Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182160 | sp|O48890|NRPB4_ARATH | 90.580 | 138 | 13 | 0 | 1 | 138 | 1 | 138 | 6.03e-91 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182160 | G7LF25 | 100.000 | 138 | 0 | 0 | 1 | 138 | 1 | 138 | 9.03e-96 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057140 | Msa1182160 | 0.803226 | 3.856438e-49 | -8.615850e-47 |
| Msa0735310 | Msa1182160 | 0.802097 | 6.593653e-49 | -8.615850e-47 |
| Msa0743990 | Msa1182160 | 0.807938 | 3.958279e-50 | -8.615850e-47 |
| Msa0165950 | Msa1182160 | 0.802925 | 4.451595e-49 | -8.615850e-47 |
| Msa0236270 | Msa1182160 | 0.803308 | 3.708835e-49 | -8.615850e-47 |
| Msa0419520 | Msa1182160 | 0.811779 | 5.901674e-51 | -8.615850e-47 |
| Msa0864290 | Msa1182160 | 0.804842 | 1.778917e-49 | -8.615850e-47 |
| Msa0960830 | Msa1182160 | 0.802350 | 5.850210e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182160 | MtrunA17_Chr8g0338791 | 100.000 | 138 | 0 | 0 | 1 | 138 | 1 | 138 | 1.74e-99 | 281 |
| Msa1182160 | MtrunA17_Chr2g0290791 | 36.441 | 118 | 72 | 2 | 22 | 137 | 84 | 200 | 5.91e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182160 | AT5G09920.1 | 90.580 | 138 | 13 | 0 | 1 | 138 | 1 | 138 | 6.13e-92 | 262 |
Find 43 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGAAGTTTCATTAATTC+TGG | 0.198654 | 8_1:+17166888 | Msa1182160:CDS |
| ATAGCTTCCTCTACAGTTTC+CGG | 0.224138 | 8_1:-17168147 | None:intergenic |
| GAAGAAAGGAACACTTGTTT+TGG | 0.281671 | 8_1:-17165770 | None:intergenic |
| ATTATTTCTACCTTGATAGA+TGG | 0.299795 | 8_1:-17168180 | None:intergenic |
| ATCACACATTTGTATGAAAT+AGG | 0.306489 | 8_1:-17169572 | None:intergenic |
| TAACCATGATTTACAAGAAC+TGG | 0.352577 | 8_1:-17169227 | None:intergenic |
| CTTCCAGTTCTTGTAAATCA+TGG | 0.375167 | 8_1:+17169224 | Msa1182160:three_prime_UTR |
| TAGCTTCCTCTACAGTTTCC+GGG | 0.391236 | 8_1:-17168146 | None:intergenic |
| ATATCAGTTGGCTGAATTTG+AGG | 0.404625 | 8_1:+17167975 | Msa1182160:CDS |
| TCACTGAGAAACTTGATTCA+TGG | 0.413264 | 8_1:-17166950 | None:intergenic |
| CGAACTTGTCTAACAGCATC+AGG | 0.447560 | 8_1:-17167368 | None:intergenic |
| ATTCTCCTATCTGCAACAAA+AGG | 0.449586 | 8_1:+17169504 | Msa1182160:intron |
| TTCTCCTATCTGCAACAAAA+GGG | 0.453724 | 8_1:+17169505 | Msa1182160:intron |
| AAGAAGGAGTGAATCATGTC+TGG | 0.463358 | 8_1:+17165958 | Msa1182160:exon |
| ACAAGTGTTCCTTTCTTCCC+AGG | 0.468818 | 8_1:+17165775 | Msa1182160:five_prime_UTR |
| TTATTGCAGCTGTGTGTCCT+AGG | 0.470406 | 8_1:+17168114 | Msa1182160:intron |
| CGAGGAGGATTTGATAGAGA+TGG | 0.470530 | 8_1:+17169367 | Msa1182160:three_prime_UTR |
| TGACGTTCACCTGGGAAGAA+AGG | 0.482659 | 8_1:-17165784 | None:intergenic |
| CGTACTAACCGGAATCAAAA+CGG | 0.489079 | 8_1:-17165829 | None:intergenic |
