AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1049440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1049440 MtrunA17_Chr7g0218341 99.535 215 1 0 1 215 1 215 5.40e-153 441
Msa1049440 MtrunA17_Chr6g0480851 41.905 105 60 1 109 213 184 287 4.02e-19 85.9
Msa1049440 MtrunA17_Chr1g0181121 40.777 103 59 1 109 211 44 144 3.10e-18 83.2
Msa1049440 MtrunA17_Chr6g0480671 37.736 106 65 1 108 213 192 296 6.34e-18 82.4
Msa1049440 MtrunA17_Chr6g0480781 31.056 161 92 3 71 213 113 272 8.62e-18 82.0
Msa1049440 MtrunA17_Chr4g0073941 40.566 106 62 1 108 213 98 202 1.47e-17 81.3
Msa1049440 MtrunA17_Chr3g0126541 38.679 106 64 1 108 213 80 184 3.60e-17 80.1
Msa1049440 MtrunA17_Chr7g0228181 38.095 105 63 1 108 212 43 145 1.22e-16 78.6
Msa1049440 MtrunA17_Chr2g0305771 40.741 108 61 1 108 212 42 149 1.72e-16 78.2
Msa1049440 MtrunA17_Chr8g0360821 42.056 107 58 3 110 215 63 166 2.14e-16 77.8
Msa1049440 MtrunA17_Chr6g0481021 37.143 105 65 1 109 213 123 226 5.64e-16 76.6
Msa1049440 MtrunA17_Chr1g0158861 35.000 120 76 2 94 213 69 186 7.47e-16 76.3
Msa1049440 MtrunA17_Chr2g0318551 44.828 87 46 2 106 191 59 144 7.53e-16 73.6
Msa1049440 MtrunA17_Chr3g0139071 40.741 108 61 1 108 212 72 179 4.56e-15 73.9
Msa1049440 MtrunA17_Chr7g0275581 31.159 138 88 3 80 212 50 185 6.33e-14 70.5
Msa1049440 MtrunA17_Chr6g0480751 29.412 119 83 1 94 212 83 200 1.46e-13 67.8
Msa1049440 MtrunA17_Chr4g0001481 33.333 120 71 2 102 213 86 204 2.15e-13 68.9
Msa1049440 MtrunA17_Chr3g0125651 37.190 121 71 2 91 211 21 136 4.08e-13 68.2
Msa1049440 MtrunA17_Chr6g0480741 29.245 106 74 1 108 213 114 218 8.39e-13 67.0
Msa1049440 MtrunA17_Chr4g0028861 32.039 103 68 1 108 210 123 223 8.64e-13 67.0
Msa1049440 MtrunA17_Chr6g0480681 30.476 105 71 1 109 213 115 217 2.16e-12 65.9
Msa1049440 MtrunA17_Chr2g0326871 38.235 102 61 2 109 210 77 176 5.48e-12 64.7
Msa1049440 MtrunA17_Chr8g0347121 31.148 122 81 2 91 212 44 162 1.20e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1049440 AT5G15410.1 65.258 213 66 5 9 215 10 220 4.21e-77 246
Msa1049440 AT5G15410.2 74.011 177 41 4 42 215 45 219 4.36e-77 246
Msa1049440 AT5G14870.1 43.810 105 57 1 108 212 39 141 7.07e-21 91.3
Msa1049440 AT2G24610.1 36.932 176 101 5 42 212 6 176 1.72e-19 87.0
Msa1049440 AT2G24610.2 38.462 156 89 4 59 212 41 191 2.19e-19 87.0
Msa1049440 AT3G17690.3 39.496 119 67 2 93 211 146 259 2.28e-18 83.6
Msa1049440 AT3G17690.2 39.496 119 67 2 93 211 146 259 2.66e-18 83.6
Msa1049440 AT1G01340.2 41.905 105 60 1 109 213 68 171 2.90e-18 83.6
Msa1049440 AT3G17700.2 36.134 119 71 2 93 211 180 293 3.10e-18 83.6
Msa1049440 AT1G01340.1 41.905 105 60 1 109 213 63 166 3.28e-18 83.6
Msa1049440 AT3G17690.1 39.496 119 67 2 93 211 146 259 3.31e-18 83.6
Msa1049440 AT3G17700.1 36.134 119 71 2 93 211 180 293 4.58e-18 83.2
Msa1049440 AT1G15990.1 38.679 106 65 0 108 213 89 194 1.09e-17 82.0
Msa1049440 AT2G23980.3 39.623 106 63 1 108 213 102 206 2.00e-17 81.3
Msa1049440 AT2G23980.2 39.623 106 63 1 108 213 102 206 2.00e-17 81.3
Msa1049440 AT2G23980.8 39.623 106 63 1 108 213 102 206 2.00e-17 81.3
Msa1049440 AT2G23980.7 39.623 106 63 1 108 213 102 206 2.00e-17 81.3
Msa1049440 AT2G23980.6 39.623 106 63 1 108 213 75 179 2.49e-17 80.9
Msa1049440 AT2G23980.9 39.623 106 63 1 108 213 102 206 2.52e-17 80.9
Msa1049440 AT2G23980.10 39.623 106 63 1 108 213 102 206 2.52e-17 80.9
Msa1049440 AT2G23980.1 39.623 106 63 1 108 213 102 206 2.52e-17 80.9
Msa1049440 AT2G23980.4 39.623 106 63 1 108 213 102 206 2.52e-17 80.9
Msa1049440 AT2G23980.5 39.623 106 63 1 108 213 102 206 2.52e-17 80.9
Msa1049440 AT4G30560.1 38.679 106 64 1 108 213 102 206 2.58e-17 80.9
Msa1049440 AT4G30560.4 38.679 106 64 1 108 213 102 206 2.58e-17 80.9
Msa1049440 AT4G30560.5 38.679 106 64 1 108 213 76 180 2.67e-17 80.9
Msa1049440 AT4G30560.2 38.679 106 64 1 108 213 76 180 2.67e-17 80.9
Msa1049440 AT4G30560.3 38.679 106 64 1 108 213 76 180 2.67e-17 80.9
Msa1049440 AT5G54250.2 44.578 83 45 1 102 184 72 153 2.74e-17 80.9
Msa1049440 AT5G54250.1 44.578 83 45 1 102 184 72 153 2.74e-17 80.9
Msa1049440 AT5G54250.4 44.578 83 45 1 102 184 72 153 2.74e-17 80.9
Msa1049440 AT5G54250.3 44.578 83 45 1 102 184 72 153 2.81e-17 80.9
Msa1049440 AT4G01010.1 40.952 105 61 1 109 213 68 171 6.62e-17 79.7
Msa1049440 AT4G01010.2 40.952 105 61 1 109 213 68 171 6.62e-17 79.7
Msa1049440 AT5G53130.1 32.143 168 110 3 47 212 21 186 8.30e-17 79.3
Msa1049440 AT1G19780.1 38.679 106 64 1 108 213 96 200 2.36e-16 78.2
Msa1049440 AT3G48010.1 39.048 105 63 1 108 212 43 146 1.00e-14 73.2
Msa1049440 AT2G28260.2 35.200 125 73 2 92 210 5 127 2.25e-14 72.0
Msa1049440 AT2G28260.1 35.659 129 74 3 92 213 45 171 2.36e-14 72.0
Msa1049440 AT4G30360.1 38.318 107 63 2 109 212 71 177 3.47e-14 71.6
Msa1049440 AT5G57940.1 36.538 104 65 1 108 211 87 189 3.59e-13 68.6
Msa1049440 AT5G57940.2 36.538 104 65 1 108 211 87 189 3.59e-13 68.6
Msa1049440 AT5G57940.3 36.538 104 65 1 108 211 80 182 3.68e-13 68.6
Msa1049440 AT2G46430.1 34.906 106 68 1 108 213 71 175 1.05e-11 64.3
Msa1049440 AT2G46430.2 34.906 106 68 1 108 213 71 175 1.05e-11 64.3

Find 211 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTCTCTTATCAATTT+TGG 0.079415 7_2:+12757858 None:intergenic
ACTAATTCTTGCAGCACTTT+TGG 0.238112 7_2:-12756657 Msa1049440:intron
TATTGGATGCAATCTTTCTT+TGG 0.239216 7_2:-12757275 Msa1049440:three_prime_UTR
GCCGAACTCTTTGTCTTAAT+CGG 0.243695 7_2:+12756082 None:intergenic
GGCACCATTTGGTGGGGATT+TGG 0.246313 7_2:-12757720 Msa1049440:three_prime_UTR
AAAGAGAGAAATAGTGATTC+AGG 0.258928 7_2:-12754310 Msa1049440:three_prime_UTR
TTGCCTAAAACTCCCCAATT+TGG 0.262276 7_2:+12760771 None:intergenic
GGTAAACCTTAGGGAGAAAT+TGG 0.263094 7_2:+12757793 None:intergenic
CACTCCACCATGCTGATTAC+TGG 0.271370 7_2:+12760942 None:intergenic
GTTGACGGACCGTACAAATA+TGG 0.279588 7_2:-12757148 Msa1049440:three_prime_UTR
AATTGCACGCGCTTGCTTCT+TGG 0.279881 7_2:+12760738 None:intergenic
AAGTACAAGGCAGCCTTAAA+AGG 0.285103 7_2:+12754233 None:intergenic
GTGCCTCCATTATCCCTTAC+AGG 0.286550 7_2:+12754683 None:intergenic
GGTACATAACCGATCATTTC+CGG 0.286930 7_2:-12754835 Msa1049440:three_prime_UTR
TAGAGTGGATGGTAGTGTTT+TGG 0.292648 7_2:+12761907 None:intergenic
GAGCAGTATCAAAGCCAAAT+TGG 0.306208 7_2:-12760785 Msa1049440:CDS
GGTCAATAAACGGACGTCTT+AGG 0.308093 7_2:+12754933 None:intergenic
GTGGATTGGTGGAAAATTCT+TGG 0.308729 7_2:-12761045 Msa1049440:CDS
TGCTATAATTTATAGGTTGC+TGG 0.318815 7_2:-12757364 Msa1049440:intron
TTGCTTGGACCTCATCAAAA+AGG 0.331377 7_2:-12755959 Msa1049440:intron
CCGCAAAATGCAGAAATATA+TGG 0.344454 7_2:+12754545 None:intergenic
CCGGCGGACGCTTCCCATTC+GGG 0.347149 7_2:+12760852 None:intergenic
CTGCAATGTTCATGTCAATT+AGG 0.348025 7_2:-12754637 Msa1049440:three_prime_UTR
CAATGCCTTTGCTTAGACTT+TGG 0.354479 7_2:+12755014 None:intergenic
TAGGCGATGAACTACTTTCT+TGG 0.358512 7_2:-12754958 Msa1049440:three_prime_UTR
CAGCAGTGTGAAAGAACTAT+TGG 0.359069 7_2:-12757292 Msa1049440:three_prime_UTR
CGGTGCATTTGTTTCATGTT+TGG 0.361294 7_2:-12760560 Msa1049440:CDS
GGATTTCCAATCGTTCCTTC+TGG 0.367798 7_2:+12757217 None:intergenic
GTGACTCCTGTAAGGGATAA+TGG 0.371039 7_2:-12754689 Msa1049440:three_prime_UTR
AAAGTCACAGGCTACATCTT+TGG 0.371386 7_2:-12757741 Msa1049440:three_prime_UTR
ATCCAACCGCGCGTTGTTGT+TGG 0.373879 7_2:-12760715 Msa1049440:CDS
AGCAGTATCAAAGCCAAATT+GGG 0.374364 7_2:-12760784 Msa1049440:CDS
AAAGAGAGAGTGAGAGGGTA+GGG 0.376961 7_2:+12761728 None:intergenic
CTTGACAGCCAAGGAATTGC+TGG 0.385081 7_2:+12757096 None:intergenic
AACTTGCTTATAGACGTTAC+AGG 0.387453 7_2:-12754730 Msa1049440:three_prime_UTR
