Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246880 | XP_039690699.1 | 60.526 | 114 | 29 | 1 | 6 | 103 | 399 | 512 | 8.21e-31 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246880 | G7KD35 | 60.526 | 114 | 29 | 1 | 6 | 103 | 398 | 511 | 4.40e-31 | 126 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa1246880 | 0.816755 | 4.694760e-52 | -8.615850e-47 |
| Msa0016570 | Msa1246880 | 0.821849 | 3.244483e-53 | -8.615850e-47 |
| Msa0016580 | Msa1246880 | 0.805725 | 1.161892e-49 | -8.615850e-47 |
| Msa0102070 | Msa1246880 | 0.841292 | 5.190466e-58 | -8.615850e-47 |
| Msa0110270 | Msa1246880 | 0.801054 | 1.079170e-48 | -8.615850e-47 |
| Msa0111510 | Msa1246880 | 0.804882 | 1.744964e-49 | -8.615850e-47 |
| Msa0604350 | Msa1246880 | 0.838896 | 2.189811e-57 | -8.615850e-47 |
| Msa0636170 | Msa1246880 | 0.854595 | 1.108553e-61 | -8.615850e-47 |
| Msa0639610 | Msa1246880 | 0.814873 | 1.234443e-51 | -8.615850e-47 |
| Msa0694370 | Msa1246880 | 0.835151 | 1.983176e-56 | -8.615850e-47 |
| Msa0726140 | Msa1246880 | 0.863529 | 2.333495e-64 | -8.615850e-47 |
| Msa0729800 | Msa1246880 | 0.852383 | 4.787412e-61 | -8.615850e-47 |
| Msa0732310 | Msa1246880 | 0.836087 | 1.149184e-56 | -8.615850e-47 |
| Msa0732710 | Msa1246880 | 0.818031 | 2.423199e-52 | -8.615850e-47 |
| Msa0733290 | Msa1246880 | 0.854200 | 1.442006e-61 | -8.615850e-47 |
| Msa0735080 | Msa1246880 | 0.808712 | 2.707169e-50 | -8.615850e-47 |
| Msa0743810 | Msa1246880 | 0.889088 | 3.311070e-73 | -8.615850e-47 |
| Msa0745060 | Msa1246880 | 0.878966 | 1.829827e-69 | -8.615850e-47 |
| Msa0767720 | Msa1246880 | 0.833863 | 4.177436e-56 | -8.615850e-47 |
| Msa0775300 | Msa1246880 | 0.801610 | 8.300399e-49 | -8.615850e-47 |
| Msa0777870 | Msa1246880 | 0.826493 | 2.631462e-54 | -8.615850e-47 |
| Msa0783160 | Msa1246880 | 0.852623 | 4.089178e-61 | -8.615850e-47 |
| Msa0784290 | Msa1246880 | 0.802118 | 6.530241e-49 | -8.615850e-47 |
| Msa0787600 | Msa1246880 | 0.844521 | 7.180537e-59 | -8.615850e-47 |
| Msa0808010 | Msa1246880 | 0.855888 | 4.661706e-62 | -8.615850e-47 |
| Msa0808020 | Msa1246880 | 0.849286 | 3.564194e-60 | -8.615850e-47 |
| Msa0824600 | Msa1246880 | 0.808262 | 3.377276e-50 | -8.615850e-47 |
| Msa0825860 | Msa1246880 | 0.884458 | 1.885698e-71 | -8.615850e-47 |
| Msa0833290 | Msa1246880 | 0.820807 | 5.641906e-53 | -8.615850e-47 |
| Msa0833300 | Msa1246880 | 0.800912 | 1.153688e-48 | -8.615850e-47 |
| Msa0123810 | Msa1246880 | 0.819973 | 8.766766e-53 | -8.615850e-47 |
| Msa0142220 | Msa1246880 | 0.817546 | 3.118301e-52 | -8.615850e-47 |
| Msa0145750 | Msa1246880 | 0.850239 | 1.930648e-60 | -8.615850e-47 |
| Msa0200000 | Msa1246880 | 0.846056 | 2.759526e-59 | -8.615850e-47 |
| Msa0227480 | Msa1246880 | 0.840048 | 1.099423e-57 | -8.615850e-47 |
| Msa0232850 | Msa1246880 | 0.856586 | 2.911678e-62 | -8.615850e-47 |
| Msa1230430 | Msa1246880 | 0.818665 | 1.741229e-52 | -8.615850e-47 |
| Msa1246880 | Msa1269670 | 0.875395 | 3.187292e-68 | -8.615850e-47 |
| Msa1246880 | Msa1270230 | 0.861417 | 1.041094e-63 | -8.615850e-47 |
| Msa1246880 | Msa1270240 | 0.852207 | 5.372747e-61 | -8.615850e-47 |
| Msa1246880 | Msa1270270 | 0.867836 | 1.020222e-65 | -8.615850e-47 |
| Msa1246880 | Msa1273230 | 0.813389 | 2.624452e-51 | -8.615850e-47 |
| Msa1246880 | Msa1283330 | 0.876391 | 1.449554e-68 | -8.615850e-47 |
| Msa1246880 | Msa1285930 | 0.861048 | 1.348814e-63 | -8.615850e-47 |