| TTTGGTCATGGAATAGAGGT+TGG | 0.496941 | 8_1:-17169673 | None:intergenic |
| GTGAATCATGTCTGGAGAAG+AGG | 0.498449 | 8_1:+17165966 | Msa1182160:exon |
| GCAGACAAGAGGACGGGCTC+AGG | 0.499865 | 8_1:+17169136 | Msa1182160:intron |
| CATTTGTATGAAATAGGAAC+CGG | 0.500789 | 8_1:-17169566 | None:intergenic |
| AACGCCGCTGAACTCAAAAT+CGG | 0.516766 | 8_1:+17165994 | Msa1182160:CDS |
| TGCTATGGTTCCATCTATCA+AGG | 0.518144 | 8_1:+17168170 | Msa1182160:CDS |
| CTCCTATCTGCAACAAAAGG+GGG | 0.538123 | 8_1:+17169507 | Msa1182160:intron |
| GATTTGATAGAGATGGTTTG+TGG | 0.550383 | 8_1:+17169374 | Msa1182160:three_prime_UTR |
| AGTTATTGCAGAACTCATGT+TGG | 0.556422 | 8_1:+17169315 | Msa1182160:three_prime_UTR |
| TTACTGAATTCAGCAGAAGA+AGG | 0.561152 | 8_1:+17165942 | Msa1182160:intron |
| TGTCCTAGGCAATCTTTGCC+CGG | 0.566090 | 8_1:+17168128 | Msa1182160:CDS |
| AATTCTCGCTAGATATCAGT+TGG | 0.570014 | 8_1:+17167963 | Msa1182160:CDS |
| TGACATGCAGACAAGAGGAC+GGG | 0.581736 | 8_1:+17169130 | Msa1182160:intron |
| TTGACATGCAGACAAGAGGA+CGG | 0.587911 | 8_1:+17169129 | Msa1182160:intron |
| TGTAGAGGAAGCTATTGCTA+TGG | 0.591535 | 8_1:+17168155 | Msa1182160:CDS |
| TTTCCGGGCAAAGATTGCCT+AGG | 0.601682 | 8_1:-17168131 | None:intergenic |
| GTTCTGTGATGTACTGTAAG+TGG | 0.610538 | 8_1:+17169250 | Msa1182160:three_prime_UTR |
| TCCTATCTGCAACAAAAGGG+GGG | 0.620441 | 8_1:+17169508 | Msa1182160:intron |
| TCTCCTATCTGCAACAAAAG+GGG | 0.626440 | 8_1:+17169506 | Msa1182160:intron |
| TGCATGAGACTGTGTGTGGT+AGG | 0.637244 | 8_1:+17169397 | Msa1182160:three_prime_UTR |
| TCTTTGCCCGGAAACTGTAG+AGG | 0.638263 | 8_1:+17168140 | Msa1182160:CDS |
| GCTGAACTCAAAATCGGAGA+CGG | 0.670972 | 8_1:+17166000 | Msa1182160:CDS |
| GTGGTGCATGAGACTGTGTG+TGG | 0.710236 | 8_1:+17169393 | Msa1182160:three_prime_UTR |
| TGAGATCACAGTACACACAC+CGG | 0.736309 | 8_1:+17169547 | Msa1182160:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAATCATTTATGTT+TGG | + | chr8_1:17167663-17167682 | Msa1182160:intron | 10.0% |
| !!! | TTATTAAAATTTTATTGAGT+TGG | + | chr8_1:17168407-17168426 | Msa1182160:intron | 10.0% |
| !! | AGTAAAATTTACAATTTAGT+AGG | - | chr8_1:17166271-17166290 | None:intergenic | 15.0% |
| !!! | CTTTATTTTATCTTTTGTTA+CGG | - | chr8_1:17166368-17166387 | None:intergenic | 15.0% |
| !! | TATATGAAGGTTATAAATAA+TGG | + | chr8_1:17166632-17166651 | Msa1182160:intron | 15.0% |
| !! | ATATGAAGGTTATAAATAAT+GGG | + | chr8_1:17166633-17166652 | Msa1182160:intron | 15.0% |
| !!! | AATAAAAAGTAATTTTGCTA+GGG | - | chr8_1:17167042-17167061 | None:intergenic | 15.0% |
| !!! | TTTTTAATTAAAAGCATGTT+TGG | - | chr8_1:17167831-17167850 | None:intergenic | 15.0% |
| !! | AAGGTAAAAATTTCGAATTA+GGG | - | chr8_1:17166144-17166163 | None:intergenic | 20.0% |