GATATGCTATGGTAAACCTT+AGG 0.389660 7_2:+12757783 None:intergenic
TTCTTTCACACTGCTGTTGA+AGG 0.390085 7_2:+12757299 None:intergenic
ATCTTGAACCCACAAGTAAC+TGG 0.395487 7_2:-12756629 Msa1049440:three_prime_UTR
CGAGATACTACTCGTCGAAT+TGG 0.400059 7_2:-12754778 Msa1049440:three_prime_UTR
GCTACATCTTTGGCACCATT+TGG 0.400815 7_2:-12757731 Msa1049440:three_prime_UTR
TTGGTGAAGTGAATTGAAAC+TGG 0.402357 7_2:+12761874 None:intergenic
GGTACCATTGTTTCACAACT+TGG 0.414666 7_2:-12755291 Msa1049440:three_prime_UTR
CATCAAGCGCCACCTTTGCT+TGG 0.417719 7_2:-12755974 Msa1049440:three_prime_UTR
AGGGTCGCCGTGTTTGTATA+TGG 0.421162 7_2:-12760631 Msa1049440:CDS
TTTGTTTGCAGGTTGTGTTT+TGG 0.426454 7_2:-12757890 Msa1049440:intron
AAGACTTACCTGAGGGTTTG+AGG 0.427919 7_2:-12756002 Msa1049440:three_prime_UTR
TGGTTTAGCGGCGGTTGTTA+CGG 0.428496 7_2:-12760604 Msa1049440:CDS
TGTCATATCCAGCAATTCCT+TGG 0.429530 7_2:-12757104 Msa1049440:three_prime_UTR
GTGACAACTGTCTGCACAGC+TGG 0.429618 7_2:+12760878 None:intergenic
ACAAATGTGGCCGAGGAAGC+TGG 0.430790 7_2:+12754905 None:intergenic
CTCGAACCAGGAGGTTTCTT+AGG 0.431143 7_2:-12754977 Msa1049440:three_prime_UTR
TTTGTTCCAATTTCTCCCTA+AGG 0.438542 7_2:-12757799 Msa1049440:three_prime_UTR
AGCACATGGTTTGTAAGTGT+TGG 0.439366 7_2:+12761770 None:intergenic
CCGAACTCTTTGTCTTAATC+GGG 0.442264 7_2:+12756083 None:intergenic
CATCTTTGGCACCATTTGGT+GGG 0.442499 7_2:-12757727 Msa1049440:three_prime_UTR
GTTGGCGCGTGGTGTTGCTC+TGG 0.445127 7_2:-12760697 Msa1049440:CDS
AAAATAAATAAAACCAATCA+TGG 0.445625 7_2:+12754455 None:intergenic
ATGATCATCTTGAATGATGA+AGG 0.447805 7_2:-12754610 Msa1049440:three_prime_UTR
ACATCTTTGGCACCATTTGG+TGG 0.449923 7_2:-12757728 Msa1049440:three_prime_UTR
GATAAACTTGTGTCCATGAT+TGG 0.450306 7_2:-12754468 Msa1049440:three_prime_UTR
CCCGATTAAGACAAAGAGTT+CGG 0.451229 7_2:-12756083 Msa1049440:three_prime_UTR
ACTTATTGAATAAATAATGA+AGG 0.451409 7_2:-12754214 Msa1049440:three_prime_UTR
TTTGATTCATCACTCTCTCA+TGG 0.451748 7_2:-12761685 Msa1049440:five_prime_UTR
GAATCGCTTGTTGTTGGATG+TGG 0.452041 7_2:-12760507 Msa1049440:CDS
GAGGTCCGGTGACTCCTGTA+AGG 0.454750 7_2:-12754697 Msa1049440:three_prime_UTR
TGGATTGGTGGAAAATTCTT+GGG 0.458229 7_2:-12761044 Msa1049440:CDS
TTCTTGACAACATCTGTGAC+AGG 0.460022 7_2:-12755259 Msa1049440:three_prime_UTR
TTGACGGACCGTACAAATAT+GGG 0.461139 7_2:-12757147 Msa1049440:three_prime_UTR
CACTTCTAGCCAGTTACTTG+TGG 0.461652 7_2:+12756620 None:intergenic
CTTGAATCAACTGAAGCATT+CGG 0.467071 7_2:-12754878 Msa1049440:three_prime_UTR
GAGAGAGGAGAAGGTGGGCA+TGG 0.467830 7_2:+12761642 None:intergenic
CAAATATGGGATTTACCAAT+GGG 0.468155 7_2:-12757134 Msa1049440:three_prime_UTR
TCATCTCGAGAGAAGACTAA+AGG 0.472290 7_2:+12755230 None:intergenic
GATTGGAACTAGATAGGAAC+CGG 0.475356 7_2:+12760833 None:intergenic
ATCTTTGGCACCATTTGGTG+GGG 0.476964 7_2:-12757726 Msa1049440:three_prime_UTR
AGTCTTCTCTCGAGATGAAA+AGG 0.477345 7_2:-12755225 Msa1049440:intron
TAACAATTTCAAAGGTCTGA+AGG 0.477905 7_2:+12754370 None:intergenic
ACTTCTAGCCAGTTACTTGT+GGG 0.480880 7_2:+12756621 None:intergenic
CTTATAGACGTTACAGGCAG+AGG 0.484790 7_2:-12754724 Msa1049440:three_prime_UTR
ACGTCAGAGATGGGCGGCCA+TGG 0.485284 7_2:-12756052 Msa1049440:three_prime_UTR
TTTGGGGTTTGATGACCCTC+AGG 0.486459 7_2:-12757057 Msa1049440:intron
ATATGCTATGGTAAACCTTA+GGG 0.486563 7_2:+12757784 None:intergenic
AGCATATGCATTGTACTCGC+TGG 0.487171 7_2:-12756591 Msa1049440:three_prime_UTR
CGAACAATGAACACCATCCT+TGG 0.487181 7_2:+12755055 None:intergenic
GAAAGAGAGAGTGAGAGGGT+AGG 0.487779 7_2:+12761727 None:intergenic
TATAAATGTGTATAAGATGA+TGG 0.489052 7_2:+12761814 None:intergenic
ATGGGCGGCCATGGGAGGAG+AGG 0.495829 7_2:-12756043 Msa1049440:three_prime_UTR
GGTTGTTACGGTGGCGCGTA+CGG 0.497452 7_2:-12760592 Msa1049440:CDS
AACAATTTCAAAGGTCTGAA+GGG 0.501465 7_2:+12754371 None:intergenic
CGCCAACAACAACGCGCGGT+TGG 0.503704 7_2:+12760713 None:intergenic
CATCTCATCCTCTCCTCCCA+TGG 0.505028 7_2:+12756035 None:intergenic
TCGAGAGAATCGCTTGTTGT+TGG 0.506065 7_2:-12760513 Msa1049440:CDS
GCTGGAAGCCGGTCAATAAA+CGG 0.507628 7_2:+12754923 None:intergenic
ATCGTTGAGTTTCCACCACA+TGG 0.509992 7_2:+12757196 None:intergenic
GTACCTAGGGAGAGAGGAGA+AGG 0.515734 7_2:+12761633 None:intergenic
CAGTTGTCACCAACCCGAAT+GGG 0.516483 7_2:-12760865 Msa1049440:CDS
TGACCGGCTTCCAGCTTCCT+CGG 0.516912 7_2:-12754915 Msa1049440:three_prime_UTR
ACTCCACCATGCTGATTACT+GGG 0.517503 7_2:+12760943 None:intergenic
GTATATGGATGGTGGTTTAG+CGG 0.518430 7_2:-12760616 Msa1049440:CDS
CCACCTTCTCCTCTCTCCCT+AGG 0.520444 7_2:-12761636 Msa1049440:intron
CGTCAGAGATGGGCGGCCAT+GGG 0.522711 7_2:-12756051 Msa1049440:three_prime_UTR
TGGAATGGTGGATGAGGAGG+AGG 0.523089 7_2:-12756116 Msa1049440:three_prime_UTR
TCTCATTTGCAAATTTGTAC+CGG 0.523525 7_2:+12754816 None:intergenic
TAAGACGTCCGTTTATTGAC+CGG 0.524457 7_2:-12754931 Msa1049440:three_prime_UTR
ACAAATATGGGATTTACCAA+TGG 0.526887 7_2:-12757135 Msa1049440:three_prime_UTR
TTTGTTGATCGGAAACATCC+AGG 0.527636 7_2:-12756553 Msa1049440:intron
CCTATGTGTTTAGATGTTGA+CGG 0.528827 7_2:-12757163 Msa1049440:three_prime_UTR
CCTAGGGAGAGAGGAGAAGG+TGG 0.528999 7_2:+12761636 None:intergenic
CTAAGAAACCTCCTGGTTCG+AGG 0.530685 7_2:+12754978 None:intergenic
TTCTCATCATAGATATGCTA+TGG 0.530876 7_2:+12757772 None:intergenic
TGGCCGAGGAAGCTGGAAGC+CGG 0.532343 7_2:+12754912 None:intergenic
TACATGAAAGAGAGAGTGAG+AGG 0.533347 7_2:+12761722 None:intergenic
GAGTCCAAATCCCCACCAAA+TGG 0.533365 7_2:+12757716 None:intergenic
TATAGGTTGCTGGAGGGTGT+TGG 0.535254 7_2:-12757354 Msa1049440:intron
TTGTTACCAGAAGGAACGAT+TGG 0.535755 7_2:-12757223 Msa1049440:three_prime_UTR
ACATGAAAGAGAGAGTGAGA+GGG 0.537747 7_2:+12761723 None:intergenic
TTAAATTGCAATTGTGGTCG+CGG 0.538224 7_2:+12754499 None:intergenic
TGGTAAATCCCATATTTGTA+CGG 0.545024 7_2:+12757139 None:intergenic
TCATCGCCTAAGAAACCTCC+TGG 0.546060 7_2:+12754971 None:intergenic
GCAACTAGTGTCCTCGAACC+AGG 0.546742 7_2:-12754989 Msa1049440:three_prime_UTR
ATGTCTCTCCTCAAACCCTC+AGG 0.547362 7_2:+12755994 None:intergenic
ATGAGAGAGTGATGAATCAA+AGG 0.547934 7_2:+12761687 None:intergenic
TTCTTTGGCATGTTCAGAGG+AGG 0.550810 7_2:-12757260 Msa1049440:three_prime_UTR
CGCGCGTTGTTGTTGGCGCG+TGG 0.551108 7_2:-12760708 Msa1049440:CDS
CGCTGTCTATAGGGAGAGAA+GGG 0.551121 7_2:-12760650 Msa1049440:CDS
AGGATGGTGTTCATTGTTCG+CGG 0.551595 7_2:-12755052 Msa1049440:three_prime_UTR
ATGAACACCATCCTTGGTAC+AGG 0.552013 7_2:+12755061 None:intergenic
TCTTTCTTTGGCATGTTCAG+AGG 0.552414 7_2:-12757263 Msa1049440:three_prime_UTR
ACTCGTCGAATTGGAGAACA+TGG 0.552999 7_2:-12754769 Msa1049440:three_prime_UTR
CGGACGCTTCCCATTCGGGT+TGG 0.553468 7_2:+12760856 None:intergenic
CAGCTGGTGGAGTGGAACAC+TGG 0.556792 7_2:+12760894 None:intergenic
TCTTTGCCATGACTGCATGT+AGG 0.558556 7_2:+12756169 None:intergenic
CAGGCAGAGGACTAGAGGTC+CGG 0.559424 7_2:-12754711 Msa1049440:three_prime_UTR
CTGCTGAGACGGCAACTCCA+GGG 0.563137 7_2:+12760973 None:intergenic
TGGGTTGTCGTCTGCTGAGA+CGG 0.563719 7_2:+12760962 None:intergenic
TTATTTATTCAATAAGTACA+AGG 0.565084 7_2:+12754220 None:intergenic
GTTCCAATCCAAAACCGTCC+CGG 0.565425 7_2:-12760819 Msa1049440:CDS
ACTGGTTACGCAACGTAGAG+TGG 0.568861 7_2:+12761892 None:intergenic
AAGGAATTGCTGGATATGAC+AGG 0.571022 7_2:+12757106 None:intergenic
CAGAGATGGGCGGCCATGGG+AGG 0.571124 7_2:-12756048 Msa1049440:three_prime_UTR
GCGCTGTCTATAGGGAGAGA+AGG 0.576916 7_2:-12760651 Msa1049440:CDS
AAGACAAACAAATGTGGCCG+AGG 0.578636 7_2:+12754898 None:intergenic
ACAGTTGTCACCAACCCGAA+TGG 0.580011 7_2:-12760866 Msa1049440:CDS
