AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123340 MtrunA17_Chr7g0218341 100.000 263 0 0 1 263 448 710 0.0 545
Msa1123340 MtrunA17_Chr8g0360821 57.463 268 102 2 2 259 401 666 9.35e-108 326
Msa1123340 MtrunA17_Chr2g0318561 55.019 269 109 2 2 260 224 490 1.70e-103 309
Msa1123340 MtrunA17_Chr2g0305771 45.495 222 118 2 9 228 387 607 5.44e-60 201
Msa1123340 MtrunA17_Chr3g0139071 43.103 232 129 2 9 238 417 647 6.77e-60 201
Msa1123340 MtrunA17_Chr4g0001481 43.243 222 123 2 6 225 441 661 6.44e-58 196
Msa1123340 MtrunA17_Chr3g0126541 42.667 225 126 2 6 228 414 637 1.45e-57 195
Msa1123340 MtrunA17_Chr7g0275581 42.035 226 129 1 2 225 415 640 1.49e-57 195
Msa1123340 MtrunA17_Chr1g0158861 42.478 226 125 4 6 228 416 639 3.63e-57 194
Msa1123340 MtrunA17_Chr4g0073941 43.694 222 122 2 6 225 436 656 3.73e-57 194
Msa1123340 MtrunA17_Chr3g0125651 41.485 229 131 2 2 228 372 599 1.47e-56 192
Msa1123340 MtrunA17_Chr1g0181121 44.545 220 119 2 9 226 380 598 8.49e-55 187
Msa1123340 MtrunA17_Chr4g0028861 42.793 222 122 4 13 231 464 683 1.11e-54 187
Msa1123340 MtrunA17_Chr2g0326871 40.870 230 131 4 13 239 417 644 3.40e-54 186
Msa1123340 MtrunA17_Chr8g0347121 36.719 256 129 2 6 228 398 653 2.29e-52 181
Msa1123340 MtrunA17_Chr7g0228181 40.090 222 130 2 9 228 387 607 5.86e-52 179
Msa1123340 MtrunA17_Chr6g0481021 37.815 238 133 5 3 230 460 692 2.79e-41 150
Msa1123340 MtrunA17_Chr6g0480671 38.494 239 131 5 1 228 522 755 1.63e-36 137
Msa1123340 MtrunA17_Chr6g0480851 35.102 245 142 5 6 238 517 756 1.37e-32 125
Msa1123340 MtrunA17_Chr6g0480781 34.034 238 140 5 3 228 499 731 2.42e-32 125
Msa1123340 MtrunA17_Chr6g0480771 32.773 238 138 7 4 227 24 253 5.89e-28 108
Msa1123340 MtrunA17_Chr5g0395421 34.259 216 125 5 3 206 145 355 1.98e-27 108
Msa1123340 MtrunA17_Chr6g0480741 31.330 233 143 5 10 230 449 676 2.06e-26 107
Msa1123340 MtrunA17_Chr6g0480681 31.727 249 148 7 4 238 469 709 4.07e-24 101
Msa1123340 MtrunA17_Chr6g0480841 33.503 197 112 5 44 227 2 192 1.68e-22 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123340 AT5G15410.2 78.598 271 50 2 1 263 455 725 1.91e-150 437
Msa1123340 AT5G15410.1 78.598 271 50 2 1 263 456 726 3.20e-150 437
Msa1123340 AT5G54250.2 56.343 268 105 2 2 259 422 687 2.29e-106 323
Msa1123340 AT5G54250.1 56.343 268 105 2 2 259 422 687 2.29e-106 323
Msa1123340 AT5G54250.4 56.343 268 105 2 2 259 422 687 2.29e-106 323
Msa1123340 AT5G54250.3 54.851 268 104 3 2 259 422 682 1.18e-100 308
Msa1123340 AT1G19780.2 43.111 225 125 2 6 228 227 450 5.75e-61 201
Msa1123340 AT1G15990.1 43.556 225 124 2 6 228 432 655 1.96e-60 203
Msa1123340 AT2G23980.6 44.053 227 124 2 6 230 417 642 4.77e-60 202
Msa1123340 AT2G24610.1 44.595 222 120 2 9 228 414 634 5.53e-60 202
Msa1123340 AT2G23980.9 44.053 227 124 2 6 230 444 669 5.74e-60 202
Msa1123340 AT2G23980.10 44.053 227 124 2 6 230 444 669 5.74e-60 202
Msa1123340 AT2G23980.1 44.053 227 124 2 6 230 444 669 5.74e-60 202
Msa1123340 AT2G23980.4 44.053 227 124 2 6 230 444 669 5.74e-60 202
Msa1123340 AT2G23980.5 44.053 227 124 2 6 230 444 669 5.74e-60 202
Msa1123340 AT2G23980.3 44.053 227 124 2 6 230 467 692 8.66e-60 202
Msa1123340 AT2G23980.2 44.053 227 124 2 6 230 467 692 8.66e-60 202
Msa1123340 AT2G23980.8 44.053 227 124 2 6 230 467 692 8.66e-60 202
Msa1123340 AT2G23980.7 44.053 227 124 2 6 230 467 692 8.66e-60 202
Msa1123340 AT4G30560.5 43.172 227 126 2 6 230 417 642 9.30e-60 201