| Msa1246880 | Msa1287800 | 0.863388 | 2.579975e-64 | -8.615850e-47 |
| Msa1246880 | Msa1287810 | 0.882383 | 1.090819e-70 | -8.615850e-47 |
| Msa1246880 | Msa1289420 | 0.800909 | 1.155158e-48 | -8.615850e-47 |
| Msa1246880 | Msa1289430 | 0.825980 | 3.486166e-54 | -8.615850e-47 |
| Msa1246880 | Msa1297210 | 0.812746 | 3.630469e-51 | -8.615850e-47 |
| Msa1246880 | Msa1305480 | 0.838951 | 2.119744e-57 | -8.615850e-47 |
| Msa1246880 | Msa1307890 | 0.820181 | 7.855587e-53 | -8.615850e-47 |
| Msa1246880 | Msa1320300 | 0.849246 | 3.657875e-60 | -8.615850e-47 |
| Msa1246880 | Msa1340590 | 0.863252 | 2.842838e-64 | -8.615850e-47 |
| Msa1246880 | Msa1342200 | 0.803368 | 3.604158e-49 | -8.615850e-47 |
| Msa1246880 | Msa1344520 | 0.822374 | 2.451040e-53 | -8.615850e-47 |
| Msa1246880 | Msa1369430 | 0.813930 | 1.994713e-51 | -8.615850e-47 |
| Msa1246880 | Msa1386330 | 0.825657 | 4.160234e-54 | -8.615850e-47 |
| Msa1246880 | Msa1397580 | 0.853256 | 2.694253e-61 | -8.615850e-47 |
| Msa1246880 | Msa1402790 | 0.823861 | 1.102861e-53 | -8.615850e-47 |
| Msa1246880 | Msa1404000 | 0.863189 | 2.972577e-64 | -8.615850e-47 |
| Msa1246880 | Msa1408780 | 0.805887 | 1.074285e-49 | -8.615850e-47 |
| Msa1246880 | Msa1415310 | 0.872013 | 4.406844e-67 | -8.615850e-47 |
| Msa1246880 | Msa1422180 | 0.870373 | 1.532651e-66 | -8.615850e-47 |
| Msa1246880 | Msa1433120 | 0.850120 | 2.084865e-60 | -8.615850e-47 |
| Msa0365500 | Msa1246880 | 0.827656 | 1.387136e-54 | -8.615850e-47 |
| Msa0384800 | Msa1246880 | 0.854277 | 1.370199e-61 | -8.615850e-47 |
| Msa0384890 | Msa1246880 | 0.808092 | 3.671111e-50 | -8.615850e-47 |
| Msa0406120 | Msa1246880 | 0.816176 | 6.327918e-52 | -8.615850e-47 |
| Msa0414410 | Msa1246880 | 0.852081 | 5.834425e-61 | -8.615850e-47 |
| Msa0414420 | Msa1246880 | 0.878409 | 2.875390e-69 | -8.615850e-47 |
| Msa0435230 | Msa1246880 | 0.825424 | 4.723275e-54 | -8.615850e-47 |
| Msa0436780 | Msa1246880 | 0.841679 | 4.105112e-58 | -8.615850e-47 |
| Msa0438620 | Msa1246880 | 0.808770 | 2.630496e-50 | -8.615850e-47 |
| Msa0450000 | Msa1246880 | 0.825191 | 5.363292e-54 | -8.615850e-47 |
| Msa0451730 | Msa1246880 | 0.834477 | 2.930110e-56 | -8.615850e-47 |
| Msa0452900 | Msa1246880 | 0.895610 | 8.141637e-76 | -8.615850e-47 |
| Msa0452910 | Msa1246880 | 0.811116 | 8.223390e-51 | -8.615850e-47 |
| Msa0453120 | Msa1246880 | 0.851371 | 9.267770e-61 | -8.615850e-47 |
| Msa0454370 | Msa1246880 | 0.817346 | 3.457929e-52 | -8.615850e-47 |
| Msa0454910 | Msa1246880 | 0.838394 | 2.952106e-57 | -8.615850e-47 |
| Msa0459160 | Msa1246880 | 0.827947 | 1.180856e-54 | -8.615850e-47 |
| Msa0459170 | Msa1246880 | 0.811577 | 6.531211e-51 | -8.615850e-47 |
| Msa0479340 | Msa1246880 | 0.812787 | 3.555996e-51 | -8.615850e-47 |
| Msa0979850 | Msa1246880 | 0.803347 | 3.639986e-49 | -8.615850e-47 |
| Msa0981370 | Msa1246880 | 0.823664 | 1.226268e-53 | -8.615850e-47 |
| Msa0986360 | Msa1246880 | 0.812157 | 4.882205e-51 | -8.615850e-47 |
| Msa0989060 | Msa1246880 | 0.870714 | 1.184415e-66 | -8.615850e-47 |
| Msa1016280 | Msa1246880 | 0.858653 | 7.108644e-63 | -8.615850e-47 |
| Msa1024240 | Msa1246880 | 0.808870 | 2.503915e-50 | -8.615850e-47 |
| Msa1025360 | Msa1246880 | 0.876748 | 1.090784e-68 | -8.615850e-47 |
| Msa1025370 | Msa1246880 | 0.882100 | 1.382218e-70 | -8.615850e-47 |
| Msa1044830 | Msa1246880 | 0.873921 | 1.010995e-67 | -8.615850e-47 |
