Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124840 | XP_013450057.1 | 84.416 | 462 | 21 | 3 | 1 | 411 | 1 | 462 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124840 | sp|Q8S9J0|TAUE4_ARATH | 61.978 | 455 | 121 | 3 | 5 | 411 | 9 | 459 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124840 | A0A072UE30 | 84.416 | 462 | 21 | 3 | 1 | 411 | 1 | 462 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039200 | Msa1124840 | 0.812062 | 5.121531e-51 | -8.615850e-47 |
| Msa0086820 | Msa1124840 | 0.811958 | 5.396514e-51 | -8.615850e-47 |
| Msa0133670 | Msa1124840 | 0.811399 | 7.138419e-51 | -8.615850e-47 |
| Msa0133880 | Msa1124840 | 0.815047 | 1.129021e-51 | -8.615850e-47 |
| Msa0146600 | Msa1124840 | 0.800295 | 1.540813e-48 | -8.615850e-47 |
| Msa0184120 | Msa1124840 | 0.810069 | 1.384692e-50 | -8.615850e-47 |
| Msa0473450 | Msa1124840 | 0.804141 | 2.491294e-49 | -8.615850e-47 |
| Msa0475360 | Msa1124840 | 0.826192 | 3.104112e-54 | -8.615850e-47 |
| Msa1024580 | Msa1124840 | 0.809586 | 1.758236e-50 | -8.615850e-47 |
| Msa1049440 | Msa1124840 | 0.827982 | 1.157653e-54 | -8.615850e-47 |
| Msa1079900 | Msa1124840 | 0.952612 | 1.664758e-110 | -8.615850e-47 |
| Msa0327150 | Msa1124840 | 0.809730 | 1.637652e-50 | -8.615850e-47 |
| Msa1123340 | Msa1124840 | 0.816443 | 5.514733e-52 | -8.615850e-47 |
| Msa1124840 | Msa1167560 | 0.950608 | 1.158775e-108 | -8.615850e-47 |
| Msa1124840 | Msa1286660 | 0.808050 | 3.746934e-50 | -8.615850e-47 |
| Msa1124840 | Msa1343310 | 0.808497 | 3.008496e-50 | -8.615850e-47 |
| Msa1124840 | Msa1413220 | 0.811308 | 7.470399e-51 | -8.615850e-47 |
| Msa0558890 | Msa1124840 | 0.810945 | 8.953349e-51 | -8.615850e-47 |
| Msa0568490 | Msa1124840 | 0.830883 | 2.285456e-55 | -8.615850e-47 |
| Msa0923910 | Msa1124840 | 0.812286 | 4.576284e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124840 | MtrunA17_Chr7g0265481 | 84.416 | 462 | 21 | 3 | 1 | 411 | 1 | 462 | 0.0 | 732 |
| Msa1124840 | MtrunA17_Chr1g0179621 | 61.064 | 470 | 117 | 7 | 1 | 410 | 1 | 464 | 0.0 | 515 |
| Msa1124840 | MtrunA17_Chr3g0139541 | 44.144 | 444 | 181 | 10 | 21 | 408 | 34 | 466 | 1.61e-99 | 304 |
| Msa1124840 | MtrunA17_Chr8g0373471 | 42.548 | 416 | 177 | 5 | 45 | 408 | 60 | 465 | 4.11e-98 | 301 |
| Msa1124840 | MtrunA17_Chr5g0403901 | 52.510 | 259 | 115 | 3 | 45 | 301 | 67 | 319 | 2.80e-77 | 247 |
| Msa1124840 | MtrunA17_Chr5g0403901 | 47.945 | 73 | 38 | 0 | 338 | 410 | 398 | 470 | 3.13e-15 | 77.4 |
| Msa1124840 | MtrunA17_Chr8g0380211 | 45.048 | 313 | 150 | 5 | 22 | 323 | 41 | 342 | 3.18e-73 | 236 |
| Msa1124840 | MtrunA17_Chr8g0380211 | 48.611 | 72 | 37 | 0 | 338 | 409 | 405 | 476 | 8.15e-11 | 63.5 |
| Msa1124840 | MtrunA17_Chr1g0157751 | 44.727 | 275 | 142 | 3 | 35 | 301 | 34 | 306 | 4.21e-69 | 225 |
| Msa1124840 | MtrunA17_Chr1g0157751 | 50.704 | 71 | 35 | 0 | 338 | 408 | 385 | 455 | 1.75e-14 | 75.1 |
| Msa1124840 | MtrunA17_Chr8g0380191 | 35.260 | 346 | 141 | 5 | 107 | 409 | 10 | 315 | 5.77e-53 | 179 |
| Msa1124840 | MtrunA17_Chr2g0280401 | 30.081 | 246 | 149 | 5 | 53 | 280 | 55 | 295 | 2.07e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124840 | AT2G36630.1 | 61.978 | 455 | 121 | 3 | 5 | 411 | 9 | 459 | 0.0 | 516 |
| Msa1124840 | AT2G25737.1 | 45.388 | 412 | 161 | 6 | 51 | 408 | 71 | 472 | 1.97e-96 | 297 |
| Msa1124840 | AT2G25737.2 | 51.049 | 286 | 124 | 3 | 51 | 330 | 71 | 346 | 7.68e-83 | 258 |
| Msa1124840 | AT1G11540.2 | 28.472 | 288 | 184 | 6 | 1 | 279 | 1 | 275 | 1.87e-24 | 105 |
| Msa1124840 | AT4G21250.1 | 30.000 | 290 | 174 | 5 | 29 | 301 | 18 | 295 | 3.39e-24 | 104 |
| Msa1124840 | AT1G11540.1 | 30.000 | 200 | 123 | 4 | 89 | 279 | 1 | 192 | 2.48e-23 | 100 |
| Msa1124840 | AT1G61740.1 | 28.873 | 284 | 176 | 7 | 7 | 279 | 11 | 279 | 1.09e-22 | 100 |
| Msa1124840 | AT4G21260.1 | 25.831 | 391 | 216 | 12 | 27 | 389 | 30 | 374 | 1.62e-20 | 93.2 |
Find 120 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAAGGTCTTTCTTTA+AGG | 0.115168 | 7_3:+76054878 | Msa1124840:CDS |
| AGTGTTCAATTGCGAATTTC+TGG | 0.132938 | 7_3:-76054034 | None:intergenic |
| CCTATGCTTACTCTTATTAT+TGG | 0.163814 | 7_3:+76054410 | Msa1124840:CDS |
| CATGAATTTATGGGATTCTT+AGG | 0.177443 | 7_3:+76056953 | Msa1124840:CDS |
| CTATTGCACTAGTGGTATTT+TGG | 0.180174 | 7_3:+76055833 | Msa1124840:CDS |
| GATACAGAACCATGAATTTA+TGG | 0.181257 | 7_3:+76056943 | Msa1124840:CDS |
| AGAAAATTGCTTAGAATTCT+TGG | 0.183484 | 7_3:+76056723 | Msa1124840:CDS |
| TCTTAAGTGGAAAAGGATTT+TGG | 0.208098 | 7_3:+76055395 | Msa1124840:CDS |
| GCCTCAATTATTGGCTTTCT+AGG | 0.224694 | 7_3:+76054338 | Msa1124840:CDS |
| CTTGCTTTGGCCTCAATTAT+TGG | 0.227645 | 7_3:+76054329 | Msa1124840:CDS |
| CTTACTACTTCAGGTCATTA+AGG | 0.231663 | 7_3:+76055443 | Msa1124840:CDS |