Msa1123340 AT4G30560.2 43.172 227 126 2 6 230 417 642 9.30e-60 201
Msa1123340 AT4G30560.3 43.172 227 126 2 6 230 417 642 9.30e-60 201
Msa1123340 AT4G30360.1 44.843 223 120 2 9 229 414 635 1.17e-59 201
Msa1123340 AT2G24610.2 44.595 222 120 2 9 228 429 649 1.27e-59 201
Msa1123340 AT4G30560.1 43.172 227 126 2 6 230 443 668 1.29e-59 201
Msa1123340 AT4G30560.4 43.172 227 126 2 6 230 443 668 1.29e-59 201
Msa1123340 AT1G19780.1 43.111 225 125 2 6 228 438 661 1.51e-59 201
Msa1123340 AT5G57940.3 43.612 227 125 2 6 230 421 646 1.61e-58 198
Msa1123340 AT5G57940.1 43.612 227 125 2 6 230 428 653 1.70e-58 198
Msa1123340 AT5G57940.2 43.612 227 125 2 6 230 428 653 1.70e-58 198
Msa1123340 AT5G53130.1 42.793 222 124 2 6 225 416 636 4.43e-57 194
Msa1123340 AT1G01340.1 41.921 229 130 2 2 228 394 621 5.09e-57 194
Msa1123340 AT1G01340.2 41.921 229 130 2 2 228 399 626 6.56e-57 193
Msa1123340 AT4G01010.1 37.778 270 151 4 2 255 400 668 6.79e-57 193
Msa1123340 AT4G01010.2 37.778 270 151 4 2 255 400 668 6.79e-57 193
Msa1123340 AT2G28260.2 43.946 223 120 4 9 228 364 584 4.54e-56 190
Msa1123340 AT2G28260.1 43.946 223 120 4 9 228 404 624 5.83e-56 190
Msa1123340 AT3G48010.1 41.921 229 130 2 2 228 383 610 6.80e-56 191
Msa1123340 AT5G14870.1 39.224 232 138 2 12 241 385 615 1.37e-54 187
Msa1123340 AT2G46430.1 40.000 225 130 4 6 228 407 628 2.90e-49 172
Msa1123340 AT2G46430.2 40.000 225 130 4 6 228 407 628 2.90e-49 172
Msa1123340 AT2G46450.2 34.363 259 150 7 6 255 342 589 2.49e-39 144
Msa1123340 AT2G46450.3 34.363 259 150 7 6 255 329 576 3.08e-39 144
Msa1123340 AT2G46450.4 34.363 259 150 7 6 255 365 612 3.63e-39 144
Msa1123340 AT2G46450.1 34.363 259 150 7 6 255 365 612 3.63e-39 144
Msa1123340 AT3G17690.1 37.021 235 132 6 3 228 488 715 3.82e-35 133
Msa1123340 AT3G17700.1 37.500 240 135 5 6 235 524 758 1.68e-34 131
Msa1123340 AT2G46440.2 36.444 225 138 4 6 228 187 408 2.70e-33 125
Msa1123340 AT2G46440.1 36.444 225 138 4 6 228 365 586 1.68e-32 125
Msa1123340 AT3G17700.2 40.523 153 86 3 6 158 524 671 1.02e-25 106
Msa1123340 AT3G17690.2 40.397 151 83 3 3 152 488 632 1.03e-25 106

Find 95 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGAACTCTTTGTCTTAAT+CGG 0.243695 7_3:-74228268 None:intergenic
AAAGAGAGAAATAGTGATTC+AGG 0.258928 7_3:+74230036 Msa1123340:three_prime_UTR
GTGCCTCCATTATCCCTTAC+AGG 0.286550 7_3:-74229667 None:intergenic
GGTACATAACCGATCATTTC+CGG 0.286930 7_3:+74229515 Msa1123340:CDS
AAGTACAAGGTAGCCTTAAA+AGG 0.304353 7_3:-74230113 None:intergenic
GGTCAATAAACGGACGTCTT+AGG 0.308093 7_3:-74229417 None:intergenic
TTGCTTGGACCTCATCAAAA+AGG 0.331377 7_3:+74228391 Msa1123340:CDS
CCGCAAAATGCAGAAATATA+TGG 0.344454 7_3:-74229805 None:intergenic
CTGCAATGTTCATGTCAATT+AGG 0.348025 7_3:+74229713 Msa1123340:CDS
CAATGCCTTTGCTTAGACTT+TGG 0.354479 7_3:-74229336 None:intergenic
TAGGCGATGAACTACTTTCT+TGG 0.358512 7_3:+74229392 Msa1123340:CDS
GTGACTCCTGTAAGGGATAA+TGG 0.371039 7_3:+74229661 Msa1123340:CDS
AACTTGCTTATAGACGTTAC+AGG 0.387453 7_3:+74229620 Msa1123340:CDS
ATCTTGAACCCACAAGTAAC+TGG 0.395487 7_3:+74227721 Msa1123340:five_prime_UTR
CGAGATACTACTCGTCGAAT+TGG 0.400059 7_3:+74229572 Msa1123340:CDS
GGTACCATTGTTTCACAACT+TGG 0.414666 7_3:+74229059 Msa1123340:intron
CATCAAGCGCCACCTTTGCT+TGG 0.417719 7_3:+74228376 Msa1123340:CDS
AAGACTTACCTGAGGGTTTG+AGG 0.427919 7_3:+74228348 Msa1123340:CDS
ACAAATGTGGCCGAGGAAGC+TGG 0.430790 7_3:-74229445 None:intergenic