| Msa1044840 | Msa1246880 | 0.879001 | 1.778652e-69 | -8.615850e-47 |
| Msa1057920 | Msa1246880 | 0.800160 | 1.641726e-48 | -8.615850e-47 |
| Msa1060840 | Msa1246880 | 0.831736 | 1.409623e-55 | -8.615850e-47 |
| Msa1092990 | Msa1246880 | 0.866827 | 2.144712e-65 | -8.615850e-47 |
| Msa1096580 | Msa1246880 | 0.821630 | 3.644604e-53 | -8.615850e-47 |
| Msa1100980 | Msa1246880 | 0.883122 | 5.857646e-71 | -8.615850e-47 |
| Msa0267000 | Msa1246880 | 0.868935 | 4.511287e-66 | -8.615850e-47 |
| Msa0267010 | Msa1246880 | 0.871283 | 7.688621e-67 | -8.615850e-47 |
| Msa0270520 | Msa1246880 | 0.818520 | 1.878503e-52 | -8.615850e-47 |
| Msa0282310 | Msa1246880 | 0.805722 | 1.163979e-49 | -8.615850e-47 |
| Msa0306460 | Msa1246880 | 0.814357 | 1.605467e-51 | -8.615850e-47 |
| Msa0311750 | Msa1246880 | 0.807664 | 4.524998e-50 | -8.615850e-47 |
| Msa0342240 | Msa1246880 | 0.861056 | 1.341094e-63 | -8.615850e-47 |
| Msa0360510 | Msa1246880 | 0.840027 | 1.113450e-57 | -8.615850e-47 |
| Msa1109440 | Msa1246880 | 0.832775 | 7.798597e-56 | -8.615850e-47 |
| Msa1112300 | Msa1246880 | 0.805595 | 1.237259e-49 | -8.615850e-47 |
| Msa1121200 | Msa1246880 | 0.849679 | 2.770211e-60 | -8.615850e-47 |
| Msa1135740 | Msa1246880 | 0.862872 | 3.724345e-64 | -8.615850e-47 |
| Msa1136090 | Msa1246880 | 0.826244 | 3.016444e-54 | -8.615850e-47 |
| Msa1146110 | Msa1246880 | 0.850547 | 1.582173e-60 | -8.615850e-47 |
| Msa1149360 | Msa1246880 | 0.803981 | 2.688884e-49 | -8.615850e-47 |
| Msa1150370 | Msa1246880 | 0.828961 | 6.720018e-55 | -8.615850e-47 |
| Msa1164120 | Msa1246880 | 0.830111 | 3.530185e-55 | -8.615850e-47 |
| Msa1173920 | Msa1246880 | 0.822957 | 1.793993e-53 | -8.615850e-47 |
| Msa1177100 | Msa1246880 | 0.802538 | 5.350114e-49 | -8.615850e-47 |
| Msa1178340 | Msa1246880 | 0.803523 | 3.347007e-49 | -8.615850e-47 |
| Msa1182090 | Msa1246880 | 0.809681 | 1.677597e-50 | -8.615850e-47 |
| Msa1187940 | Msa1246880 | 0.851356 | 9.361557e-61 | -8.615850e-47 |
| Msa1187950 | Msa1246880 | 0.843439 | 1.400337e-58 | -8.615850e-47 |
| Msa1192640 | Msa1246880 | 0.851344 | 9.437897e-61 | -8.615850e-47 |
| Msa0491590 | Msa1246880 | 0.857469 | 1.598127e-62 | -8.615850e-47 |
| Msa0502760 | Msa1246880 | 0.815591 | 8.547453e-52 | -8.615850e-47 |
| Msa0506270 | Msa1246880 | 0.850996 | 1.183075e-60 | -8.615850e-47 |
| Msa0548060 | Msa1246880 | 0.807570 | 4.739554e-50 | -8.615850e-47 |
| Msa0564890 | Msa1246880 | 0.846453 | 2.151718e-59 | -8.615850e-47 |
| Msa0596150 | Msa1246880 | 0.862066 | 6.591228e-64 | -8.615850e-47 |
| Msa0846210 | Msa1246880 | 0.823626 | 1.251496e-53 | -8.615850e-47 |
| Msa0846330 | Msa1246880 | 0.847884 | 8.714729e-60 | -8.615850e-47 |
| Msa0846350 | Msa1246880 | 0.845656 | 3.543501e-59 | -8.615850e-47 |
| Msa0848960 | Msa1246880 | 0.813134 | 2.984320e-51 | -8.615850e-47 |
| Msa0854980 | Msa1246880 | 0.845233 | 4.613430e-59 | -8.615850e-47 |
| Msa0858980 | Msa1246880 | 0.812672 | 3.768984e-51 | -8.615850e-47 |
| Msa0865320 | Msa1246880 | 0.865093 | 7.582913e-65 | -8.615850e-47 |
| Msa0873460 | Msa1246880 | 0.803368 | 3.604960e-49 | -8.615850e-47 |
| Msa0885280 | Msa1246880 | 0.808307 | 3.302549e-50 | -8.615850e-47 |
| Msa0885290 | Msa1246880 | 0.840072 | 1.083648e-57 | -8.615850e-47 |
| Msa0888370 | Msa1246880 | 0.849488 | 3.132045e-60 | -8.615850e-47 |
| Msa0896080 | Msa1246880 | 0.814008 | 1.916983e-51 | -8.615850e-47 |