| !! | TAATAGAACATATTCACTTA+GGG | - | chr8_1:17166241-17166260 | None:intergenic | 20.0% |
| !! | ATAATAGAACATATTCACTT+AGG | - | chr8_1:17166242-17166261 | None:intergenic | 20.0% |
| !! | AACTAATCACTTAAAAATAG+AGG | - | chr8_1:17166610-17166629 | None:intergenic | 20.0% |
| !!! | ATAAAAAGTAATTTTGCTAG+GGG | - | chr8_1:17167041-17167060 | None:intergenic | 20.0% |
| !!! | GAATAAAAAGTAATTTTGCT+AGG | - | chr8_1:17167043-17167062 | None:intergenic | 20.0% |
| !!! | AGCAAAATTACTTTTTATTC+CGG | + | chr8_1:17167043-17167062 | Msa1182160:intron | 20.0% |
| !! | AGTATCAAAATAAAAGATCT+TGG | - | chr8_1:17167102-17167121 | None:intergenic | 20.0% |
| !! | TAATTTAGGTATTATTACAG+CGG | - | chr8_1:17167160-17167179 | None:intergenic | 20.0% |
| !!! | AAGGACATGTTATTTAATTT+AGG | - | chr8_1:17167174-17167193 | None:intergenic | 20.0% |
| !! | TCATTGAAAATATGTCAATT+GGG | - | chr8_1:17167209-17167228 | None:intergenic | 20.0% |
| !! | ATCATTGAAAATATGTCAAT+TGG | - | chr8_1:17167210-17167229 | None:intergenic | 20.0% |
| !! | AATCATGAGAAATAGAAAAT+GGG | - | chr8_1:17167423-17167442 | None:intergenic | 20.0% |
| !! | TACTTAAATGAAAATTGTGT+TGG | + | chr8_1:17167451-17167470 | Msa1182160:intron | 20.0% |
| !! | ACTTAAATGAAAATTGTGTT+GGG | + | chr8_1:17167452-17167471 | Msa1182160:intron | 20.0% |
| !! | ATATTATGAAAGAAATGACA+TGG | - | chr8_1:17167480-17167499 | None:intergenic | 20.0% |
| !! | TACTTAAATGAAAATTGTGT+TGG | + | chr8_1:17167451-17167470 | Msa1182160:intron | 20.0% |
| !! | ACTTAAATGAAAATTGTGTT+GGG | + | chr8_1:17167452-17167471 | Msa1182160:intron | 20.0% |
| !!! | AGTTTTCACATTTTATTATC+AGG | + | chr8_1:17168038-17168057 | Msa1182160:intron | 20.0% |
| !! | TTATTATCAGGATAAAGAAA+AGG | + | chr8_1:17168050-17168069 | Msa1182160:intron | 20.0% |
| !!! | TAAAATTTTATTGAGTTGGT+AGG | + | chr8_1:17168411-17168430 | Msa1182160:intron | 20.0% |
| !! | TTTACAAAAATTCCCAAAAT+TGG | + | chr8_1:17168558-17168577 | Msa1182160:intron | 20.0% |
| !! | TTTATATTTCTTCTCCTTAA+TGG | + | chr8_1:17168629-17168648 | Msa1182160:intron | 20.0% |
| !! | TAAAATAACAATGTAACAGA+AGG | - | chr8_1:17168701-17168720 | None:intergenic | 20.0% |
| !!! | AATGAAAAAACTTCATTTTC+TGG | + | chr8_1:17168791-17168810 | Msa1182160:intron | 20.0% |
| !!! | ATGAAAAAACTTCATTTTCT+GGG | + | chr8_1:17168792-17168811 | Msa1182160:intron | 20.0% |
| !! | TAACCTGATAATAATTGATA+GGG | + | chr8_1:17168863-17168882 | Msa1182160:intron | 20.0% |
| ! | GAAGGTAAAAATTTCGAATT+AGG | - | chr8_1:17166145-17166164 | None:intergenic | 25.0% |
| !! | ACATCCTAATTTTTCGTTTA+GGG | + | chr8_1:17166167-17166186 | Msa1182160:intron | 25.0% |
| !!! | CTTATTTTTATAAGCTCTCT+AGG | - | chr8_1:17166416-17166435 | None:intergenic | 25.0% |