CTCGAACCAGGAGGTTTCTT+AGG 0.431143 7_3:+74229373 Msa1123340:CDS
CCGAACTCTTTGTCTTAATC+GGG 0.442264 7_3:-74228267 None:intergenic
TAAATAAATAAAACCAATCA+TGG 0.445625 7_3:-74229895 None:intergenic
ATGATCATCTTGAATGATGA+AGG 0.447805 7_3:+74229740 Msa1123340:exon
GATAAACTTGTGTCCATGAT+TGG 0.450306 7_3:+74229882 Msa1123340:three_prime_UTR
CCCGATTAAGACAAAGAGTT+CGG 0.451229 7_3:+74228267 Msa1123340:CDS
GAGGTCCGGTGACTCCTGTA+AGG 0.454750 7_3:+74229653 Msa1123340:CDS
TTCTTGACAACATCTGTGAC+AGG 0.460022 7_3:+74229091 Msa1123340:CDS
CACTTCTAGCCAGTTACTTG+TGG 0.461652 7_3:-74227730 None:intergenic
CTTGAATCAACTGAAGCATT+CGG 0.467071 7_3:+74229472 Msa1123340:CDS
TCATCTCGAGAGAAGACTAA+AGG 0.472290 7_3:-74229120 None:intergenic
AGTCTTCTCTCGAGATGAAA+AGG 0.477345 7_3:+74229125 Msa1123340:CDS
TAACAATTTCAAAGGTCTGA+AGG 0.477905 7_3:-74229974 None:intergenic
ACTTCTAGCCAGTTACTTGT+GGG 0.480880 7_3:-74227729 None:intergenic
CTTATAGACGTTACAGGCAG+AGG 0.484790 7_3:+74229626 Msa1123340:CDS
ACGTCAGAGATGGGCGGCCA+TGG 0.485284 7_3:+74228298 Msa1123340:CDS
AGCATATGCATTGTACTCGC+TGG 0.487171 7_3:+74227759 Msa1123340:five_prime_UTR
CGAACAATGAACACCATCCT+TGG 0.487181 7_3:-74229295 None:intergenic
ATGGGCGGCCATGGGAGGAG+AGG 0.495829 7_3:+74228307 Msa1123340:CDS
AACAATTTCAAAGGTCTGAA+GGG 0.501465 7_3:-74229973 None:intergenic
CATCTCATCCTCTCCTCCCA+TGG 0.505028 7_3:-74228315 None:intergenic
ACTTAGTGAATAAATAATGA+AGG 0.506368 7_3:+74230132 Msa1123340:three_prime_UTR
GCTGGAAGCCGGTCAATAAA+CGG 0.507628 7_3:-74229427 None:intergenic
TGACCGGCTTCCAGCTTCCT+CGG 0.516912 7_3:+74229435 Msa1123340:CDS
CGTCAGAGATGGGCGGCCAT+GGG 0.522711 7_3:+74228299 Msa1123340:CDS
TGGAATGGTGGATGAGGAGG+AGG 0.523089 7_3:+74228234 Msa1123340:CDS
TCTCATTTGCAAATTTGTAC+CGG 0.523525 7_3:-74229534 None:intergenic
TAAGACGTCCGTTTATTGAC+CGG 0.524457 7_3:+74229419 Msa1123340:CDS
TTTGTTGATCGGAAACATCC+AGG 0.527636 7_3:+74227797 Msa1123340:five_prime_UTR
CTAAGAAACCTCCTGGTTCG+AGG 0.530685 7_3:-74229372 None:intergenic
TGGCCGAGGAAGCTGGAAGC+CGG 0.532343 7_3:-74229438 None:intergenic
TTAAATTGCAATTGTGGTCG+CGG 0.538224 7_3:-74229851 None:intergenic
TCATCGCCTAAGAAACCTCC+TGG 0.546060 7_3:-74229379 None:intergenic
GCAACTAGTGTCCTCGAACC+AGG 0.546742 7_3:+74229361 Msa1123340:CDS
ATGTCTCTCCTCAAACCCTC+AGG 0.547362 7_3:-74228356 None:intergenic
AGGATGGTGTTCATTGTTCG+CGG 0.551595 7_3:+74229298 Msa1123340:CDS
ATGAACACCATCCTTGGTAC+AGG 0.552013 7_3:-74229289 None:intergenic
ACTCGTCGAATTGGAGAACA+TGG 0.552999 7_3:+74229581 Msa1123340:CDS
TCTTTGCCATGACTGCATGT+AGG 0.558556 7_3:-74228181 None:intergenic
CAGGCAGAGGACTAGAGGTC+CGG 0.559424 7_3:+74229639 Msa1123340:CDS
TTATTTATTCACTAAGTACA+AGG 0.563076 7_3:-74230126 None:intergenic
CAGAGATGGGCGGCCATGGG+AGG 0.571124 7_3:+74228302 Msa1123340:CDS
AAGACAAACAAATGTGGCCG+AGG 0.578636 7_3:-74229452 None:intergenic
GGTATTCCTACATGCAGTCA+TGG 0.581719 7_3:+74228175 Msa1123340:intron
GTCTTGATGCTCAAAACTTG+AGG 0.585851 7_3:+74229494 Msa1123340:CDS
CGTTACAGGCAGAGGACTAG+AGG 0.586315 7_3:+74229634 Msa1123340:CDS
AGGTGATCCTGTACCAAGGA+TGG 0.586464 7_3:+74229282 Msa1123340:CDS
GGTACAAATTTGCAAATGAG+AGG 0.592078 7_3:+74229536 Msa1123340:CDS
AAATTTGTACCGGAAATGAT+CGG 0.599973 7_3:-74229524 None:intergenic
CTTAGTGAATAAATAATGAA+GGG 0.604406 7_3:+74230133 Msa1123340:three_prime_UTR
TGATGAGGTCCAAGCAAAGG+TGG 0.605075 7_3:-74228385 None:intergenic
CATGGGAGGAGAGGATGAGA+TGG 0.605094 7_3:+74228316 Msa1123340:CDS
TCATCCAAGTTGTGAAACAA+TGG 0.606915 7_3:-74229063 None:intergenic