| Msa0899450 | Msa1246880 | 0.800617 | 1.325378e-48 | -8.615850e-47 |
| Msa0907260 | Msa1246880 | 0.808964 | 2.390401e-50 | -8.615850e-47 |
| Msa0954910 | Msa1246880 | 0.801930 | 7.135137e-49 | -8.615850e-47 |
| Msa0957860 | Msa1246880 | 0.833735 | 4.495002e-56 | -8.615850e-47 |
| Msa0957960 | Msa1246880 | 0.834161 | 3.516484e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246880 | MtrunA17_Chr5g0442971 | 60.526 | 114 | 29 | 1 | 6 | 103 | 424 | 537 | 1.07e-34 | 126 |
| Msa1246880 | MtrunA17_Chr5g0443151 | 57.658 | 111 | 27 | 2 | 6 | 96 | 175 | 285 | 1.72e-28 | 108 |
| Msa1246880 | MtrunA17_Chr5g0443141 | 62.500 | 64 | 24 | 0 | 6 | 69 | 3 | 66 | 1.08e-19 | 82.4 |
| Msa1246880 | MtrunA17_Chr5g0443181 | 51.852 | 81 | 39 | 0 | 6 | 86 | 272 | 352 | 1.17e-18 | 79.7 |
| Msa1246880 | MtrunA17_Chr5g0439971 | 60.784 | 51 | 20 | 0 | 6 | 56 | 772 | 822 | 9.23e-14 | 66.6 |
| Msa1246880 | MtrunA17_Chr3g0119031 | 55.000 | 60 | 26 | 1 | 6 | 64 | 767 | 826 | 5.40e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTGTAGTAGAAGCTTTC+TGG | 0.175123 | 8_2:+38997419 | None:intergenic |
| TTCCAATGATTCTTCATCTT+TGG | 0.181692 | 8_2:+38997181 | None:intergenic |
| CCATGAATGCAGTTAGAAAA+TGG | 0.255703 | 8_2:-38997457 | Msa1246880:intron |
| TCATTAGCAGAGGAAGAAAA+AGG | 0.334938 | 8_2:+38997206 | None:intergenic |
| TTCTCATGTGCCTTTATACT+TGG | 0.341087 | 8_2:-38997377 | Msa1246880:CDS |
| CAATTCTGCTCCAACTCCTT+TGG | 0.341180 | 8_2:+38995992 | None:intergenic |
| TGCACATATTCCAAGTATAA+AGG | 0.396963 | 8_2:+38997367 | None:intergenic |
| AACCAAAGATGAAGAATCAT+TGG | 0.407579 | 8_2:-38997183 | Msa1246880:CDS |
| AAATTCCACACCAAAGGAGT+TGG | 0.477307 | 8_2:-38996002 | Msa1246880:CDS |
| GGAATATGTGCACAATCGCC+AGG | 0.502785 | 8_2:-38997356 | Msa1246880:intron |
| GCTGACTAATATTGAAGTGT+TGG | 0.508117 | 8_2:+38997112 | None:intergenic |
| AATATTAGTCAGCATAGACT+TGG | 0.541731 | 8_2:-38997102 | Msa1246880:CDS |
| ATCTTTGGTTTCATTAGCAG+AGG | 0.553118 | 8_2:+38997196 | None:intergenic |
| CTGCTCCAACTCCTTTGGTG+TGG | 0.581033 | 8_2:+38995997 | None:intergenic |
| AGTGTTGGCTTCATCATGAG+TGG | 0.599112 | 8_2:+38997127 | None:intergenic |
| AGTTTCAAATTCCACACCAA+AGG | 0.600607 | 8_2:-38996008 | Msa1246880:CDS |
| GTGGAATTTGAAACTCTCAA+AGG | 0.634403 | 8_2:+38996016 | None:intergenic |
| ATAAAGGCACATGAGAATAG+CGG | 0.661853 | 8_2:+38997383 | None:intergenic |
| AATTGATGCTATGATAGACG+AGG | 0.695057 | 8_2:-38997075 | Msa1246880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAGAAGATTTAAGA+GGG | + | chr8_2:38996200-38996219 | None:intergenic | 15.0% |
| !! | ATAAAATAAGAAGATTTAAG+AGG | + | chr8_2:38996201-38996220 | None:intergenic | 15.0% |
| !!! | AATAAATTTTATGTCAACTA+AGG | + | chr8_2:38996501-38996520 | None:intergenic | 15.0% |
| !! | ATAAAATTTATTTCCTTTGA+TGG | - | chr8_2:38996509-38996528 | Msa1246880:intron | 15.0% |
| !! | TTTATTATTTATCTGTTGTA+TGG | - | chr8_2:38996662-38996681 | Msa1246880:intron | 15.0% |
| !!! | ATTTTCTTTTTCATGTATAA+AGG | - | chr8_2:38997164-38997183 | Msa1246880:CDS | 15.0% |
| !! | AGCATAAAACATAAATTAGA+GGG | + | chr8_2:38996298-38996317 | None:intergenic | 20.0% |
| !! | TGTTAATATAGTGATTATCA+TGG | - | chr8_2:38996347-38996366 | Msa1246880:intron | 20.0% |
| !!! | TTGCATTAGATTTCATTTTT+TGG | - | chr8_2:38996374-38996393 | Msa1246880:intron | 20.0% |
| !!! | TGCATTAGATTTCATTTTTT+GGG | - | chr8_2:38996375-38996394 | Msa1246880:intron | 20.0% |