| GGCTTTCTAGGATCTGCTTT+TGG | 0.237402 | 7_3:+76054350 | Msa1124840:CDS |
| GGTTTCTTTCTTACTACTTC+AGG | 0.259142 | 7_3:+76055434 | Msa1124840:CDS |
| TGTGCACTCTGTGGAATCTT+AGG | 0.276638 | 7_3:+76055964 | Msa1124840:CDS |
| CTATGTGGCCAATTCATTGC+TGG | 0.304955 | 7_3:+76057378 | Msa1124840:three_prime_UTR |
| TTGTTGGATGACGCACTCTT+AGG | 0.313192 | 7_3:-76054611 | None:intergenic |
| GTTATTTATAGGTATGATAA+TGG | 0.318227 | 7_3:+76054560 | Msa1124840:intron |
| CTTCCCTTCTATAAGATTTG+TGG | 0.319559 | 7_3:+76057450 | Msa1124840:three_prime_UTR |
| CCTCTTCACAGTGTCTGTTT+TGG | 0.327724 | 7_3:+76056674 | Msa1124840:CDS |
| CACACAGATGCTACACTATT+AGG | 0.337660 | 7_3:-76057226 | None:intergenic |
| GTTGGAGGGCTACTTGGTTC+TGG | 0.338070 | 7_3:+76055994 | Msa1124840:CDS |
| TCTTCAAGGTCTTTCTTTAA+GGG | 0.338871 | 7_3:+76054879 | Msa1124840:CDS |
| GCCTAGTTGGAGACTTGCTT+TGG | 0.339589 | 7_3:+76054316 | Msa1124840:CDS |
| TATTTATTACTTGAAGGAAA+TGG | 0.343166 | 7_3:-76057124 | None:intergenic |
| TCAACCACAAATCTTATAGA+AGG | 0.349150 | 7_3:-76057454 | None:intergenic |
| GCTAGATCATAATCTAATAT+TGG | 0.349834 | 7_3:-76054642 | None:intergenic |
| CAAAATACCACTAGTGCAAT+AGG | 0.361717 | 7_3:-76055832 | None:intergenic |
| ATCATTGTATTCATCCTCTC+AGG | 0.365275 | 7_3:+76056756 | Msa1124840:CDS |
| TAGCTTTATTTATTACTTGA+AGG | 0.379140 | 7_3:-76057130 | None:intergenic |
| ATACAGAACCATGAATTTAT+GGG | 0.379494 | 7_3:+76056944 | Msa1124840:CDS |
| GAGGTAGAGGATGAATGTTT+TGG | 0.388535 | 7_3:-76054070 | None:intergenic |
| ATCTTAGGTGGGACCGTTGG+AGG | 0.395223 | 7_3:+76055979 | Msa1124840:CDS |
| AGGTCTGTAGTGTATGGTAT+TGG | 0.397964 | 7_3:+76055570 | Msa1124840:CDS |
| TCATTGCTGGCTACATTTGA+AGG | 0.398571 | 7_3:+76057391 | Msa1124840:three_prime_UTR |
| CTAAGAATCCCATAAATTCA+TGG | 0.406431 | 7_3:-76056952 | None:intergenic |
| GTTCCAATCTTAAGTGGAAA+AGG | 0.406736 | 7_3:+76055388 | Msa1124840:CDS |
| AAGCTTCACATATACATTCC+AGG | 0.407619 | 7_3:-76055909 | None:intergenic |
| GAGAATCGCAACGGAGAAAC+CGG | 0.412752 | 7_3:-76054097 | None:intergenic |
| AAATGTAGCCAGCAATGAAT+TGG | 0.414231 | 7_3:-76057386 | None:intergenic |
| AAAAGCTTGTATAAATTTCA+AGG | 0.418704 | 7_3:+76057042 | Msa1124840:three_prime_UTR |
| TATACCATTGGTCCTACTAT+TGG | 0.423259 | 7_3:+76057561 | Msa1124840:three_prime_UTR |
| TTGTTAATTGCAGAAAGAAA+TGG | 0.424199 | 7_3:+76055017 | Msa1124840:intron |
| GGGACCGTTGGAGGGCTACT+TGG | 0.428854 | 7_3:+76055988 | Msa1124840:CDS |
| TTCATCCTCTACCTCGTATC+CGG | 0.430162 | 7_3:+76054078 | Msa1124840:CDS |
| TGCAGGAATTGGAGCCTAGT+TGG | 0.431727 | 7_3:+76054303 | Msa1124840:intron |
| TTATTTATAGGTATGATAAT+GGG | 0.441362 | 7_3:+76054561 | Msa1124840:intron |
| TTTGGATAGGAACTTCTTCA+AGG | 0.444034 | 7_3:+76054865 | Msa1124840:intron |
| GGTCTGTAGTGTATGGTATT+GGG | 0.447058 | 7_3:+76055571 | Msa1124840:CDS |
| ACCGTTGGTGGTGTTGGTGG+TGG | 0.448909 | 7_3:+76054374 | Msa1124840:CDS |
| GGGAGGGAGTAACGTTGTTA+TGG | 0.452115 | 7_3:-76053990 | None:intergenic |
| GTTGGTGGTGTTGGTGGTGG+TGG | 0.454327 | 7_3:+76054377 | Msa1124840:CDS |
| ATCCTTCTTGTTGGTCAACT+AGG | 0.460286 | 7_3:-76057101 | None:intergenic |
| TACATACCTGTAAGGAGAAA+AGG | 0.464417 | 7_3:-76055595 | None:intergenic |
| TCTCCATCTCTTCAATTCCA+TGG | 0.464521 | 7_3:+76054165 | Msa1124840:CDS |
| TTTCAACCTATGCTTATGCT+TGG | 0.465503 | 7_3:+76054672 | Msa1124840:CDS |
| TATGTGAAGCTTCAATTGAA+TGG | 0.468378 | 7_3:+76055920 | Msa1124840:CDS |
| TCAGTTTCCTATTGCACTAG+TGG | 0.468918 | 7_3:+76055825 | Msa1124840:intron |
| AGGACAGTGATGAGCCAGTA+AGG | 0.475643 | 7_3:-76054729 | None:intergenic |
| TTTGGAACCGTTGGTGGTGT+TGG | 0.485288 | 7_3:+76054368 | Msa1124840:CDS |
| GGAAAGAGCAGCAGCAGACT+TGG | 0.486427 | 7_3:-76054441 | None:intergenic |
| CTTATGCTTGGTATCACTGT+TGG | 0.488422 | 7_3:+76054684 | Msa1124840:CDS |
| CAGGTGTAATTGGCATTGAA+AGG | 0.499649 | 7_3:+76056909 | Msa1124840:intron |
| TTCTCTTCTCTAGGTACCAA+CGG | 0.500513 | 7_3:-76055244 | None:intergenic |
| GGAACCGTTGGTGGTGTTGG+TGG | 0.502109 | 7_3:+76054371 | Msa1124840:CDS |
| TTTGCTAGTGCTCTCACCAT+GGG | 0.514375 | 7_3:+76056786 | Msa1124840:CDS |
| AGGAAATGGATCCTTCTTGT+TGG | 0.515190 | 7_3:-76057110 | None:intergenic |
| TTTGGTGTTAATGATTGTGT+GGG | 0.524681 | 7_3:+76055413 | Msa1124840:CDS |
| GCTTGTATAAATTTCAAGGT+AGG | 0.530853 | 7_3:+76057046 | Msa1124840:three_prime_UTR |
| GCTCCAAAACCGATAAAACT+TGG | 0.532182 | 7_3:+76054187 | Msa1124840:CDS |
| GAAAGAAGAGACTCTTCTAA+AGG | 0.532361 | 7_3:+76054914 | Msa1124840:CDS |
| CTATGAAAAGAATAATGATA+AGG | 0.533759 | 7_3:-76054749 | None:intergenic |
| GCACTCTGTGGAATCTTAGG+TGG | 0.534981 | 7_3:+76055967 | Msa1124840:CDS |
| TCAATGTTTATGTTTCTATG+TGG | 0.537008 | 7_3:+76057363 | Msa1124840:three_prime_UTR |