ACTCTTTGTCTTAATCGGGA+AGG 0.608162 7_3:-74228263 None:intergenic
ACATGGAATGGTGGATGAGG+AGG 0.614255 7_3:+74228231 Msa1123340:CDS
TTATCCCTTACAGGAGTCAC+CGG 0.615827 7_3:-74229658 None:intergenic
TGAGATGTCGTGACATGGAA+TGG 0.621051 7_3:+74228219 Msa1123340:CDS
CGAAACCAAAGTCTAAGCAA+AGG 0.623581 7_3:+74229331 Msa1123340:CDS
AAATGAGAGGCTAAAGAGAA+CGG 0.624073 7_3:+74229549 Msa1123340:CDS
GTGAAACAGATAATTAGAGA+AGG 0.624615 7_3:+74229262 Msa1123340:intron
ATAATGGAGGCACTGAGCGT+AGG 0.626496 7_3:+74229677 Msa1123340:CDS
AGGTCCGGTGACTCCTGTAA+GGG 0.632405 7_3:+74229654 Msa1123340:CDS
GTGACATGGAATGGTGGATG+AGG 0.635573 7_3:+74228228 Msa1123340:CDS
GCAGAAATATATGGCTGATG+TGG 0.636559 7_3:-74229796 None:intergenic
GCAGCTGAGATGTCGTGACA+TGG 0.637860 7_3:+74228214 Msa1123340:CDS
CTGATCAAAGACTTACCTGA+GGG 0.638121 7_3:+74228341 Msa1123340:CDS
CATCATTCAAGATGATCATG+TGG 0.648975 7_3:-74229736 None:intergenic
ATGGACACAAGTTTATCACA+TGG 0.655848 7_3:-74229876 None:intergenic
TCTTGACAACATCTGTGACA+GGG 0.672297 7_3:+74229092 Msa1123340:CDS
TGATTCAAGACAAACAAATG+TGG 0.676291 7_3:-74229458 None:intergenic
GAGAAGGTGATCCTGTACCA+AGG 0.698618 7_3:+74229278 Msa1123340:CDS
ACTGATCAAAGACTTACCTG+AGG 0.709178 7_3:+74228340 Msa1123340:CDS
CTCGTCGAATTGGAGAACAT+GGG 0.715220 7_3:+74229582 Msa1123340:CDS
GATGTCGTGACATGGAATGG+TGG 0.720965 7_3:+74228222 Msa1123340:CDS
ACTCCTGTAAGGGATAATGG+AGG 0.737690 7_3:+74229664 Msa1123340:CDS
ACTAGTGTCCTCGAACCAGG+AGG 0.746623 7_3:+74229364 Msa1123340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTGTAATAATAATGTAT+TGG - chr7_3:74228065-74228084 None:intergenic 10.0%
!!! TTATTTGATTTTTTATTTTG+GGG + chr7_3:74229915-74229934 Msa1123340:three_prime_UTR 10.0%
!!! TATTTTTGTTTTTAATAGAA+AGG - chr7_3:74230200-74230219 None:intergenic 10.0%
!! TTTCTATTAAAAACAAAAAT+AGG + chr7_3:74230199-74230218 Msa1123340:three_prime_UTR 10.0%
!! TTCTATTAAAAACAAAAATA+GGG + chr7_3:74230200-74230219 Msa1123340:three_prime_UTR 10.0%
!! TAAATAAATAAAACCAATCA+TGG - chr7_3:74229898-74229917 None:intergenic 15.0%
!!! TTTTCACATAAAATTTATTG+AGG - chr7_3:74229949-74229968 None:intergenic 15.0%
!!! TTTTCAAATAACAATTTCAA+AGG - chr7_3:74229985-74230004 None:intergenic 15.0%
!! AATCCAATAATAATCTACTT+CGG - chr7_3:74227826-74227845 None:intergenic 20.0%
!! AAGTAGATTATTATTGGATT+TGG + chr7_3:74227826-74227845 Msa1123340:intron 20.0%
!! AAAATACTAAACTTGAAAAC+TGG - chr7_3:74227924-74227943 None:intergenic 20.0%
!! TGTTAGATTAAGAAAGATAA+AGG + chr7_3:74228491-74228510 Msa1123340:intron 20.0%
!! TTATGAAATGATATAATAGC+AGG + chr7_3:74228522-74228541 Msa1123340:intron 20.0%
!!! ATATAGCTTGAATTATTTTG+AGG - chr7_3:74228639-74228658 None:intergenic 20.0%
!! TAGAATTCATCATGATTAAA+TGG + chr7_3:74228772-74228791 Msa1123340:intron 20.0%
!! TGATTAAATGGAATTCAATA+TGG + chr7_3:74228784-74228803 Msa1123340:intron 20.0%
!! GATTAAATGGAATTCAATAT+GGG + chr7_3:74228785-74228804 Msa1123340:intron 20.0%
!! GATACTAAATTAAACTCAAA+TGG - chr7_3:74228847-74228866 None:intergenic 20.0%
!!! ATTTGAACAATTTCCTTTTA+AGG + chr7_3:74230100-74230119 Msa1123340:three_prime_UTR 20.0%
!! TTATTTATTCACTAAGTACA+AGG - chr7_3:74230129-74230148 None:intergenic 20.0%
!! ACTTAGTGAATAAATAATGA+AGG + chr7_3:74230132-74230151 Msa1123340:three_prime_UTR 20.0%
!! CTTAGTGAATAAATAATGAA+GGG + chr7_3:74230133-74230152 Msa1123340:three_prime_UTR 20.0%
!!! TTACTTTTCACTTTGTTGAT+CGG + chr7_3:74227786-74227805 Msa1123340:five_prime_UTR 25.0%