TATAAGTCTTTGTTACCAGA+AGG 0.580998 7_2:-12757232 Msa1049440:three_prime_UTR
GGTATTCCTACATGCAGTCA+TGG 0.581719 7_2:-12756175 Msa1049440:three_prime_UTR
ACGTTGTTGATTGTGTTGCT+AGG 0.583661 7_2:+12761014 None:intergenic
GTCTTGATGCTCAAAACTTG+AGG 0.585851 7_2:-12754856 Msa1049440:three_prime_UTR
CATTATATGAGATCTTTCAA+AGG 0.586227 7_2:-12760450 Msa1049440:intron
CGTTACAGGCAGAGGACTAG+AGG 0.586315 7_2:-12754716 Msa1049440:three_prime_UTR
AGGTGATCCTGTACCAAGGA+TGG 0.586464 7_2:-12755068 Msa1049440:three_prime_UTR
TTGGTGGAAAATTCTTGGGA+AGG 0.587898 7_2:-12761040 Msa1049440:CDS
TCTCATATAATGAGAAGCAA+TGG 0.588285 7_2:+12760461 None:intergenic
ACAACTGTCTGCACAGCTGG+TGG 0.588412 7_2:+12760881 None:intergenic
CCGTGTTTGTATATGGATGG+TGG 0.588479 7_2:-12760624 Msa1049440:CDS
GGTACAAATTTGCAAATGAG+AGG 0.592078 7_2:-12754814 Msa1049440:three_prime_UTR
CTTATTGAATAAATAATGAA+GGG 0.592287 7_2:-12754213 Msa1049440:three_prime_UTR
TGTTACGGTGGCGCGTACGG+TGG 0.595042 7_2:-12760589 Msa1049440:CDS
AAATTTGTACCGGAAATGAT+CGG 0.599973 7_2:+12754826 None:intergenic
TATAATTTATAGGTTGCTGG+AGG 0.602212 7_2:-12757361 Msa1049440:intron
TGATGAGGTCCAAGCAAAGG+TGG 0.605075 7_2:+12755965 None:intergenic
CATGGGAGGAGAGGATGAGA+TGG 0.605094 7_2:-12756034 Msa1049440:three_prime_UTR
TCATCCAAGTTGTGAAACAA+TGG 0.606915 7_2:+12755287 None:intergenic
ACTCTTTGTCTTAATCGGGA+AGG 0.608162 7_2:+12756087 None:intergenic
ATAAAGAATCTTGACAGCCA+AGG 0.609534 7_2:+12757087 None:intergenic
ACGATTGGAAATCCATGTGG+TGG 0.610145 7_2:-12757208 Msa1049440:three_prime_UTR
TCGCCGTGTTTGTATATGGA+TGG 0.612064 7_2:-12760627 Msa1049440:CDS
ACATGGAATGGTGGATGAGG+AGG 0.614255 7_2:-12756119 Msa1049440:three_prime_UTR
TTATCCCTTACAGGAGTCAC+CGG 0.615827 7_2:+12754692 None:intergenic
TGTCTGCACAGCTGGTGGAG+TGG 0.617877 7_2:+12760886 None:intergenic
TTGGATGTGGGAAACTCGTG+TGG 0.619126 7_2:-12760494 Msa1049440:CDS
TTTAGCGGCGGTTGTTACGG+TGG 0.620430 7_2:-12760601 Msa1049440:CDS
TGAGATGTCGTGACATGGAA+TGG 0.621051 7_2:-12756131 Msa1049440:three_prime_UTR
GGCGCGTACGGTGGTTGATG+CGG 0.621889 7_2:-12760580 Msa1049440:CDS
CGAAACCAAAGTCTAAGCAA+AGG 0.623581 7_2:-12755019 Msa1049440:three_prime_UTR
AAATGAGAGGCTAAAGAGAA+CGG 0.624073 7_2:-12754801 Msa1049440:three_prime_UTR
GTGAAACAGATAATTAGAGA+AGG 0.624615 7_2:-12755088 Msa1049440:intron
ATATGACAGGAAGTGCCCAT+TGG 0.625889 7_2:+12757119 None:intergenic
ATAATGGAGGCACTGAGCGT+AGG 0.626496 7_2:-12754673 Msa1049440:three_prime_UTR
ATAATTTATAGGTTGCTGGA+GGG 0.628248 7_2:-12757360 Msa1049440:intron
ATGTGACAGTGAAGAGCACA+TGG 0.629213 7_2:+12761756 None:intergenic
AATCGCTTGTTGTTGGATGT+GGG 0.629974 7_2:-12760506 Msa1049440:CDS
TGGATGGTACCTAGGGAGAG+AGG 0.630893 7_2:+12761627 None:intergenic
AGGTCCGGTGACTCCTGTAA+GGG 0.632405 7_2:-12754696 Msa1049440:three_prime_UTR
CCGTCAACATCTAAACACAT+AGG 0.632629 7_2:+12757163 None:intergenic
CCACCATCCATATACAAACA+CGG 0.632835 7_2:+12760624 None:intergenic
GTGACATGGAATGGTGGATG+AGG 0.635573 7_2:-12756122 Msa1049440:three_prime_UTR
GCAGAAATATATGGCTGATG+TGG 0.636559 7_2:+12754554 None:intergenic
GCAGCTGAGATGTCGTGACA+TGG 0.637860 7_2:-12756136 Msa1049440:three_prime_UTR
CTGATCAAAGACTTACCTGA+GGG 0.638121 7_2:-12756009 Msa1049440:three_prime_UTR
GTTACGCAACGTAGAGTGGA+TGG 0.639936 7_2:+12761896 None:intergenic
CATCATTCAAGATGATCATG+TGG 0.648975 7_2:+12754614 None:intergenic
CTAGGGAGAGAGGAGAAGGT+GGG 0.651532 7_2:+12761637 None:intergenic
ATGGACACAAGTTTATCACA+TGG 0.655848 7_2:+12754474 None:intergenic
TGTTACGCATGCACACAAGT+TGG 0.659954 7_2:-12760921 Msa1049440:CDS
AGCAACACAATCAACAACGT+TGG 0.660753 7_2:-12761011 Msa1049440:CDS
TCTTGACAACATCTGTGACA+GGG 0.672297 7_2:-12755258 Msa1049440:three_prime_UTR
TGATTCAAGACAAACAAATG+TGG 0.676291 7_2:+12754892 None:intergenic
TATGGATGGTGGTTTAGCGG+CGG 0.688411 7_2:-12760613 Msa1049440:CDS
CGACAACCCAGTAATCAGCA+TGG 0.695371 7_2:-12760949 Msa1049440:CDS
GAGAAGGTGATCCTGTACCA+AGG 0.698618 7_2:-12755072 Msa1049440:three_prime_UTR
GCAGTATCAAAGCCAAATTG+GGG 0.708168 7_2:-12760783 Msa1049440:CDS
ACTGATCAAAGACTTACCTG+AGG 0.709178 7_2:-12756010 Msa1049440:three_prime_UTR
CTCGTCGAATTGGAGAACAT+GGG 0.715220 7_2:-12754768 Msa1049440:three_prime_UTR
GGTGACAGCAGTGATGACCC+TGG 0.715870 7_2:-12760990 Msa1049440:CDS
CAACCCAGTAATCAGCATGG+TGG 0.718534 7_2:-12760946 Msa1049440:CDS
GATGTCGTGACATGGAATGG+TGG 0.720965 7_2:-12756128 Msa1049440:three_prime_UTR
TGGATGTGGGAAACTCGTGT+GGG 0.728221 7_2:-12760493 Msa1049440:CDS
TGGAACTAGATAGGAACCGG+CGG 0.730012 7_2:+12760836 None:intergenic
ACTCCTGTAAGGGATAATGG+AGG 0.737690 7_2:-12754686 Msa1049440:three_prime_UTR
GGAACGATTGGAAATCCATG+TGG 0.744870 7_2:-12757211 Msa1049440:three_prime_UTR
ACTAGTGTCCTCGAACCAGG+AGG 0.746623 7_2:-12754986 Msa1049440:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATAATTTTTTTT+TGG - chr7_2:12756379-12756398 Msa1049440:intron 0.0%
!! TATTTAATCTAAATTTAGAT+TGG - chr7_2:12754546-12754565 Msa1049440:three_prime_UTR 10.0%
!!! ATAAACTTTATAGTTTTTTT+TGG + chr7_2:12758003-12758022 None:intergenic 10.0%
!! AAAAAACTATAAAGTTTATT+TGG - chr7_2:12758004-12758023 Msa1049440:intron 10.0%
!! TATTTGTAATAATAATGTAT+TGG + chr7_2:12759757-12759776 None:intergenic 10.0%
!!! TTATTTGATTTTTTATTTTG+GGG - chr7_2:12761613-12761632 Msa1049440:intron 10.0%
!!! TATTTTTGTTTTTAATAGAA+AGG + chr7_2:12761896-12761915 None:intergenic 10.0%
!! TTTCTATTAAAAACAAAAAT+AGG - chr7_2:12761895-12761914 Msa1049440:five_prime_UTR 10.0%
!! TTCTATTAAAAACAAAAATA+GGG - chr7_2:12761896-12761915 Msa1049440:five_prime_UTR 10.0%
!!! AAAATTCCATTATTCTATTT+TGG - chr7_2:12755661-12755680 Msa1049440:intron 15.0%
!!! AAATTCCATTATTCTATTTT+GGG - chr7_2:12755662-12755681 Msa1049440:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr7_2:12756149-12756168 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr7_2:12755928-12755947 None:intergenic 15.0%
!! TTCAAAAATTTAAGTGTTTA+AGG - chr7_2:12756059-12756078 Msa1049440:three_prime_UTR 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr7_2:12756149-12756168 Msa1049440:three_prime_UTR 15.0%
!! AATTGAGTAAAAAAATAGAA+GGG + chr7_2:12756223-12756242 None:intergenic 15.0%
!! TAATTGAGTAAAAAAATAGA+AGG + chr7_2:12756224-12756243 None:intergenic 15.0%
!! TCAATTATTACAATATATTG+TGG - chr7_2:12756237-12756256 Msa1049440:intron 15.0%
!! CAATTATTACAATATATTGT+GGG - chr7_2:12756238-12756257 Msa1049440:intron 15.0%
!! ATGATTTGATTAAATGTTTA+AGG + chr7_2:12756356-12756375 None:intergenic 15.0%
!!! ATGAGTAAAAAAGTTTTATA+CGG - chr7_2:12756465-12756484 Msa1049440:intron 15.0%
!!! ATCTTTAAAAATTTTAAACG+TGG - chr7_2:12757146-12757165 Msa1049440:three_prime_UTR 15.0%
!!! TCTTTAAAAATTTTAAACGT+GGG - chr7_2:12757147-12757166 Msa1049440:three_prime_UTR 15.0%
!!! TTTAATCTTTTGTTCTTTTA+AGG - chr7_2:12757170-12757189 Msa1049440:three_prime_UTR 15.0%
!!! ATAAATAAACAGTTTTTTCT+TGG + chr7_2:12757352-12757371 None:intergenic 15.0%
!! AAAAACTGTTTATTTATTGT+TGG - chr7_2:12757355-12757374 Msa1049440:intron 15.0%
!!! TAAATAGTATGCATATTTTT+TGG - chr7_2:12757634-12757653 Msa1049440:intron 15.0%
!! ATGTGAAATAGAATATTATT+TGG + chr7_2:12759320-12759339 None:intergenic 15.0%
!! AAAATAAATAAAACCAATCA+TGG + chr7_2:12761590-12761609 None:intergenic 15.0%
!!! TTTTCACATAAAATTTATTG+AGG + chr7_2:12761647-12761666 None:intergenic 15.0%
!!! TTTTCAAATAACAATTTCAA+AGG + chr7_2:12761683-12761702 None:intergenic 15.0%
!! TTATTTATTCAATAAGTACA+AGG + chr7_2:12761825-12761844 None:intergenic 15.0%
!! ACTTATTGAATAAATAATGA+AGG - chr7_2:12761828-12761847 Msa1049440:five_prime_UTR 15.0%