| CACAAATCTTATAGAAGGGA+AGG | 0.537098 | 7_3:-76057449 | None:intergenic |
| TAGAGAAGAGAAAACTCCTA+TGG | 0.538536 | 7_3:+76055255 | Msa1124840:CDS |
| TATTATCATACATACCTGTA+AGG | 0.538695 | 7_3:-76055603 | None:intergenic |
| GAGGATGAGTACAGGAAACC+TGG | 0.540526 | 7_3:+76055891 | Msa1124840:CDS |
| CACTCTGTGGAATCTTAGGT+GGG | 0.542197 | 7_3:+76055968 | Msa1124840:CDS |
| TGGAAATGATAATATACCAT+TGG | 0.545275 | 7_3:+76057549 | Msa1124840:three_prime_UTR |
| TACAAGAAGAGGATGAGTAC+AGG | 0.547246 | 7_3:+76055883 | Msa1124840:CDS |
| ACCACCACCAACACCACCAA+CGG | 0.547510 | 7_3:-76054375 | None:intergenic |
| GTCATCATATCATAAATCAC+TGG | 0.551279 | 7_3:-76056988 | None:intergenic |
| AAGGCAGCGTTGATGAATGC+TGG | 0.554316 | 7_3:+76057072 | Msa1124840:three_prime_UTR |
| GAGCCATGGAATTGAAGAGA+TGG | 0.559296 | 7_3:-76054168 | None:intergenic |
| GTCCACAGTACACCAATAGT+AGG | 0.560407 | 7_3:-76057573 | None:intergenic |
| GAGGATGAATACAATGATTG+AGG | 0.567259 | 7_3:-76056751 | None:intergenic |
| TGTGCTGCTTCAATGACTCT+AGG | 0.567982 | 7_3:-76057165 | None:intergenic |
| TCTTAGGTGGGACCGTTGGA+GGG | 0.569227 | 7_3:+76055980 | Msa1124840:CDS |
| TGGTTTGCAGAATGATGTCA+AGG | 0.570401 | 7_3:+76055550 | Msa1124840:intron |
| TCCTAGAAAGCCAATAATTG+AGG | 0.572327 | 7_3:-76054339 | None:intergenic |
| TCATTGTATTCATCCTCTCA+GGG | 0.573524 | 7_3:+76056757 | Msa1124840:CDS |
| CAACAAAAGACACAGAGGGA+GGG | 0.589945 | 7_3:-76054006 | None:intergenic |
| CAACCACAAATCTTATAGAA+GGG | 0.590107 | 7_3:-76057453 | None:intergenic |
| TACCTAGTTGACCAACAAGA+AGG | 0.590340 | 7_3:+76057099 | Msa1124840:three_prime_UTR |
| TCTTTAAGGGAACTGAGATG+TGG | 0.592420 | 7_3:+76054892 | Msa1124840:CDS |
| GGAGGGCTACTTGGTTCTGG+AGG | 0.593688 | 7_3:+76055997 | Msa1124840:CDS |
| TGACACGGAATATGATCCGT+TGG | 0.595281 | 7_3:+76055228 | Msa1124840:CDS |
| ATGTCAAGGTCTGTAGTGTA+TGG | 0.599994 | 7_3:+76055564 | Msa1124840:CDS |
| ACAACAAAAGACACAGAGGG+AGG | 0.600323 | 7_3:-76054007 | None:intergenic |
| AGAAACCGGATACGAGGTAG+AGG | 0.604035 | 7_3:-76054083 | None:intergenic |
| TGAAGCAATGAAGTTGTACA+AGG | 0.607163 | 7_3:+76055858 | Msa1124840:CDS |
| TGTACAAGGATTACAAGAAG+AGG | 0.614235 | 7_3:+76055872 | Msa1124840:CDS |
| CCAAAACAGACACTGTGAAG+AGG | 0.614270 | 7_3:-76056674 | None:intergenic |
| GCCAAAGCAAGTCTCCAACT+AGG | 0.614402 | 7_3:-76054317 | None:intergenic |
| CAACGGAGAAACCGGATACG+AGG | 0.616746 | 7_3:-76054089 | None:intergenic |
| TTTCTGTATTCAATAAACAA+AGG | 0.617243 | 7_3:+76057418 | Msa1124840:three_prime_UTR |
| GGAATCTTAGGTGGGACCGT+TGG | 0.618283 | 7_3:+76055976 | Msa1124840:CDS |
| TACACCAATAGTAGGACCAA+TGG | 0.620417 | 7_3:-76057565 | None:intergenic |
| GGACAGTGATGAGCCAGTAA+GGG | 0.622892 | 7_3:-76054728 | None:intergenic |
| AGAACCAAGTAGCCCTCCAA+CGG | 0.623795 | 7_3:-76055992 | None:intergenic |
| GTGATACCAAGCATAAGCAT+AGG | 0.629811 | 7_3:-76054678 | None:intergenic |
| CCAATAATAAGAGTAAGCAT+AGG | 0.636816 | 7_3:-76054410 | None:intergenic |
| TAAATTTCAAGGTAGGACAA+AGG | 0.643520 | 7_3:+76057053 | Msa1124840:three_prime_UTR |
| ATTGCAGAAAGAAATGGCAA+AGG | 0.644245 | 7_3:+76055023 | Msa1124840:intron |
| AACAACAACAAAAGACACAG+AGG | 0.648660 | 7_3:-76054011 | None:intergenic |
| ACAACAACAAAAGACACAGA+GGG | 0.648796 | 7_3:-76054010 | None:intergenic |
| GTCCTACTATTGGTGTACTG+TGG | 0.660317 | 7_3:+76057571 | Msa1124840:three_prime_UTR |
| ATATGCAGTTCTAATTGACA+CGG | 0.678566 | 7_3:+76055213 | Msa1124840:intron |
| AAGAGCGGAGAGAATCGCAA+CGG | 0.698430 | 7_3:-76054106 | None:intergenic |
| CATTGTATTCATCCTCTCAG+GGG | 0.714050 | 7_3:+76056758 | Msa1124840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTATATATATGATTT+TGG | + | chr7_3:76055530-76055549 | Msa1124840:intron | 10.0% |
| !! | TTATTTATAGGTATGATAAT+GGG | + | chr7_3:76054561-76054580 | Msa1124840:intron | 15.0% |
| !! | AAAAAGAAAAGACATATATT+CGG | - | chr7_3:76054848-76054867 | None:intergenic | 15.0% |
| !!! | ATCTATTTTCAAATTTATGT+TGG | + | chr7_3:76055092-76055111 | Msa1124840:intron | 15.0% |
| !! | AAATGAAAAATATACAAATC+TGG | + | chr7_3:76055152-76055171 | Msa1124840:intron | 15.0% |
| !!! | CAAAGAGTTAATGTTTTTAA+CGG | - | chr7_3:76054273-76054292 | None:intergenic | 20.0% |
| !! | AAAACGGAATTAATTACATT+TGG | - | chr7_3:76054465-76054484 | None:intergenic | 20.0% |
| !!! | AATTAATTCCGTTTTACATA+AGG | + | chr7_3:76054470-76054489 | Msa1124840:intron | 20.0% |
| !! | AAATGAAACCTTATGTAAAA+CGG | - | chr7_3:76054481-76054500 | None:intergenic | 20.0% |
| !!! | TTGTTGACTATGTTATTTAT+AGG | + | chr7_3:76054549-76054568 | Msa1124840:intron | 20.0% |
| !! | GTTATTTATAGGTATGATAA+TGG | + | chr7_3:76054560-76054579 | Msa1124840:intron | 20.0% |
| !! | CTATGAAAAGAATAATGATA+AGG | - | chr7_3:76054752-76054771 | None:intergenic | 20.0% |