| !!! | ATTTATTCATTCCTTTTTCT+AGG | - | chr8_2:38997230-38997249 | Msa1246880:intron | 20.0% |
| !! | TAAAAGTAATTTCAGAAACT+TGG | - | chr8_2:38997507-38997526 | Msa1246880:intron | 20.0% |
| ! | AAGTATAATTGAAAAGCTTC+AGG | + | chr8_2:38996166-38996185 | None:intergenic | 25.0% |
| ! | CAGCATAAAACATAAATTAG+AGG | + | chr8_2:38996299-38996318 | None:intergenic | 25.0% |
| ! | AATATAGTGATTATCATGGT+TGG | - | chr8_2:38996351-38996370 | Msa1246880:intron | 25.0% |
| !!! | TGTGATTTTGACATATATTG+AGG | - | chr8_2:38996464-38996483 | Msa1246880:intron | 25.0% |
| ! | TTGACATATATTGAGGTAAA+AGG | - | chr8_2:38996471-38996490 | Msa1246880:intron | 25.0% |
| ! | CTTAACAAGGTTAAATAAAC+TGG | - | chr8_2:38996583-38996602 | Msa1246880:intron | 25.0% |
| !!! | ATAAGCTTGCTAGTAATTAA+TGG | - | chr8_2:38996733-38996752 | Msa1246880:intron | 25.0% |
| ! | AACAATAGGCATAATGAATT+CGG | + | chr8_2:38996886-38996905 | None:intergenic | 25.0% |
| ! | AATGTTAATTTCTTGTCAAC+AGG | + | chr8_2:38996948-38996967 | None:intergenic | 25.0% |
| ! | ATTAACATTTGAAGAAAGTG+AGG | - | chr8_2:38996959-38996978 | Msa1246880:intron | 25.0% |
| ! | TACATGAAAAAGAAAATACC+TGG | + | chr8_2:38997161-38997180 | None:intergenic | 25.0% |
| !! | TAAATGTGTAGCTTTCATTT+TGG | + | chr8_2:38997215-38997234 | None:intergenic | 25.0% |
| ! | TAGTTCTTACAGTAATGAAA+TGG | + | chr8_2:38997489-38997508 | None:intergenic | 25.0% |
| ! | TTAAAACACTCTAACAAGTA+TGG | - | chr8_2:38997645-38997664 | Msa1246880:intron | 25.0% |
| ! | TAAAACACTCTAACAAGTAT+GGG | - | chr8_2:38997646-38997665 | Msa1246880:intron | 25.0% |
| ! | TCTCATTATAGAAGTTTGAT+TGG | + | chr8_2:38998434-38998453 | None:intergenic | 25.0% |
| ATTGCTAACATGTGATATGT+AGG | - | chr8_2:38996005-38996024 | Msa1246880:CDS | 30.0% | |
| AGATAGAATTAACTGTTGAC+CGG | + | chr8_2:38996402-38996421 | None:intergenic | 30.0% | |
| !! | GTTAGCTTCTTCTTTTACTA+AGG | - | chr8_2:38996424-38996443 | Msa1246880:intron | 30.0% |
| ACATATATTGAGGTAAAAGG+TGG | - | chr8_2:38996474-38996493 | Msa1246880:intron | 30.0% | |
| TCAAACATAACTTCCATCAA+AGG | + | chr8_2:38996525-38996544 | None:intergenic | 30.0% | |
| TTGATGGAAGTTATGTTTGA+AGG | - | chr8_2:38996525-38996544 | Msa1246880:intron | 30.0% | |
| AACCTTGTTAAGATTTCTGA+CGG | + | chr8_2:38996575-38996594 | None:intergenic | 30.0% | |
| TTGCATATGACTTACCATAA+GGG | - | chr8_2:38996795-38996814 | Msa1246880:intron | 30.0% | |
| TAAAAAGTTCCTTTCCCTTA+TGG | + | chr8_2:38996812-38996831 | None:intergenic | 30.0% | |
| TGCACATATTCCAAGTATAA+AGG | + | chr8_2:38997132-38997151 | None:intergenic | 30.0% | |
| ! | ATAAAGGCAATTAGTTTCGT+CGG | - | chr8_2:38997180-38997199 | Msa1246880:CDS | 30.0% |
| ! | TTCAAGTTTAGCCTAGAAAA+AGG | + | chr8_2:38997244-38997263 | None:intergenic | 30.0% |
| AACCAAAGATGAAGAATCAT+TGG | - | chr8_2:38997313-38997332 | Msa1246880:intron | 30.0% | |
| TTCCAATGATTCTTCATCTT+TGG | + | chr8_2:38997318-38997337 | None:intergenic | 30.0% | |
| AATATTAGTCAGCATAGACT+TGG | - | chr8_2:38997394-38997413 | Msa1246880:CDS | 30.0% | |
| !!! | GTTTTAAGACTTTGTAACCT+TGG | + | chr8_2:38997632-38997651 | None:intergenic | 30.0% |
| !! | AACTTTTCAAACTTAGCTCT+TGG | - | chr8_2:38997819-38997838 | Msa1246880:intron | 30.0% |
| AGGAAAATACTCTATGACTT+GGG | + | chr8_2:38998047-38998066 | None:intergenic | 30.0% | |
| ! | AGTGAAAATGGAAGTTTGTT+AGG | + | chr8_2:38998251-38998270 | None:intergenic | 30.0% |
