Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833300 | XP_024639900.1 | 90.722 | 97 | 8 | 1 | 2 | 98 | 41 | 136 | 1.17e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833300 | sp|Q8VYJ2|AHL1_ARATH | 51.042 | 96 | 43 | 2 | 3 | 94 | 222 | 317 | 1.16e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833300 | A0A396HQR7 | 90.722 | 97 | 8 | 1 | 2 | 98 | 152 | 247 | 1.98e-53 | 176 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015400 | Msa0833300 | 0.801919 | 7.173179e-49 | -8.615850e-47 |
| Msa0095970 | Msa0833300 | 0.873471 | 1.432787e-67 | -8.615850e-47 |
| Msa0102070 | Msa0833300 | 0.823869 | 1.097697e-53 | -8.615850e-47 |
| Msa0647170 | Msa0833300 | 0.803869 | 2.837315e-49 | -8.615850e-47 |
| Msa0726140 | Msa0833300 | 0.834304 | 3.238789e-56 | -8.615850e-47 |
| Msa0729800 | Msa0833300 | 0.817567 | 3.083719e-52 | -8.615850e-47 |
| Msa0743810 | Msa0833300 | 0.830879 | 2.289634e-55 | -8.615850e-47 |
| Msa0745060 | Msa0833300 | 0.824289 | 8.750610e-54 | -8.615850e-47 |
| Msa0783160 | Msa0833300 | 0.813358 | 2.665017e-51 | -8.615850e-47 |
| Msa0787600 | Msa0833300 | 0.817410 | 3.345468e-52 | -8.615850e-47 |
| Msa0808010 | Msa0833300 | 0.827366 | 1.627980e-54 | -8.615850e-47 |
| Msa0808020 | Msa0833300 | 0.821173 | 4.646732e-53 | -8.615850e-47 |
| Msa0825860 | Msa0833300 | 0.831766 | 1.386170e-55 | -8.615850e-47 |
| Msa0833290 | Msa0833300 | 0.858627 | 7.234672e-63 | -8.615850e-47 |
| Msa0833300 | Msa0846210 | 0.805063 | 1.599329e-49 | -8.615850e-47 |
| Msa0833300 | Msa0846330 | 0.816102 | 6.574718e-52 | -8.615850e-47 |
| Msa0833300 | Msa0846350 | 0.812111 | 4.995816e-51 | -8.615850e-47 |
| Msa0833300 | Msa0857680 | 0.812067 | 5.107646e-51 | -8.615850e-47 |
| Msa0833300 | Msa0858980 | 0.822227 | 2.652110e-53 | -8.615850e-47 |
| Msa0833300 | Msa0865320 | 0.809885 | 1.516319e-50 | -8.615850e-47 |
| Msa0833300 | Msa0885280 | 0.807699 | 4.448927e-50 | -8.615850e-47 |
| Msa0833300 | Msa0885290 | 0.819356 | 1.212299e-52 | -8.615850e-47 |
| Msa0833300 | Msa0888420 | 0.837527 | 4.933062e-57 | -8.615850e-47 |
| Msa0833300 | Msa0914760 | 0.840008 | 1.126375e-57 | -8.615850e-47 |
| Msa0833300 | Msa0952720 | 0.819394 | 1.188327e-52 | -8.615850e-47 |
| Msa0833300 | Msa0954910 | 0.801606 | 8.319418e-49 | -8.615850e-47 |
| Msa0833300 | Msa0956270 | 0.808667 | 2.767352e-50 | -8.615850e-47 |
| Msa0833300 | Msa0979850 | 0.803630 | 3.180338e-49 | -8.615850e-47 |