| !!! | CTTATCATTATTCTTTTCAT+AGG | + | chr7_3:76054750-76054769 | Msa1124840:CDS | 20.0% |
| !!! | GAATATATGTCTTTTCTTTT+TGG | + | chr7_3:76054847-76054866 | Msa1124840:intron | 20.0% |
| !! | AAATTTATGTTGGATTCATT+AGG | + | chr7_3:76055102-76055121 | Msa1124840:intron | 20.0% |
| !!! | GAAGTTTTAATTAATACCAT+AGG | - | chr7_3:76055274-76055293 | None:intergenic | 20.0% |
| !! | TAAAACTTTCATCTACTTAT+TGG | + | chr7_3:76055312-76055331 | Msa1124840:intron | 20.0% |
| !! | AATTAATAGAAATAGTAGAG+AGG | - | chr7_3:76055475-76055494 | None:intergenic | 20.0% |
| !! | CAAATTGTACTTTATGAAAT+TGG | - | chr7_3:76055631-76055650 | None:intergenic | 20.0% |
| !! | ATGTAATGATGAAGTTAATT+TGG | + | chr7_3:76055665-76055684 | Msa1124840:intron | 20.0% |
| !! | TGTAATGATGAAGTTAATTT+GGG | + | chr7_3:76055666-76055685 | Msa1124840:intron | 20.0% |
| !!! | AGCTAGTATTCTTTTAAAAA+AGG | - | chr7_3:76055777-76055796 | None:intergenic | 20.0% |
| !! | CTTAAGTTATAGTAATACAT+AGG | + | chr7_3:76056850-76056869 | Msa1124840:intron | 20.0% |
| !! | AAAAGCTTGTATAAATTTCA+AGG | + | chr7_3:76057042-76057061 | Msa1124840:three_prime_UTR | 20.0% |
| !! | TATTTATTACTTGAAGGAAA+TGG | - | chr7_3:76057127-76057146 | None:intergenic | 20.0% |
| !!! | TAGCTTTATTTATTACTTGA+AGG | - | chr7_3:76057133-76057152 | None:intergenic | 20.0% |
| !! | TTTCTGTATTCAATAAACAA+AGG | + | chr7_3:76057418-76057437 | Msa1124840:three_prime_UTR | 20.0% |
| !! | ATTACACTTGTTTATATTTG+TGG | + | chr7_3:76057505-76057524 | Msa1124840:intron | 20.0% |
| !! | ATTCATTCAGTTGAAAAAAT+TGG | + | chr7_3:76057529-76057548 | Msa1124840:three_prime_UTR | 20.0% |
| !! | AATATTGGAACATCTTTTGT+TGG | - | chr7_3:76054630-76054649 | None:intergenic | 25.0% |
| ! | GCTAGATCATAATCTAATAT+TGG | - | chr7_3:76054645-76054664 | None:intergenic | 25.0% |
| !! | TATGTCTTTTCTTTTTGGAT+AGG | + | chr7_3:76054852-76054871 | Msa1124840:intron | 25.0% |
| ! | TTGTTAATTGCAGAAAGAAA+TGG | + | chr7_3:76055017-76055036 | Msa1124840:intron | 25.0% |
| ! | TATACAAATCTGGATTCATA+TGG | + | chr7_3:76055162-76055181 | Msa1124840:intron | 25.0% |
| !! | TATTTTGTTCCAATCTTAAG+TGG | + | chr7_3:76055382-76055401 | Msa1124840:CDS | 25.0% |
| ! | TATTATCATACATACCTGTA+AGG | - | chr7_3:76055606-76055625 | None:intergenic | 25.0% |
| ! | GTTGATTAGAAACAGATTTA+AGG | - | chr7_3:76056450-76056469 | None:intergenic | 25.0% |
| ! | GAGAACTGAGAATTAATTAA+AGG | - | chr7_3:76056477-76056496 | None:intergenic | 25.0% |
| ! | AGGACTGTATAGAAATTAAT+AGG | + | chr7_3:76056524-76056543 | Msa1124840:intron | 25.0% |
| ! | AGAAAATTGCTTAGAATTCT+TGG | + | chr7_3:76056723-76056742 | Msa1124840:CDS | 25.0% |
| ! | ATACAGAACCATGAATTTAT+GGG | + | chr7_3:76056944-76056963 | Msa1124840:CDS | 25.0% |
| !! | TCAATGTTTATGTTTCTATG+TGG | + | chr7_3:76057363-76057382 | Msa1124840:three_prime_UTR | 25.0% |
| ! | TGGAAATGATAATATACCAT+TGG | + | chr7_3:76057549-76057568 | Msa1124840:three_prime_UTR | 25.0% |
| ! | AGATGAATTTTCGTGGTAAT+TGG | - | chr7_3:76054148-76054167 | None:intergenic | 30.0% |
| CCAATAATAAGAGTAAGCAT+AGG | - | chr7_3:76054413-76054432 | None:intergenic | 30.0% | |
| CCTATGCTTACTCTTATTAT+TGG | + | chr7_3:76054410-76054429 | Msa1124840:CDS | 30.0% | |
| TTCTTCAAGGTCTTTCTTTA+AGG | + | chr7_3:76054878-76054897 | Msa1124840:CDS | 30.0% | |
| TCTTCAAGGTCTTTCTTTAA+GGG | + | chr7_3:76054879-76054898 | Msa1124840:CDS | 30.0% | |
| ! | ACAACTTTTGTTAATTCTCG+TGG | + | chr7_3:76055051-76055070 | Msa1124840:CDS | 30.0% |
| ! | CAACTTTTGTTAATTCTCGT+GGG | + | chr7_3:76055052-76055071 | Msa1124840:CDS | 30.0% |
| ! | AACTTTTGTTAATTCTCGTG+GGG | + | chr7_3:76055053-76055072 | Msa1124840:CDS | 30.0% |
| CAATTAGAACTGCATATTTC+AGG | - | chr7_3:76055210-76055229 | None:intergenic | 30.0% | |
| ! | ATATGCAGTTCTAATTGACA+CGG | + | chr7_3:76055213-76055232 | Msa1124840:intron | 30.0% |
| ACTTTCATCTACTTATTGGT+TGG | + | chr7_3:76055316-76055335 | Msa1124840:intron | 30.0% | |
| ! | AATCCTTTTCCACTTAAGAT+TGG | - | chr7_3:76055394-76055413 | None:intergenic | 30.0% |
| ! | TCTTAAGTGGAAAAGGATTT+TGG | + | chr7_3:76055395-76055414 | Msa1124840:CDS | 30.0% |
| !!! | TTTTGGTGTTAATGATTGTG+TGG | + | chr7_3:76055412-76055431 | Msa1124840:CDS | 30.0% |
| !! | TTTGGTGTTAATGATTGTGT+GGG | + | chr7_3:76055413-76055432 | Msa1124840:CDS | 30.0% |
| TATGTGAAGCTTCAATTGAA+TGG | + | chr7_3:76055920-76055939 | Msa1124840:CDS | 30.0% | |
| !! | AAGGTTTAAGAGTTGATGAA+AGG | - | chr7_3:76056431-76056450 | None:intergenic | 30.0% |
| CTGAGAATTAATTAAAGGCA+TGG | - | chr7_3:76056472-76056491 | None:intergenic | 30.0% | |
| !! | ACTTTTTCTCTTACAAGACA+TGG | - | chr7_3:76056501-76056520 | None:intergenic | 30.0% |
| !!! | ATTGCAACACTTTTTCTTTC+AGG | + | chr7_3:76056890-76056909 | Msa1124840:intron | 30.0% |