!! CTTATTGAATAAATAATGAA+GGG - chr7_2:12761829-12761848 Msa1049440:five_prime_UTR 15.0%
!! TATAAATGTGTATAAGATGA+TGG + chr7_2:12754231-12754250 None:intergenic 20.0%
!! ACTAAATATGTTAATTAACG+AGG - chr7_2:12754650-12754669 Msa1049440:three_prime_UTR 20.0%
!! CTAAATATGTTAATTAACGA+GGG - chr7_2:12754651-12754670 Msa1049440:three_prime_UTR 20.0%
!! ATTAACCCAAAATAGAATAA+TGG + chr7_2:12755670-12755689 None:intergenic 20.0%
!! AGGACAAAAAAACAAAATTA+GGG + chr7_2:12755765-12755784 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr7_2:12755798-12755817 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr7_2:12755799-12755818 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr7_2:12755893-12755912 None:intergenic 20.0%
!! ATACATAAAGATTCATTTCT+AGG - chr7_2:12756491-12756510 Msa1049440:intron 20.0%
!!! GATATAAACATATTTTACGT+TGG - chr7_2:12756544-12756563 Msa1049440:intron 20.0%
!! GTAAAATATCTTTACATTGT+CGG + chr7_2:12756595-12756614 None:intergenic 20.0%
!!! ATGTTTTTGTTTTTACTACT+TGG - chr7_2:12756897-12756916 Msa1049440:intron 20.0%
!! ATTATTAAACCAATCAAAAG+TGG + chr7_2:12757019-12757038 None:intergenic 20.0%
!! GAATGAGTAAATATTCAAAT+TGG - chr7_2:12757080-12757099 Msa1049440:three_prime_UTR 20.0%
!!! TGTTCTTTTAAGGATAATTA+TGG - chr7_2:12757180-12757199 Msa1049440:three_prime_UTR 20.0%
!! GTTACAATATATAATCAAGT+TGG + chr7_2:12757330-12757349 None:intergenic 20.0%
!! TTATTTATTGTTGGATAAAG+AGG - chr7_2:12757364-12757383 Msa1049440:intron 20.0%
!! TAACAAGAACAAACATATAA+AGG + chr7_2:12758096-12758115 None:intergenic 20.0%
!! AATCTCTTGTGTAAAAAATA+GGG - chr7_2:12758496-12758515 Msa1049440:intron 20.0%
!!! ATAAACACTTCTAAGATAAA+AGG - chr7_2:12758652-12758671 Msa1049440:intron 20.0%
!! AAGGTTATGCTATAATTTAT+AGG - chr7_2:12758671-12758690 Msa1049440:intron 20.0%
!! TTAATTATATCTTGAACTGT+TGG - chr7_2:12759192-12759211 Msa1049440:intron 20.0%
!! TAATTATATCTTGAACTGTT+GGG - chr7_2:12759193-12759212 Msa1049440:intron 20.0%
!!! TTAAACTTCAGAAAGATTTT+AGG + chr7_2:12759253-12759272 None:intergenic 20.0%
!! ATAGATGTTAACTAAATCAA+GGG + chr7_2:12759349-12759368 None:intergenic 20.0%
!! AATCCAATAATAATCTACTT+CGG + chr7_2:12759518-12759537 None:intergenic 20.0%
!! AAGTAGATTATTATTGGATT+TGG - chr7_2:12759518-12759537 Msa1049440:intron 20.0%
!! AAAATACTAAACTTGAAAAC+TGG + chr7_2:12759616-12759635 None:intergenic 20.0%
!! TGTTAGATTAAGAAAGATAA+AGG - chr7_2:12760183-12760202 Msa1049440:intron 20.0%
!! TTATGAAATGATATAATAGC+AGG - chr7_2:12760214-12760233 Msa1049440:intron 20.0%
!!! ATATAGCTTGAATTATTTTG+AGG + chr7_2:12760331-12760350 None:intergenic 20.0%
!! TAGAATTCATCATGATTAAA+TGG - chr7_2:12760464-12760483 Msa1049440:CDS 20.0%
!! TGATTAAATGGAATTCAATA+TGG - chr7_2:12760476-12760495 Msa1049440:CDS 20.0%
!! GATTAAATGGAATTCAATAT+GGG - chr7_2:12760477-12760496 Msa1049440:CDS 20.0%
!! GATACTAAATTAAACTCAAA+TGG + chr7_2:12760539-12760558 None:intergenic 20.0%
!!! ATTTGAACAATTTCCTTTTA+AGG - chr7_2:12761796-12761815 Msa1049440:five_prime_UTR 20.0%
!!! TTTGATTTTGCATGTGAATT+TGG + chr7_2:12754190-12754209 None:intergenic 25.0%
! ATGATATTGAAGGATGAAAT+TGG + chr7_2:12754449-12754468 None:intergenic 25.0%
! CAATTGAAAGATGATATTGA+AGG + chr7_2:12754459-12754478 None:intergenic 25.0%
!! TACTTGTATTTAAGATCAGA+TGG - chr7_2:12754584-12754603 Msa1049440:three_prime_UTR 25.0%
!! TTGGTGGATAAATAACTTAA+GGG + chr7_2:12754785-12754804 None:intergenic 25.0%
!! ATTGGTGGATAAATAACTTA+AGG + chr7_2:12754786-12754805 None:intergenic 25.0%
! TTGATCCAATTGTGTATAAT+TGG + chr7_2:12754804-12754823 None:intergenic 25.0%
! AATGGTTGAAATTACATAGA+TGG + chr7_2:12754830-12754849 None:intergenic 25.0%
! CATTATATGAGATCTTTCAA+AGG - chr7_2:12755592-12755611 Msa1049440:intron 25.0%
!!! AATGGAATTTTTTTTACCTG+AGG + chr7_2:12755652-12755671 None:intergenic 25.0%
! CAGGACAAAAAAACAAAATT+AGG + chr7_2:12755766-12755785 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr7_2:12756087-12756106 Msa1049440:three_prime_UTR 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr7_2:12756088-12756107 Msa1049440:three_prime_UTR 25.0%
! CATGATATGTAGATATTTCA+AGG + chr7_2:12756431-12756450 None:intergenic 25.0%
! AATCATGTGTCTGAATTTAA+AGG + chr7_2:12756676-12756695 None:intergenic 25.0%
! GTGAACCAAAAATATATTAG+TGG + chr7_2:12756807-12756826 None:intergenic 25.0%
!! AATTGATGCTTTTCAACTTA+TGG - chr7_2:12757281-12757300 Msa1049440:three_prime_UTR 25.0%
!! AATTGATTCCTGAAATATTG+TGG - chr7_2:12757394-12757413 Msa1049440:intron 25.0%
! AATTTATTCCATGTGTCTAT+AGG + chr7_2:12757552-12757571 None:intergenic 25.0%
!! CAGTAATCAAATCTAAAACA+AGG + chr7_2:12757875-12757894 None:intergenic 25.0%
! CAATCTCTTGTGTAAAAAAT+AGG - chr7_2:12758495-12758514 Msa1049440:intron 25.0%
!! CTTGGTAATAGCAAAAAAAA+GGG + chr7_2:12758602-12758621 None:intergenic 25.0%
!! ACTTGGTAATAGCAAAAAAA+AGG + chr7_2:12758603-12758622 None:intergenic 25.0%
!!! AGATTCTTTATCCCATTTTT+TGG - chr7_2:12758967-12758986 Msa1049440:intron 25.0%
!!! GATTCTTTATCCCATTTTTT+GGG - chr7_2:12758968-12758987 Msa1049440:intron 25.0%
!!! ATTCTTTATCCCATTTTTTG+GGG - chr7_2:12758969-12758988 Msa1049440:intron 25.0%
! TAAAATGTAATTCTGGTAAC+TGG - chr7_2:12759221-12759240 Msa1049440:intron 25.0%
! CATAGATGTTAACTAAATCA+AGG + chr7_2:12759350-12759369 None:intergenic 25.0%
!!! TTACTTTTCACTTTGTTGAT+CGG - chr7_2:12759478-12759497 Msa1049440:intron 25.0%
! TATCCGAAGTAGATTATTAT+TGG - chr7_2:12759512-12759531 Msa1049440:intron 25.0%
! AATTTGACGAAAAACGTATT+TGG - chr7_2:12760384-12760403 Msa1049440:intron 25.0%
! AAGTTTAGGTAATGATTGAT+TGG - chr7_2:12760414-12760433 Msa1049440:intron 25.0%
! AAATCATTCCATGTAGAAAA+AGG - chr7_2:12760882-12760901 Msa1049440:CDS 25.0%
! AAAGAATTAAAAAACCCTGA+TGG + chr7_2:12760921-12760940 None:intergenic 25.0%
!!! ATGGTTTTAAATTGCAATTG+TGG + chr7_2:12761552-12761571 None:intergenic 25.0%
! CTCATAAAAAATGAATGAAC+AGG + chr7_2:12761770-12761789 None:intergenic 25.0%
AAATTAAAATGTGCTCTCTC+TGG - chr7_2:12754499-12754518 Msa1049440:three_prime_UTR 30.0%
ATCCACCAATTATACACAAT+TGG - chr7_2:12754796-12754815 Msa1049440:three_prime_UTR 30.0%
ATCCAATTGTGTATAATTGG+TGG + chr7_2:12754801-12754820 None:intergenic 30.0%
! AACCATTTTCTACTTCTCAA+AGG - chr7_2:12754843-12754862 Msa1049440:three_prime_UTR 30.0%
! ACCATTTTCTACTTCTCAAA+GGG - chr7_2:12754844-12754863 Msa1049440:three_prime_UTR 30.0%
!! CTGATGTATGTTTTTGTTAC+AGG - chr7_2:12754975-12754994 Msa1049440:three_prime_UTR 30.0%
!! ATGTATGTTTTTGTTACAGG+TGG - chr7_2:12754978-12754997 Msa1049440:three_prime_UTR 30.0%
TCTCATATAATGAGAAGCAA+TGG + chr7_2:12755584-12755603 None:intergenic 30.0%
! TGAGATCTTTCAAAGGTTTT+TGG - chr7_2:12755599-12755618 Msa1049440:intron 30.0%
!!! ATTTTTTTTACCTGAGGAAC+AGG + chr7_2:12755646-12755665 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr7_2:12756180-12756199 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr7_2:12756179-12756198 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr7_2:12756164-12756183 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr7_2:12756025-12756044 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr7_2:12756164-12756183 Msa1049440:three_prime_UTR 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr7_2:12756179-12756198 Msa1049440:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr7_2:12756180-12756199 Msa1049440:intron 30.0%
! ATGTTTGAGATTGTTTGATG+TGG - chr7_2:12756780-12756799 Msa1049440:intron 30.0%
! GTGGTCCACTAATATATTTT+TGG - chr7_2:12756799-12756818 Msa1049440:intron 30.0%
! ATTGAAGAATTTTCCAACAC+CGG + chr7_2:12756841-12756860 None:intergenic 30.0%