! TATCCGAAGTAGATTATTAT+TGG + chr7_3:74227820-74227839 Msa1123340:intron 25.0%
! AATTTGACGAAAAACGTATT+TGG + chr7_3:74228692-74228711 Msa1123340:intron 25.0%
! AAGTTTAGGTAATGATTGAT+TGG + chr7_3:74228722-74228741 Msa1123340:intron 25.0%
! AAATCATTCCATGTAGAAAA+AGG + chr7_3:74229190-74229209 Msa1123340:intron 25.0%
! AAAGAATTAAAAAACCCTGA+TGG - chr7_3:74229229-74229248 None:intergenic 25.0%
!!! ATGGTTTTAAATTGCAATTG+TGG - chr7_3:74229860-74229879 None:intergenic 25.0%
! CTCATAAAAAATGAATGAAC+AGG - chr7_3:74230074-74230093 None:intergenic 25.0%
AATCTTGATCCAACAATTGA+CGG + chr7_3:74227990-74228009 Msa1123340:intron 30.0%
AACTGTTTCATACTCAAACA+TGG + chr7_3:74228123-74228142 Msa1123340:intron 30.0%
!! TGAGACTATTTCTACTATGA+AGG + chr7_3:74228154-74228173 Msa1123340:intron 30.0%
! TCTTTCTTACCTTTTTGATG+AGG - chr7_3:74228403-74228422 None:intergenic 30.0%
GAAATTTATCCATCTTCTTG+AGG - chr7_3:74228465-74228484 None:intergenic 30.0%
! TCTTTCTTTTGAATCGTGAA+TGG + chr7_3:74228580-74228599 Msa1123340:intron 30.0%
TATTTGGCTACACTAAGTTT+AGG + chr7_3:74228708-74228727 Msa1123340:intron 30.0%
TCAAACAGATACTACTTATC+AGG - chr7_3:74229037-74229056 None:intergenic 30.0%
ATAAGTAGTATCTGTTTGAC+AGG + chr7_3:74229038-74229057 Msa1123340:intron 30.0%
!! TTTGAAGTCCTTTTTCTACA+TGG - chr7_3:74229201-74229220 None:intergenic 30.0%
CTCTAATTATCTGTTTCACA+AGG - chr7_3:74229261-74229280 None:intergenic 30.0%
GTGAAACAGATAATTAGAGA+AGG + chr7_3:74229262-74229281 Msa1123340:intron 30.0%
TGATTCAAGACAAACAAATG+TGG - chr7_3:74229461-74229480 None:intergenic 30.0%
AAATTTGTACCGGAAATGAT+CGG - chr7_3:74229527-74229546 None:intergenic 30.0%
TCTCATTTGCAAATTTGTAC+CGG - chr7_3:74229537-74229556 None:intergenic 30.0%
ATGATCATCTTGAATGATGA+AGG + chr7_3:74229740-74229759 Msa1123340:exon 30.0%
!! CCATATATTTCTGCATTTTG+CGG + chr7_3:74229805-74229824 Msa1123340:three_prime_UTR 30.0%
AACAATTTCAAAGGTCTGAA+GGG - chr7_3:74229976-74229995 None:intergenic 30.0%
TAACAATTTCAAAGGTCTGA+AGG - chr7_3:74229977-74229996 None:intergenic 30.0%
AAAGAGAGAAATAGTGATTC+AGG + chr7_3:74230036-74230055 Msa1123340:three_prime_UTR 30.0%
AATAATCTACTTCGGATACC+TGG - chr7_3:74227818-74227837 None:intergenic 35.0%
! GTGACTTTTGGATCAAGAAT+AGG + chr7_3:74227894-74227913 Msa1123340:intron 35.0%
! ACTTTTGGATCAAGAATAGG+CGG + chr7_3:74227897-74227916 Msa1123340:intron 35.0%
ATTGCGAAAATGTATGGTGT+GGG + chr7_3:74228020-74228039 Msa1123340:intron 35.0%
! GTCGAATTTGTTTCATTTGC+AGG - chr7_3:74228432-74228451 None:intergenic 35.0%
ATCTTCTTGAGGCAACTTTA+CGG - chr7_3:74228454-74228473 None:intergenic 35.0%
AATAGCAGGTTATCAAATCC+AGG + chr7_3:74228536-74228555 Msa1123340:intron 35.0%
TCAGATTCACAATTTGAACC+TGG - chr7_3:74228557-74228576 None:intergenic 35.0%
CTAATTCAGTATGACGATTC+TGG - chr7_3:74228755-74228774 None:intergenic 35.0%
TCTCTAGTGTGTGTCTATTT+GGG - chr7_3:74228818-74228837 None:intergenic 35.0%
ATCTCTAGTGTGTGTCTATT+TGG - chr7_3:74228819-74228838 None:intergenic 35.0%
CAGATACTACTTATCAGGAA+AGG - chr7_3:74229032-74229051 None:intergenic 35.0%
TCATCCAAGTTGTGAAACAA+TGG - chr7_3:74229066-74229085 None:intergenic 35.0%
GACTTCAAAAATGTCCATCA+GGG + chr7_3:74229212-74229231 Msa1123340:intron 35.0%
! CTTGAATCAACTGAAGCATT+CGG + chr7_3:74229472-74229491 Msa1123340:CDS 35.0%
GGTACAAATTTGCAAATGAG+AGG + chr7_3:74229536-74229555 Msa1123340:CDS 35.0%
AAATGAGAGGCTAAAGAGAA+CGG + chr7_3:74229549-74229568 Msa1123340:CDS 35.0%
