7_1:-7873524 Msa1007980:CDS
TGTCTGCACAGCTGGTGGAG+TGG 0.617877 7_1:+7873916 None:intergenic
TAATGAGGTCCAAGCAAAGG+TGG 0.618800 7_1:+7869616 None:intergenic
TTTAGCGGCGGTTGTTACGG+TGG 0.620430 7_1:-7873631 Msa1007980:CDS
TATCATTCAAGATGATCATG+TGG 0.620994 7_1:+7868736 None:intergenic
GGCGCGTACGGTGGTTGATG+CGG 0.621889 7_1:-7873610 Msa1007980:CDS
CGAAACCAAAGTCTAAGCAA+AGG 0.623581 7_1:-7869141 Msa1007980:CDS
AAATGAGAGGCTAAAGAGAA+CGG 0.624073 7_1:-7868923 Msa1007980:CDS
ATATGACAGGAAGTGCCCAT+TGG 0.625889 7_1:+7870770 None:intergenic
ATAATGGAGGCACTGAGCGT+AGG 0.626496 7_1:-7868795 Msa1007980:CDS
ATAATTTATAGGTTGCTGGA+GGG 0.628248 7_1:-7871011 Msa1007980:intron
TGGATGGTACCTAGGGAGAG+AGG 0.630893 7_1:+7874658 None:intergenic
AGGTCCGGTGACTCCTGTAA+GGG 0.632405 7_1:-7868818 Msa1007980:CDS
CCGTCAACATCTAAACACAT+AGG 0.632629 7_1:+7870814 None:intergenic
CCACCATCCATATACAAACA+CGG 0.632835 7_1:+7873654 None:intergenic
GAGACATGGAATGGTGGATG+AGG 0.635573 7_1:-7869773 Msa1007980:CDS
CTGATCAAAGACTTACCTGA+GGG 0.638121 7_1:-7869660 Msa1007980:CDS
GCAGAAATATATGGCCGATG+TGG 0.644363 7_1:+7868646 None:intergenic
ACTCTTTGTCTTAATCGGGA+CGG 0.645228 7_1:+7869738 None:intergenic
CTAGGGAGAGAGGAGAAGGT+GGG 0.651532 7_1:+7874668 None:intergenic
TGAGATGTCGAGACATGGAA+TGG 0.654353 7_1:-7869782 Msa1007980:CDS
ATGGACACAAGTTTATCACA+TGG 0.655848 7_1:+7868566 None:intergenic
TGTTACGCATGCACACAAGT+TGG 0.659954 7_1:-7873951 Msa1007980:CDS
AGCAACACAATCAACAACGT+TGG 0.660753 7_1:-7874041 Msa1007980:CDS
TATCACAATTTCGACCACAT+CGG 0.665259 7_1:-7868660 Msa1007980:three_prime_UTR
GAGAAGGAGATCCCGTACCA+AGG 0.671658 7_1:-7869194 Msa1007980:CDS
TCTTGACAACATCTGTGACA+GGG 0.672297 7_1:-7869379 Msa1007980:CDS
TGATTCAAGACAAACAAATG+TGG 0.678063 7_1:+7869014 None:intergenic
TATGGATGGTGGTTTAGCGG+CGG 0.688411 7_1:-7873643 Msa1007980:CDS
GTGTGACAGTGAAGAGCACA+TGG 0.688980 7_1:+7874791 None:intergenic
CGACAACCCAGTAATCAGCA+TGG 0.695371 7_1:-7873979 Msa1007980:CDS
GCAGTATCAAAGCCAAATTG+GGG 0.708168 7_1:-7873813 Msa1007980:CDS
ACTGATCAAAGACTTACCTG+AGG 0.709178 7_1:-7869661 Msa1007980:CDS
CTCGTCGAATTGGAGAACAT+GGG 0.715220 7_1:-7868890 Msa1007980:CDS
GGTGACAGCAGTGATGACCC+TGG 0.715870 7_1:-7874020 Msa1007980:CDS
CAACCCAGTAATCAGCATGG+TGG 0.718534 7_1:-7873976 Msa1007980:CDS
TGGATGTGGGAAACTCGTGT+GGG 0.721902 7_1:-7873523 Msa1007980:CDS
GATGTCGAGACATGGAATGG+TGG 0.724616 7_1:-7869779 Msa1007980:CDS
TGGAACTAGATAGGAACCGG+CGG 0.730012 7_1:+7873866 None:intergenic
ACTCCTGTAAGGGATAATGG+AGG 0.737690 7_1:-7868808 Msa1007980:CDS
GGAACGATTGGAAATCCATG+TGG 0.744870 7_1:-7870862 Msa1007980:CDS
ACTAGTGTCCTCGAACCAGG+AGG 0.746623 7_1:-7869108 Msa1007980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTATTTTTATTTATT+TGG - chr7_1:7874646-7874665 Msa1007980:intron 0.0%
!! TATTTAATCTAAATTTAGAT+TGG - chr7_1:7868655-7868674 Msa1007980:three_prime_UTR 10.0%
!! AGTAAAAAAAAAAAGAATAA+TGG + chr7_1:7869780-7869799 None:intergenic 10.0%
!!! CAATTATTATAATATTTTTG+TGG - chr7_1:7869800-7869819 Msa1007980:CDS 10.0%
!!! ATAAACTTTATAGTTTTTTT+TGG + chr7_1:7871492-7871511 None:intergenic 10.0%
!! AAAAAACTATAAAGTTTATT+TGG - chr7_1:7871493-7871512 Msa1007980:CDS 10.0%
!! ATATTTATTTGTAACAATAT+TGG + chr7_1:7873251-7873270 None:intergenic 10.0%
!! TGTTAGATTAAAAATAATTA+AGG - chr7_1:7873672-7873691 Msa1007980:CDS 10.0%
!! GTTAGATTAAAAATAATTAA+GGG - chr7_1:7873673-7873692 Msa1007980:CDS 10.0%
!!! ATTTATTTGGTTTTTTATTT+TGG - chr7_1:7874659-7874678 Msa1007980:intron 10.0%
!!! TTTATTTGGTTTTTTATTTT+GGG - chr7_1:7874660-7874679 Msa1007980:intron 10.0%
!!! TATTTTTGTTTTTAATAGAA+AGG + chr7_1:7874944-7874963 None:intergenic 10.0%
!! TTTCTATTAAAAACAAAAAT+AGG - chr7_1:7874943-7874962 Msa1007980:five_prime_UTR 10.0%
!! TTCTATTAAAAACAAAAATA+GGG - chr7_1:7874944-7874963 Msa1007980:five_prime_UTR 10.0%
!! AATATAAATGTATAAGATGA+TGG + chr7_1:7868339-7868358 None:intergenic 15.0%
!!! ATCTTTAAAAATTTTAAACG+TGG - chr7_1:7870634-7870653 Msa1007980:intron 15.0%
!!! TCTTTAAAAATTTTAAACGT+GGG - chr7_1:7870635-7870654 Msa1007980:intron 15.0%
!!! TTTAATCTTTTGTTCTTTTA+AGG - chr7_1:7870658-7870677 Msa1007980:intron 15.0%
!!! ATAAATAAACAGTTTTTTCT+TGG + chr7_1:7870840-7870859 None:intergenic 15.0%
!! AAAAACTGTTTATTTATTGT+TGG - chr7_1:7870843-7870862 Msa1007980:CDS 15.0%
!!! TAAATAGTATGCATATTTTT+TGG - chr7_1:7871123-7871142 Msa1007980:intron 15.0%
!! ATGTGAAATAGAATATTATT+TGG + chr7_1:7872809-7872828 None:intergenic 15.0%
!!! TATTTTTAATCTAACAACTT+AGG + chr7_1:7873668-7873687 None:intergenic 15.0%
!! AAAATAAATAAAACCAATCA+TGG + chr7_1:7874638-7874657 None:intergenic 15.0%
!!! TTATTTGGTTTTTTATTTTG+GGG - chr7_1:7874661-7874680 Msa1007980:intron 15.0%
!!! TTTTCACATAAAATTTATTG+AGG + chr7_1:7874695-7874714 None:intergenic 15.0%
!!! TTTTCAAATAACAATTTCAA+AGG + chr7_1:7874731-7874750 None:intergenic 15.0%
!! TTATTTATTCAATAAGTACA+AGG + chr7_1:7874873-7874892 None:intergenic 15.0%
!! ACTTATTGAATAAATAATGA+AGG - chr7_1:7874876-7874895 Msa1007980:five_prime_UTR 15.0%
!! CTTATTGAATAAATAATGAA+GGG - chr7_1:7874877-7874896 Msa1007980:five_prime_UTR 15.0%
!! ACTAAATATGTTAATTAACG+AGG - chr7_1:7868760-7868779 Msa1007980:CDS 20.0%