| Msa0833300 | Msa0981370 | 0.843305 | 1.520071e-58 | -8.615850e-47 |
| Msa0833300 | Msa0989060 | 0.800719 | 1.263143e-48 | -8.615850e-47 |
| Msa0833300 | Msa1016280 | 0.840732 | 7.283541e-58 | -8.615850e-47 |
| Msa0833300 | Msa1025360 | 0.844696 | 6.443459e-59 | -8.615850e-47 |
| Msa0833300 | Msa1025370 | 0.844249 | 8.499133e-59 | -8.615850e-47 |
| Msa0833300 | Msa1044830 | 0.843574 | 1.288732e-58 | -8.615850e-47 |
| Msa0833300 | Msa1044840 | 0.847701 | 9.788326e-60 | -8.615850e-47 |
| Msa0833300 | Msa1060840 | 0.809869 | 1.528411e-50 | -8.615850e-47 |
| Msa0833300 | Msa1096580 | 0.803279 | 3.760336e-49 | -8.615850e-47 |
| Msa0833300 | Msa1100980 | 0.846577 | 1.989866e-59 | -8.615850e-47 |
| Msa0833300 | Msa1109440 | 0.846214 | 2.499761e-59 | -8.615850e-47 |
| Msa0833300 | Msa1112300 | 0.823951 | 1.050424e-53 | -8.615850e-47 |
| Msa0833300 | Msa1121200 | 0.859865 | 3.077688e-63 | -8.615850e-47 |
| Msa0833300 | Msa1135740 | 0.833844 | 4.222529e-56 | -8.615850e-47 |
| Msa0833300 | Msa1136090 | 0.825355 | 4.904094e-54 | -8.615850e-47 |
| Msa0833300 | Msa1146110 | 0.819593 | 1.070622e-52 | -8.615850e-47 |
| Msa0833300 | Msa1149360 | 0.818916 | 1.526951e-52 | -8.615850e-47 |
| Msa0833300 | Msa1164120 | 0.813620 | 2.334313e-51 | -8.615850e-47 |
| Msa0833300 | Msa1173920 | 0.802136 | 6.474732e-49 | -8.615850e-47 |
| Msa0833300 | Msa1177100 | 0.801373 | 9.283152e-49 | -8.615850e-47 |
| Msa0833300 | Msa1187940 | 0.823431 | 1.390072e-53 | -8.615850e-47 |
| Msa0833300 | Msa1187950 | 0.825784 | 3.881457e-54 | -8.615850e-47 |
| Msa0833300 | Msa1192640 | 0.849138 | 3.918207e-60 | -8.615850e-47 |
| Msa0833300 | Msa1246880 | 0.800912 | 1.153688e-48 | -8.615850e-47 |
| Msa0833300 | Msa1269670 | 0.817263 | 3.610552e-52 | -8.615850e-47 |
| Msa0833300 | Msa1270230 | 0.835473 | 1.643973e-56 | -8.615850e-47 |
| Msa0833300 | Msa1270240 | 0.839153 | 1.878210e-57 | -8.615850e-47 |
| Msa0833300 | Msa1270270 | 0.816184 | 6.301578e-52 | -8.615850e-47 |
| Msa0833300 | Msa1283330 | 0.836587 | 8.574172e-57 | -8.615850e-47 |
| Msa0833300 | Msa1284680 | 0.800219 | 1.596816e-48 | -8.615850e-47 |
| Msa0833300 | Msa1285930 | 0.857344 | 1.739890e-62 | -8.615850e-47 |
| Msa0833300 | Msa1287800 | 0.834418 | 3.032771e-56 | -8.615850e-47 |
| Msa0833300 | Msa1287810 | 0.843414 | 1.422287e-58 | -8.615850e-47 |
| Msa0833300 | Msa1289430 | 0.807457 | 5.007827e-50 | -8.615850e-47 |