| ! | AACAAACTTCCATTTTCACT+TGG | - | chr8_2:38998251-38998270 | Msa1246880:intron | 30.0% |
| ! | GTACTACTCAATTTGGAATA+TGG | + | chr8_2:38998283-38998302 | None:intergenic | 30.0% |
| ! | AGGGTACTTAGATATGTTAA+GGG | + | chr8_2:38998305-38998324 | None:intergenic | 30.0% |
| AACATGTGATATGTAGGAAG+AGG | - | chr8_2:38996011-38996030 | Msa1246880:CDS | 35.0% | |
| ! | GAAGAGGATGCTAAATCTTT+TGG | - | chr8_2:38996027-38996046 | Msa1246880:CDS | 35.0% |
| TTCCTCAACATGTGTGTTAA+TGG | + | chr8_2:38996117-38996136 | None:intergenic | 35.0% | |
| !!! | ATCTCTGCTTGTTAGCTTTT+AGG | - | chr8_2:38996230-38996249 | Msa1246880:intron | 35.0% |
| !!! | TAGATTTCATTTTTTGGGCC+CGG | - | chr8_2:38996380-38996399 | Msa1246880:intron | 35.0% |
| GATAGAATTAACTGTTGACC+GGG | + | chr8_2:38996401-38996420 | None:intergenic | 35.0% | |
| ACAAGGTTAAATAAACTGGC+TGG | - | chr8_2:38996587-38996606 | Msa1246880:intron | 35.0% | |
| TAAAGTTCAATTCCTTCGTC+AGG | + | chr8_2:38996620-38996639 | None:intergenic | 35.0% | |
| CGAAGGAATTGAACTTTATG+AGG | - | chr8_2:38996622-38996641 | Msa1246880:intron | 35.0% | |
| GGAATTGAACTTTATGAGGT+TGG | - | chr8_2:38996626-38996645 | Msa1246880:intron | 35.0% | |
| CTTGCATATGACTTACCATA+AGG | - | chr8_2:38996794-38996813 | Msa1246880:intron | 35.0% | |
| TATGACTTACCATAAGGGAA+AGG | - | chr8_2:38996800-38996819 | Msa1246880:intron | 35.0% | |
| ! | AGGGAAAGGAACTTTTTATC+AGG | - | chr8_2:38996814-38996833 | Msa1246880:intron | 35.0% |
| TTATAAGTCACTCAGAGATC+AGG | + | chr8_2:38996850-38996869 | None:intergenic | 35.0% | |
| ATAATCTCCTGCACAACAAT+AGG | + | chr8_2:38996900-38996919 | None:intergenic | 35.0% | |
| CATTTGAAGAAAGTGAGGTA+TGG | - | chr8_2:38996964-38996983 | Msa1246880:intron | 35.0% | |
| CAATTATACTGTGCATCAAG+CGG | + | chr8_2:38996997-38997016 | None:intergenic | 35.0% | |
| ! | CCATTTTCTAACTGCATTCA+TGG | + | chr8_2:38997042-38997061 | None:intergenic | 35.0% |
| CCATGAATGCAGTTAGAAAA+TGG | - | chr8_2:38997039-38997058 | Msa1246880:intron | 35.0% | |
| TATCTGTAGTAGAAGCTTTC+TGG | + | chr8_2:38997080-38997099 | None:intergenic | 35.0% | |
| ! | ATAAAGGCACATGAGAATAG+CGG | + | chr8_2:38997116-38997135 | None:intergenic | 35.0% |
| TTCTCATGTGCCTTTATACT+TGG | - | chr8_2:38997119-38997138 | Msa1246880:CDS | 35.0% | |
| !!! | TGAACGTTTTTTCCTTGTTC+AGG | - | chr8_2:38997265-38997284 | Msa1246880:intron | 35.0% |
| !!! | GAACGTTTTTTCCTTGTTCA+GGG | - | chr8_2:38997266-38997285 | Msa1246880:intron | 35.0% |
| TCATTAGCAGAGGAAGAAAA+AGG | + | chr8_2:38997293-38997312 | None:intergenic | 35.0% | |
| ! | ATCTTTGGTTTCATTAGCAG+AGG | + | chr8_2:38997303-38997322 | None:intergenic | 35.0% |
| GCTGACTAATATTGAAGTGT+TGG | + | chr8_2:38997387-38997406 | None:intergenic | 35.0% | |
| AATTGATGCTATGATAGACG+AGG | - | chr8_2:38997421-38997440 | Msa1246880:CDS | 35.0% | |
| !! | ATCGACAGAGTTTTATCAGA+AGG | - | chr8_2:38997458-38997477 | Msa1246880:intron | 35.0% |
| !! | TCGACAGAGTTTTATCAGAA+GGG | - | chr8_2:38997459-38997478 | Msa1246880:intron | 35.0% |
| AAACAGAAAAAGTGAACAGC+AGG | - | chr8_2:38997582-38997601 | Msa1246880:intron | 35.0% | |
| AAGACTTTGTAACCTTGGTT+AGG | + | chr8_2:38997627-38997646 | None:intergenic | 35.0% | |
| GAAAAGTTTCGAGAATTGCT+TGG | + | chr8_2:38997807-38997826 | None:intergenic | 35.0% | |
| GTACTTCACTTGAATATGCT+TGG | - | chr8_2:38997935-38997954 | Msa1246880:intron | 35.0% | |