! AACTTGCTTATAGACGTTAC+AGG + chr7_3:74229620-74229639 Msa1123340:CDS 35.0%
CTGCAATGTTCATGTCAATT+AGG + chr7_3:74229713-74229732 Msa1123340:CDS 35.0%
CATCATTCAAGATGATCATG+TGG - chr7_3:74229739-74229758 None:intergenic 35.0%
CCGCAAAATGCAGAAATATA+TGG - chr7_3:74229808-74229827 None:intergenic 35.0%
TTAAATTGCAATTGTGGTCG+CGG - chr7_3:74229854-74229873 None:intergenic 35.0%
ATGGACACAAGTTTATCACA+TGG - chr7_3:74229879-74229898 None:intergenic 35.0%
GATAAACTTGTGTCCATGAT+TGG + chr7_3:74229882-74229901 Msa1123340:three_prime_UTR 35.0%
! AAGTACAAGGTAGCCTTAAA+AGG - chr7_3:74230116-74230135 None:intergenic 35.0%
ATCTTGAACCCACAAGTAAC+TGG + chr7_3:74227721-74227740 Msa1123340:five_prime_UTR 40.0%
ACTTCTAGCCAGTTACTTGT+GGG - chr7_3:74227732-74227751 None:intergenic 40.0%
TTTGTTGATCGGAAACATCC+AGG + chr7_3:74227797-74227816 Msa1123340:five_prime_UTR 40.0%
ATGAATGTGCGAGTTGTGAT+TGG - chr7_3:74227859-74227878 None:intergenic 40.0%
CATTCATGCAATCAGCACAT+TGG + chr7_3:74227872-74227891 Msa1123340:intron 40.0%
!! ATCAGCACATTGGTGACTTT+TGG + chr7_3:74227882-74227901 Msa1123340:intron 40.0%
TTGATCCAACAATTGACGGA+GGG + chr7_3:74227994-74228013 Msa1123340:intron 40.0%
GGGATGATTGCGAAAATGTA+TGG + chr7_3:74228014-74228033 Msa1123340:intron 40.0%
GATTGCGAAAATGTATGGTG+TGG + chr7_3:74228019-74228038 Msa1123340:intron 40.0%
ACTCTTTGTCTTAATCGGGA+AGG - chr7_3:74228266-74228285 None:intergenic 40.0%
CCGAACTCTTTGTCTTAATC+GGG - chr7_3:74228270-74228289 None:intergenic 40.0%
CCCGATTAAGACAAAGAGTT+CGG + chr7_3:74228267-74228286 Msa1123340:CDS 40.0%
GCCGAACTCTTTGTCTTAAT+CGG - chr7_3:74228271-74228290 None:intergenic 40.0%
! GCATTTTGAACGTCAGAGAT+GGG + chr7_3:74228289-74228308 Msa1123340:CDS 40.0%
ACTGATCAAAGACTTACCTG+AGG + chr7_3:74228340-74228359 Msa1123340:CDS 40.0%
CTGATCAAAGACTTACCTGA+GGG + chr7_3:74228341-74228360 Msa1123340:CDS 40.0%
! TTTTGATGAGGTCCAAGCAA+AGG - chr7_3:74228391-74228410 None:intergenic 40.0%
TTGCTTGGACCTCATCAAAA+AGG + chr7_3:74228391-74228410 Msa1123340:CDS 40.0%
GTAAAGTTGCCTCAAGAAGA+TGG + chr7_3:74228453-74228472 Msa1123340:intron 40.0%
GGTACCATTGTTTCACAACT+TGG + chr7_3:74229059-74229078 Msa1123340:intron 40.0%
TTCTTGACAACATCTGTGAC+AGG + chr7_3:74229091-74229110 Msa1123340:CDS 40.0%
TCTTGACAACATCTGTGACA+GGG + chr7_3:74229092-74229111 Msa1123340:CDS 40.0%
TCATCTCGAGAGAAGACTAA+AGG - chr7_3:74229123-74229142 None:intergenic 40.0%
AGTCTTCTCTCGAGATGAAA+AGG + chr7_3:74229125-74229144 Msa1123340:CDS 40.0%
GGACTTCAAAAATGTCCATC+AGG + chr7_3:74229211-74229230 Msa1123340:intron 40.0%
CGAAACCAAAGTCTAAGCAA+AGG + chr7_3:74229331-74229350 Msa1123340:CDS 40.0%
CAATGCCTTTGCTTAGACTT+TGG - chr7_3:74229339-74229358 None:intergenic 40.0%
TAGGCGATGAACTACTTTCT+TGG + chr7_3:74229392-74229411 Msa1123340:CDS 40.0%
TAAGACGTCCGTTTATTGAC+CGG + chr7_3:74229419-74229438 Msa1123340:CDS 40.0%
GTCTTGATGCTCAAAACTTG+AGG + chr7_3:74229494-74229513 Msa1123340:CDS 40.0%
GGTACATAACCGATCATTTC+CGG + chr7_3:74229515-74229534 Msa1123340:CDS 40.0%
GCAGAAATATATGGCTGATG+TGG - chr7_3:74229799-74229818 None:intergenic 40.0%
CACTTCTAGCCAGTTACTTG+TGG - chr7_3:74227733-74227752 None:intergenic 45.0%
AGCATATGCATTGTACTCGC+TGG + chr7_3:74227759-74227778 Msa1123340:five_prime_UTR 45.0%
CTTGATCCAACAATTGACGG+AGG + chr7_3:74227993-74228012 Msa1123340:intron 45.0%
ATCATCCCTCCGTCAATTGT+TGG - chr7_3:74228002-74228021 None:intergenic 45.0%
GGTATTCCTACATGCAGTCA+TGG + chr7_3:74228175-74228194 Msa1123340:intron 45.0%