| !! | CTTTTTCTTTCAGGTGTAAT+TGG | + | chr7_3:76056899-76056918 | Msa1124840:intron | 30.0% |
| GATACAGAACCATGAATTTA+TGG | + | chr7_3:76056943-76056962 | Msa1124840:CDS | 30.0% | |
| CTAAGAATCCCATAAATTCA+TGG | - | chr7_3:76056955-76056974 | None:intergenic | 30.0% | |
| CATGAATTTATGGGATTCTT+AGG | + | chr7_3:76056953-76056972 | Msa1124840:CDS | 30.0% | |
| GTCATCATATCATAAATCAC+TGG | - | chr7_3:76056991-76057010 | None:intergenic | 30.0% | |
| GCTTGTATAAATTTCAAGGT+AGG | + | chr7_3:76057046-76057065 | Msa1124840:three_prime_UTR | 30.0% | |
| TAAATTTCAAGGTAGGACAA+AGG | + | chr7_3:76057053-76057072 | Msa1124840:three_prime_UTR | 30.0% | |
| CAACCACAAATCTTATAGAA+GGG | - | chr7_3:76057456-76057475 | None:intergenic | 30.0% | |
| TCAACCACAAATCTTATAGA+AGG | - | chr7_3:76057457-76057476 | None:intergenic | 30.0% | |
| ACAACAACAAAAGACACAGA+GGG | - | chr7_3:76054013-76054032 | None:intergenic | 35.0% | |
| AACAACAACAAAAGACACAG+AGG | - | chr7_3:76054014-76054033 | None:intergenic | 35.0% | |
| AGTGTTCAATTGCGAATTTC+TGG | - | chr7_3:76054037-76054056 | None:intergenic | 35.0% | |
| !!! | GATGAATGTTTTGGTGGAAA+AGG | - | chr7_3:76054064-76054083 | None:intergenic | 35.0% |
| ! | ATTTTGTGTGAGGTAAAGAG+CGG | - | chr7_3:76054124-76054143 | None:intergenic | 35.0% |
| ! | GGTAATTGGTATTTTGTGTG+AGG | - | chr7_3:76054134-76054153 | None:intergenic | 35.0% |
| AACGTGTTGTGAGTAACATA+CGG | - | chr7_3:76054214-76054233 | None:intergenic | 35.0% | |
| TCCTAGAAAGCCAATAATTG+AGG | - | chr7_3:76054342-76054361 | None:intergenic | 35.0% | |
| CAATGCTTGATTAGAAACAG+AGG | + | chr7_3:76054501-76054520 | Msa1124840:intron | 35.0% | |
| TTTCAACCTATGCTTATGCT+TGG | + | chr7_3:76054672-76054691 | Msa1124840:CDS | 35.0% | |
| !!! | TTAGTGTTGTTTTCCCTTAC+TGG | + | chr7_3:76054715-76054734 | Msa1124840:CDS | 35.0% |
| TTTGGATAGGAACTTCTTCA+AGG | + | chr7_3:76054865-76054884 | Msa1124840:intron | 35.0% | |
| GAAAGAAGAGACTCTTCTAA+AGG | + | chr7_3:76054914-76054933 | Msa1124840:CDS | 35.0% | |
| ATTGCAGAAAGAAATGGCAA+AGG | + | chr7_3:76055023-76055042 | Msa1124840:intron | 35.0% | |
| ! | ATAGGAGTTTTCTCTTCTCT+AGG | - | chr7_3:76055256-76055275 | None:intergenic | 35.0% |
| TAGAGAAGAGAAAACTCCTA+TGG | + | chr7_3:76055255-76055274 | Msa1124840:CDS | 35.0% | |
| ! | TCATCTACTTATTGGTTGGT+AGG | + | chr7_3:76055320-76055339 | Msa1124840:intron | 35.0% |
| GTTCCAATCTTAAGTGGAAA+AGG | + | chr7_3:76055388-76055407 | Msa1124840:CDS | 35.0% | |
| GGTTTCTTTCTTACTACTTC+AGG | + | chr7_3:76055434-76055453 | Msa1124840:CDS | 35.0% | |
| CTTACTACTTCAGGTCATTA+AGG | + | chr7_3:76055443-76055462 | Msa1124840:CDS | 35.0% | |
| TACATACCTGTAAGGAGAAA+AGG | - | chr7_3:76055598-76055617 | None:intergenic | 35.0% | |
| AACAGAGAGAAAAACATGCA+TGG | - | chr7_3:76055805-76055824 | None:intergenic | 35.0% | |
| CAAAATACCACTAGTGCAAT+AGG | - | chr7_3:76055835-76055854 | None:intergenic | 35.0% | |
| ! | CTATTGCACTAGTGGTATTT+TGG | + | chr7_3:76055833-76055852 | Msa1124840:CDS | 35.0% |
| TGAAGCAATGAAGTTGTACA+AGG | + | chr7_3:76055858-76055877 | Msa1124840:CDS | 35.0% | |
| TGTACAAGGATTACAAGAAG+AGG | + | chr7_3:76055872-76055891 | Msa1124840:CDS | 35.0% | |
| AAGCTTCACATATACATTCC+AGG | - | chr7_3:76055912-76055931 | None:intergenic | 35.0% | |
| TCTATATGTACTGTACCTGA+GGG | - | chr7_3:76056065-76056084 | None:intergenic | 35.0% | |
| ATCTAAATCCGCATGTGAAA+GGG | - | chr7_3:76056093-76056112 | None:intergenic | 35.0% | |
| AATCTAAATCCGCATGTGAA+AGG | - | chr7_3:76056094-76056113 | None:intergenic | 35.0% | |
| ! | GTCAAGCTTGGTATTTTATC+TGG | + | chr7_3:76056182-76056201 | Msa1124840:intron | 35.0% |
| AAATTGCCCAAGTCTAAGAA+GGG | - | chr7_3:76056287-76056306 | None:intergenic | 35.0% | |
| TAAATTGCCCAAGTCTAAGA+AGG | - | chr7_3:76056288-76056307 | None:intergenic | 35.0% | |
| ! | CTTGGGCAATTTAACTTACA+AGG | + | chr7_3:76056295-76056314 | Msa1124840:intron | 35.0% |
| !!! | CTTACAAGGATTTTGATTGC+AGG | + | chr7_3:76056309-76056328 | Msa1124840:intron | 35.0% |
| ! | GTTTTCATCATCATTGTCTG+TGG | + | chr7_3:76056363-76056382 | Msa1124840:intron | 35.0% |
| !! | TGAAAGGTACCATAAGGAAT+GGG | - | chr7_3:76056415-76056434 | None:intergenic | 35.0% |
| !! | ATGAAAGGTACCATAAGGAA+TGG | - | chr7_3:76056416-76056435 | None:intergenic | 35.0% |
| !! | AGTTGATGAAAGGTACCATA+AGG | - | chr7_3:76056421-76056440 | None:intergenic | 35.0% |
| CTTGTAAGAGAAAAAGTGAG+AGG | + | chr7_3:76056504-76056523 | Msa1124840:intron | 35.0% | |
| GAGGATGAATACAATGATTG+AGG | - | chr7_3:76056754-76056773 | None:intergenic | 35.0% | |
| ATCATTGTATTCATCCTCTC+AGG | + | chr7_3:76056756-76056775 | Msa1124840:CDS | 35.0% | |
| TCATTGTATTCATCCTCTCA+GGG | + | chr7_3:76056757-76056776 | Msa1124840:CDS | 35.0% | |