TAAAAATCTCACATGTGTGT+GGG + chr7_2:12757254-12757273 None:intergenic 30.0%
TTAAAAATCTCACATGTGTG+TGG + chr7_2:12757255-12757274 None:intergenic 30.0%
! TTTCAACTTATGGTTCTATG+TGG - chr7_2:12757291-12757310 Msa1049440:three_prime_UTR 30.0%
TTAGTAGACCACAATATTTC+AGG + chr7_2:12757405-12757424 None:intergenic 30.0%
! TGAGCTATTTAGAGGTATAT+TGG + chr7_2:12757914-12757933 None:intergenic 30.0%
TAACTTAGTGAGCTATTTAG+AGG + chr7_2:12757922-12757941 None:intergenic 30.0%
!!! TCTGATTTTGTTTTGTTTGC+AGG - chr7_2:12758141-12758160 Msa1049440:intron 30.0%
! CTCTCTTCTCTTATCAATTT+TGG + chr7_2:12758187-12758206 None:intergenic 30.0%
ATATGCTATGGTAAACCTTA+GGG + chr7_2:12758261-12758280 None:intergenic 30.0%
TTCTCATCATAGATATGCTA+TGG + chr7_2:12758273-12758292 None:intergenic 30.0%
ATCACTATTACCAAGTTAGA+GGG - chr7_2:12758405-12758424 Msa1049440:intron 30.0%
! TCTGCTACTTAATGATAACT+TGG + chr7_2:12758620-12758639 None:intergenic 30.0%
TGCTATAATTTATAGGTTGC+TGG - chr7_2:12758678-12758697 Msa1049440:intron 30.0%
TATAATTTATAGGTTGCTGG+AGG - chr7_2:12758681-12758700 Msa1049440:intron 30.0%
ATAATTTATAGGTTGCTGGA+GGG - chr7_2:12758682-12758701 Msa1049440:intron 30.0%
TATTGGATGCAATCTTTCTT+TGG - chr7_2:12758767-12758786 Msa1049440:intron 30.0%
TATAAGTCTTTGTTACCAGA+AGG - chr7_2:12758810-12758829 Msa1049440:intron 30.0%
TGGTAAATCCCATATTTGTA+CGG + chr7_2:12758906-12758925 None:intergenic 30.0%
ACAAATATGGGATTTACCAA+TGG - chr7_2:12758907-12758926 Msa1049440:intron 30.0%
CAAATATGGGATTTACCAAT+GGG - chr7_2:12758908-12758927 Msa1049440:intron 30.0%
AAATAAGCCAATTTACCTGA+GGG + chr7_2:12759003-12759022 None:intergenic 30.0%
TAAACACTTGTCAAACTGTT+TGG - chr7_2:12759054-12759073 Msa1049440:intron 30.0%
AAACACTTGTCAAACTGTTT+GGG - chr7_2:12759055-12759074 Msa1049440:intron 30.0%
TTATTTCCATAAGTTCTCCA+GGG - chr7_2:12759125-12759144 Msa1049440:intron 30.0%
! GGAGTGTTAAAATGTAATTC+TGG - chr7_2:12759214-12759233 Msa1049440:intron 30.0%
CATCTTAATCTAACACATTG+AGG + chr7_2:12759294-12759313 None:intergenic 30.0%
AATCTTGATCCAACAATTGA+CGG - chr7_2:12759682-12759701 Msa1049440:intron 30.0%
AACTGTTTCATACTCAAACA+TGG - chr7_2:12759815-12759834 Msa1049440:intron 30.0%
!! TGAGACTATTTCTACTATGA+AGG - chr7_2:12759846-12759865 Msa1049440:intron 30.0%
! TCTTTCTTACCTTTTTGATG+AGG + chr7_2:12760095-12760114 None:intergenic 30.0%
GAAATTTATCCATCTTCTTG+AGG + chr7_2:12760157-12760176 None:intergenic 30.0%
! TCTTTCTTTTGAATCGTGAA+TGG - chr7_2:12760272-12760291 Msa1049440:intron 30.0%
TATTTGGCTACACTAAGTTT+AGG - chr7_2:12760400-12760419 Msa1049440:intron 30.0%
TCAAACAGATACTACTTATC+AGG + chr7_2:12760729-12760748 None:intergenic 30.0%
ATAAGTAGTATCTGTTTGAC+AGG - chr7_2:12760730-12760749 Msa1049440:CDS 30.0%
!! TTTGAAGTCCTTTTTCTACA+TGG + chr7_2:12760893-12760912 None:intergenic 30.0%
CTCTAATTATCTGTTTCACA+AGG + chr7_2:12760953-12760972 None:intergenic 30.0%
GTGAAACAGATAATTAGAGA+AGG - chr7_2:12760954-12760973 Msa1049440:CDS 30.0%
TGATTCAAGACAAACAAATG+TGG + chr7_2:12761153-12761172 None:intergenic 30.0%
AAATTTGTACCGGAAATGAT+CGG + chr7_2:12761219-12761238 None:intergenic 30.0%
TCTCATTTGCAAATTTGTAC+CGG + chr7_2:12761229-12761248 None:intergenic 30.0%
ATGATCATCTTGAATGATGA+AGG - chr7_2:12761432-12761451 Msa1049440:intron 30.0%
!! CCATATATTTCTGCATTTTG+CGG - chr7_2:12761497-12761516 Msa1049440:intron 30.0%
AACAATTTCAAAGGTCTGAA+GGG + chr7_2:12761674-12761693 None:intergenic 30.0%
TAACAATTTCAAAGGTCTGA+AGG + chr7_2:12761675-12761694 None:intergenic 30.0%
AAAGAGAGAAATAGTGATTC+AGG - chr7_2:12761732-12761751 Msa1049440:five_prime_UTR 30.0%
TTGGTGAAGTGAATTGAAAC+TGG + chr7_2:12754171-12754190 None:intergenic 35.0%
ATGAGAGAGTGATGAATCAA+AGG + chr7_2:12754358-12754377 None:intergenic 35.0%
TTTGATTCATCACTCTCTCA+TGG - chr7_2:12754357-12754376 Msa1049440:three_prime_UTR 35.0%
TACACTACTACAAGTCTACA+AGG + chr7_2:12754902-12754921 None:intergenic 35.0%
!! TGTTTTTGTTACAGGTGGAT+TGG - chr7_2:12754983-12755002 Msa1049440:three_prime_UTR 35.0%
!! TGGATTGGTGGAAAATTCTT+GGG - chr7_2:12754998-12755017 Msa1049440:three_prime_UTR 35.0%
!! GTTTTGGATTGGAACTAGAT+AGG + chr7_2:12755218-12755237 None:intergenic 35.0%
AGCAGTATCAAAGCCAAATT+GGG - chr7_2:12755258-12755277 Msa1049440:three_prime_UTR 35.0%
!!! TTTGCGATAATTTTTTGCGG+AGG + chr7_2:12755890-12755909 None:intergenic 35.0%
!! TAGTTGAGTCCACTTTTGAT+TGG - chr7_2:12757007-12757026 Msa1049440:intron 35.0%
AAAAATCTCACATGTGTGTG+GGG + chr7_2:12757253-12757272 None:intergenic 35.0%
ATTTGAGTCCTATAGACACA+TGG - chr7_2:12757541-12757560 Msa1049440:intron 35.0%
! ACATATGTGCAATTTTGCGT+GGG + chr7_2:12757818-12757837 None:intergenic 35.0%
CAAGGCAATAATCAAGTAAC+AGG + chr7_2:12757857-12757876 None:intergenic 35.0%
! TTTGTTTGCAGGTTGTGTTT+TGG - chr7_2:12758152-12758171 Msa1049440:intron 35.0%
TTTGTTCCAATTTCTCCCTA+AGG - chr7_2:12758243-12758262 Msa1049440:intron 35.0%
GATATGCTATGGTAAACCTT+AGG + chr7_2:12758262-12758281 None:intergenic 35.0%
AGAAGAATGCAAAAAGTCAC+AGG - chr7_2:12758289-12758308 Msa1049440:intron 35.0%
! CTAACTTGGTAATAGTGATG+AGG + chr7_2:12758404-12758423 None:intergenic 35.0%
CATCACTATTACCAAGTTAG+AGG - chr7_2:12758404-12758423 Msa1049440:intron 35.0%
TCACTATTACCAAGTTAGAG+GGG - chr7_2:12758406-12758425 Msa1049440:intron 35.0%
CTTGTGTAAAAAATAGGGCA+AGG - chr7_2:12758501-12758520 Msa1049440:intron 35.0%
TTGCGTACAATGCACTAAAA+TGG - chr7_2:12758524-12758543 Msa1049440:intron 35.0%
GTACAATGCACTAAAATGGT+GGG - chr7_2:12758528-12758547 Msa1049440:intron 35.0%
CCTATGTGTTTAGATGTTGA+CGG - chr7_2:12758879-12758898 Msa1049440:intron 35.0%
ATAAAGAATCTTGACAGCCA+AGG + chr7_2:12758958-12758977 None:intergenic 35.0%
GTCATCAAACCCCAAAAAAT+GGG + chr7_2:12758981-12759000 None:intergenic 35.0%
CAAATAAGCCAATTTACCTG+AGG + chr7_2:12759004-12759023 None:intergenic 35.0%
TGCAAGAATTAGTAGGGATT+AGG + chr7_2:12759378-12759397 None:intergenic 35.0%
! AAGTGCTGCAAGAATTAGTA+GGG + chr7_2:12759384-12759403 None:intergenic 35.0%
!! AAAGTGCTGCAAGAATTAGT+AGG + chr7_2:12759385-12759404 None:intergenic 35.0%
! ACTAATTCTTGCAGCACTTT+TGG - chr7_2:12759385-12759404 Msa1049440:intron 35.0%
AATAATCTACTTCGGATACC+TGG + chr7_2:12759510-12759529 None:intergenic 35.0%
! GTGACTTTTGGATCAAGAAT+AGG - chr7_2:12759586-12759605 Msa1049440:intron 35.0%
! ACTTTTGGATCAAGAATAGG+CGG - chr7_2:12759589-12759608 Msa1049440:intron 35.0%
ATTGCGAAAATGTATGGTGT+GGG - chr7_2:12759712-12759731 Msa1049440:intron 35.0%
! GTCGAATTTGTTTCATTTGC+AGG + chr7_2:12760124-12760143 None:intergenic 35.0%
ATCTTCTTGAGGCAACTTTA+CGG + chr7_2:12760146-12760165 None:intergenic 35.0%
AATAGCAGGTTATCAAATCC+AGG - chr7_2:12760228-12760247 Msa1049440:intron 35.0%
TCAGATTCACAATTTGAACC+TGG + chr7_2:12760249-12760268 None:intergenic 35.0%
CTAATTCAGTATGACGATTC+TGG + chr7_2:12760447-12760466 None:intergenic 35.0%
TCTCTAGTGTGTGTCTATTT+GGG + chr7_2:12760510-12760529 None:intergenic 35.0%
ATCTCTAGTGTGTGTCTATT+TGG + chr7_2:12760511-12760530 None:intergenic 35.0%
CAGATACTACTTATCAGGAA+AGG + chr7_2:12760724-12760743 None:intergenic 35.0%
TCATCCAAGTTGTGAAACAA+TGG + chr7_2:12760758-12760777 None:intergenic 35.0%
GACTTCAAAAATGTCCATCA+GGG - chr7_2:12760904-12760923 Msa1049440:CDS 35.0%
! CTTGAATCAACTGAAGCATT+CGG - chr7_2:12761164-12761183 Msa1049440:intron 35.0%
GGTACAAATTTGCAAATGAG+AGG - chr7_2:12761228-12761247 Msa1049440:intron 35.0%
AAATGAGAGGCTAAAGAGAA+CGG - chr7_2:12761241-12761260 Msa1049440:intron 35.0%
! AACTTGCTTATAGACGTTAC+AGG - chr7_2:12761312-12761331 Msa1049440:intron 35.0%
CTGCAATGTTCATGTCAATT+AGG - chr7_2:12761405-12761424 Msa1049440:intron 35.0%