| Msa0833300 | Msa1305480 | 0.817537 | 3.132505e-52 | -8.615850e-47 |
| Msa0833300 | Msa1307890 | 0.819849 | 9.357764e-53 | -8.615850e-47 |
| Msa0833300 | Msa1320300 | 0.810305 | 1.231257e-50 | -8.615850e-47 |
| Msa0833300 | Msa1340590 | 0.806777 | 6.977616e-50 | -8.615850e-47 |
| Msa0833300 | Msa1342200 | 0.812238 | 4.688782e-51 | -8.615850e-47 |
| Msa0833300 | Msa1386330 | 0.820017 | 8.563969e-53 | -8.615850e-47 |
| Msa0833300 | Msa1404000 | 0.837057 | 6.505082e-57 | -8.615850e-47 |
| Msa0833300 | Msa1404020 | 0.860300 | 2.273562e-63 | -8.615850e-47 |
| Msa0833300 | Msa1415310 | 0.815988 | 6.971631e-52 | -8.615850e-47 |
| Msa0833300 | Msa1422180 | 0.811524 | 6.706639e-51 | -8.615850e-47 |
| Msa0833300 | Msa1433120 | 0.833206 | 6.091211e-56 | -8.615850e-47 |
| Msa0142220 | Msa0833300 | 0.807617 | 4.631318e-50 | -8.615850e-47 |
| Msa0145750 | Msa0833300 | 0.811184 | 7.950177e-51 | -8.615850e-47 |
| Msa0188460 | Msa0833300 | 0.802427 | 5.638208e-49 | -8.615850e-47 |
| Msa0208090 | Msa0833300 | 0.801971 | 6.998633e-49 | -8.615850e-47 |
| Msa0227480 | Msa0833300 | 0.801808 | 7.561293e-49 | -8.615850e-47 |
| Msa0231000 | Msa0833300 | 0.814893 | 1.221660e-51 | -8.615850e-47 |
| Msa0365500 | Msa0833300 | 0.816750 | 4.707900e-52 | -8.615850e-47 |
| Msa0384800 | Msa0833300 | 0.813004 | 3.187934e-51 | -8.615850e-47 |
| Msa0384890 | Msa0833300 | 0.805930 | 1.052473e-49 | -8.615850e-47 |
| Msa0406120 | Msa0833300 | 0.852498 | 4.438745e-61 | -8.615850e-47 |
| Msa0414410 | Msa0833300 | 0.827531 | 1.486084e-54 | -8.615850e-47 |
| Msa0414420 | Msa0833300 | 0.834837 | 2.379690e-56 | -8.615850e-47 |
| Msa0435230 | Msa0833300 | 0.803304 | 3.715802e-49 | -8.615850e-47 |
| Msa0436780 | Msa0833300 | 0.828407 | 9.147980e-55 | -8.615850e-47 |
| Msa0450000 | Msa0833300 | 0.811559 | 6.590580e-51 | -8.615850e-47 |
| Msa0451730 | Msa0833300 | 0.807466 | 4.984963e-50 | -8.615850e-47 |
| Msa0452900 | Msa0833300 | 0.849035 | 4.186140e-60 | -8.615850e-47 |
| Msa0453120 | Msa0833300 | 0.830113 | 3.524992e-55 | -8.615850e-47 |
| Msa0459170 | Msa0833300 | 0.802618 | 5.150649e-49 | -8.615850e-47 |
| Msa0479340 | Msa0833300 | 0.805316 | 1.416083e-49 | -8.615850e-47 |
| Msa0267000 | Msa0833300 | 0.834015 | 3.826595e-56 | -8.615850e-47 |
| Msa0267010 | Msa0833300 | 0.840544 | 8.158992e-58 | -8.615850e-47 |
| Msa0270520 | Msa0833300 | 0.800112 | 1.679046e-48 | -8.615850e-47 |