| ! | GAATCTGATTGATTTACCCA+TGG | - | chr7_3:76056805-76056824 | None:intergenic | 35.0% |
| ! | GACCAAAAAAGTGCACATTA+TGG | + | chr7_3:76057008-76057027 | Msa1124840:three_prime_UTR | 35.0% |
| !!! | CTCCATAATGTGCACTTTTT+TGG | - | chr7_3:76057013-76057032 | None:intergenic | 35.0% |
| AAATGTAGCCAGCAATGAAT+TGG | - | chr7_3:76057389-76057408 | None:intergenic | 35.0% | |
| CACAAATCTTATAGAAGGGA+AGG | - | chr7_3:76057452-76057471 | None:intergenic | 35.0% | |
| CTTCCCTTCTATAAGATTTG+TGG | + | chr7_3:76057450-76057469 | Msa1124840:three_prime_UTR | 35.0% | |
| TATACCATTGGTCCTACTAT+TGG | + | chr7_3:76057561-76057580 | Msa1124840:three_prime_UTR | 35.0% | |
| !! | GTAGAGGATGAATGTTTTGG+TGG | - | chr7_3:76054070-76054089 | None:intergenic | 40.0% |
| ! | GAGGTAGAGGATGAATGTTT+TGG | - | chr7_3:76054073-76054092 | None:intergenic | 40.0% |
| ! | GAGATGGAGATGAATTTTCG+TGG | - | chr7_3:76054155-76054174 | None:intergenic | 40.0% |
| TCTCCATCTCTTCAATTCCA+TGG | + | chr7_3:76054165-76054184 | Msa1124840:CDS | 40.0% | |
| !!! | TTTTATCGGTTTTGGAGCCA+TGG | - | chr7_3:76054185-76054204 | None:intergenic | 40.0% |
| GCTCCAAAACCGATAAAACT+TGG | + | chr7_3:76054187-76054206 | Msa1124840:CDS | 40.0% | |
| !! | ACATACGGGCCAAGTTTTAT+CGG | - | chr7_3:76054199-76054218 | None:intergenic | 40.0% |
| ACGTGTTGTGAGTAACATAC+GGG | - | chr7_3:76054213-76054232 | None:intergenic | 40.0% | |
| ! | CTCTTTGTTTGTTGCATTGC+AGG | + | chr7_3:76054286-76054305 | Msa1124840:intron | 40.0% |
| ! | GTTTGTTGCATTGCAGGAAT+TGG | + | chr7_3:76054292-76054311 | Msa1124840:intron | 40.0% |
| CTTGCTTTGGCCTCAATTAT+TGG | + | chr7_3:76054329-76054348 | Msa1124840:CDS | 40.0% | |
| !! | GCCTCAATTATTGGCTTTCT+AGG | + | chr7_3:76054338-76054357 | Msa1124840:CDS | 40.0% |
| GTGATACCAAGCATAAGCAT+AGG | - | chr7_3:76054681-76054700 | None:intergenic | 40.0% | |
| CTTATGCTTGGTATCACTGT+TGG | + | chr7_3:76054684-76054703 | Msa1124840:CDS | 40.0% | |
| ! | TCTTTAAGGGAACTGAGATG+TGG | + | chr7_3:76054892-76054911 | Msa1124840:CDS | 40.0% |
| TTCTCTTCTCTAGGTACCAA+CGG | - | chr7_3:76055247-76055266 | None:intergenic | 40.0% | |
| ! | TGGTTTGCAGAATGATGTCA+AGG | + | chr7_3:76055550-76055569 | Msa1124840:intron | 40.0% |
| ATGTCAAGGTCTGTAGTGTA+TGG | + | chr7_3:76055564-76055583 | Msa1124840:CDS | 40.0% | |
| AGGTCTGTAGTGTATGGTAT+TGG | + | chr7_3:76055570-76055589 | Msa1124840:CDS | 40.0% | |
| GGTCTGTAGTGTATGGTATT+GGG | + | chr7_3:76055571-76055590 | Msa1124840:CDS | 40.0% | |
| CGATATAGATCACGACATCA+TGG | - | chr7_3:76055742-76055761 | None:intergenic | 40.0% | |
| TCAGTTTCCTATTGCACTAG+TGG | + | chr7_3:76055825-76055844 | Msa1124840:intron | 40.0% | |
| TACAAGAAGAGGATGAGTAC+AGG | + | chr7_3:76055883-76055902 | Msa1124840:CDS | 40.0% | |
| ! | ATTGTGTTTTGTGCACTCTG+TGG | + | chr7_3:76055955-76055974 | Msa1124840:CDS | 40.0% |
| !! | TTCTGGAGGTGGATTCATTT+TGG | + | chr7_3:76056011-76056030 | Msa1124840:intron | 40.0% |
| !! | TCTGGAGGTGGATTCATTTT+GGG | + | chr7_3:76056012-76056031 | Msa1124840:intron | 40.0% |
| CACCAATCTCAATGAGAAGA+GGG | - | chr7_3:76056038-76056057 | None:intergenic | 40.0% | |
| ACACCAATCTCAATGAGAAG+AGG | - | chr7_3:76056039-76056058 | None:intergenic | 40.0% | |
| GTCTATATGTACTGTACCTG+AGG | - | chr7_3:76056066-76056085 | None:intergenic | 40.0% | |
| TCTAAATCCGCATGTGAAAG+GGG | - | chr7_3:76056092-76056111 | None:intergenic | 40.0% | |
| GACGTCCATTCTTGATTCAA+CGG | - | chr7_3:76056165-76056184 | None:intergenic | 40.0% | |
| GGCAATTGGTTAAGATCGAA+CGG | - | chr7_3:76056209-76056228 | None:intergenic | 40.0% | |
| CCAAGTCTAAGAAGGGATTT+CGG | - | chr7_3:76056280-76056299 | None:intergenic | 40.0% | |
| CGAAATCCCTTCTTAGACTT+GGG | + | chr7_3:76056278-76056297 | Msa1124840:intron | 40.0% | |
| TTGAATTCTACCTGCTCAAG+AGG | + | chr7_3:76056386-76056405 | Msa1124840:intron | 40.0% | |
| !! | GAAAGGTACCATAAGGAATG+GGG | - | chr7_3:76056414-76056433 | None:intergenic | 40.0% |
| CATTGTATTCATCCTCTCAG+GGG | + | chr7_3:76056758-76056777 | Msa1124840:CDS | 40.0% | |
| ! | CAGGTGTAATTGGCATTGAA+AGG | + | chr7_3:76056909-76056928 | Msa1124840:intron | 40.0% |
| TACCTAGTTGACCAACAAGA+AGG | + | chr7_3:76057099-76057118 | Msa1124840:three_prime_UTR | 40.0% | |
| ATCCTTCTTGTTGGTCAACT+AGG | - | chr7_3:76057104-76057123 | None:intergenic | 40.0% | |
| AGGAAATGGATCCTTCTTGT+TGG | - | chr7_3:76057113-76057132 | None:intergenic | 40.0% | |
| CACACAGATGCTACACTATT+AGG | - | chr7_3:76057229-76057248 | None:intergenic | 40.0% | |
| ! | TCATTGCTGGCTACATTTGA+AGG | + | chr7_3:76057391-76057410 | Msa1124840:three_prime_UTR | 40.0% |
| TACACCAATAGTAGGACCAA+TGG | - | chr7_3:76057568-76057587 | None:intergenic | 40.0% | |
| CAACAAAAGACACAGAGGGA+GGG | - | chr7_3:76054009-76054028 | None:intergenic | 45.0% | |