!! CTAAATATGTTAATTAACGA+GGG - chr7_1:7868761-7868780 Msa1007980:CDS 20.0%
!!! CATGATATGTAGATATTTTA+AGG + chr7_1:7869919-7869938 None:intergenic 20.0%
!!! ATGAGTAAAAGAGTTTTATA+CGG - chr7_1:7869953-7869972 Msa1007980:intron 20.0%
!!! GATATAAACATATTTTACGT+TGG - chr7_1:7870032-7870051 Msa1007980:intron 20.0%
!! GTAAAATATCTTTACATTGT+CGG + chr7_1:7870083-7870102 None:intergenic 20.0%
!!! TTTCATTCATTTAACGATTT+TGG + chr7_1:7870118-7870137 None:intergenic 20.0%
!!! AATCATGTTTCTGAATTTAA+AGG + chr7_1:7870164-7870183 None:intergenic 20.0%
!!! ATGTTTTTGTTTTTACTACT+TGG - chr7_1:7870385-7870404 Msa1007980:intron 20.0%
!! ATTATTAAACCAATCAAAAG+TGG + chr7_1:7870507-7870526 None:intergenic 20.0%
!! GAATGAGTAAATATTCAAAT+TGG - chr7_1:7870568-7870587 Msa1007980:intron 20.0%
!!! TGTTCTTTTAAGGATAATTA+TGG - chr7_1:7870668-7870687 Msa1007980:intron 20.0%
!! GTTACAATATATAATCAAGT+TGG + chr7_1:7870818-7870837 None:intergenic 20.0%
!! TTATTTATTGTTGGATAAAG+AGG - chr7_1:7870852-7870871 Msa1007980:CDS 20.0%
!! TAACAAGAACAAACATATAA+AGG + chr7_1:7871585-7871604 None:intergenic 20.0%
!! AATCTCTTGTGTAAAAAATA+GGG - chr7_1:7871985-7872004 Msa1007980:intron 20.0%
!!! ATAAACACTTCTAAGATAAA+AGG - chr7_1:7872141-7872160 Msa1007980:intron 20.0%
!! AAGGTTATGCTATAATTTAT+AGG - chr7_1:7872160-7872179 Msa1007980:intron 20.0%
!! TTAATTATATCTTGAACTGT+TGG - chr7_1:7872681-7872700 Msa1007980:intron 20.0%
!! TAATTATATCTTGAACTGTT+GGG - chr7_1:7872682-7872701 Msa1007980:intron 20.0%
!!! TTAAACTTCAGAAAGATTTT+AGG + chr7_1:7872742-7872761 None:intergenic 20.0%
!! ATAGATGTTAACTAAATCAA+GGG + chr7_1:7872838-7872857 None:intergenic 20.0%
!! AATCCAATAATAATCTACTT+CGG + chr7_1:7873007-7873026 None:intergenic 20.0%
!! AAGTAGATTATTATTGGATT+TGG - chr7_1:7873007-7873026 Msa1007980:intron 20.0%
!! TTTAATCTTGATCCAAAAAT+CGG - chr7_1:7873168-7873187 Msa1007980:intron 20.0%
!! TATTTGTAACAATATTGGAT+TGG + chr7_1:7873246-7873265 None:intergenic 20.0%
!!! TATTTCTAACCTTTTTAATG+AGG + chr7_1:7873584-7873603 None:intergenic 20.0%
!!! ATTTGAACAATTTCCTTTTA+AGG - chr7_1:7874844-7874863 Msa1007980:five_prime_UTR 20.0%
!!! TTTGATTTTGCATGTGAATT+TGG + chr7_1:7868298-7868317 None:intergenic 25.0%
! ATGATATTGAAGGATGAAAT+TGG + chr7_1:7868558-7868577 None:intergenic 25.0%
! CAATTGAAAGATGATATTGA+AGG + chr7_1:7868568-7868587 None:intergenic 25.0%
!! TACTTGTATTTAAGATCAGA+TGG - chr7_1:7868693-7868712 Msa1007980:intron 25.0%
!! TTGGTGGATAAATAACTTAA+GGG + chr7_1:7868895-7868914 None:intergenic 25.0%
!! ATTGGTGGATAAATAACTTA+AGG + chr7_1:7868896-7868915 None:intergenic 25.0%
! AATGGTTGAAATTACATAGA+TGG + chr7_1:7868940-7868959 None:intergenic 25.0%
! CATTATATGAGATCTTTCAA+AGG - chr7_1:7869702-7869721 Msa1007980:CDS 25.0%
! ATGTATAAAGATCCATTTCT+AGG - chr7_1:7869979-7869998 Msa1007980:intron 25.0%
! TCAAAATCATAACCTAGAAA+TGG + chr7_1:7869994-7870013 None:intergenic 25.0%
! GTGAACCAAAAATATATTAG+TGG + chr7_1:7870295-7870314 None:intergenic 25.0%
!! AATTGATGCTTTTCAACTTA+TGG - chr7_1:7870769-7870788 Msa1007980:CDS 25.0%
!! AATTGATTCCTGAAATATTG+TGG - chr7_1:7870882-7870901 Msa1007980:CDS 25.0%
! AATTTATTCCATGTGTCTAT+AGG + chr7_1:7871040-7871059 None:intergenic 25.0%
!! CAGTAATCAAATCTAAAACA+AGG + chr7_1:7871364-7871383 None:intergenic 25.0%
! CAATCTCTTGTGTAAAAAAT+AGG - chr7_1:7871984-7872003 Msa1007980:intron 25.0%
!! CTTGGTAATAGCAAAAAAAA+GGG + chr7_1:7872091-7872110 None:intergenic 25.0%
!! ACTTGGTAATAGCAAAAAAA+AGG + chr7_1:7872092-7872111 None:intergenic 25.0%
!!! AGATTCTTTATCCCATTTTT+TGG - chr7_1:7872456-7872475 Msa1007980:intron 25.0%
!!! GATTCTTTATCCCATTTTTT+GGG - chr7_1:7872457-7872476 Msa1007980:intron 25.0%
!!! ATTCTTTATCCCATTTTTTG+GGG - chr7_1:7872458-7872477 Msa1007980:intron 25.0%
! TAAAATGTAATTCTGGTAAC+TGG - chr7_1:7872710-7872729 Msa1007980:intron 25.0%
! CATAGATGTTAACTAAATCA+AGG + chr7_1:7872839-7872858 None:intergenic 25.0%
!!! TTACTTTTCACTTTGTTGAT+CGG - chr7_1:7872967-7872986 Msa1007980:intron 25.0%
! TATCCGAAGTAGATTATTAT+TGG - chr7_1:7873001-7873020 Msa1007980:intron 25.0%
! CAAATACTGAACTTAAAATC+TGG + chr7_1:7873105-7873124 None:intergenic 25.0%
!!! TTTTTCAAATGGAATGCTTT+CGG + chr7_1:7873901-7873920 None:intergenic 25.0%
!! AAAGCATTCCATTTGAAAAA+AGG - chr7_1:7873901-7873920 Msa1007980:CDS 25.0%
!!! TTTGAAGTCCTTTTTTCAAA+TGG + chr7_1:7873912-7873931 None:intergenic 25.0%
!!! ATGGTTTTAAATTGCAATTG+TGG + chr7_1:7874600-7874619 None:intergenic 25.0%
! CTCATAAAAAATGAATGAAC+AGG + chr7_1:7874818-7874837 None:intergenic 25.0%
AAATTAAAATGTGCTCTCTC+TGG - chr7_1:7868608-7868627 Msa1007980:three_prime_UTR 30.0%
TTGATCCAATGGTGTATAAT+TGG + chr7_1:7868914-7868933 None:intergenic 30.0%
ATAGATGGAATTTGATCCAA+TGG + chr7_1:7868925-7868944 None:intergenic 30.0%
! AACCATTTTCTACTTCTCAA+AGG - chr7_1:7868953-7868972 Msa1007980:CDS 30.0%
! ACCATTTTCTACTTCTCAAA+GGG - chr7_1:7868954-7868973 Msa1007980:CDS 30.0%
!! CTGATGTATGTTTTTGTTAC+AGG - chr7_1:7869085-7869104 Msa1007980:CDS 30.0%
!! ATGTATGTTTTTGTTACAGG+TGG - chr7_1:7869088-7869107 Msa1007980:CDS 30.0%
TCTCATATAATGAGAAGCAA+TGG + chr7_1:7869694-7869713 None:intergenic 30.0%
! TGAGATCTTTCAAAGGTTTT+TGG - chr7_1:7869709-7869728 Msa1007980:CDS 30.0%