| ! | TAGGACAAACATAAAGAATA+AGG | - | chr8_1:17166537-17166556 | None:intergenic | 25.0% |
| ! | AGTATATCACTTCAGAATAT+AGG | - | chr8_1:17166578-17166597 | None:intergenic | 25.0% |
| !! | AGTGATTAGTTAGTATATGA+AGG | + | chr8_1:17166619-17166638 | Msa1182160:intron | 25.0% |
| ! | TAATAAAATAGCTACCTGAT+AGG | - | chr8_1:17166694-17166713 | None:intergenic | 25.0% |
| !! | TAGACAATGATCTTATGTTT+TGG | + | chr8_1:17166743-17166762 | Msa1182160:intron | 25.0% |
| !!! | GATTGAACATGTTTTTAGTT+TGG | + | chr8_1:17166777-17166796 | Msa1182160:intron | 25.0% |
| ! | ATAACACATGAACTTTGATA+CGG | - | chr8_1:17166985-17167004 | None:intergenic | 25.0% |
| !!! | GCAAAATTACTTTTTATTCC+GGG | + | chr8_1:17167044-17167063 | Msa1182160:intron | 25.0% |
| !!! | TTTTATTTTGATACTACTGC+TGG | + | chr8_1:17167107-17167126 | Msa1182160:intron | 25.0% |
| !!! | CTTTTCCTTCTATTTTTTCA+GGG | + | chr8_1:17167295-17167314 | Msa1182160:intron | 25.0% |
| ! | AAATACCCTGAAAAAATAGA+AGG | - | chr8_1:17167303-17167322 | None:intergenic | 25.0% |
| ! | GAATCATGAGAAATAGAAAA+TGG | - | chr8_1:17167424-17167443 | None:intergenic | 25.0% |
| ! | CTTAAATGAAAATTGTGTTG+GGG | + | chr8_1:17167453-17167472 | Msa1182160:intron | 25.0% |
| ! | CTTAAATGAAAATTGTGTTG+GGG | + | chr8_1:17167453-17167472 | Msa1182160:intron | 25.0% |
| !!! | TTTGGTTCAATTTTTAAGAC+AGG | + | chr8_1:17167681-17167700 | Msa1182160:intron | 25.0% |
| !!! | TTGGTTCAATTTTTAAGACA+GGG | + | chr8_1:17167682-17167701 | Msa1182160:intron | 25.0% |
| ! | ATAGAAAGAGATATTACGTA+GGG | - | chr8_1:17167880-17167899 | None:intergenic | 25.0% |
| !!! | ATTATTTCTACCTTGATAGA+TGG | - | chr8_1:17168183-17168202 | None:intergenic | 25.0% |
| ! | AGAAAAAGTTTACAGAAAGA+AGG | - | chr8_1:17168214-17168233 | None:intergenic | 25.0% |
| !!! | TTTCTGTAAACTTTTTCTGT+TGG | + | chr8_1:17168216-17168235 | Msa1182160:intron | 25.0% |
| !!! | TTCTGTAAACTTTTTCTGTT+GGG | + | chr8_1:17168217-17168236 | Msa1182160:intron | 25.0% |
| !!! | TCATTTTAACAAGCATGAAA+GGG | - | chr8_1:17168313-17168332 | None:intergenic | 25.0% |
| !!! | TTCATTTTAACAAGCATGAA+AGG | - | chr8_1:17168314-17168333 | None:intergenic | 25.0% |
| !! | ATGCTTGTTAAAATGAAGAA+GGG | + | chr8_1:17168317-17168336 | Msa1182160:intron | 25.0% |
| ! | AAAATTCCCAAAATTGGATT+TGG | + | chr8_1:17168564-17168583 | Msa1182160:intron | 25.0% |
| ! | AATATATTCCAGATTCATCA+TGG | + | chr8_1:17168738-17168757 | Msa1182160:intron | 25.0% |
| !! | AGGTAAGTTTAGTTTACAAT+TGG | - | chr8_1:17168832-17168851 | None:intergenic | 25.0% |
| ! | AAACTAAACTTACCTCTATA+CGG | + | chr8_1:17168837-17168856 | Msa1182160:intron | 25.0% |
| ! | GTAACCTGATAATAATTGAT+AGG | + | chr8_1:17168862-17168881 | Msa1182160:intron | 25.0% |
| ! | AATTGTAGTACTGTTAAACA+TGG | + | chr8_1:17168934-17168953 | Msa1182160:intron | 25.0% |