CATCATTCAAGATGATCATG+TGG + chr7_2:12761431-12761450 None:intergenic 35.0%
CCGCAAAATGCAGAAATATA+TGG + chr7_2:12761500-12761519 None:intergenic 35.0%
TTAAATTGCAATTGTGGTCG+CGG + chr7_2:12761546-12761565 None:intergenic 35.0%
ATGGACACAAGTTTATCACA+TGG + chr7_2:12761571-12761590 None:intergenic 35.0%
GATAAACTTGTGTCCATGAT+TGG - chr7_2:12761574-12761593 Msa1049440:intron 35.0%
!! AGAGTGGATGGTAGTGTTTT+GGG + chr7_2:12754137-12754156 None:intergenic 40.0%
!! TAGAGTGGATGGTAGTGTTT+TGG + chr7_2:12754138-12754157 None:intergenic 40.0%
! AGCACATGGTTTGTAAGTGT+TGG + chr7_2:12754275-12754294 None:intergenic 40.0%
ACATGAAAGAGAGAGTGAGA+GGG + chr7_2:12754322-12754341 None:intergenic 40.0%
TACATGAAAGAGAGAGTGAG+AGG + chr7_2:12754323-12754342 None:intergenic 40.0%
! GAAATTGGTAGAGTGATGGA+TGG + chr7_2:12754434-12754453 None:intergenic 40.0%
GGATGAAATTGGTAGAGTGA+TGG + chr7_2:12754438-12754457 None:intergenic 40.0%
! AAGATCAGATGGAGTACTAC+TGG - chr7_2:12754595-12754614 Msa1049440:three_prime_UTR 40.0%
! GCCCTTTGAGAAGTAGAAAA+TGG + chr7_2:12754848-12754867 None:intergenic 40.0%
!!! TTTTGTTACAGGTGGATTGG+TGG - chr7_2:12754986-12755005 Msa1049440:three_prime_UTR 40.0%
!! GTGGATTGGTGGAAAATTCT+TGG - chr7_2:12754997-12755016 Msa1049440:three_prime_UTR 40.0%
TTGGTGGAAAATTCTTGGGA+AGG - chr7_2:12755002-12755021 Msa1049440:three_prime_UTR 40.0%
! ACGTTGTTGATTGTGTTGCT+AGG + chr7_2:12755031-12755050 None:intergenic 40.0%
AGCAACACAATCAACAACGT+TGG - chr7_2:12755031-12755050 Msa1049440:three_prime_UTR 40.0%
GATTGGAACTAGATAGGAAC+CGG + chr7_2:12755212-12755231 None:intergenic 40.0%
! TACTGCTCTTGCGAATTTTC+CGG + chr7_2:12755245-12755264 None:intergenic 40.0%
GAGCAGTATCAAAGCCAAAT+TGG - chr7_2:12755257-12755276 Msa1049440:three_prime_UTR 40.0%
GCAGTATCAAAGCCAAATTG+GGG - chr7_2:12755259-12755278 Msa1049440:three_prime_UTR 40.0%
! AAGCCAAATTGGGGAGTTTT+AGG - chr7_2:12755268-12755287 Msa1049440:three_prime_UTR 40.0%
TTGCCTAAAACTCCCCAATT+TGG + chr7_2:12755274-12755293 None:intergenic 40.0%
! TTTTTCTACGCGCTGTCTAT+AGG - chr7_2:12755382-12755401 Msa1049440:intron 40.0%
! TTTTCTACGCGCTGTCTATA+GGG - chr7_2:12755383-12755402 Msa1049440:intron 40.0%
CCACCATCCATATACAAACA+CGG + chr7_2:12755421-12755440 None:intergenic 40.0%
! GTATATGGATGGTGGTTTAG+CGG - chr7_2:12755426-12755445 Msa1049440:intron 40.0%
CGGTGCATTTGTTTCATGTT+TGG - chr7_2:12755482-12755501 Msa1049440:intron 40.0%
!! AATCGCTTGTTGTTGGATGT+GGG - chr7_2:12755536-12755555 Msa1049440:intron 40.0%
TGTTATTCTTCCTGTTCCTC+AGG - chr7_2:12755633-12755652 Msa1049440:intron 40.0%
TTGAGTAGGGACTAATACTC+AGG + chr7_2:12755785-12755804 None:intergenic 40.0%
! CACATATGTGCAATTTTGCG+TGG + chr7_2:12757819-12757838 None:intergenic 40.0%
GGTAAACCTTAGGGAGAAAT+TGG + chr7_2:12758252-12758271 None:intergenic 40.0%
AAAGTCACAGGCTACATCTT+TGG - chr7_2:12758301-12758320 Msa1049440:intron 40.0%
CACTATTACCAAGTTAGAGG+GGG - chr7_2:12758407-12758426 Msa1049440:intron 40.0%
TTACACAAGAGATTGCTTCC+AGG + chr7_2:12758490-12758509 None:intergenic 40.0%
CGTACAATGCACTAAAATGG+TGG - chr7_2:12758527-12758546 Msa1049440:intron 40.0%
TTCTTTCACACTGCTGTTGA+AGG + chr7_2:12758746-12758765 None:intergenic 40.0%
CAGCAGTGTGAAAGAACTAT+TGG - chr7_2:12758750-12758769 Msa1049440:intron 40.0%
TCTTTCTTTGGCATGTTCAG+AGG - chr7_2:12758779-12758798 Msa1049440:intron 40.0%
TTGTTACCAGAAGGAACGAT+TGG - chr7_2:12758819-12758838 Msa1049440:intron 40.0%
CCGTCAACATCTAAACACAT+AGG + chr7_2:12758882-12758901 None:intergenic 40.0%
! TTGACGGACCGTACAAATAT+GGG - chr7_2:12758895-12758914 Msa1049440:intron 40.0%
AAGGAATTGCTGGATATGAC+AGG + chr7_2:12758939-12758958 None:intergenic 40.0%
TGTCATATCCAGCAATTCCT+TGG - chr7_2:12758938-12758957 Msa1049440:intron 40.0%
GGTCATCAAACCCCAAAAAA+TGG + chr7_2:12758982-12759001 None:intergenic 40.0%
! TTGATGACCCTCAGGTAAAT+TGG - chr7_2:12758993-12759012 Msa1049440:intron 40.0%
! AAACTGTTTGGGAGAGCTTT+TGG - chr7_2:12759066-12759085 Msa1049440:intron 40.0%
ATCTTGAACCCACAAGTAAC+TGG - chr7_2:12759413-12759432 Msa1049440:intron 40.0%
ACTTCTAGCCAGTTACTTGT+GGG + chr7_2:12759424-12759443 None:intergenic 40.0%
TTTGTTGATCGGAAACATCC+AGG - chr7_2:12759489-12759508 Msa1049440:intron 40.0%
ATGAATGTGCGAGTTGTGAT+TGG + chr7_2:12759551-12759570 None:intergenic 40.0%
CATTCATGCAATCAGCACAT+TGG - chr7_2:12759564-12759583 Msa1049440:intron 40.0%
!! ATCAGCACATTGGTGACTTT+TGG - chr7_2:12759574-12759593 Msa1049440:intron 40.0%
TTGATCCAACAATTGACGGA+GGG - chr7_2:12759686-12759705 Msa1049440:intron 40.0%
GGGATGATTGCGAAAATGTA+TGG - chr7_2:12759706-12759725 Msa1049440:intron 40.0%
GATTGCGAAAATGTATGGTG+TGG - chr7_2:12759711-12759730 Msa1049440:intron 40.0%
ACTCTTTGTCTTAATCGGGA+AGG + chr7_2:12759958-12759977 None:intergenic 40.0%
CCGAACTCTTTGTCTTAATC+GGG + chr7_2:12759962-12759981 None:intergenic 40.0%
CCCGATTAAGACAAAGAGTT+CGG - chr7_2:12759959-12759978 Msa1049440:intron 40.0%
GCCGAACTCTTTGTCTTAAT+CGG + chr7_2:12759963-12759982 None:intergenic 40.0%
! GCATTTTGAACGTCAGAGAT+GGG - chr7_2:12759981-12760000 Msa1049440:intron 40.0%
ACTGATCAAAGACTTACCTG+AGG - chr7_2:12760032-12760051 Msa1049440:intron 40.0%
CTGATCAAAGACTTACCTGA+GGG - chr7_2:12760033-12760052 Msa1049440:intron 40.0%
! TTTTGATGAGGTCCAAGCAA+AGG + chr7_2:12760083-12760102 None:intergenic 40.0%
TTGCTTGGACCTCATCAAAA+AGG - chr7_2:12760083-12760102 Msa1049440:intron 40.0%
GTAAAGTTGCCTCAAGAAGA+TGG - chr7_2:12760145-12760164 Msa1049440:intron 40.0%
GGTACCATTGTTTCACAACT+TGG - chr7_2:12760751-12760770 Msa1049440:CDS 40.0%
TTCTTGACAACATCTGTGAC+AGG - chr7_2:12760783-12760802 Msa1049440:CDS 40.0%
TCTTGACAACATCTGTGACA+GGG - chr7_2:12760784-12760803 Msa1049440:CDS 40.0%
TCATCTCGAGAGAAGACTAA+AGG + chr7_2:12760815-12760834 None:intergenic 40.0%
AGTCTTCTCTCGAGATGAAA+AGG - chr7_2:12760817-12760836 Msa1049440:CDS 40.0%
GGACTTCAAAAATGTCCATC+AGG - chr7_2:12760903-12760922 Msa1049440:CDS 40.0%
CGAAACCAAAGTCTAAGCAA+AGG - chr7_2:12761023-12761042 Msa1049440:CDS 40.0%
CAATGCCTTTGCTTAGACTT+TGG + chr7_2:12761031-12761050 None:intergenic 40.0%
TAGGCGATGAACTACTTTCT+TGG - chr7_2:12761084-12761103 Msa1049440:intron 40.0%
TAAGACGTCCGTTTATTGAC+CGG - chr7_2:12761111-12761130 Msa1049440:intron 40.0%
GTCTTGATGCTCAAAACTTG+AGG - chr7_2:12761186-12761205 Msa1049440:intron 40.0%
GGTACATAACCGATCATTTC+CGG - chr7_2:12761207-12761226 Msa1049440:intron 40.0%
GCAGAAATATATGGCTGATG+TGG + chr7_2:12761491-12761510 None:intergenic 40.0%
AAGTACAAGGCAGCCTTAAA+AGG + chr7_2:12761812-12761831 None:intergenic 40.0%
! ATGTGACAGTGAAGAGCACA+TGG + chr7_2:12754289-12754308 None:intergenic 45.0%
AAAGAGAGAGTGAGAGGGTA+GGG + chr7_2:12754317-12754336 None:intergenic 45.0%
!! AGAGTGATGGATGGTACCTA+GGG + chr7_2:12754425-12754444 None:intergenic 45.0%
!! TAGAGTGATGGATGGTACCT+AGG + chr7_2:12754426-12754445 None:intergenic 45.0%
! ACTCCACCATGCTGATTACT+GGG + chr7_2:12755102-12755121 None:intergenic 45.0%
TGTTACGCATGCACACAAGT+TGG - chr7_2:12755121-12755140 Msa1049440:intron 45.0%
! ACTGCTCTTGCGAATTTTCC+GGG + chr7_2:12755244-12755263 None:intergenic 45.0%
GACAGCGCGTAGAAAAACAA+AGG + chr7_2:12755379-12755398 None:intergenic 45.0%
TCGCCGTGTTTGTATATGGA+TGG - chr7_2:12755415-12755434 Msa1049440:intron 45.0%
CCGTGTTTGTATATGGATGG+TGG - chr7_2:12755418-12755437 Msa1049440:intron 45.0%
!! TCGAGAGAATCGCTTGTTGT+TGG - chr7_2:12755529-12755548 Msa1049440:intron 45.0%
!! GAATCGCTTGTTGTTGGATG+TGG - chr7_2:12755535-12755554 Msa1049440:intron 45.0%
TGGTTCACATGTTGTCTCTC+CGG - chr7_2:12756819-12756838 Msa1049440:intron 45.0%
!!! TTTGCAGGTTGTGTTTTGGC+TGG - chr7_2:12758156-12758175 Msa1049440:intron 45.0%