AATGGAAAATTTCATACCTG+AGG + chr7_1:7869762-7869781 None:intergenic 30.0%
! ATGTTTGAGATTGTTTGATG+TGG - chr7_1:7870268-7870287 Msa1007980:CDS 30.0%
! GTGGTCCACTAATATATTTT+TGG - chr7_1:7870287-7870306 Msa1007980:CDS 30.0%
! ATTGAAGAATTTTCCAACAC+CGG + chr7_1:7870329-7870348 None:intergenic 30.0%
TAAAAATCTCACATGTGTGT+GGG + chr7_1:7870742-7870761 None:intergenic 30.0%
TTAAAAATCTCACATGTGTG+TGG + chr7_1:7870743-7870762 None:intergenic 30.0%
! TTTCAACTTATGGTTCTATG+TGG - chr7_1:7870779-7870798 Msa1007980:CDS 30.0%
TTAGTAGACCACAATATTTC+AGG + chr7_1:7870893-7870912 None:intergenic 30.0%
! TGAGCTATTTAGAGGTATAT+TGG + chr7_1:7871403-7871422 None:intergenic 30.0%
TAACTTAGTGAGCTATTTAG+AGG + chr7_1:7871411-7871430 None:intergenic 30.0%
!!! TCTGATTTTGTTTTGTTTGC+AGG - chr7_1:7871630-7871649 Msa1007980:intron 30.0%
! CTCTCTTCTCTTATCAATTT+TGG + chr7_1:7871676-7871695 None:intergenic 30.0%
ATATGCTATGGTAAACCTTA+GGG + chr7_1:7871750-7871769 None:intergenic 30.0%
TTCTCATCATAGATATGCTA+TGG + chr7_1:7871762-7871781 None:intergenic 30.0%
ATCACTATTACCAAGTTAGA+GGG - chr7_1:7871894-7871913 Msa1007980:intron 30.0%
! TCTGCTACTTAATGATAACT+TGG + chr7_1:7872109-7872128 None:intergenic 30.0%
TGCTATAATTTATAGGTTGC+TGG - chr7_1:7872167-7872186 Msa1007980:intron 30.0%
TATAATTTATAGGTTGCTGG+AGG - chr7_1:7872170-7872189 Msa1007980:intron 30.0%
ATAATTTATAGGTTGCTGGA+GGG - chr7_1:7872171-7872190 Msa1007980:intron 30.0%
TATTGGATGCAATCTTTCTT+TGG - chr7_1:7872256-7872275 Msa1007980:intron 30.0%
TATAAGTCTTTGTTACCAGA+AGG - chr7_1:7872299-7872318 Msa1007980:intron 30.0%
TGGTAAATCCCATATTTGTA+CGG + chr7_1:7872395-7872414 None:intergenic 30.0%
ACAAATATGGGATTTACCAA+TGG - chr7_1:7872396-7872415 Msa1007980:intron 30.0%
CAAATATGGGATTTACCAAT+GGG - chr7_1:7872397-7872416 Msa1007980:intron 30.0%
AAATAAGCCAATTTACCTGA+GGG + chr7_1:7872492-7872511 None:intergenic 30.0%
TAAACACTTGTCAAACTGTT+TGG - chr7_1:7872543-7872562 Msa1007980:intron 30.0%
AAACACTTGTCAAACTGTTT+GGG - chr7_1:7872544-7872563 Msa1007980:intron 30.0%
! AATAAGTTGGAAACAGCTTA+TGG + chr7_1:7872599-7872618 None:intergenic 30.0%
GAGAACTTATGGAAATAAGT+TGG + chr7_1:7872612-7872631 None:intergenic 30.0%
TTATTTCCATAAGTTCTCCA+GGG - chr7_1:7872614-7872633 Msa1007980:intron 30.0%
! GGAGTGTTAAAATGTAATTC+TGG - chr7_1:7872703-7872722 Msa1007980:intron 30.0%
CATCTTAATCTAACACATTG+AGG + chr7_1:7872783-7872802 None:intergenic 30.0%
! ACAATATTGGATTGGATTTC+CGG + chr7_1:7873238-7873257 None:intergenic 30.0%
AACTGTTTCCTATTCAAACA+TGG - chr7_1:7873304-7873323 Msa1007980:intron 30.0%
TTGTTAGACCATGTTTGAAT+AGG + chr7_1:7873315-7873334 None:intergenic 30.0%
ATTCAAACATGGTCTAACAA+TGG - chr7_1:7873315-7873334 Msa1007980:intron 30.0%
TTCAAACATGGTCTAACAAT+GGG - chr7_1:7873316-7873335 Msa1007980:intron 30.0%
! GTCAAATTTGTTTCATTTGC+AGG + chr7_1:7873613-7873632 None:intergenic 30.0%
GAAATTTATCCATCTTCTTC+AGG + chr7_1:7873646-7873665 None:intergenic 30.0%
TCTTTGATATGTATCCTTTG+TGG - chr7_1:7873953-7873972 Msa1007980:CDS 30.0%
TCTAATTATCTGTTCCACAA+AGG + chr7_1:7873970-7873989 None:intergenic 30.0%
TGATTCAAGACAAACAAATG+TGG + chr7_1:7874171-7874190 None:intergenic 30.0%
AAATTTGTACCGGAAATGAT+CGG + chr7_1:7874237-7874256 None:intergenic 30.0%
TCTCATTTGCAAATTTGTAC+CGG + chr7_1:7874247-7874266 None:intergenic 30.0%
TATCATTCAAGATGATCATG+TGG + chr7_1:7874449-7874468 None:intergenic 30.0%
ATAAAGTTCTGTGAATGCAA+TGG - chr7_1:7874466-7874485 Msa1007980:intron 30.0%
!! CCATATATTTCTGCATTTTG+CGG - chr7_1:7874545-7874564 Msa1007980:intron 30.0%
AACAATTTCAAAGGTCTGAA+GGG + chr7_1:7874722-7874741 None:intergenic 30.0%
TAACAATTTCAAAGGTCTGA+AGG + chr7_1:7874723-7874742 None:intergenic 30.0%
AAAGAGAGAAATAGTGATTC+AGG - chr7_1:7874780-7874799 Msa1007980:five_prime_UTR 30.0%
TTGGTGAAGTGAATTGAAAC+TGG + chr7_1:7868279-7868298 None:intergenic 35.0%
ATGAGAGAGTGATGAATCAA+AGG + chr7_1:7868467-7868486 None:intergenic 35.0%
TTTGATTCATCACTCTCTCA+TGG - chr7_1:7868466-7868485 Msa1007980:three_prime_UTR 35.0%
ATCCACCAATTATACACCAT+TGG - chr7_1:7868906-7868925 Msa1007980:CDS 35.0%
ATCCAATGGTGTATAATTGG+TGG + chr7_1:7868911-7868930 None:intergenic 35.0%
TACACTACTACAAGTCTACA+AGG + chr7_1:7869012-7869031 None:intergenic 35.0%
!! TGTTTTTGTTACAGGTGGAT+TGG - chr7_1:7869093-7869112 Msa1007980:CDS 35.0%
!! TGGATTGGTGGAAAATTCTT+GGG - chr7_1:7869108-7869127 Msa1007980:CDS 35.0%
!! GTTTTGGATTGGAACTAGAT+AGG + chr7_1:7869328-7869347 None:intergenic 35.0%
AGCAGTATCAAAGCCAAATT+GGG - chr7_1:7869368-7869387 Msa1007980:CDS 35.0%
!! AATCACTTGTTGTTGGATGT+GGG - chr7_1:7869646-7869665 Msa1007980:CDS 35.0%
AAATTTCATACCTGAGGAAC+AGG + chr7_1:7869756-7869775 None:intergenic 35.0%
!! TAGTTGAGTCCACTTTTGAT+TGG - chr7_1:7870495-7870514 Msa1007980:intron 35.0%
AAAAATCTCACATGTGTGTG+GGG + chr7_1:7870741-7870760 None:intergenic 35.0%
ATTTGAGTCCTATAGACACA+TGG - chr7_1:7871029-7871048 Msa1007980:intron 35.0%
! ACATATGTGCAATTTTGCGT+GGG + chr7_1:7871307-7871326 None:intergenic 35.0%
CAAGGCAATAATCAAGTAAC+AGG + chr7_1:7871346-7871365 None:intergenic 35.0%
! TTTGTTTGCAGGTTGTGTTT+TGG - chr7_1:7871641-7871660 Msa1007980:intron 35.0%
TTTGTTCCAATTTCTCCCTA+AGG - chr7_1:7871732-7871751 Msa1007980:intron 35.0%