TCTTTGCCATGACTGCATGT+AGG - chr7_3:74228184-74228203 None:intergenic 45.0%
TGAGATGTCGTGACATGGAA+TGG + chr7_3:74228219-74228238 Msa1123340:CDS 45.0%
! GGCATTTTGAACGTCAGAGA+TGG + chr7_3:74228288-74228307 Msa1123340:CDS 45.0%
! TTTTGAACGTCAGAGATGGG+CGG + chr7_3:74228292-74228311 Msa1123340:CDS 45.0%
AAGACTTACCTGAGGGTTTG+AGG + chr7_3:74228348-74228367 Msa1123340:CDS 45.0%
!! CCCAATTCCTCAAGTTTTGG+CGG - chr7_3:74228936-74228955 None:intergenic 45.0%
CCGCCAAAACTTGAGGAATT+GGG + chr7_3:74228933-74228952 Msa1123340:intron 45.0%
CGCCAAAACTTGAGGAATTG+GGG + chr7_3:74228934-74228953 Msa1123340:intron 45.0%
! CACCCCAATTCCTCAAGTTT+TGG - chr7_3:74228939-74228958 None:intergenic 45.0%
ATGAACACCATCCTTGGTAC+AGG - chr7_3:74229292-74229311 None:intergenic 45.0%
CGAACAATGAACACCATCCT+TGG - chr7_3:74229298-74229317 None:intergenic 45.0%
AGGATGGTGTTCATTGTTCG+CGG + chr7_3:74229298-74229317 Msa1123340:CDS 45.0%
GGTCAATAAACGGACGTCTT+AGG - chr7_3:74229420-74229439 None:intergenic 45.0%
AAGACAAACAAATGTGGCCG+AGG - chr7_3:74229455-74229474 None:intergenic 45.0%
CGAGATACTACTCGTCGAAT+TGG + chr7_3:74229572-74229591 Msa1123340:CDS 45.0%
ACTCGTCGAATTGGAGAACA+TGG + chr7_3:74229581-74229600 Msa1123340:CDS 45.0%
CTCGTCGAATTGGAGAACAT+GGG + chr7_3:74229582-74229601 Msa1123340:CDS 45.0%
CTTATAGACGTTACAGGCAG+AGG + chr7_3:74229626-74229645 Msa1123340:CDS 45.0%
TTATCCCTTACAGGAGTCAC+CGG - chr7_3:74229661-74229680 None:intergenic 45.0%
GTGACTCCTGTAAGGGATAA+TGG + chr7_3:74229661-74229680 Msa1123340:CDS 45.0%
! ACTCCTGTAAGGGATAATGG+AGG + chr7_3:74229664-74229683 Msa1123340:CDS 45.0%
!!! ATTTATTTGATTTTTTATTT+TGG + chr7_3:74229913-74229932 Msa1123340:three_prime_UTR 5.0%
!!! TTTATTTGATTTTTTATTTT+GGG + chr7_3:74229914-74229933 Msa1123340:three_prime_UTR 5.0%
GATGTCGTGACATGGAATGG+TGG + chr7_3:74228222-74228241 Msa1123340:CDS 50.0%
!! GTGACATGGAATGGTGGATG+AGG + chr7_3:74228228-74228247 Msa1123340:CDS 50.0%
!! ACATGGAATGGTGGATGAGG+AGG + chr7_3:74228231-74228250 Msa1123340:CDS 50.0%
ATGTCTCTCCTCAAACCCTC+AGG - chr7_3:74228359-74228378 None:intergenic 50.0%
TGATGAGGTCCAAGCAAAGG+TGG - chr7_3:74228388-74228407 None:intergenic 50.0%
!! CAAGTTTTGGCGGCTTCACA+AGG - chr7_3:74228926-74228945 None:intergenic 50.0%
TGTGAAGCCGCCAAAACTTG+AGG + chr7_3:74228926-74228945 Msa1123340:intron 50.0%
GCCGCCAAAACTTGAGGAAT+TGG + chr7_3:74228932-74228951 Msa1123340:intron 50.0%
GAGAAGGTGATCCTGTACCA+AGG + chr7_3:74229278-74229297 Msa1123340:CDS 50.0%
AGGTGATCCTGTACCAAGGA+TGG + chr7_3:74229282-74229301 Msa1123340:CDS 50.0%
! CTAAGAAACCTCCTGGTTCG+AGG - chr7_3:74229375-74229394 None:intergenic 50.0%
CTCGAACCAGGAGGTTTCTT+AGG + chr7_3:74229373-74229392 Msa1123340:CDS 50.0%
TCATCGCCTAAGAAACCTCC+TGG - chr7_3:74229382-74229401 None:intergenic 50.0%
GCTGGAAGCCGGTCAATAAA+CGG - chr7_3:74229430-74229449 None:intergenic 50.0%
GTGCCTCCATTATCCCTTAC+AGG - chr7_3:74229670-74229689 None:intergenic 50.0%
!! ATAATGGAGGCACTGAGCGT+AGG + chr7_3:74229677-74229696 Msa1123340:CDS 50.0%
! GGTGTGGGATTAGTGACGAC+AGG + chr7_3:74228035-74228054 Msa1123340:intron 55.0%
GCAGCTGAGATGTCGTGACA+TGG + chr7_3:74228214-74228233 Msa1123340:CDS 55.0%
!! TGGAATGGTGGATGAGGAGG+AGG + chr7_3:74228234-74228253 Msa1123340:CDS 55.0%
CATCTCATCCTCTCCTCCCA+TGG - chr7_3:74228318-74228337 None:intergenic 55.0%
CATGGGAGGAGAGGATGAGA+TGG + chr7_3:74228316-74228335 Msa1123340:CDS 55.0%
CATCAAGCGCCACCTTTGCT+TGG + chr7_3:74228376-74228395 Msa1123340:CDS 55.0%