| Msa0342240 | Msa0833300 | 0.837129 | 6.234435e-57 | -8.615850e-47 |
| Msa0360510 | Msa0833300 | 0.827185 | 1.799305e-54 | -8.615850e-47 |
| Msa0491590 | Msa0833300 | 0.807139 | 5.849006e-50 | -8.615850e-47 |
| Msa0534540 | Msa0833300 | 0.810217 | 1.286327e-50 | -8.615850e-47 |
| Msa0541130 | Msa0833300 | 0.801560 | 8.499107e-49 | -8.615850e-47 |
| Msa0564890 | Msa0833300 | 0.829780 | 4.250793e-55 | -8.615850e-47 |
| Msa0598780 | Msa0833300 | 0.805158 | 1.527786e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833300 | MtrunA17_Chr5g0398621 | 90.722 | 97 | 8 | 1 | 2 | 98 | 152 | 247 | 3.81e-57 | 176 |
| Msa0833300 | MtrunA17_Chr5g0398591 | 65.000 | 100 | 23 | 3 | 1 | 96 | 9 | 100 | 2.20e-33 | 112 |
| Msa0833300 | MtrunA17_Chr5g0398601 | 68.000 | 75 | 18 | 2 | 25 | 95 | 4 | 76 | 8.75e-22 | 88.2 |
| Msa0833300 | MtrunA17_Chr7g0245841 | 54.455 | 101 | 38 | 1 | 3 | 95 | 179 | 279 | 2.73e-17 | 74.7 |
| Msa0833300 | MtrunA17_Chr1g0179461 | 39.326 | 89 | 52 | 1 | 3 | 89 | 198 | 286 | 8.30e-16 | 70.9 |
| Msa0833300 | MtrunA17_Chr8g0351761 | 59.211 | 76 | 30 | 1 | 3 | 77 | 194 | 269 | 1.65e-15 | 70.1 |
| Msa0833300 | MtrunA17_Chr7g0247431 | 40.000 | 80 | 48 | 0 | 3 | 82 | 209 | 288 | 4.72e-15 | 68.6 |
| Msa0833300 | MtrunA17_Chr1g0188211 | 54.118 | 85 | 38 | 1 | 3 | 86 | 185 | 269 | 3.03e-14 | 66.2 |
| Msa0833300 | MtrunA17_Chr6g0476061 | 42.222 | 90 | 48 | 1 | 5 | 94 | 184 | 269 | 1.57e-13 | 64.3 |
| Msa0833300 | MtrunA17_Chr1g0190011 | 46.479 | 71 | 34 | 2 | 2 | 71 | 161 | 228 | 7.84e-13 | 62.4 |
| Msa0833300 | MtrunA17_Chr5g0397551 | 47.761 | 67 | 34 | 1 | 1 | 67 | 184 | 249 | 3.04e-12 | 60.8 |
| Msa0833300 | MtrunA17_Chr4g0056761 | 53.933 | 89 | 40 | 1 | 3 | 90 | 196 | 284 | 5.19e-12 | 60.1 |
| Msa0833300 | MtrunA17_Chr6g0465361 | 37.209 | 86 | 51 | 2 | 6 | 89 | 18 | 102 | 1.28e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833300 | AT4G12080.1 | 51.042 | 96 | 43 | 2 | 3 | 94 | 222 | 317 | 1.18e-21 | 87.4 |
| Msa0833300 | AT2G33620.1 | 43.689 | 103 | 45 | 1 | 3 | 92 | 215 | 317 | 2.66e-18 | 78.2 |
| Msa0833300 | AT2G33620.4 | 43.689 | 103 | 45 | 1 | 3 | 92 | 215 | 317 | 2.66e-18 | 78.2 |
| Msa0833300 | AT2G33620.2 | 43.689 | 103 | 45 | 1 | 3 | 92 | 215 | 317 | 2.66e-18 | 78.2 |
| Msa0833300 | AT2G33620.3 | 43.689 | 103 | 45 | 1 | 3 | 92 | 215 | 317 | 2.66e-18 | 78.2 |