GATATGCTATGGTAAACCTT+AGG + chr7_1:7871751-7871770 None:intergenic 35.0%
AGAAGAATGCAAAAAGTCAC+AGG - chr7_1:7871778-7871797 Msa1007980:intron 35.0%
! CTAACTTGGTAATAGTGATG+AGG + chr7_1:7871893-7871912 None:intergenic 35.0%
CATCACTATTACCAAGTTAG+AGG - chr7_1:7871893-7871912 Msa1007980:intron 35.0%
TCACTATTACCAAGTTAGAG+GGG - chr7_1:7871895-7871914 Msa1007980:intron 35.0%
CTTGTGTAAAAAATAGGGCA+AGG - chr7_1:7871990-7872009 Msa1007980:intron 35.0%
TTGCGTACAATGCACTAAAA+TGG - chr7_1:7872013-7872032 Msa1007980:intron 35.0%
GTACAATGCACTAAAATGGT+GGG - chr7_1:7872017-7872036 Msa1007980:intron 35.0%
CCTATGTGTTTAGATGTTGA+CGG - chr7_1:7872368-7872387 Msa1007980:intron 35.0%
ATAAAGAATCTTGACAGCCA+AGG + chr7_1:7872447-7872466 None:intergenic 35.0%
GTCATCAAACCCCAAAAAAT+GGG + chr7_1:7872470-7872489 None:intergenic 35.0%
CAAATAAGCCAATTTACCTG+AGG + chr7_1:7872493-7872512 None:intergenic 35.0%
CTTATTTCCATAAGTTCTCC+AGG - chr7_1:7872613-7872632 Msa1007980:intron 35.0%
TGCAAGAATTAGTAGGGATT+AGG + chr7_1:7872867-7872886 None:intergenic 35.0%
! AAGTGCTGCAAGAATTAGTA+GGG + chr7_1:7872873-7872892 None:intergenic 35.0%
!! AAAGTGCTGCAAGAATTAGT+AGG + chr7_1:7872874-7872893 None:intergenic 35.0%
! ACTAATTCTTGCAGCACTTT+TGG - chr7_1:7872874-7872893 Msa1007980:intron 35.0%
AATAATCTACTTCGGATACC+TGG + chr7_1:7872999-7873018 None:intergenic 35.0%
ATTGTGTAAATGTGTCGTGT+GGG - chr7_1:7873201-7873220 Msa1007980:intron 35.0%
!! TGGGACTATTTCTACTATGA+AGG - chr7_1:7873335-7873354 Msa1007980:intron 35.0%
! AAAGAGTTCGGCATTTTGAA+CGG - chr7_1:7873460-7873479 Msa1007980:CDS 35.0%
! TTTTAATGAGGTCCAAGCAA+AGG + chr7_1:7873572-7873591 None:intergenic 35.0%
TTGCTTGGACCTCATTAAAA+AGG - chr7_1:7873572-7873591 Msa1007980:CDS 35.0%
ATCTTCTTCAGGCAACTTTA+CGG + chr7_1:7873635-7873654 None:intergenic 35.0%
ACAAACAGACACTACTTATC+AGG + chr7_1:7873746-7873765 None:intergenic 35.0%
TCATCCAAGTTGTGAAACAA+TGG + chr7_1:7873777-7873796 None:intergenic 35.0%
GTGGAACAGATAATTAGAGA+AGG - chr7_1:7873972-7873991 Msa1007980:CDS 35.0%
! CTTGAATCAACTGAAGCATT+CGG - chr7_1:7874182-7874201 Msa1007980:intron 35.0%
GTCTTGATGCTCAAAACTTA+AGG - chr7_1:7874204-7874223 Msa1007980:intron 35.0%
GGTACAAATTTGCAAATGAG+AGG - chr7_1:7874246-7874265 Msa1007980:intron 35.0%
AAATGAGAGGCTAAAGAGAA+CGG - chr7_1:7874259-7874278 Msa1007980:intron 35.0%
! AACTTGCTTATAGACGTTAC+AGG - chr7_1:7874330-7874349 Msa1007980:intron 35.0%
CTGCAATGTTCATGTCAATT+AGG - chr7_1:7874423-7874442 Msa1007980:intron 35.0%
TGTGATATGTGATATTCCTG+TGG + chr7_1:7874509-7874528 None:intergenic 35.0%
TATCACAATTTCGACCACAT+CGG - chr7_1:7874522-7874541 Msa1007980:intron 35.0%
CCGCAAAATGCAGAAATATA+TGG + chr7_1:7874548-7874567 None:intergenic 35.0%
TTAAATTGCAATTGTGGTCG+CGG + chr7_1:7874594-7874613 None:intergenic 35.0%
ATGGACACAAGTTTATCACA+TGG + chr7_1:7874619-7874638 None:intergenic 35.0%
GATAAACTTGTGTCCATGAT+TGG - chr7_1:7874622-7874641 Msa1007980:intron 35.0%
! AGAGTGGATGCTAGTGTTTT+GGG + chr7_1:7868245-7868264 None:intergenic 40.0%
! TAGAGTGGATGCTAGTGTTT+TGG + chr7_1:7868246-7868265 None:intergenic 40.0%
! GAAATTGGTAGAGTGATGGA+TGG + chr7_1:7868543-7868562 None:intergenic 40.0%
GGATGAAATTGGTAGAGTGA+TGG + chr7_1:7868547-7868566 None:intergenic 40.0%
! AAGATCAGATGGAGTACTAC+TGG - chr7_1:7868704-7868723 Msa1007980:intron 40.0%
! GCCCTTTGAGAAGTAGAAAA+TGG + chr7_1:7868958-7868977 None:intergenic 40.0%
!!! TTTTGTTACAGGTGGATTGG+TGG - chr7_1:7869096-7869115 Msa1007980:CDS 40.0%
!! GTGGATTGGTGGAAAATTCT+TGG - chr7_1:7869107-7869126 Msa1007980:CDS 40.0%
TTGGTGGAAAATTCTTGGGA+AGG - chr7_1:7869112-7869131 Msa1007980:CDS 40.0%
! ACGTTGTTGATTGTGTTGCT+AGG + chr7_1:7869141-7869160 None:intergenic 40.0%
AGCAACACAATCAACAACGT+TGG - chr7_1:7869141-7869160 Msa1007980:CDS 40.0%
GATTGGAACTAGATAGGAAC+CGG + chr7_1:7869322-7869341 None:intergenic 40.0%
! TACTGCTCTTGCGAATTTTC+CGG + chr7_1:7869355-7869374 None:intergenic 40.0%
GAGCAGTATCAAAGCCAAAT+TGG - chr7_1:7869367-7869386 Msa1007980:CDS 40.0%
GCAGTATCAAAGCCAAATTG+GGG - chr7_1:7869369-7869388 Msa1007980:CDS 40.0%
! AAGCCAAATTGGGGAGTTTT+AGG - chr7_1:7869378-7869397 Msa1007980:CDS 40.0%
TTGCCTAAAACTCCCCAATT+TGG + chr7_1:7869384-7869403 None:intergenic 40.0%
! TTTTTCTACGCGCTGTCTAT+AGG - chr7_1:7869492-7869511 Msa1007980:intron 40.0%
! TTTTCTACGCGCTGTCTATA+GGG - chr7_1:7869493-7869512 Msa1007980:intron 40.0%
CCACCATCCATATACAAACA+CGG + chr7_1:7869531-7869550 None:intergenic 40.0%
! GTATATGGATGGTGGTTTAG+CGG - chr7_1:7869536-7869555 Msa1007980:intron 40.0%
CGGTGCATTTGTTTCATGTT+TGG - chr7_1:7869592-7869611 Msa1007980:intron 40.0%
!! TCGAGAGAATCACTTGTTGT+TGG - chr7_1:7869639-7869658 Msa1007980:CDS 40.0%
!! GAATCACTTGTTGTTGGATG+TGG - chr7_1:7869645-7869664 Msa1007980:CDS 40.0%
TGTTATTCTTCCTGTTCCTC+AGG - chr7_1:7869743-7869762 Msa1007980:CDS 40.0%
! CACATATGTGCAATTTTGCG+TGG + chr7_1:7871308-7871327 None:intergenic 40.0%
GGTAAACCTTAGGGAGAAAT+TGG + chr7_1:7871741-7871760 None:intergenic 40.0%
AAAGTCACAGGCTACATCTT+TGG - chr7_1:7871790-7871809 Msa1007980:intron 40.0%
CACTATTACCAAGTTAGAGG+GGG - chr7_1:7871896-7871915 Msa1007980:intron 40.0%
TTACACAAGAGATTGCTTCC+AGG + chr7_1:7871979-7871998 None:intergenic 40.0%