GCAACTAGTGTCCTCGAACC+AGG + chr7_3:74229361-74229380 Msa1123340:CDS 55.0%
ACTAGTGTCCTCGAACCAGG+AGG + chr7_3:74229364-74229383 Msa1123340:CDS 55.0%
ACAAATGTGGCCGAGGAAGC+TGG - chr7_3:74229448-74229467 None:intergenic 55.0%
CGTTACAGGCAGAGGACTAG+AGG + chr7_3:74229634-74229653 Msa1123340:CDS 55.0%
AGGTCCGGTGACTCCTGTAA+GGG + chr7_3:74229654-74229673 Msa1123340:CDS 55.0%
! TGACCGGCTTCCAGCTTCCT+CGG + chr7_3:74229435-74229454 Msa1123340:CDS 60.0%
CAGGCAGAGGACTAGAGGTC+CGG + chr7_3:74229639-74229658 Msa1123340:CDS 60.0%
GAGGTCCGGTGACTCCTGTA+AGG + chr7_3:74229653-74229672 Msa1123340:CDS 60.0%
ACGTCAGAGATGGGCGGCCA+TGG + chr7_3:74228298-74228317 Msa1123340:CDS 65.0%
CGTCAGAGATGGGCGGCCAT+GGG + chr7_3:74228299-74228318 Msa1123340:CDS 65.0%
TGGCCGAGGAAGCTGGAAGC+CGG - chr7_3:74229441-74229460 None:intergenic 65.0%
CAGAGATGGGCGGCCATGGG+AGG + chr7_3:74228302-74228321 Msa1123340:CDS 70.0%
ATGGGCGGCCATGGGAGGAG+AGG + chr7_3:74228307-74228326 Msa1123340:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74227704 74230243 74227704 ID=Msa1123340;Name=Msa1123340
chr7_3 mRNA 74227704 74230243 74227704 ID=Msa1123340-mRNA-1;Parent=Msa1123340;Name=Msa1123340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=133|1|1|1|0.66|0.75|4|487|263
chr7_3 exon 74227704 74227818 74227704 ID=Msa1123340-mRNA-1:exon:19705;Parent=Msa1123340-mRNA-1
chr7_3 exon 74228176 74228412 74228176 ID=Msa1123340-mRNA-1:exon:19706;Parent=Msa1123340-mRNA-1
chr7_3 exon 74229060 74229146 74229060 ID=Msa1123340-mRNA-1:exon:19707;Parent=Msa1123340-mRNA-1
chr7_3 exon 74229271 74230243 74229271 ID=Msa1123340-mRNA-1:exon:19708;Parent=Msa1123340-mRNA-1
chr7_3 five_prime_UTR 74227704 74227818 74227704 ID=Msa1123340-mRNA-1:five_prime_utr;Parent=Msa1123340-mRNA-1
chr7_3 five_prime_UTR 74228176 74228193 74228176 ID=Msa1123340-mRNA-1:five_prime_utr;Parent=Msa1123340-mRNA-1
chr7_3 CDS 74228194 74228412 74228194 ID=Msa1123340-mRNA-1:cds;Parent=Msa1123340-mRNA-1
chr7_3 CDS 74229060 74229146 74229060 ID=Msa1123340-mRNA-1:cds;Parent=Msa1123340-mRNA-1
chr7_3 CDS 74229271 74229756 74229271 ID=Msa1123340-mRNA-1:cds;Parent=Msa1123340-mRNA-1
chr7_3 three_prime_UTR 74229757 74230243 74229757 ID=Msa1123340-mRNA-1:three_prime_utr;Parent=Msa1123340-mRNA-1
Gene Sequence

>Msa1123340

ATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCTTCCCGATTAAGACAAAGAGTTCGGCATTTTGAACGTCAGAGATGGGCGGCCATGGGAGGAGAGGATGAGATGGAACTGATCAAAGACTTACCTGAGGGTTTGAGGAGAGACATCAAGCGCCACCTTTGCTTGGACCTCATCAAAAAGGTACCATTGTTTCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCTTTAGTCTTCTCTCGAGATGAAAAGATAATTAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATTGTTCGCGGACGCATAAAGCGAAACCAAAGTCTAAGCAAAGGCATTGTAGCAACTAGTGTCCTCGAACCAGGAGGTTTCTTAGGCGATGAACTACTTTCTTGGTGCCTAAGACGTCCGTTTATTGACCGGCTTCCAGCTTCCTCGGCCACATTTGTTTGTCTTGAATCAACTGAAGCATTCGGTCTTGATGCTCAAAACTTGAGGTACATAACCGATCATTTCCGGTACAAATTTGCAAATGAGAGGCTAAAGAGAACGGCGAGATACTACTCGTCGAATTGGAGAACATGGGCTGCAGTTAACATTCAACTTGCTTATAGACGTTACAGGCAGAGGACTAGAGGTCCGGTGACTCCTGTAAGGGATAATGGAGGCACTGAGCGTAGGCTCATGCAGTACGCTGCAATGTTCATGTCAATTAGGCCACATGATCATCTTGAATGA

Protein sequence

>Msa1123340

MAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRHLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSRDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGIVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESTEAFGLDAQNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRQRTRGPVTPVRDNGGTERRLMQYAAMFMSIRPHDHLE*