| Msa0833300 | AT5G62260.1 | 48.052 | 77 | 40 | 0 | 3 | 79 | 212 | 288 | 2.51e-17 | 75.5 |
| Msa0833300 | AT5G62260.3 | 48.052 | 77 | 40 | 0 | 3 | 79 | 212 | 288 | 2.51e-17 | 75.5 |
| Msa0833300 | AT4G22770.2 | 52.174 | 92 | 43 | 1 | 3 | 93 | 202 | 293 | 6.51e-15 | 68.6 |
| Msa0833300 | AT4G22770.1 | 52.174 | 92 | 43 | 1 | 3 | 93 | 202 | 293 | 6.51e-15 | 68.6 |
| Msa0833300 | AT5G51590.1 | 50.769 | 65 | 32 | 0 | 3 | 67 | 230 | 294 | 1.99e-14 | 67.4 |
| Msa0833300 | AT4G17950.1 | 42.708 | 96 | 52 | 2 | 3 | 95 | 275 | 370 | 2.71e-14 | 67.0 |
| Msa0833300 | AT4G25320.1 | 44.444 | 72 | 40 | 0 | 3 | 74 | 218 | 289 | 4.08e-14 | 66.6 |
| Msa0833300 | AT4G00200.2 | 50.562 | 89 | 43 | 1 | 3 | 91 | 175 | 262 | 2.69e-13 | 63.9 |
| Msa0833300 | AT4G00200.1 | 50.562 | 89 | 43 | 1 | 3 | 91 | 175 | 262 | 2.69e-13 | 63.9 |
| Msa0833300 | AT5G62260.2 | 44.615 | 65 | 36 | 0 | 3 | 67 | 212 | 276 | 9.78e-13 | 62.4 |
| Msa0833300 | AT2G45850.1 | 41.250 | 80 | 44 | 1 | 3 | 82 | 214 | 290 | 1.23e-12 | 62.4 |
| Msa0833300 | AT2G45850.2 | 41.250 | 80 | 44 | 1 | 3 | 82 | 214 | 290 | 1.23e-12 | 62.4 |
Find 25 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATAGGCTGTTATGTATT+TGG | 0.193670 | 5_4:-6483654 | None:intergenic |
| TATGAAATTCGAACTTTATC+TGG | 0.233802 | 5_4:+6483149 | Msa0833300:CDS |
| AATAATGCAAATTGAATTTC+AGG | 0.249584 | 5_4:+6483121 | None:intergenic |
| GACCAGGTACTTACATTTAC+AGG | 0.268526 | 5_4:-6483296 | None:intergenic |
| CGCGGAAGGCGGAGTATATC+TGG | 0.344559 | 5_4:+6483194 | Msa0833300:CDS |
| TGGCATGAGTGTTTCTTTAG+TGG | 0.383981 | 5_4:+6483217 | Msa0833300:CDS |
| TTCTGCTCATGTTGTTCACT+TGG | 0.400794 | 5_4:-6483570 | None:intergenic |
| GCAGTAGACATGGGAGCAGC+TGG | 0.426144 | 5_4:-6483627 | None:intergenic |
| GTTGTTGGCGGTCGTGTAGC+TGG | 0.449009 | 5_4:+6483254 | Msa0833300:CDS |
| GCTGCTCCCATGTCTACTGC+TGG | 0.473409 | 5_4:+6483630 | Msa0833300:CDS |
| ATCTGGTTTGTTCATGCCAG+AGG | 0.521232 | 5_4:+6483166 | Msa0833300:CDS |
| GTTTCTTTAGTGGATCTACA+TGG | 0.535434 | 5_4:+6483227 | Msa0833300:CDS |
| TGCCAGAGGAAAAGCGCGGA+AGG | 0.539759 | 5_4:+6483180 | Msa0833300:CDS |
| ACAGGACTTGCAGCCACCAA+TGG | 0.541015 | 5_4:-6483278 | None:intergenic |
| ATAATGCAAATTGAATTTCA+GGG | 0.542355 | 5_4:+6483122 | None:intergenic |
| CGGTCGTGTAGCTGGTCCAT+TGG | 0.545745 | 5_4:+6483262 | Msa0833300:CDS |
| TCGTGTAGCTGGTCCATTGG+TGG | 0.554685 | 5_4:+6483265 | Msa0833300:CDS |
| GATCTACATGGACATGTTGT+TGG | 0.565136 | 5_4:+6483239 | Msa0833300:CDS |