CGTACAATGCACTAAAATGG+TGG - chr7_1:7872016-7872035 Msa1007980:intron 40.0%
TTCTTTCACACTGCTGTTGA+AGG + chr7_1:7872235-7872254 None:intergenic 40.0%
CAGCAGTGTGAAAGAACTAT+TGG - chr7_1:7872239-7872258 Msa1007980:intron 40.0%
TCTTTCTTTGGCATGTTCAG+AGG - chr7_1:7872268-7872287 Msa1007980:intron 40.0%
TTGTTACCAGAAGGAACGAT+TGG - chr7_1:7872308-7872327 Msa1007980:intron 40.0%
CCGTCAACATCTAAACACAT+AGG + chr7_1:7872371-7872390 None:intergenic 40.0%
! TTGACGGACCGTACAAATAT+GGG - chr7_1:7872384-7872403 Msa1007980:intron 40.0%
AAGGAATTGCTGGATATGAC+AGG + chr7_1:7872428-7872447 None:intergenic 40.0%
TGTCATATCCAGCAATTCCT+TGG - chr7_1:7872427-7872446 Msa1007980:intron 40.0%
GGTCATCAAACCCCAAAAAA+TGG + chr7_1:7872471-7872490 None:intergenic 40.0%
! TTGATGACCCTCAGGTAAAT+TGG - chr7_1:7872482-7872501 Msa1007980:intron 40.0%
! AAACTGTTTGGGAGAGCTTT+TGG - chr7_1:7872555-7872574 Msa1007980:intron 40.0%
ATCTTGAACCCACAAGTAAC+TGG - chr7_1:7872902-7872921 Msa1007980:intron 40.0%
ACTTCTAGCCAGTTACTTGT+GGG + chr7_1:7872913-7872932 None:intergenic 40.0%
TTTGTTGATCGGAAACATCC+AGG - chr7_1:7872978-7872997 Msa1007980:intron 40.0%
CATTCACACAATCAGCACAT+TGG - chr7_1:7873053-7873072 Msa1007980:intron 40.0%
!! ATCAGCACATTGGTGACTTT+TGG - chr7_1:7873063-7873082 Msa1007980:intron 40.0%
! GTGACTTTTGGATCAAGAAC+AGG - chr7_1:7873075-7873094 Msa1007980:intron 40.0%
! ACTTTTGGATCAAGAACAGG+CGG - chr7_1:7873078-7873097 Msa1007980:intron 40.0%
TTGATCCAAAAATCGGCGAT+GGG - chr7_1:7873175-7873194 Msa1007980:intron 40.0%
GATTGTGTAAATGTGTCGTG+TGG - chr7_1:7873200-7873219 Msa1007980:intron 40.0%
ACTCTTTGTCTTAATCGGGA+CGG + chr7_1:7873447-7873466 None:intergenic 40.0%
CCGAACTCTTTGTCTTAATC+GGG + chr7_1:7873451-7873470 None:intergenic 40.0%
CCCGATTAAGACAAAGAGTT+CGG - chr7_1:7873448-7873467 Msa1007980:CDS 40.0%
GCCGAACTCTTTGTCTTAAT+CGG + chr7_1:7873452-7873471 None:intergenic 40.0%
ACTGATCAAAGACTTACCTG+AGG - chr7_1:7873521-7873540 Msa1007980:CDS 40.0%
CTGATCAAAGACTTACCTGA+GGG - chr7_1:7873522-7873541 Msa1007980:CDS 40.0%
GTAAAGTTGCCTGAAGAAGA+TGG - chr7_1:7873634-7873653 Msa1007980:CDS 40.0%
CAGACACTACTTATCAGGAA+AGG + chr7_1:7873741-7873760 None:intergenic 40.0%
AAGTAGTGTCTGTTTGTGAC+AGG - chr7_1:7873749-7873768 Msa1007980:CDS 40.0%
GGTACCATTGTTTCACAACT+TGG - chr7_1:7873770-7873789 Msa1007980:CDS 40.0%
TTCTTGACAACATCTGTGAC+AGG - chr7_1:7873802-7873821 Msa1007980:CDS 40.0%
TCTTGACAACATCTGTGACA+GGG - chr7_1:7873803-7873822 Msa1007980:CDS 40.0%
TCATCTCGAGAGAAGACTAA+AGG + chr7_1:7873834-7873853 None:intergenic 40.0%
AGTCTTCTCTCGAGATGAAA+AGG - chr7_1:7873836-7873855 Msa1007980:CDS 40.0%
GGACTTCAAAATGACGATCA+TGG - chr7_1:7873922-7873941 Msa1007980:CDS 40.0%
AATGAACACCATCCTTGGTA+CGG + chr7_1:7874003-7874022 None:intergenic 40.0%
CGAAACCAAAGTCTAAGCAA+AGG - chr7_1:7874041-7874060 Msa1007980:CDS 40.0%
CAATGCCTTTGCTTAGACTT+TGG + chr7_1:7874049-7874068 None:intergenic 40.0%
AAGACAAACAAATGTGGCTG+AGG + chr7_1:7874165-7874184 None:intergenic 40.0%
GGTACATAACCGATCATTTC+CGG - chr7_1:7874225-7874244 Msa1007980:intron 40.0%
AAGAAGTTTGAACTCTCCAC+AGG - chr7_1:7874490-7874509 Msa1007980:intron 40.0%
AAGTACAAGGCAGCCTTAAA+AGG + chr7_1:7874860-7874879 None:intergenic 40.0%
!! GAGAGAGAGTGTTGTGTTGT+GGG + chr7_1:7868220-7868239 None:intergenic 45.0%
!! AGAGAGAGAGTGTTGTGTTG+TGG + chr7_1:7868221-7868240 None:intergenic 45.0%
GAGCACATGGTTGTAAGTGT+TGG + chr7_1:7868381-7868400 None:intergenic 45.0%
GAAAGAGAGAGTGAGTGAGA+GGG + chr7_1:7868427-7868446 None:intergenic 45.0%
TGAAAGAGAGAGTGAGTGAG+AGG + chr7_1:7868428-7868447 None:intergenic 45.0%
!! AGAGTGATGGATGGTACCTA+GGG + chr7_1:7868534-7868553 None:intergenic 45.0%
!! TAGAGTGATGGATGGTACCT+AGG + chr7_1:7868535-7868554 None:intergenic 45.0%
! ACTCCACCATGCTGATTACT+GGG + chr7_1:7869212-7869231 None:intergenic 45.0%
TGTTACGCATGCACACAAGT+TGG - chr7_1:7869231-7869250 Msa1007980:intron 45.0%
! ACTGCTCTTGCGAATTTTCC+GGG + chr7_1:7869354-7869373 None:intergenic 45.0%
GACAGCGCGTAGAAAAACAA+CGG + chr7_1:7869489-7869508 None:intergenic 45.0%
TCGCCGTGTTTGTATATGGA+TGG - chr7_1:7869525-7869544 Msa1007980:intron 45.0%
CCGTGTTTGTATATGGATGG+TGG - chr7_1:7869528-7869547 Msa1007980:intron 45.0%
TGGTTCACATGTTGTCTCTC+CGG - chr7_1:7870307-7870326 Msa1007980:intron 45.0%
!!! TTTGCAGGTTGTGTTTTGGC+TGG - chr7_1:7871645-7871664 Msa1007980:intron 45.0%
GCTACATCTTTGGCACCATT+TGG - chr7_1:7871800-7871819 Msa1007980:intron 45.0%
ACATCTTTGGCACCATTTGG+TGG - chr7_1:7871803-7871822 Msa1007980:intron 45.0%
CATCTTTGGCACCATTTGGT+GGG - chr7_1:7871804-7871823 Msa1007980:intron 45.0%
! ATCTTTGGCACCATTTGGTG+GGG - chr7_1:7871805-7871824 Msa1007980:intron 45.0%
GTTGTTGCCATGTGACTGAA+AGG - chr7_1:7871939-7871958 Msa1007980:intron 45.0%
TAGCAAAAAAAAGGGCAGCC+CGG + chr7_1:7872083-7872102 None:intergenic 45.0%
TTCTTTGGCATGTTCAGAGG+AGG - chr7_1:7872271-7872290 Msa1007980:intron 45.0%
GGATTTCCAATCGTTCCTTC+TGG + chr7_1:7872317-7872336 None:intergenic 45.0%
GGAACGATTGGAAATCCATG+TGG - chr7_1:7872320-7872339 Msa1007980:intron 45.0%
ACGATTGGAAATCCATGTGG+TGG - chr7_1:7872323-7872342 Msa1007980:intron 45.0%
ATCGTTGAGTTTCCACCACA+TGG + chr7_1:7872338-7872357 None:intergenic 45.0%