| ACAACAAAAGACACAGAGGG+AGG | - | chr7_3:76054010-76054029 | None:intergenic | 45.0% | |
| TTCATCCTCTACCTCGTATC+CGG | + | chr7_3:76054078-76054097 | Msa1124840:CDS | 45.0% | |
| GAGCCATGGAATTGAAGAGA+TGG | - | chr7_3:76054171-76054190 | None:intergenic | 45.0% | |
| !!! | GGGCCAAGTTTTATCGGTTT+TGG | - | chr7_3:76054193-76054212 | None:intergenic | 45.0% |
| GTTACTCACAACACGTTCTC+AGG | + | chr7_3:76054217-76054236 | Msa1124840:intron | 45.0% | |
| !!! | GGCTTTCTAGGATCTGCTTT+TGG | + | chr7_3:76054350-76054369 | Msa1124840:CDS | 45.0% |
| TTGTTGGATGACGCACTCTT+AGG | - | chr7_3:76054614-76054633 | None:intergenic | 45.0% | |
| TGACACGGAATATGATCCGT+TGG | + | chr7_3:76055228-76055247 | Msa1124840:CDS | 45.0% | |
| ! | TTGGGTCCTTTTCTCCTTAC+AGG | + | chr7_3:76055589-76055608 | Msa1124840:CDS | 45.0% |
| CCACAACACAACGACAATTG+AGG | - | chr7_3:76055701-76055720 | None:intergenic | 45.0% | |
| CCTCAATTGTCGTTGTGTTG+TGG | + | chr7_3:76055698-76055717 | Msa1124840:intron | 45.0% | |
| TGTGCACTCTGTGGAATCTT+AGG | + | chr7_3:76055964-76055983 | Msa1124840:CDS | 45.0% | |
| CACTCTGTGGAATCTTAGGT+GGG | + | chr7_3:76055968-76055987 | Msa1124840:CDS | 45.0% | |
| AGACATACCCCTTTCACATG+CGG | + | chr7_3:76056082-76056101 | Msa1124840:intron | 45.0% | |
| GGTGACCGTTGAATCAAGAA+TGG | + | chr7_3:76056157-76056176 | Msa1124840:intron | 45.0% | |
| TCAAGAATGGACGTCAAGCT+TGG | + | chr7_3:76056170-76056189 | Msa1124840:intron | 45.0% | |
| AAGGGATTTCGGTTGTGTGT+AGG | - | chr7_3:76056269-76056288 | None:intergenic | 45.0% | |
| CCGAAATCCCTTCTTAGACT+TGG | + | chr7_3:76056277-76056296 | Msa1124840:intron | 45.0% | |
| AAGAGGTTCCCCATTCCTTA+TGG | + | chr7_3:76056403-76056422 | Msa1124840:intron | 45.0% | |
| CCAAAACAGACACTGTGAAG+AGG | - | chr7_3:76056677-76056696 | None:intergenic | 45.0% | |
| ! | CCTCTTCACAGTGTCTGTTT+TGG | + | chr7_3:76056674-76056693 | Msa1124840:CDS | 45.0% |
| !!! | TTCACAGTGTCTGTTTTGGC+TGG | + | chr7_3:76056678-76056697 | Msa1124840:CDS | 45.0% |
| !!! | TCTGTTTTGGCTGGCTTTGT+GGG | + | chr7_3:76056687-76056706 | Msa1124840:CDS | 45.0% |
| TAGCAAAAATGACCCCTGAG+AGG | - | chr7_3:76056773-76056792 | None:intergenic | 45.0% | |
| ! | TTTTGCTAGTGCTCTCACCA+TGG | + | chr7_3:76056785-76056804 | Msa1124840:CDS | 45.0% |
| TTTGCTAGTGCTCTCACCAT+GGG | + | chr7_3:76056786-76056805 | Msa1124840:CDS | 45.0% | |
| !! | TGTGCTGCTTCAATGACTCT+AGG | - | chr7_3:76057168-76057187 | None:intergenic | 45.0% |
| CTATGTGGCCAATTCATTGC+TGG | + | chr7_3:76057378-76057397 | Msa1124840:three_prime_UTR | 45.0% | |
| GTCCTACTATTGGTGTACTG+TGG | + | chr7_3:76057571-76057590 | Msa1124840:three_prime_UTR | 45.0% | |
| GTCCACAGTACACCAATAGT+AGG | - | chr7_3:76057576-76057595 | None:intergenic | 45.0% | |
| GGGAGGGAGTAACGTTGTTA+TGG | - | chr7_3:76053993-76054012 | None:intergenic | 50.0% | |
| AGAAACCGGATACGAGGTAG+AGG | - | chr7_3:76054086-76054105 | None:intergenic | 50.0% | |
| GAGAATCGCAACGGAGAAAC+CGG | - | chr7_3:76054100-76054119 | None:intergenic | 50.0% | |
| AAGAGCGGAGAGAATCGCAA+CGG | - | chr7_3:76054109-76054128 | None:intergenic | 50.0% | |
| TGCAGGAATTGGAGCCTAGT+TGG | + | chr7_3:76054303-76054322 | Msa1124840:intron | 50.0% | |
| ! | GCCTAGTTGGAGACTTGCTT+TGG | + | chr7_3:76054316-76054335 | Msa1124840:CDS | 50.0% |
| GCCAAAGCAAGTCTCCAACT+AGG | - | chr7_3:76054320-76054339 | None:intergenic | 50.0% | |
| !!! | GGATCTGCTTTTGGAACCGT+TGG | + | chr7_3:76054359-76054378 | Msa1124840:CDS | 50.0% |
| !!! | TCTGCTTTTGGAACCGTTGG+TGG | + | chr7_3:76054362-76054381 | Msa1124840:CDS | 50.0% |
| !! | TTTGGAACCGTTGGTGGTGT+TGG | + | chr7_3:76054368-76054387 | Msa1124840:CDS | 50.0% |
| GGACAGTGATGAGCCAGTAA+GGG | - | chr7_3:76054731-76054750 | None:intergenic | 50.0% | |
| AGGACAGTGATGAGCCAGTA+AGG | - | chr7_3:76054732-76054751 | None:intergenic | 50.0% | |
| GAGGATGAGTACAGGAAACC+TGG | + | chr7_3:76055891-76055910 | Msa1124840:CDS | 50.0% | |
| GCACTCTGTGGAATCTTAGG+TGG | + | chr7_3:76055967-76055986 | Msa1124840:CDS | 50.0% | |
| AGAACCAAGTAGCCCTCCAA+CGG | - | chr7_3:76055995-76056014 | None:intergenic | 50.0% | |
| GGCCCTCTTCTCATTGAGAT+TGG | + | chr7_3:76056033-76056052 | Msa1124840:intron | 50.0% | |
| !! | TGAGATTGGTGTCATCCCTC+AGG | + | chr7_3:76056047-76056066 | Msa1124840:intron | 50.0% |
| AGCTAGGTGCGTGACTGTAT+GGG | - | chr7_3:76056132-76056151 | None:intergenic | 50.0% | |
| TAGCTAGGTGCGTGACTGTA+TGG | - | chr7_3:76056133-76056152 | None:intergenic | 50.0% | |
| AGTCACGCACCTAGCTACAT+CGG | + | chr7_3:76056136-76056155 | Msa1124840:intron | 50.0% | |
| TCAGCTACATCGGTGGCAAT+TGG | - | chr7_3:76056223-76056242 | None:intergenic | 50.0% | |
| AGTCACGCAGTCAGCTACAT+CGG | - | chr7_3:76056233-76056252 | None:intergenic | 50.0% | |