| ATTTGGACCAGCAGTAGACA+TGG | 0.578513 | 5_4:-6483637 | None:intergenic |
| CTACATGGACATGTTGTTGG+CGG | 0.596833 | 5_4:+6483242 | Msa0833300:CDS |
| GATATGTATCAGGTAGTGGT+AGG | 0.603294 | 5_4:+6483537 | Msa0833300:intron |
| CAGAGGAAAAGCGCGGAAGG+CGG | 0.629538 | 5_4:+6483183 | Msa0833300:CDS |
| TTTGGACCAGCAGTAGACAT+GGG | 0.688042 | 5_4:-6483636 | None:intergenic |
| GGAAGGCGGAGTATATCTGG+TGG | 0.708998 | 5_4:+6483197 | Msa0833300:CDS |
| TTCATGCCAGAGGAAAAGCG+CGG | 0.748400 | 5_4:+6483176 | Msa0833300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TATGAAATTCGAACTTTATC+TGG | + | chr5_4:6483149-6483168 | Msa0833300:CDS | 25.0% |
| ! | GCTTATGTAGTTATTTATCT+TGG | + | chr5_4:6483365-6483384 | Msa0833300:intron | 25.0% |
| ! | ATGCAATTCTGATAATTTAG+TGG | + | chr5_4:6483459-6483478 | Msa0833300:intron | 25.0% |
| GCTAAAAACACAGAATAATG+AGG | + | chr5_4:6483593-6483612 | Msa0833300:CDS | 30.0% | |
| ! | GTTTCTTTAGTGGATCTACA+TGG | + | chr5_4:6483227-6483246 | Msa0833300:CDS | 35.0% |
| TCTGTTTCCTGCTAAAGAAA+TGG | + | chr5_4:6483418-6483437 | Msa0833300:intron | 35.0% | |
| ! | ATAGTTGCCATTTCTTTAGC+AGG | - | chr5_4:6483428-6483447 | None:intergenic | 35.0% |
| ATTCTCATCACTGTTTCCAA+TGG | + | chr5_4:6483511-6483530 | Msa0833300:intron | 35.0% | |
| CCTGATACATATCAATCCAT+TGG | - | chr5_4:6483530-6483549 | None:intergenic | 35.0% | |
| !! | CCAATGGATTGATATGTATC+AGG | + | chr5_4:6483527-6483546 | Msa0833300:intron | 35.0% |
| GATTGATATGTATCAGGTAG+TGG | + | chr5_4:6483533-6483552 | Msa0833300:intron | 35.0% | |
| TGGCATGAGTGTTTCTTTAG+TGG | + | chr5_4:6483217-6483236 | Msa0833300:CDS | 40.0% | |
| GATCTACATGGACATGTTGT+TGG | + | chr5_4:6483239-6483258 | Msa0833300:CDS | 40.0% | |
| GTCCTGTAAATGTAAGTACC+TGG | + | chr5_4:6483294-6483313 | Msa0833300:intron | 40.0% | |
| GACCAGGTACTTACATTTAC+AGG | - | chr5_4:6483299-6483318 | None:intergenic | 40.0% | |
| TAAATGTAAGTACCTGGTCC+TGG | + | chr5_4:6483300-6483319 | Msa0833300:intron | 40.0% | |
| AAAAGACATATTCCCTAGCC+AGG | - | chr5_4:6483321-6483340 | None:intergenic | 40.0% | |
| TTCGCAAACTAAAGTCTAGC+AGG | + | chr5_4:6483340-6483359 | Msa0833300:intron | 40.0% | |
| TCGCAAACTAAAGTCTAGCA+GGG | + | chr5_4:6483341-6483360 | Msa0833300:intron | 40.0% | |
| ! | GATATGTATCAGGTAGTGGT+AGG | + | chr5_4:6483537-6483556 | Msa0833300:intron | 40.0% |
| TTCTGCTCATGTTGTTCACT+TGG | - | chr5_4:6483573-6483592 | None:intergenic | 40.0% | |