GCTACATCTTTGGCACCATT+TGG - chr7_2:12758311-12758330 Msa1049440:intron 45.0%
ACATCTTTGGCACCATTTGG+TGG - chr7_2:12758314-12758333 Msa1049440:intron 45.0%
CATCTTTGGCACCATTTGGT+GGG - chr7_2:12758315-12758334 Msa1049440:intron 45.0%
! ATCTTTGGCACCATTTGGTG+GGG - chr7_2:12758316-12758335 Msa1049440:intron 45.0%
GTTGTTGCCATGTGACTGAA+AGG - chr7_2:12758450-12758469 Msa1049440:intron 45.0%
TAGCAAAAAAAAGGGCAGCC+CGG + chr7_2:12758594-12758613 None:intergenic 45.0%
TTCTTTGGCATGTTCAGAGG+AGG - chr7_2:12758782-12758801 Msa1049440:intron 45.0%
GGATTTCCAATCGTTCCTTC+TGG + chr7_2:12758828-12758847 None:intergenic 45.0%
GGAACGATTGGAAATCCATG+TGG - chr7_2:12758831-12758850 Msa1049440:intron 45.0%
ACGATTGGAAATCCATGTGG+TGG - chr7_2:12758834-12758853 Msa1049440:intron 45.0%
ATCGTTGAGTTTCCACCACA+TGG + chr7_2:12758849-12758868 None:intergenic 45.0%
! GTTGACGGACCGTACAAATA+TGG - chr7_2:12758894-12758913 Msa1049440:intron 45.0%
!! ATATGACAGGAAGTGCCCAT+TGG + chr7_2:12758926-12758945 None:intergenic 45.0%
AAGCTACCCTGGAGAACTTA+TGG + chr7_2:12759134-12759153 None:intergenic 45.0%
!! GCTGTTTTCATAAGCTACCC+TGG + chr7_2:12759145-12759164 None:intergenic 45.0%
CACTTCTAGCCAGTTACTTG+TGG + chr7_2:12759425-12759444 None:intergenic 45.0%
AGCATATGCATTGTACTCGC+TGG - chr7_2:12759451-12759470 Msa1049440:intron 45.0%
CTTGATCCAACAATTGACGG+AGG - chr7_2:12759685-12759704 Msa1049440:intron 45.0%
ATCATCCCTCCGTCAATTGT+TGG + chr7_2:12759694-12759713 None:intergenic 45.0%
GGTATTCCTACATGCAGTCA+TGG - chr7_2:12759867-12759886 Msa1049440:intron 45.0%
TCTTTGCCATGACTGCATGT+AGG + chr7_2:12759876-12759895 None:intergenic 45.0%
TGAGATGTCGTGACATGGAA+TGG - chr7_2:12759911-12759930 Msa1049440:intron 45.0%
! GGCATTTTGAACGTCAGAGA+TGG - chr7_2:12759980-12759999 Msa1049440:intron 45.0%
! TTTTGAACGTCAGAGATGGG+CGG - chr7_2:12759984-12760003 Msa1049440:intron 45.0%
AAGACTTACCTGAGGGTTTG+AGG - chr7_2:12760040-12760059 Msa1049440:intron 45.0%
!! CCCAATTCCTCAAGTTTTGG+CGG + chr7_2:12760628-12760647 None:intergenic 45.0%
CCGCCAAAACTTGAGGAATT+GGG - chr7_2:12760625-12760644 Msa1049440:CDS 45.0%
CGCCAAAACTTGAGGAATTG+GGG - chr7_2:12760626-12760645 Msa1049440:CDS 45.0%
! CACCCCAATTCCTCAAGTTT+TGG + chr7_2:12760631-12760650 None:intergenic 45.0%
ATGAACACCATCCTTGGTAC+AGG + chr7_2:12760984-12761003 None:intergenic 45.0%
CGAACAATGAACACCATCCT+TGG + chr7_2:12760990-12761009 None:intergenic 45.0%
AGGATGGTGTTCATTGTTCG+CGG - chr7_2:12760990-12761009 Msa1049440:CDS 45.0%
GGTCAATAAACGGACGTCTT+AGG + chr7_2:12761112-12761131 None:intergenic 45.0%
AAGACAAACAAATGTGGCCG+AGG + chr7_2:12761147-12761166 None:intergenic 45.0%
CGAGATACTACTCGTCGAAT+TGG - chr7_2:12761264-12761283 Msa1049440:intron 45.0%
ACTCGTCGAATTGGAGAACA+TGG - chr7_2:12761273-12761292 Msa1049440:intron 45.0%
CTCGTCGAATTGGAGAACAT+GGG - chr7_2:12761274-12761293 Msa1049440:intron 45.0%
CTTATAGACGTTACAGGCAG+AGG - chr7_2:12761318-12761337 Msa1049440:intron 45.0%
TTATCCCTTACAGGAGTCAC+CGG + chr7_2:12761353-12761372 None:intergenic 45.0%
GTGACTCCTGTAAGGGATAA+TGG - chr7_2:12761353-12761372 Msa1049440:intron 45.0%
! ACTCCTGTAAGGGATAATGG+AGG - chr7_2:12761356-12761375 Msa1049440:intron 45.0%
!!! TATAAGTAAATTTTTTTTAT+AGG - chr7_2:12756119-12756138 Msa1049440:three_prime_UTR 5.0%
!!! ATAAGTAAATTTTTTTTATA+GGG - chr7_2:12756120-12756139 Msa1049440:three_prime_UTR 5.0%
!!! TATTTTTTGATTAAATAATA+TGG - chr7_2:12757679-12757698 Msa1049440:intron 5.0%
!!! ATTTATTTGATTTTTTATTT+TGG - chr7_2:12761611-12761630 Msa1049440:intron 5.0%
!!! TTTATTTGATTTTTTATTTT+GGG - chr7_2:12761612-12761631 Msa1049440:intron 5.0%
GTTACGCAACGTAGAGTGGA+TGG + chr7_2:12754149-12754168 None:intergenic 50.0%
ACTGGTTACGCAACGTAGAG+TGG + chr7_2:12754153-12754172 None:intergenic 50.0%
GAAAGAGAGAGTGAGAGGGT+AGG + chr7_2:12754318-12754337 None:intergenic 50.0%
CGACAACCCAGTAATCAGCA+TGG - chr7_2:12755093-12755112 Msa1049440:intron 50.0%
CAACCCAGTAATCAGCATGG+TGG - chr7_2:12755096-12755115 Msa1049440:intron 50.0%
! CACTCCACCATGCTGATTAC+TGG + chr7_2:12755103-12755122 None:intergenic 50.0%
ACAGTTGTCACCAACCCGAA+TGG - chr7_2:12755176-12755195 Msa1049440:intron 50.0%
CAGTTGTCACCAACCCGAAT+GGG - chr7_2:12755177-12755196 Msa1049440:intron 50.0%
TGGAACTAGATAGGAACCGG+CGG + chr7_2:12755209-12755228 None:intergenic 50.0%
GTTCCAATCCAAAACCGTCC+CGG - chr7_2:12755223-12755242 Msa1049440:intron 50.0%
!!! TTTCCGGGACGGTTTTGGAT+TGG + chr7_2:12755229-12755248 None:intergenic 50.0%
! CGAATTTTCCGGGACGGTTT+TGG + chr7_2:12755234-12755253 None:intergenic 50.0%
! CTCTTGCGAATTTTCCGGGA+CGG + chr7_2:12755240-12755259 None:intergenic 50.0%
AATTGCACGCGCTTGCTTCT+TGG + chr7_2:12755307-12755326 None:intergenic 50.0%
CGCTGTCTATAGGGAGAGAA+GGG - chr7_2:12755392-12755411 Msa1049440:intron 50.0%
AGGGTCGCCGTGTTTGTATA+TGG - chr7_2:12755411-12755430 Msa1049440:intron 50.0%
! TATGGATGGTGGTTTAGCGG+CGG - chr7_2:12755429-12755448 Msa1049440:intron 50.0%
TGGTTTAGCGGCGGTTGTTA+CGG - chr7_2:12755438-12755457 Msa1049440:intron 50.0%
TTGGATGTGGGAAACTCGTG+TGG - chr7_2:12755548-12755567 Msa1049440:intron 50.0%
TGGATGTGGGAAACTCGTGT+GGG - chr7_2:12755549-12755568 Msa1049440:intron 50.0%
ACATGTTGTCTCTCCGGTGT+TGG - chr7_2:12756825-12756844 Msa1049440:intron 50.0%
GAGTCCAAATCCCCACCAAA+TGG + chr7_2:12758329-12758348 None:intergenic 50.0%
CCTGTGACCTTTCAGTCACA+TGG + chr7_2:12758460-12758479 None:intergenic 50.0%
CCATGTGACTGAAAGGTCAC+AGG - chr7_2:12758457-12758476 Msa1049440:intron 50.0%
AAGGTCACAGGTTCAAGTCC+TGG - chr7_2:12758469-12758488 Msa1049440:intron 50.0%
! AAAATGGTGGGACTCCTTCC+CGG - chr7_2:12758540-12758559 Msa1049440:intron 50.0%
CTAAAGTTCCCGCATACGCA+GGG + chr7_2:12758567-12758586 None:intergenic 50.0%
ACTAAAGTTCCCGCATACGC+AGG + chr7_2:12758568-12758587 None:intergenic 50.0%
ATGCGGGAACTTTAGTGCAC+CGG - chr7_2:12758572-12758591 Msa1049440:intron 50.0%
! TATAGGTTGCTGGAGGGTGT+TGG - chr7_2:12758688-12758707 Msa1049440:intron 50.0%
CTTGACAGCCAAGGAATTGC+TGG + chr7_2:12758949-12758968 None:intergenic 50.0%
! TTTGGGGTTTGATGACCCTC+AGG - chr7_2:12758985-12759004 Msa1049440:intron 50.0%
GATGTCGTGACATGGAATGG+TGG - chr7_2:12759914-12759933 Msa1049440:intron 50.0%
!! GTGACATGGAATGGTGGATG+AGG - chr7_2:12759920-12759939 Msa1049440:intron 50.0%
!! ACATGGAATGGTGGATGAGG+AGG - chr7_2:12759923-12759942 Msa1049440:intron 50.0%
ATGTCTCTCCTCAAACCCTC+AGG + chr7_2:12760051-12760070 None:intergenic 50.0%
TGATGAGGTCCAAGCAAAGG+TGG + chr7_2:12760080-12760099 None:intergenic 50.0%
!! CAAGTTTTGGCGGCTTCACA+AGG + chr7_2:12760618-12760637 None:intergenic 50.0%
TGTGAAGCCGCCAAAACTTG+AGG - chr7_2:12760618-12760637 Msa1049440:CDS 50.0%
GCCGCCAAAACTTGAGGAAT+TGG - chr7_2:12760624-12760643 Msa1049440:CDS 50.0%
GAGAAGGTGATCCTGTACCA+AGG - chr7_2:12760970-12760989 Msa1049440:CDS 50.0%
AGGTGATCCTGTACCAAGGA+TGG - chr7_2:12760974-12760993 Msa1049440:CDS 50.0%
! CTAAGAAACCTCCTGGTTCG+AGG + chr7_2:12761067-12761086 None:intergenic 50.0%
CTCGAACCAGGAGGTTTCTT+AGG - chr7_2:12761065-12761084 Msa1049440:intron 50.0%
TCATCGCCTAAGAAACCTCC+TGG + chr7_2:12761074-12761093 None:intergenic 50.0%
GCTGGAAGCCGGTCAATAAA+CGG + chr7_2:12761122-12761141 None:intergenic 50.0%
GTGCCTCCATTATCCCTTAC+AGG + chr7_2:12761362-12761381 None:intergenic 50.0%
!! ATAATGGAGGCACTGAGCGT+AGG - chr7_2:12761369-12761388 Msa1049440:intron 50.0%
CTAGGGAGAGAGGAGAAGGT+GGG + chr7_2:12754408-12754427 None:intergenic 55.0%
GTACCTAGGGAGAGAGGAGA+AGG + chr7_2:12754412-12754431 None:intergenic 55.0%
TGGATGGTACCTAGGGAGAG+AGG + chr7_2:12754418-12754437 None:intergenic 55.0%