| !! | TTTTACTGATGAGATAACAT+AGG | + | chr8_1:17169011-17169030 | Msa1182160:intron | 25.0% |
| ! | ATCACACATTTGTATGAAAT+AGG | - | chr8_1:17169575-17169594 | None:intergenic | 25.0% |
| CAATGATCAATGATGTGATT+GGG | - | chr8_1:17165878-17165897 | None:intergenic | 30.0% | |
| ACAATGATCAATGATGTGAT+TGG | - | chr8_1:17165879-17165898 | None:intergenic | 30.0% | |
| ! | CACATCCTAATTTTTCGTTT+AGG | + | chr8_1:17166166-17166185 | Msa1182160:intron | 30.0% |
| GAAACCCTAAACGAAAAATT+AGG | - | chr8_1:17166174-17166193 | None:intergenic | 30.0% | |
| !! | TTTCTTTGAGATCAGCTATA+AGG | + | chr8_1:17166190-17166209 | Msa1182160:intron | 30.0% |
| ! | AAAGTACTTATGCTATAAGC+TGG | - | chr8_1:17166315-17166334 | None:intergenic | 30.0% |
| GGATAGCTGATATATAAAAC+AGG | - | chr8_1:17166395-17166414 | None:intergenic | 30.0% | |
| GTCTAGGTAATATTCAACAT+AGG | - | chr8_1:17166556-17166575 | None:intergenic | 30.0% | |
| TACACCATTCAAATTCTGAT+TGG | + | chr8_1:17166712-17166731 | Msa1182160:intron | 30.0% | |
| AGAACCAATCAGAATTTGAA+TGG | - | chr8_1:17166719-17166738 | None:intergenic | 30.0% | |
| CTGTGAAGTTTCATTAATTC+TGG | + | chr8_1:17166888-17166907 | Msa1182160:CDS | 30.0% | |
| ACAAATGAATGTCATATTCC+CGG | - | chr8_1:17167065-17167084 | None:intergenic | 30.0% | |
| GAAAATATGTCAATTGGGTT+TGG | - | chr8_1:17167204-17167223 | None:intergenic | 30.0% | |
| CAATGATGTTGATATAGAAG+CGG | + | chr8_1:17167238-17167257 | Msa1182160:intron | 30.0% | |
| !!! | GCTTTTCCTTCTATTTTTTC+AGG | + | chr8_1:17167294-17167313 | Msa1182160:intron | 30.0% |
| !!! | TGGTTCAATTTTTAAGACAG+GGG | + | chr8_1:17167683-17167702 | Msa1182160:intron | 30.0% |
| ATAAGAGGAGGAATCTTAAA+TGG | - | chr8_1:17167802-17167821 | None:intergenic | 30.0% | |
| ! | CATGTTTGGTTTAAGATAAG+AGG | - | chr8_1:17167817-17167836 | None:intergenic | 30.0% |
| TAGAAAGAGATATTACGTAG+GGG | - | chr8_1:17167879-17167898 | None:intergenic | 30.0% | |
| GATAGAAAGAGATATTACGT+AGG | - | chr8_1:17167881-17167900 | None:intergenic | 30.0% | |
| TAAGATCACAATCTGATACA+GGG | - | chr8_1:17167932-17167951 | None:intergenic | 30.0% | |
| TTAAGATCACAATCTGATAC+AGG | - | chr8_1:17167933-17167952 | None:intergenic | 30.0% | |
| TATCAGATTGTGATCTTAAC+TGG | + | chr8_1:17167934-17167953 | Msa1182160:intron | 30.0% | |
| !! | GATGAGAAGGATTTGTTTTT+GGG | + | chr8_1:17168244-17168263 | Msa1182160:intron | 30.0% |
| ! | CATGCTTGTTAAAATGAAGA+AGG | + | chr8_1:17168316-17168335 | Msa1182160:intron | 30.0% |
| ! | TGCTTGTTAAAATGAAGAAG+GGG | + | chr8_1:17168318-17168337 | Msa1182160:intron | 30.0% |
| !! | AGCAGGGAATAACTTATTTT+TGG | + | chr8_1:17168472-17168491 | Msa1182160:intron | 30.0% |
| ! | AGTTCTCCAAATCCAATTTT+GGG | - | chr8_1:17168573-17168592 | None:intergenic | 30.0% |