| !!! | GTCTGTTTTGGCTGGCTTTG+TGG | + | chr7_3:76056686-76056705 | Msa1124840:CDS | 50.0% |
| !! | AAGGCAGCGTTGATGAATGC+TGG | + | chr7_3:76057072-76057091 | Msa1124840:three_prime_UTR | 50.0% |
| CAACGGAGAAACCGGATACG+AGG | - | chr7_3:76054092-76054111 | None:intergenic | 55.0% | |
| ACCACCACCAACACCACCAA+CGG | - | chr7_3:76054378-76054397 | None:intergenic | 55.0% | |
| GGAAAGAGCAGCAGCAGACT+TGG | - | chr7_3:76054444-76054463 | None:intergenic | 55.0% | |
| GGAATCTTAGGTGGGACCGT+TGG | + | chr7_3:76055976-76055995 | Msa1124840:CDS | 55.0% | |
| ATCTTAGGTGGGACCGTTGG+AGG | + | chr7_3:76055979-76055998 | Msa1124840:CDS | 55.0% | |
| TCTTAGGTGGGACCGTTGGA+GGG | + | chr7_3:76055980-76055999 | Msa1124840:CDS | 55.0% | |
| GTTGGAGGGCTACTTGGTTC+TGG | + | chr7_3:76055994-76056013 | Msa1124840:CDS | 55.0% | |
| CAACGGTCACCGATGTAGCT+AGG | - | chr7_3:76056148-76056167 | None:intergenic | 55.0% | |
| GAATGGGGAACCTCTTGAGC+AGG | - | chr7_3:76056399-76056418 | None:intergenic | 55.0% | |
| !! | GGAACCGTTGGTGGTGTTGG+TGG | + | chr7_3:76054371-76054390 | Msa1124840:CDS | 60.0% |
| !! | ACCGTTGGTGGTGTTGGTGG+TGG | + | chr7_3:76054374-76054393 | Msa1124840:CDS | 60.0% |
| !! | GTTGGTGGTGTTGGTGGTGG+TGG | + | chr7_3:76054377-76054396 | Msa1124840:CDS | 60.0% |
| !! | GGAGGGCTACTTGGTTCTGG+AGG | + | chr7_3:76055997-76056016 | Msa1124840:CDS | 60.0% |
| !! | GGGCTACTTGGTTCTGGAGG+TGG | + | chr7_3:76056000-76056019 | Msa1124840:intron | 60.0% |
| CACGCAGTCAGCTACATCGG+TGG | - | chr7_3:76056230-76056249 | None:intergenic | 60.0% | |
| GGGACCGTTGGAGGGCTACT+TGG | + | chr7_3:76055988-76056007 | Msa1124840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 76053971 | 76057620 | 76053971 | ID=Msa1124840;Name=Msa1124840 |
| chr7_3 | mRNA | 76053971 | 76057620 | 76053971 | ID=Msa1124840-mRNA-1;Parent=Msa1124840;Name=Msa1124840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=86|0.90|0.91|1|0.90|0.83|12|589|411 |
| chr7_3 | exon | 76053971 | 76054212 | 76053971 | ID=Msa1124840-mRNA-1:exon:20620;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76054308 | 76054467 | 76054308 | ID=Msa1124840-mRNA-1:exon:20621;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76054571 | 76054771 | 76054571 | ID=Msa1124840-mRNA-1:exon:20622;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76054874 | 76054935 | 76054874 | ID=Msa1124840-mRNA-1:exon:20623;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76055030 | 76055078 | 76055030 | ID=Msa1124840-mRNA-1:exon:20624;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76055221 | 76055276 | 76055221 | ID=Msa1124840-mRNA-1:exon:20625;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76055378 | 76055464 | 76055378 | ID=Msa1124840-mRNA-1:exon:20626;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76055560 | 76055610 | 76055560 | ID=Msa1124840-mRNA-1:exon:20627;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76055829 | 76056018 | 76055829 | ID=Msa1124840-mRNA-1:exon:20628;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76056667 | 76056807 | 76056667 | ID=Msa1124840-mRNA-1:exon:20629;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76056912 | 76057490 | 76056912 | ID=Msa1124840-mRNA-1:exon:20630;Parent=Msa1124840-mRNA-1 |
| chr7_3 | exon | 76057528 | 76057620 | 76057528 | ID=Msa1124840-mRNA-1:exon:20631;Parent=Msa1124840-mRNA-1 |
| chr7_3 | five_prime_UTR | 76053971 | 76054056 | 76053971 | ID=Msa1124840-mRNA-1:five_prime_utr;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76054057 | 76054212 | 76054057 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76054308 | 76054467 | 76054308 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76054571 | 76054771 | 76054571 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76054874 | 76054935 | 76054874 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76055030 | 76055078 | 76055030 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76055221 | 76055276 | 76055221 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76055378 | 76055464 | 76055378 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76055560 | 76055610 | 76055560 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76055829 | 76056018 | 76055829 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76056667 | 76056807 | 76056667 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | CDS | 76056912 | 76056994 | 76056912 | ID=Msa1124840-mRNA-1:cds;Parent=Msa1124840-mRNA-1 |
| chr7_3 | three_prime_UTR | 76056995 | 76057490 | 76056995 | ID=Msa1124840-mRNA-1:three_prime_utr;Parent=Msa1124840-mRNA-1 |
| chr7_3 | three_prime_UTR | 76057528 | 76057620 | 76057528 | ID=Msa1124840-mRNA-1:three_prime_utr;Parent=Msa1124840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