! GTTGACGGACCGTACAAATA+TGG - chr7_1:7872383-7872402 Msa1007980:intron 45.0%
!! ATATGACAGGAAGTGCCCAT+TGG + chr7_1:7872415-7872434 None:intergenic 45.0%
AAGCTACCCTGGAGAACTTA+TGG + chr7_1:7872623-7872642 None:intergenic 45.0%
!! GCTGTTTTCATAAGCTACCC+TGG + chr7_1:7872634-7872653 None:intergenic 45.0%
CACTTCTAGCCAGTTACTTG+TGG + chr7_1:7872914-7872933 None:intergenic 45.0%
AGCATATGCATTGTACTCGC+TGG - chr7_1:7872940-7872959 Msa1007980:intron 45.0%
GTGAATGTGCGAGTTGTGAT+TGG + chr7_1:7873040-7873059 None:intergenic 45.0%
CTTGATCCAAAAATCGGCGA+TGG - chr7_1:7873174-7873193 Msa1007980:intron 45.0%
!!! ATCATCCCATCGCCGATTTT+TGG + chr7_1:7873183-7873202 None:intergenic 45.0%
GTAAATGTGTCGTGTGGGAT+CGG - chr7_1:7873206-7873225 Msa1007980:intron 45.0%
GGTATTCCTACATGCAGTCA+TGG - chr7_1:7873356-7873375 Msa1007980:intron 45.0%
TCTTTGCCATGACTGCATGT+AGG + chr7_1:7873365-7873384 None:intergenic 45.0%
TGAGATGTCGAGACATGGAA+TGG - chr7_1:7873400-7873419 Msa1007980:intron 45.0%
! GCATTTTGAACGGCAGAGAT+GGG - chr7_1:7873470-7873489 Msa1007980:CDS 45.0%
CATTTCATCTTCTCCTCCCA+TGG + chr7_1:7873499-7873518 None:intergenic 45.0%
CATGGGAGGAGAAGATGAAA+TGG - chr7_1:7873497-7873516 Msa1007980:CDS 45.0%
AAGACTTACCTGAGGGTTTG+AGG - chr7_1:7873529-7873548 Msa1007980:CDS 45.0%
TAATGAGGTCCAAGCAAAGG+TGG + chr7_1:7873569-7873588 None:intergenic 45.0%
ATGAACACCATCCTTGGTAC+GGG + chr7_1:7874002-7874021 None:intergenic 45.0%
CGAACAATGAACACCATCCT+TGG + chr7_1:7874008-7874027 None:intergenic 45.0%
AGGATGGTGTTCATTGTTCG+CGG - chr7_1:7874008-7874027 Msa1007980:CDS 45.0%
TAGGCGACGAACTACTTTCT+TGG - chr7_1:7874102-7874121 Msa1007980:intron 45.0%
CGAGATACTACTCGTCGAAT+TGG - chr7_1:7874282-7874301 Msa1007980:intron 45.0%
ACTCGTCGAATTGGAGAACA+TGG - chr7_1:7874291-7874310 Msa1007980:intron 45.0%
CTCGTCGAATTGGAGAACAT+GGG - chr7_1:7874292-7874311 Msa1007980:intron 45.0%
CTTATAGACGTTACAGGCAG+AGG - chr7_1:7874336-7874355 Msa1007980:intron 45.0%
TTATCCCTTACAGGAGTCAC+CGG + chr7_1:7874371-7874390 None:intergenic 45.0%
GTGACTCCTGTAAGGGATAA+TGG - chr7_1:7874371-7874390 Msa1007980:intron 45.0%
! ACTCCTGTAAGGGATAATGG+AGG - chr7_1:7874374-7874393 Msa1007980:intron 45.0%
GCAGAAATATATGGCCGATG+TGG + chr7_1:7874539-7874558 None:intergenic 45.0%
!!! AATTATTATAATATTTTTGT+GGG - chr7_1:7869801-7869820 Msa1007980:CDS 5.0%
!!! TATTTTTTGATTAAATAATA+TGG - chr7_1:7871168-7871187 Msa1007980:intron 5.0%
ACTGGTTACGCAACGTAGAG+TGG + chr7_1:7868261-7868280 None:intergenic 50.0%
! GTGTGACAGTGAAGAGCACA+TGG + chr7_1:7868394-7868413 None:intergenic 50.0%
AGAGAGTGAGTGAGAGGGTA+GGG + chr7_1:7868422-7868441 None:intergenic 50.0%
CGACAACCCAGTAATCAGCA+TGG - chr7_1:7869203-7869222 Msa1007980:CDS 50.0%
CAACCCAGTAATCAGCATGG+TGG - chr7_1:7869206-7869225 Msa1007980:intron 50.0%
! CACTCCACCATGCTGATTAC+TGG + chr7_1:7869213-7869232 None:intergenic 50.0%
ACAGTTGTCACCAACCCGAA+TGG - chr7_1:7869286-7869305 Msa1007980:intron 50.0%
CAGTTGTCACCAACCCGAAT+GGG - chr7_1:7869287-7869306 Msa1007980:intron 50.0%
TGGAACTAGATAGGAACCGG+CGG + chr7_1:7869319-7869338 None:intergenic 50.0%
GTTCCAATCCAAAACCGTCC+CGG - chr7_1:7869333-7869352 Msa1007980:intron 50.0%
!!! TTTCCGGGACGGTTTTGGAT+TGG + chr7_1:7869339-7869358 None:intergenic 50.0%
! CGAATTTTCCGGGACGGTTT+TGG + chr7_1:7869344-7869363 None:intergenic 50.0%
! CTCTTGCGAATTTTCCGGGA+CGG + chr7_1:7869350-7869369 None:intergenic 50.0%
AATTGCACGCGCTTGCTTCT+TGG + chr7_1:7869417-7869436 None:intergenic 50.0%
CGCTGTCTATAGGGAGAGAA+GGG - chr7_1:7869502-7869521 Msa1007980:intron 50.0%
AGGGTCGCCGTGTTTGTATA+TGG - chr7_1:7869521-7869540 Msa1007980:intron 50.0%
! TATGGATGGTGGTTTAGCGG+CGG - chr7_1:7869539-7869558 Msa1007980:intron 50.0%
TGGTTTAGCGGCGGTTGTTA+CGG - chr7_1:7869548-7869567 Msa1007980:intron 50.0%
TTGGATGTGGGAAACTCGTG+TGG - chr7_1:7869658-7869677 Msa1007980:CDS 50.0%
TGGATGTGGGAAACTCGTGT+GGG - chr7_1:7869659-7869678 Msa1007980:CDS 50.0%
ACATGTTGTCTCTCCGGTGT+TGG - chr7_1:7870313-7870332 Msa1007980:intron 50.0%
GAGTCCAAATCCCCACCAAA+TGG + chr7_1:7871818-7871837 None:intergenic 50.0%
CCTGTGACCTTTCAGTCACA+TGG + chr7_1:7871949-7871968 None:intergenic 50.0%
CCATGTGACTGAAAGGTCAC+AGG - chr7_1:7871946-7871965 Msa1007980:intron 50.0%
AAGGTCACAGGTTCAAGTCC+TGG - chr7_1:7871958-7871977 Msa1007980:intron 50.0%
! AAAATGGTGGGACTCCTTCC+CGG - chr7_1:7872029-7872048 Msa1007980:intron 50.0%
CTAAAGTTCCCGCATACGCA+GGG + chr7_1:7872056-7872075 None:intergenic 50.0%
ACTAAAGTTCCCGCATACGC+AGG + chr7_1:7872057-7872076 None:intergenic 50.0%
ATGCGGGAACTTTAGTGCAC+CGG - chr7_1:7872061-7872080 Msa1007980:intron 50.0%
! TATAGGTTGCTGGAGGGTGT+TGG - chr7_1:7872177-7872196 Msa1007980:intron 50.0%
CTTGACAGCCAAGGAATTGC+TGG + chr7_1:7872438-7872457 None:intergenic 50.0%
! TTTGGGGTTTGATGACCCTC+AGG - chr7_1:7872474-7872493 Msa1007980:intron 50.0%
GATGTCGAGACATGGAATGG+TGG - chr7_1:7873403-7873422 Msa1007980:intron 50.0%
!! GAGACATGGAATGGTGGATG+AGG - chr7_1:7873409-7873428 Msa1007980:intron 50.0%
!! ACATGGAATGGTGGATGAGG+AGG - chr7_1:7873412-7873431 Msa1007980:intron 50.0%
! GGCATTTTGAACGGCAGAGA+TGG - chr7_1:7873469-7873488 Msa1007980:CDS 50.0%
! TTTTGAACGGCAGAGATGGG+CGG - chr7_1:7873473-7873492 Msa1007980:CDS 50.0%