| !! | TTGGTTTTTCCATGTTGAAC+TGG | - | chr8_2:38997954-38997973 | Msa1246880:intron | 35.0% |
| GAGGAAAATACTCTATGACT+TGG | + | chr8_2:38998048-38998067 | None:intergenic | 35.0% | |
| ! | TTTTCCTCAACCAAATAGCT+TGG | - | chr8_2:38998060-38998079 | Msa1246880:intron | 35.0% |
| AGAAATTGTAGCTCAATCCA+CGG | + | chr8_2:38998123-38998142 | None:intergenic | 35.0% | |
| !!! | TATGCTTTTTCTTTAGGCTC+TGG | + | chr8_2:38998173-38998192 | None:intergenic | 35.0% |
| !!! | ACAGGCTATGCTTTTTCTTT+AGG | + | chr8_2:38998179-38998198 | None:intergenic | 35.0% |
| !! | AGGCTATGTTGATAGTGATT+GGG | + | chr8_2:38998231-38998250 | None:intergenic | 35.0% |
| !! | TAGGCTATGTTGATAGTGAT+TGG | + | chr8_2:38998232-38998251 | None:intergenic | 35.0% |
| !! | GTTAAGGGTACTACTCAATT+TGG | + | chr8_2:38998290-38998309 | None:intergenic | 35.0% |
| !! | GAGGGTACTTAGATATGTTA+AGG | + | chr8_2:38998306-38998325 | None:intergenic | 35.0% |
| CTTGTTGCATACATAAGATC+AGG | - | chr8_2:38998380-38998399 | Msa1246880:intron | 35.0% | |
| ! | GTGGAATTTGAAACTCTCAA+AGG | + | chr8_2:38998483-38998502 | None:intergenic | 35.0% |
| AGTTTCAAATTCCACACCAA+AGG | - | chr8_2:38998488-38998507 | Msa1246880:intron | 35.0% | |
| !! | AAAAGTGTTTGGGATTGAGC+TGG | + | chr8_2:38996057-38996076 | None:intergenic | 40.0% |
| ! | AGCTCAATCCCAAACACTTT+TGG | - | chr8_2:38996056-38996075 | Msa1246880:intron | 40.0% |
| ! | GCTCAATCCCAAACACTTTT+GGG | - | chr8_2:38996057-38996076 | Msa1246880:intron | 40.0% |
| !! | TCCCAAACACTTTTGGGTAT+TGG | - | chr8_2:38996063-38996082 | Msa1246880:intron | 40.0% |
| !! | GCCAATACCCAAAAGTGTTT+GGG | + | chr8_2:38996067-38996086 | None:intergenic | 40.0% |
| !! | TGCCAATACCCAAAAGTGTT+TGG | + | chr8_2:38996068-38996087 | None:intergenic | 40.0% |
| GTCCATTAACACACATGTTG+AGG | - | chr8_2:38996112-38996131 | Msa1246880:intron | 40.0% | |
| AGGCATTCTCATGAACTTAC+AGG | + | chr8_2:38996146-38996165 | None:intergenic | 40.0% | |
| !!! | GTTAGCTTTTAGGCAAATGC+TGG | - | chr8_2:38996240-38996259 | Msa1246880:intron | 40.0% |
| AGCCGTCAGAAATCTTAACA+AGG | - | chr8_2:38996570-38996589 | Msa1246880:intron | 40.0% | |
| CATTATGCCTATTGTTGTGC+AGG | - | chr8_2:38996890-38996909 | Msa1246880:intron | 40.0% | |
| CGCTTGATGCACAGTATAAT+TGG | - | chr8_2:38996995-38997014 | Msa1246880:intron | 40.0% | |
| AAGAAAAAGGTCCCTGAACA+AGG | + | chr8_2:38997280-38997299 | None:intergenic | 40.0% | |
| AAGTTACCTCTGCAGAAGTA+TGG | + | chr8_2:38997675-38997694 | None:intergenic | 40.0% | |
| ! | AACACTCCTCCTTGAGATTT+TGG | - | chr8_2:38997772-38997791 | Msa1246880:intron | 40.0% |
| AGTGTCCATCCAAAATCTCA+AGG | + | chr8_2:38997784-38997803 | None:intergenic | 40.0% | |
| GCTGAAAATCCAGTTCAACA+TGG | + | chr8_2:38997966-38997985 | None:intergenic | 40.0% | |
| CAAACCAAGCTATTTGGTTG+AGG | + | chr8_2:38998067-38998086 | None:intergenic | 40.0% | |
| !! | GATGACATGAAGAGTACTAC+AGG | + | chr8_2:38998197-38998216 | None:intergenic | 40.0% |
| !! | TATGTTGATAGTGATTGGGC+TGG | + | chr8_2:38998227-38998246 | None:intergenic | 40.0% |
| TGGTACAAGCCAAGTGAAAA+TGG | + | chr8_2:38998263-38998282 | None:intergenic | 40.0% | |
| ! | ACATTTTGCTGCAGCAAAGA+GGG | + | chr8_2:38998324-38998343 | None:intergenic | 40.0% |
| AAATTCCACACCAAAGGAGT+TGG | - | chr8_2:38998494-38998513 | Msa1246880:intron | 40.0% | |
| AACACACATGTTGAGGAAGC+AGG | - | chr8_2:38996119-38996138 | Msa1246880:intron | 45.0% | |
| ACAGGCTCACACATGACATT+TGG | + | chr8_2:38996930-38996949 | None:intergenic | 45.0% | |