| ! | TAAAAGCAGGACGATTTTAT+TGG | + | chr8_1:17168599-17168618 | Msa1182160:intron | 30.0% |
| ! | AAAAGCAGGACGATTTTATT+GGG | + | chr8_1:17168600-17168619 | Msa1182160:intron | 30.0% |
| AAAAAAGTGAGATGCCATTA+AGG | - | chr8_1:17168646-17168665 | None:intergenic | 30.0% | |
| TATATTCTGGTGAGAGAAAA+TGG | - | chr8_1:17168724-17168743 | None:intergenic | 30.0% | |
| ! | GATGAATCTGGAATATATTC+TGG | - | chr8_1:17168737-17168756 | None:intergenic | 30.0% |
| ! | ATTTTGAACCATGATGAATC+TGG | - | chr8_1:17168749-17168768 | None:intergenic | 30.0% |
| TCACCCTATCAATTATTATC+AGG | - | chr8_1:17168869-17168888 | None:intergenic | 30.0% | |
| TAACCATGATTTACAAGAAC+TGG | - | chr8_1:17169230-17169249 | None:intergenic | 30.0% | |
| CATTTGTATGAAATAGGAAC+CGG | - | chr8_1:17169569-17169588 | None:intergenic | 30.0% | |
| ! | GAAGAAAGGAACACTTGTTT+TGG | - | chr8_1:17165773-17165792 | None:intergenic | 35.0% |
| ! | AAAAGGTGTAACGTACTAAC+CGG | - | chr8_1:17165843-17165862 | None:intergenic | 35.0% |
| TTGGGAAGAAGAAGAACAAA+AGG | - | chr8_1:17165860-17165879 | None:intergenic | 35.0% | |
| TTACTGAATTCAGCAGAAGA+AGG | + | chr8_1:17165942-17165961 | Msa1182160:intron | 35.0% | |
| CGAAAAATTAGGATGTGTGA+AGG | - | chr8_1:17166163-17166182 | None:intergenic | 35.0% | |
| AGAACATATTCACTTAGGGT+CGG | - | chr8_1:17166237-17166256 | None:intergenic | 35.0% | |
| TGGATATTAAGCGGTTTAAG+TGG | - | chr8_1:17166295-17166314 | None:intergenic | 35.0% | |
| GCTATAAGCTGGATATTAAG+CGG | - | chr8_1:17166304-17166323 | None:intergenic | 35.0% | |
| AACATAAAGAATAAGGCCCT+AGG | - | chr8_1:17166530-17166549 | None:intergenic | 35.0% | |
| TCACTTCAGAATATAGGTCT+AGG | - | chr8_1:17166572-17166591 | None:intergenic | 35.0% | |
| !!! | GATCTTATGTTTTGGCATGT+TGG | + | chr8_1:17166751-17166770 | Msa1182160:intron | 35.0% |
| CACTTTGCTTTCAAAAACTC+TGG | - | chr8_1:17166859-17166878 | None:intergenic | 35.0% | |
| TCACTGAGAAACTTGATTCA+TGG | - | chr8_1:17166953-17166972 | None:intergenic | 35.0% | |
| ! | AGGAAAAGCACATTACTCTA+AGG | - | chr8_1:17167283-17167302 | None:intergenic | 35.0% |
| !! | TGAATCCTGTGTTTGCTTTT+AGG | + | chr8_1:17167605-17167624 | Msa1182160:intron | 35.0% |
| !! | GAATCCTGTGTTTGCTTTTA+GGG | + | chr8_1:17167606-17167625 | Msa1182160:intron | 35.0% |
| TTCAGCAACTCTCAACTAAA+CGG | - | chr8_1:17167633-17167652 | None:intergenic | 35.0% | |
| TTTAGTTGAGAGTTGCTGAA+GGG | + | chr8_1:17167633-17167652 | Msa1182160:intron | 35.0% | |
| !!! | GGTTCAATTTTTAAGACAGG+GGG | + | chr8_1:17167684-17167703 | Msa1182160:intron | 35.0% |
| !!! | AATTTTTAAGACAGGGGGAT+GGG | + | chr8_1:17167689-17167708 | Msa1182160:intron | 35.0% |
| AAGCAAAAAGTAGTCTAGGA+GGG | - | chr8_1:17167728-17167747 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCCCTCAAATT+GGG | + | chr8_1:17167739-17167758 | Msa1182160:intron | 35.0% |