| !! | ATCTGGTTTGTTCATGCCAG+AGG | + | chr5_4:6483166-6483185 | Msa0833300:CDS | 45.0% |
| CTACATGGACATGTTGTTGG+CGG | + | chr5_4:6483242-6483261 | Msa0833300:CDS | 45.0% | |
| TTTGGACCAGCAGTAGACAT+GGG | - | chr5_4:6483639-6483658 | None:intergenic | 45.0% | |
| ATTTGGACCAGCAGTAGACA+TGG | - | chr5_4:6483640-6483659 | None:intergenic | 45.0% | |
| TTCATGCCAGAGGAAAAGCG+CGG | + | chr5_4:6483176-6483195 | Msa0833300:CDS | 50.0% | |
| TAAGTACCTGGTCCTGGCTA+GGG | + | chr5_4:6483306-6483325 | Msa0833300:intron | 50.0% | |
| GGAAGGCGGAGTATATCTGG+TGG | + | chr5_4:6483197-6483216 | Msa0833300:CDS | 55.0% | |
| TCGTGTAGCTGGTCCATTGG+TGG | + | chr5_4:6483265-6483284 | Msa0833300:CDS | 55.0% | |
| ACAGGACTTGCAGCCACCAA+TGG | - | chr5_4:6483281-6483300 | None:intergenic | 55.0% | |
| GTAAGTACCTGGTCCTGGCT+AGG | + | chr5_4:6483305-6483324 | Msa0833300:intron | 55.0% | |
| CATATTCCCTAGCCAGGACC+AGG | - | chr5_4:6483315-6483334 | None:intergenic | 55.0% | |
| ! | TGCCAGAGGAAAAGCGCGGA+AGG | + | chr5_4:6483180-6483199 | Msa0833300:CDS | 60.0% |
| ! | CAGAGGAAAAGCGCGGAAGG+CGG | + | chr5_4:6483183-6483202 | Msa0833300:CDS | 60.0% |
| CGCGGAAGGCGGAGTATATC+TGG | + | chr5_4:6483194-6483213 | Msa0833300:CDS | 60.0% | |
| GTTGTTGGCGGTCGTGTAGC+TGG | + | chr5_4:6483254-6483273 | Msa0833300:CDS | 60.0% | |
| CGGTCGTGTAGCTGGTCCAT+TGG | + | chr5_4:6483262-6483281 | Msa0833300:CDS | 60.0% | |
| GCAGTAGACATGGGAGCAGC+TGG | - | chr5_4:6483630-6483649 | None:intergenic | 60.0% | |
| GCTGCTCCCATGTCTACTGC+TGG | + | chr5_4:6483630-6483649 | Msa0833300:CDS | 60.0% | |
| ! | CGCCTTCCGCGCTTTTCCTC+TGG | - | chr5_4:6483185-6483204 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6483125 | 6483665 | 6483125 | ID=Msa0833300;Name=Msa0833300 |
| chr5_4 | mRNA | 6483125 | 6483665 | 6483125 | ID=Msa0833300-mRNA-1;Parent=Msa0833300;Name=Msa0833300-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|98 |
| chr5_4 | exon | 6483125 | 6483304 | 6483125 | ID=Msa0833300-mRNA-1:exon:2815;Parent=Msa0833300-mRNA-1 |
| chr5_4 | exon | 6483549 | 6483665 | 6483549 | ID=Msa0833300-mRNA-1:exon:2816;Parent=Msa0833300-mRNA-1 |
| chr5_4 | CDS | 6483125 | 6483304 | 6483125 | ID=Msa0833300-mRNA-1:cds;Parent=Msa0833300-mRNA-1 |
| chr5_4 | CDS | 6483549 | 6483665 | 6483549 | ID=Msa0833300-mRNA-1:cds;Parent=Msa0833300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