| !! | AGTGTTGGCTTCATCATGAG+TGG | + | chr8_2:38997372-38997391 | None:intergenic | 45.0% |
| AGTAGTCTGTCACCTAACCA+AGG | - | chr8_2:38997612-38997631 | Msa1246880:intron | 45.0% | |
| ! | CTCCTCCTTGAGATTTTGGA+TGG | - | chr8_2:38997776-38997795 | Msa1246880:intron | 45.0% |
| GTCCATCCAAAATCTCAAGG+AGG | + | chr8_2:38997781-38997800 | None:intergenic | 45.0% | |
| ! | ATTTTTGACAGCCTCGCGTA+TGG | - | chr8_2:38997908-38997927 | Msa1246880:intron | 45.0% |
| ! | TGACTTGGGAATACAACAGC+TGG | + | chr8_2:38998033-38998052 | None:intergenic | 45.0% |
| CAGCAGCAAACCAAGCTATT+TGG | + | chr8_2:38998073-38998092 | None:intergenic | 45.0% | |
| ! | CACATTTTGCTGCAGCAAAG+AGG | + | chr8_2:38998325-38998344 | None:intergenic | 45.0% |
| TGCTGCAGCAAAATGTGTCT+TGG | - | chr8_2:38998328-38998347 | Msa1246880:intron | 45.0% | |
| GCAGCAAAATGTGTCTTGGT+AGG | - | chr8_2:38998332-38998351 | Msa1246880:intron | 45.0% | |
| CAATTCTGCTCCAACTCCTT+TGG | + | chr8_2:38998507-38998526 | None:intergenic | 45.0% | |
| GGAATATGTGCACAATCGCC+AGG | - | chr8_2:38997140-38997159 | Msa1246880:CDS | 50.0% | |
| GCATGTTCTCATGGAACTCG+AGG | + | chr8_2:38998151-38998170 | None:intergenic | 50.0% | |
| ! | TAGGCTCTGGCATGTTCTCA+TGG | + | chr8_2:38998160-38998179 | None:intergenic | 50.0% |
| GCTGGTTACGATCCTGACGA+AGG | - | chr8_2:38996605-38996624 | Msa1246880:intron | 55.0% | |
| GGGTCACCATACTTCTGCAG+AGG | - | chr8_2:38997666-38997685 | Msa1246880:intron | 55.0% | |
| ! | GAAGTACCATGCCATACGCG+AGG | + | chr8_2:38997922-38997941 | None:intergenic | 55.0% |
| !! | TTGGTTTGCTGCTGCAGCTG+CGG | - | chr8_2:38998079-38998098 | Msa1246880:intron | 55.0% |
| TGTAGCTCAATCCACGGCTG+AGG | + | chr8_2:38998117-38998136 | None:intergenic | 55.0% | |
| CTGCTCCAACTCCTTTGGTG+TGG | + | chr8_2:38998502-38998521 | None:intergenic | 55.0% | |
| TGACAGCCTCGCGTATGGCA+TGG | - | chr8_2:38997913-38997932 | Msa1246880:intron | 60.0% | |
| TACGTACTCTGCCTCAGCCG+TGG | - | chr8_2:38998103-38998122 | Msa1246880:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 38995976 | 38998542 | 38995976 | ID=Msa1246880;Name=Msa1246880 |
| chr8_2 | mRNA | 38995976 | 38998542 | 38995976 | ID=Msa1246880-mRNA-1;Parent=Msa1246880;Name=Msa1246880-mRNA-1;_AED=0.57;_eAED=0.60;_QI=0|0|0.2|0.4|1|1|5|0|125 |
| chr8_2 | exon | 38998536 | 38998542 | 38998536 | ID=Msa1246880-mRNA-1:exon:12094;Parent=Msa1246880-mRNA-1 |
| chr8_2 | exon | 38997599 | 38997606 | 38997599 | ID=Msa1246880-mRNA-1:exon:12093;Parent=Msa1246880-mRNA-1 |
| chr8_2 | exon | 38997357 | 38997467 | 38997357 | ID=Msa1246880-mRNA-1:exon:12092;Parent=Msa1246880-mRNA-1 |
| chr8_2 | exon | 38997052 | 38997231 | 38997052 | ID=Msa1246880-mRNA-1:exon:12091;Parent=Msa1246880-mRNA-1 |
| chr8_2 | exon | 38995976 | 38996047 | 38995976 | ID=Msa1246880-mRNA-1:exon:12090;Parent=Msa1246880-mRNA-1 |
| chr8_2 | CDS | 38998536 | 38998542 | 38998536 | ID=Msa1246880-mRNA-1:cds;Parent=Msa1246880-mRNA-1 |
| chr8_2 | CDS | 38997599 | 38997606 | 38997599 | ID=Msa1246880-mRNA-1:cds;Parent=Msa1246880-mRNA-1 |
| chr8_2 | CDS | 38997357 | 38997467 | 38997357 | ID=Msa1246880-mRNA-1:cds;Parent=Msa1246880-mRNA-1 |
| chr8_2 | CDS | 38997052 | 38997231 | 38997052 | ID=Msa1246880-mRNA-1:cds;Parent=Msa1246880-mRNA-1 |
| chr8_2 | CDS | 38995976 | 38996047 | 38995976 | ID=Msa1246880-mRNA-1:cds;Parent=Msa1246880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