ATGTCTCTCCTCAAACCCTC+AGG + chr7_1:7873540-7873559 None:intergenic 50.0%
! CTAAGAAACCTCCTGGTTCG+AGG + chr7_1:7874085-7874104 None:intergenic 50.0%
CTCGAACCAGGAGGTTTCTT+AGG - chr7_1:7874083-7874102 Msa1007980:intron 50.0%
! TTCGACGCCCTTTTATCGAC+CGG - chr7_1:7874129-7874148 Msa1007980:intron 50.0%
CTGGAAGCCGGTCGATAAAA+GGG + chr7_1:7874139-7874158 None:intergenic 50.0%
ACAAATGTGGCTGAGGAAGC+TGG + chr7_1:7874158-7874177 None:intergenic 50.0%
GTGCCTCCATTATCCCTTAC+AGG + chr7_1:7874380-7874399 None:intergenic 50.0%
!! ATAATGGAGGCACTGAGCGT+AGG - chr7_1:7874387-7874406 Msa1007980:intron 50.0%
GAGAGAGTGAGTGAGAGGGT+AGG + chr7_1:7868423-7868442 None:intergenic 55.0%
CTAGGGAGAGAGGAGAAGGT+GGG + chr7_1:7868517-7868536 None:intergenic 55.0%
GTACCTAGGGAGAGAGGAGA+AGG + chr7_1:7868521-7868540 None:intergenic 55.0%
TGGATGGTACCTAGGGAGAG+AGG + chr7_1:7868527-7868546 None:intergenic 55.0%
TGGGTTGTCGTCTGCTGAGA+CGG + chr7_1:7869193-7869212 None:intergenic 55.0%
ACAACTGTCTGCACAGCTGG+TGG + chr7_1:7869274-7869293 None:intergenic 55.0%
GTGACAACTGTCTGCACAGC+TGG + chr7_1:7869277-7869296 None:intergenic 55.0%
ATCCAACCGCGCGTTGTTGT+TGG - chr7_1:7869437-7869456 Msa1007980:intron 55.0%
GCGCTGTCTATAGGGAGAGA+AGG - chr7_1:7869501-7869520 Msa1007980:intron 55.0%
TTTAGCGGCGGTTGTTACGG+TGG - chr7_1:7869551-7869570 Msa1007980:intron 55.0%
CACATGTGTGTGGGGCTGTA+GGG + chr7_1:7870733-7870752 None:intergenic 55.0%
TCACATGTGTGTGGGGCTGT+AGG + chr7_1:7870734-7870753 None:intergenic 55.0%
! GGCACCATTTGGTGGGGATT+TGG - chr7_1:7871811-7871830 Msa1007980:intron 55.0%
CCAAAGCTCCCCCTCTAACT+TGG + chr7_1:7871907-7871926 None:intergenic 55.0%
CCAAGTTAGAGGGGGAGCTT+TGG - chr7_1:7871904-7871923 Msa1007980:intron 55.0%
TGCGGGAACTTTAGTGCACC+GGG - chr7_1:7872062-7872081 Msa1007980:intron 55.0%
GCAGCTGAGATGTCGAGACA+TGG - chr7_1:7873395-7873414 Msa1007980:intron 55.0%
!! TGGAATGGTGGATGAGGAGG+AGG - chr7_1:7873415-7873434 Msa1007980:intron 55.0%
CATCAAGCGCCACCTTTGCT+TGG - chr7_1:7873557-7873576 Msa1007980:CDS 55.0%
GAGAAGGAGATCCCGTACCA+AGG - chr7_1:7873988-7874007 Msa1007980:CDS 55.0%
AGGAGATCCCGTACCAAGGA+TGG - chr7_1:7873992-7874011 Msa1007980:CDS 55.0%
GCAACTAGTGTCCTCGAACC+AGG - chr7_1:7874071-7874090 Msa1007980:CDS 55.0%
ACTAGTGTCCTCGAACCAGG+AGG - chr7_1:7874074-7874093 Msa1007980:CDS 55.0%
TCGTCGCCTAAGAAACCTCC+TGG + chr7_1:7874092-7874111 None:intergenic 55.0%
!! GGTCGATAAAAGGGCGTCGA+AGG + chr7_1:7874130-7874149 None:intergenic 55.0%
GCTGGAAGCCGGTCGATAAA+AGG + chr7_1:7874140-7874159 None:intergenic 55.0%
CGTTACAGGCAGAGGACTAG+AGG - chr7_1:7874344-7874363 Msa1007980:intron 55.0%
AGGTCCGGTGACTCCTGTAA+GGG - chr7_1:7874364-7874383 Msa1007980:intron 55.0%
GAGAGAGGAGAAGGTGGGCA+TGG + chr7_1:7868512-7868531 None:intergenic 60.0%
CCTAGGGAGAGAGGAGAAGG+TGG + chr7_1:7868518-7868537 None:intergenic 60.0%
CCACCTTCTCCTCTCTCCCT+AGG - chr7_1:7868515-7868534 Msa1007980:three_prime_UTR 60.0%
GGTGACAGCAGTGATGACCC+TGG - chr7_1:7869162-7869181 Msa1007980:CDS 60.0%
CTGCTGAGACGGCAACTCCA+GGG + chr7_1:7869182-7869201 None:intergenic 60.0%
TCTGCTGAGACGGCAACTCC+AGG + chr7_1:7869183-7869202 None:intergenic 60.0%
CAGCTGGTGGAGTGGAACAC+TGG + chr7_1:7869261-7869280 None:intergenic 60.0%
TGTCTGCACAGCTGGTGGAG+TGG + chr7_1:7869269-7869288 None:intergenic 60.0%
GGTTGTTACGGTGGCGCGTA+CGG - chr7_1:7869560-7869579 Msa1007980:intron 60.0%
! GAGGGGGAGCTTTGGTGCAA+CGG - chr7_1:7871912-7871931 Msa1007980:intron 60.0%
TGGCTGAGGAAGCTGGAAGC+CGG + chr7_1:7874151-7874170 None:intergenic 60.0%
CAGGCAGAGGACTAGAGGTC+CGG - chr7_1:7874349-7874368 Msa1007980:intron 60.0%
GAGGTCCGGTGACTCCTGTA+AGG - chr7_1:7874363-7874382 Msa1007980:intron 60.0%
CGGACGCTTCCCATTCGGGT+TGG + chr7_1:7869299-7869318 None:intergenic 65.0%
ACCGGCGGACGCTTCCCATT+CGG + chr7_1:7869304-7869323 None:intergenic 65.0%
CGCCAACAACAACGCGCGGT+TGG + chr7_1:7869442-7869461 None:intergenic 65.0%
CACGCGCCAACAACAACGCG+CGG + chr7_1:7869446-7869465 None:intergenic 65.0%
! GCGCGTTGTTGTTGGCGCGT+GGG - chr7_1:7869445-7869464 Msa1007980:intron 65.0%
! CGCGTTGTTGTTGGCGCGTG+GGG - chr7_1:7869446-7869465 Msa1007980:intron 65.0%
TGTTACGGTGGCGCGTACGG+TGG - chr7_1:7869563-7869582 Msa1007980:intron 65.0%
! GGCGCGTACGGTGGTTGATG+CGG - chr7_1:7869572-7869591 Msa1007980:intron 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr7_1:7872044-7872063 Msa1007980:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr7_1:7872045-7872064 Msa1007980:intron 65.0%
TTCCCGCATACGCAGGGTCC+GGG + chr7_1:7872050-7872069 None:intergenic 65.0%
GTTCCCGCATACGCAGGGTC+CGG + chr7_1:7872051-7872070 None:intergenic 65.0%
CCGGCGGACGCTTCCCATTC+GGG + chr7_1:7869303-7869322 None:intergenic 70.0%
!! CCCGAATGGGAAGCGTCCGC+CGG - chr7_1:7869300-7869319 Msa1007980:intron 70.0%
! CGCGCGTTGTTGTTGGCGCG+TGG - chr7_1:7869444-7869463 Msa1007980:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr7_1:7872046-7872065 None:intergenic 70.0%
CGTGTGGGATCGGCGACTGC+CGG - chr7_1:7873216-7873235 Msa1007980:intron 70.0%
ACGGCAGAGATGGGCGGCCA+TGG - chr7_1:7873479-7873498 Msa1007980:CDS 70.0%
CGGCAGAGATGGGCGGCCAT+GGG - chr7_1:7873480-7873499 Msa1007980:CDS 70.0%