| ! | GTTTGGTTTAAGATAAGAGG+AGG | - | chr8_1:17167814-17167833 | None:intergenic | 35.0% |
| AATTCTCGCTAGATATCAGT+TGG | + | chr8_1:17167963-17167982 | Msa1182160:CDS | 35.0% | |
| ATATCAGTTGGCTGAATTTG+AGG | + | chr8_1:17167975-17167994 | Msa1182160:CDS | 35.0% | |
| GACTATTCCCTTCACAAATT+CGG | + | chr8_1:17168004-17168023 | Msa1182160:intron | 35.0% | |
| TCCTAAACCGAATTTGTGAA+GGG | - | chr8_1:17168014-17168033 | None:intergenic | 35.0% | |
| TTCCTAAACCGAATTTGTGA+AGG | - | chr8_1:17168015-17168034 | None:intergenic | 35.0% | |
| !! | TGTAAACTTTTTCTGTTGGG+CGG | + | chr8_1:17168220-17168239 | Msa1182160:intron | 35.0% |
| !! | GGATGAGAAGGATTTGTTTT+TGG | + | chr8_1:17168243-17168262 | Msa1182160:intron | 35.0% |
| !!! | AGAAGGATTTGTTTTTGGGA+AGG | + | chr8_1:17168248-17168267 | Msa1182160:intron | 35.0% |
| TTGTTAAAATGAAGAAGGGG+AGG | + | chr8_1:17168321-17168340 | Msa1182160:intron | 35.0% | |
| TGTTAAAATGAAGAAGGGGA+GGG | + | chr8_1:17168322-17168341 | Msa1182160:intron | 35.0% | |
| !! | GTAGTGTTGTTTGATTGATG+AGG | + | chr8_1:17168437-17168456 | Msa1182160:intron | 35.0% |
| ! | GAGTTCTCCAAATCCAATTT+TGG | - | chr8_1:17168574-17168593 | None:intergenic | 35.0% |
| GAGAACTCATAAGTAAAAGC+AGG | + | chr8_1:17168586-17168605 | Msa1182160:intron | 35.0% | |
| ! | TTTAAAACCACGATCCACAA+GGG | - | chr8_1:17168915-17168934 | None:intergenic | 35.0% |
| !!! | TTTTAAAACCACGATCCACA+AGG | - | chr8_1:17168916-17168935 | None:intergenic | 35.0% |
| TGATTTCCTATCTCACATGT+TGG | + | chr8_1:17168962-17168981 | Msa1182160:intron | 35.0% | |
| !!! | TTTTTTGACATGCAGACAAG+AGG | + | chr8_1:17169125-17169144 | Msa1182160:intron | 35.0% |
| CTTCCAGTTCTTGTAAATCA+TGG | + | chr8_1:17169224-17169243 | Msa1182160:three_prime_UTR | 35.0% | |
| AGTTATTGCAGAACTCATGT+TGG | + | chr8_1:17169315-17169334 | Msa1182160:three_prime_UTR | 35.0% | |
| CCTCGATAAAAATCACAGTA+AGG | - | chr8_1:17169352-17169371 | None:intergenic | 35.0% | |
| ! | CCTTACTGTGATTTTTATCG+AGG | + | chr8_1:17169349-17169368 | Msa1182160:three_prime_UTR | 35.0% |
| ! | TACTGTGATTTTTATCGAGG+AGG | + | chr8_1:17169352-17169371 | Msa1182160:three_prime_UTR | 35.0% |
| GATTTGATAGAGATGGTTTG+TGG | + | chr8_1:17169374-17169393 | Msa1182160:three_prime_UTR | 35.0% | |
| ATTCTCCTATCTGCATCAAA+TGG | + | chr8_1:17169464-17169483 | Msa1182160:intron | 35.0% | |
| TTCTCCTATCTGCATCAAAT+GGG | + | chr8_1:17169465-17169484 | Msa1182160:intron | 35.0% | |
| ATTCTCCTATCTGCAACAAA+AGG | + | chr8_1:17169504-17169523 | Msa1182160:intron | 35.0% | |
| TTCTCCTATCTGCAACAAAA+GGG | + | chr8_1:17169505-17169524 | Msa1182160:intron | 35.0% | |
| AAAACGGTGAGAGAAGTTGA+GGG | - | chr8_1:17165816-17165835 | None:intergenic | 40.0% | |