TGGGTTGTCGTCTGCTGAGA+CGG + chr7_2:12755083-12755102 None:intergenic 55.0%
ACAACTGTCTGCACAGCTGG+TGG + chr7_2:12755164-12755183 None:intergenic 55.0%
GTGACAACTGTCTGCACAGC+TGG + chr7_2:12755167-12755186 None:intergenic 55.0%
ATCCAACCGCGCGTTGTTGT+TGG - chr7_2:12755327-12755346 Msa1049440:intron 55.0%
GCGCTGTCTATAGGGAGAGA+AGG - chr7_2:12755391-12755410 Msa1049440:intron 55.0%
TTTAGCGGCGGTTGTTACGG+TGG - chr7_2:12755441-12755460 Msa1049440:intron 55.0%
CACATGTGTGTGGGGCTGTA+GGG + chr7_2:12757245-12757264 None:intergenic 55.0%
TCACATGTGTGTGGGGCTGT+AGG + chr7_2:12757246-12757265 None:intergenic 55.0%
! GGCACCATTTGGTGGGGATT+TGG - chr7_2:12758322-12758341 Msa1049440:intron 55.0%
CCAAAGCTCCCCCTCTAACT+TGG + chr7_2:12758418-12758437 None:intergenic 55.0%
CCAAGTTAGAGGGGGAGCTT+TGG - chr7_2:12758415-12758434 Msa1049440:intron 55.0%
TGCGGGAACTTTAGTGCACC+GGG - chr7_2:12758573-12758592 Msa1049440:intron 55.0%
! GGTGTGGGATTAGTGACGAC+AGG - chr7_2:12759727-12759746 Msa1049440:intron 55.0%
GCAGCTGAGATGTCGTGACA+TGG - chr7_2:12759906-12759925 Msa1049440:intron 55.0%
!! TGGAATGGTGGATGAGGAGG+AGG - chr7_2:12759926-12759945 Msa1049440:intron 55.0%
CATCTCATCCTCTCCTCCCA+TGG + chr7_2:12760010-12760029 None:intergenic 55.0%
CATGGGAGGAGAGGATGAGA+TGG - chr7_2:12760008-12760027 Msa1049440:intron 55.0%
CATCAAGCGCCACCTTTGCT+TGG - chr7_2:12760068-12760087 Msa1049440:intron 55.0%
GCAACTAGTGTCCTCGAACC+AGG - chr7_2:12761053-12761072 Msa1049440:intron 55.0%
ACTAGTGTCCTCGAACCAGG+AGG - chr7_2:12761056-12761075 Msa1049440:intron 55.0%
ACAAATGTGGCCGAGGAAGC+TGG + chr7_2:12761140-12761159 None:intergenic 55.0%
CGTTACAGGCAGAGGACTAG+AGG - chr7_2:12761326-12761345 Msa1049440:intron 55.0%
AGGTCCGGTGACTCCTGTAA+GGG - chr7_2:12761346-12761365 Msa1049440:intron 55.0%
GAGAGAGGAGAAGGTGGGCA+TGG + chr7_2:12754403-12754422 None:intergenic 60.0%
CCTAGGGAGAGAGGAGAAGG+TGG + chr7_2:12754409-12754428 None:intergenic 60.0%
CCACCTTCTCCTCTCTCCCT+AGG - chr7_2:12754406-12754425 Msa1049440:three_prime_UTR 60.0%
GGTGACAGCAGTGATGACCC+TGG - chr7_2:12755052-12755071 Msa1049440:three_prime_UTR 60.0%
CTGCTGAGACGGCAACTCCA+GGG + chr7_2:12755072-12755091 None:intergenic 60.0%
TCTGCTGAGACGGCAACTCC+AGG + chr7_2:12755073-12755092 None:intergenic 60.0%
CAGCTGGTGGAGTGGAACAC+TGG + chr7_2:12755151-12755170 None:intergenic 60.0%
TGTCTGCACAGCTGGTGGAG+TGG + chr7_2:12755159-12755178 None:intergenic 60.0%
GGTTGTTACGGTGGCGCGTA+CGG - chr7_2:12755450-12755469 Msa1049440:intron 60.0%
! GAGGGGGAGCTTTGGTGCAA+CGG - chr7_2:12758423-12758442 Msa1049440:intron 60.0%
! TGACCGGCTTCCAGCTTCCT+CGG - chr7_2:12761127-12761146 Msa1049440:intron 60.0%
CAGGCAGAGGACTAGAGGTC+CGG - chr7_2:12761331-12761350 Msa1049440:intron 60.0%
GAGGTCCGGTGACTCCTGTA+AGG - chr7_2:12761345-12761364 Msa1049440:intron 60.0%
CGGACGCTTCCCATTCGGGT+TGG + chr7_2:12755189-12755208 None:intergenic 65.0%
ACCGGCGGACGCTTCCCATT+CGG + chr7_2:12755194-12755213 None:intergenic 65.0%
CGCCAACAACAACGCGCGGT+TGG + chr7_2:12755332-12755351 None:intergenic 65.0%
CACGCGCCAACAACAACGCG+CGG + chr7_2:12755336-12755355 None:intergenic 65.0%
!! GTTGGCGCGTGGTGTTGCTC+TGG - chr7_2:12755345-12755364 Msa1049440:intron 65.0%
TGTTACGGTGGCGCGTACGG+TGG - chr7_2:12755453-12755472 Msa1049440:intron 65.0%
! GGCGCGTACGGTGGTTGATG+CGG - chr7_2:12755462-12755481 Msa1049440:intron 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr7_2:12758555-12758574 Msa1049440:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr7_2:12758556-12758575 Msa1049440:intron 65.0%
TTCCCGCATACGCAGGGTCC+GGG + chr7_2:12758561-12758580 None:intergenic 65.0%
GTTCCCGCATACGCAGGGTC+CGG + chr7_2:12758562-12758581 None:intergenic 65.0%
ACGTCAGAGATGGGCGGCCA+TGG - chr7_2:12759990-12760009 Msa1049440:intron 65.0%
CGTCAGAGATGGGCGGCCAT+GGG - chr7_2:12759991-12760010 Msa1049440:intron 65.0%
TGGCCGAGGAAGCTGGAAGC+CGG + chr7_2:12761133-12761152 None:intergenic 65.0%
CCGGCGGACGCTTCCCATTC+GGG + chr7_2:12755193-12755212 None:intergenic 70.0%
!! CCCGAATGGGAAGCGTCCGC+CGG - chr7_2:12755190-12755209 Msa1049440:intron 70.0%
! CGCGCGTTGTTGTTGGCGCG+TGG - chr7_2:12755334-12755353 Msa1049440:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr7_2:12758557-12758576 None:intergenic 70.0%
CAGAGATGGGCGGCCATGGG+AGG - chr7_2:12759994-12760013 Msa1049440:intron 70.0%
ATGGGCGGCCATGGGAGGAG+AGG - chr7_2:12759999-12760018 Msa1049440:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 12754125 12761939 12754125 ID=Msa1049440;Name=Msa1049440
chr7_2 mRNA 12754125 12761939 12754125 ID=Msa1049440-mRNA-1;Parent=Msa1049440;Name=Msa1049440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=277|0.85|0.87|1|0.85|1|8|1893|230
chr7_2 exon 12754125 12755101 12754125 ID=Msa1049440-mRNA-1:exon:3191;Parent=Msa1049440-mRNA-1
chr7_2 exon 12755226 12755312 12755226 ID=Msa1049440-mRNA-1:exon:3190;Parent=Msa1049440-mRNA-1
chr7_2 exon 12755960 12756196 12755960 ID=Msa1049440-mRNA-1:exon:3189;Parent=Msa1049440-mRNA-1
chr7_2 exon 12756554 12756665 12756554 ID=Msa1049440-mRNA-1:exon:3188;Parent=Msa1049440-mRNA-1
chr7_2 exon 12757058 12757371 12757058 ID=Msa1049440-mRNA-1:exon:3187;Parent=Msa1049440-mRNA-1
chr7_2 exon 12757686 12757901 12757686 ID=Msa1049440-mRNA-1:exon:3186;Parent=Msa1049440-mRNA-1
chr7_2 exon 12760451 12761067 12760451 ID=Msa1049440-mRNA-1:exon:3185;Parent=Msa1049440-mRNA-1
chr7_2 exon 12761637 12761939 12761637 ID=Msa1049440-mRNA-1:exon:3184;Parent=Msa1049440-mRNA-1
chr7_2 five_prime_UTR 12761663 12761939 12761663 ID=Msa1049440-mRNA-1:five_prime_utr;Parent=Msa1049440-mRNA-1
chr7_2 CDS 12761637 12761662 12761637 ID=Msa1049440-mRNA-1:cds;Parent=Msa1049440-mRNA-1
chr7_2 CDS 12760451 12761067 12760451 ID=Msa1049440-mRNA-1:cds;Parent=Msa1049440-mRNA-1
chr7_2 CDS 12757852 12757901 12757852 ID=Msa1049440-mRNA-1:cds;Parent=Msa1049440-mRNA-1
chr7_2 three_prime_UTR 12757686 12757851 12757686 ID=Msa1049440-mRNA-1:three_prime_utr;Parent=Msa1049440-mRNA-1
chr7_2 three_prime_UTR 12757058 12757371 12757058 ID=Msa1049440-mRNA-1:three_prime_utr;Parent=Msa1049440-mRNA-1
chr7_2 three_prime_UTR 12756554 12756665 12756554 ID=Msa1049440-mRNA-1:three_prime_utr;Parent=Msa1049440-mRNA-1
chr7_2 three_prime_UTR 12755960 12756196 12755960 ID=Msa1049440-mRNA-1:three_prime_utr;Parent=Msa1049440-mRNA-1
chr7_2 three_prime_UTR 12755226 12755312 12755226 ID=Msa1049440-mRNA-1:three_prime_utr;Parent=Msa1049440-mRNA-1
chr7_2 three_prime_UTR 12754125 12755101 12754125 ID=Msa1049440-mRNA-1:three_prime_utr;Parent=Msa1049440-mRNA-1
Gene Sequence

>Msa1049440

ATGCCCACCTTCTCCTCTCTCCCTAGGTGGATTGGTGGAAAATTCTTGGGAAGGAATCCTAGCAACACAATCAACAACGTTGGTGACAGCAGTGATGACCCTGGAGTTGCCGTCTCAGCAGACGACAACCCAGTAATCAGCATGGTGGAGTGTTACGCATGCACACAAGTTGGTGTGCCAGTGTTCCACTCCACCAGCTGTGCAGACAGTTGTCACCAACCCGAATGGGAAGCGTCCGCCGGTTCCTATCTAGTTCCAATCCAAAACCGTCCCGGAAAATTCGCAAGAGCAGTATCAAAGCCAAATTGGGGAGTTTTAGGCAAAGTATTAGATCCAAGAAGCAAGCGCGTGCAATTATCCAACCGCGCGTTGTTGTTGGCGCGTGGTGTTGCTCTGGCTATTGATCCTTTGTTTTTCTACGCGCTGTCTATAGGGAGAGAAGGGTCGCCGTGTTTGTATATGGATGGTGGTTTAGCGGCGGTTGTTACGGTGGCGCGTACGGTGGTTGATGCGGTGCATTTGTTTCATGTTTGGTTGCAGTTTAGATTAGCGTATGTGTCGAGAGAATCGCTTGTTGTTGGATGTGGGAAACTCGTGTGGGACGCACGTGCCATTGCTTCTCATTATATGAGATCTTTCAAAGGTTGTGTTTTGGCTGGTAGTACCAAAATTGATAAGAGAAGAGAGAATTAA
Protein sequence

>Msa1049440

MPTFSSLPRWIGGKFLGRNPSNTINNVGDSSDDPGVAVSADDNPVISMVECYACTQVGVPVFHSTSCADSCHQPEWEASAGSYLVPIQNRPGKFARAVSKPNWGVLGKVLDPRSKRVQLSNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAVVTVARTVVDAVHLFHVWLQFRLAYVSRESLVVGCGKLVWDARAIASHYMRSFKGCVLAGSTKIDKRREN*