CAGAGATGGGCGGCCATGGG+AGG - chr7_1:7873483-7873502 Msa1007980:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7868217 7874987 7868217 ID=Msa1007980;Name=Msa1007980
chr7_1 mRNA 7868217 7874987 7868217 ID=Msa1007980-mRNA-1;Parent=Msa1007980;Name=Msa1007980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=294|1|1|1|0.75|0.77|9|492|711
chr7_1 exon 7868217 7868692 7868217 ID=Msa1007980-mRNA-1:exon:2349;Parent=Msa1007980-mRNA-1
chr7_1 exon 7868722 7869223 7868722 ID=Msa1007980-mRNA-1:exon:2348;Parent=Msa1007980-mRNA-1
chr7_1 exon 7869347 7869433 7869347 ID=Msa1007980-mRNA-1:exon:2347;Parent=Msa1007980-mRNA-1
chr7_1 exon 7869611 7869847 7869611 ID=Msa1007980-mRNA-1:exon:2346;Parent=Msa1007980-mRNA-1
chr7_1 exon 7870205 7870316 7870205 ID=Msa1007980-mRNA-1:exon:2345;Parent=Msa1007980-mRNA-1
chr7_1 exon 7870709 7871022 7870709 ID=Msa1007980-mRNA-1:exon:2344;Parent=Msa1007980-mRNA-1
chr7_1 exon 7871337 7871552 7871337 ID=Msa1007980-mRNA-1:exon:2343;Parent=Msa1007980-mRNA-1
chr7_1 exon 7873440 7874097 7873440 ID=Msa1007980-mRNA-1:exon:2342;Parent=Msa1007980-mRNA-1
chr7_1 exon 7874668 7874987 7874668 ID=Msa1007980-mRNA-1:exon:2341;Parent=Msa1007980-mRNA-1
chr7_1 five_prime_UTR 7874694 7874987 7874694 ID=Msa1007980-mRNA-1:five_prime_utr;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7874668 7874693 7874668 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7873440 7874097 7873440 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7871337 7871552 7871337 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7870709 7871022 7870709 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7870205 7870316 7870205 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7869611 7869847 7869611 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7869347 7869433 7869347 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 CDS 7868738 7869223 7868738 ID=Msa1007980-mRNA-1:cds;Parent=Msa1007980-mRNA-1
chr7_1 three_prime_UTR 7868722 7868737 7868722 ID=Msa1007980-mRNA-1:three_prime_utr;Parent=Msa1007980-mRNA-1
chr7_1 three_prime_UTR 7868217 7868692 7868217 ID=Msa1007980-mRNA-1:three_prime_utr;Parent=Msa1007980-mRNA-1
Gene Sequence

>Msa1007980

ATGCCCACCTTCTCCTCTCTCCCTAGGTGGATTGGTGGAAAATTCTTGGGAAGGAATCCTAGCAACACAATCAACAACGTTGGTGACAGCAGTGATGACCCTGGAGTTGCCGTCTCAGCAGACGACAACCCAGTAATCAGCATGGTGGAGTGTTACGCATGCACACAAGTTGGTGTGCCAGTGTTCCACTCCACCAGCTGTGCAGACAGTTGTCACCAACCCGAATGGGAAGCGTCCGCCGGTTCCTATCTAGTTCCAATCCAAAACCGTCCCGGAAAATTCGCAAGAGCAGTATCAAAGCCAAATTGGGGAGTTTTAGGCAAAGTATTAGATCCAAGAAGCAAGCGCGTGCAATTATCCAACCGCGCGTTGTTGTTGGCGCGTGGGGTTGCTCTAGCTATTGATCCGTTGTTTTTCTACGCGCTGTCTATAGGGAGAGAAGGGTCGCCGTGTTTGTATATGGATGGTGGTTTAGCGGCGGTTGTTACGGTGGCGCGTACGGTGGTTGATGCGGTGCATTTGTTTCATGTTTGGTTGCAGTTTAGATTAGCGTATGTGTCGAGAGAATCACTTGTTGTTGGATGTGGGAAACTCGTGTGGGATGCACGTGCCATTGCTTCTCATTATATGAGATCTTTCAAAGGTTTTTGGTTTGATGTTTTTGTTATTCTTCCTGTTCCTCAGGTTGTGTTTTGGCTGGTAGTACCAAAATTGATAAGAGAAGAGAGAATTAAAATCATTATGACAACACTGCTATTGATTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGCATATCTATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGATTTGGACTCAATCTCATTGCTTATTTCATTGCTTCTCACGTTGCTGGAGGGTGTTGGTATGTTCTTGCGATTCAACGCGTTGCATCATGCCTTCAACAGCAGTGTGAAAGAACTATTGGATGCAATCTTTCTTTGGCATGTTCAGAGGAGGTATGCTATAAGTCTTTGTTACCAGAAGGAACGATTGGAAATCCATGTGGTGGAAACTCAACGATGATGTCGAAGCCTATGTGTTTAGATGTTGACGGACCGTACAAATATGGGATTTACCAATGGGCACTTCCTGTCATATCCAGCAATTCCTTGGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTTAGCATATGCATTGTACTCGCTGGACTATTACTTTTCACTTTGTTGATCGGAAACATCCAGGTATTCCTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGAGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCGTCCCGATTAAGACAAAGAGTTCGGCATTTTGAACGGCAGAGATGGGCGGCCATGGGAGGAGAAGATGAAATGGAACTGATCAAAGACTTACCTGAGGGTTTGAGGAGAGACATCAAGCGCCACCTTTGCTTGGACCTCATTAAAAAGGTACCATTGTTTCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCTTTAGTCTTCTCTCGAGATGAAAAGATAATTAGAGAAGGAGATCCCGTACCAAGGATGGTGTTCATTGTTCGCGGACGCATAAAGCGAAACCAAAGTCTAAGCAAAGGCATTGTAGCAACTAGTGTCCTCGAACCAGGAGGTTTCTTAGGCGACGAACTACTTTCTTGGTGCCTTCGACGCCCTTTTATCGACCGGCTTCCAGCTTCCTCAGCCACATTTGTTTGTCTTGAATCAACTGAAGCATTCGGTCTTGATGCTCAAAACTTAAGGTACATAACCGATCATTTCCGGTACAAATTTGCAAATGAGAGGCTAAAGAGAACGGCGAGATACTACTCGTCGAATTGGAGAACATGGGCTGCAGTTAACATTCAACTTGCTTATAGACGTTACAGGCAGAGGACTAGAGGTCCGGTGACTCCTGTAAGGGATAATGGAGGCACTGAGCGTAGGCTTATGCAATACGCTGCAATGTTCATGTCAATTAGGCCACATGATCATCTTGAATGA
Protein sequence

>Msa1007980

MPTFSSLPRWIGGKFLGRNPSNTINNVGDSSDDPGVAVSADDNPVISMVECYACTQVGVPVFHSTSCADSCHQPEWEASAGSYLVPIQNRPGKFARAVSKPNWGVLGKVLDPRSKRVQLSNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAVVTVARTVVDAVHLFHVWLQFRLAYVSRESLVVGCGKLVWDARAIASHYMRSFKGFWFDVFVILPVPQVVFWLVVPKLIREERIKIIMTTLLLIFLFQFLPKVYHSISMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQQCERTIGCNLSLACSEEVCYKSLLPEGTIGNPCGGNSTMMSKPMCLDVDGPYKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLAGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRHLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSRDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGIVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESTEAFGLDAQNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRQRTRGPVTPVRDNGGTERRLMQYAAMFMSIRPHDHLE*