| !!! | TTCTCTCACCGTTTTGATTC+CGG | + | chr8_1:17165821-17165840 | Msa1182160:five_prime_UTR | 40.0% |
| CGTACTAACCGGAATCAAAA+CGG | - | chr8_1:17165832-17165851 | None:intergenic | 40.0% | |
| AAGAAGGAGTGAATCATGTC+TGG | + | chr8_1:17165958-17165977 | Msa1182160:exon | 40.0% | |
| ATATTCACTTAGGGTCGGTT+AGG | - | chr8_1:17166232-17166251 | None:intergenic | 40.0% | |
| AGCTCAAATAAGCCAATCCT+AGG | + | chr8_1:17166510-17166529 | Msa1182160:intron | 40.0% | |
| GCTCAAATAAGCCAATCCTA+GGG | + | chr8_1:17166511-17166530 | Msa1182160:intron | 40.0% | |
| AAAGAATAAGGCCCTAGGAT+TGG | - | chr8_1:17166525-17166544 | None:intergenic | 40.0% | |
| !! | GGTGTTGCTTTGATTAGTTG+TGG | + | chr8_1:17166654-17166673 | Msa1182160:intron | 40.0% |
| !! | TTTTGCTAGGGGCGTAAAAA+TGG | - | chr8_1:17167030-17167049 | None:intergenic | 40.0% |
| AATTGGGTTTGGCAAGTTCA+AGG | - | chr8_1:17167193-17167212 | None:intergenic | 40.0% | |
| ! | CAGCATCAGGATTTTTGTAG+CGG | - | chr8_1:17167358-17167377 | None:intergenic | 40.0% |
| ! | GTTCATCAGCTCAATTTTGG+AGG | - | chr8_1:17167401-17167420 | None:intergenic | 40.0% |
| ! | TGGGTTCATCAGCTCAATTT+TGG | - | chr8_1:17167404-17167423 | None:intergenic | 40.0% |
| GTTTAGTTGAGAGTTGCTGA+AGG | + | chr8_1:17167632-17167651 | Msa1182160:intron | 40.0% | |
| TTAGTTGAGAGTTGCTGAAG+GGG | + | chr8_1:17167634-17167653 | Msa1182160:intron | 40.0% | |
| !!! | CAATTTTTAAGACAGGGGGA+TGG | + | chr8_1:17167688-17167707 | Msa1182160:intron | 40.0% |
| AGCAAAAAGTAGTCTAGGAG+GGG | - | chr8_1:17167727-17167746 | None:intergenic | 40.0% | |
| GAAGCAAAAAGTAGTCTAGG+AGG | - | chr8_1:17167729-17167748 | None:intergenic | 40.0% | |
| ! | CTTTTTGCTTCCCCTCAAAT+TGG | + | chr8_1:17167738-17167757 | Msa1182160:intron | 40.0% |
| ! | TTTTGCTTCCCCTCAAATTG+GGG | + | chr8_1:17167740-17167759 | Msa1182160:intron | 40.0% |
| TCCCTTCACAAATTCGGTTT+AGG | + | chr8_1:17168010-17168029 | Msa1182160:intron | 40.0% | |
| ATAGCTTCCTCTACAGTTTC+CGG | - | chr8_1:17168150-17168169 | None:intergenic | 40.0% | |
| TGTAGAGGAAGCTATTGCTA+TGG | + | chr8_1:17168155-17168174 | Msa1182160:CDS | 40.0% | |
| TGCTATGGTTCCATCTATCA+AGG | + | chr8_1:17168170-17168189 | Msa1182160:CDS | 40.0% | |
| !! | GTAAACTTTTTCTGTTGGGC+GGG | + | chr8_1:17168221-17168240 | Msa1182160:intron | 40.0% |
| !! | TAAACTTTTTCTGTTGGGCG+GGG | + | chr8_1:17168222-17168241 | Msa1182160:intron | 40.0% |
| !!! | GATTTGTTTTTGGGAAGGAG+TGG | + | chr8_1:17168253-17168272 | Msa1182160:intron | 40.0% |
| ACAATGTAACAGAAGGCTCA+CGG | - | chr8_1:17168694-17168713 | None:intergenic | 40.0% | |
| ATCAGGTTACAACCGTATAG+AGG | - | chr8_1:17168852-17168871 | None:intergenic | 40.0% | |
| GTTCTGTGATGTACTGTAAG+TGG | + | chr8_1:17169250-17169269 | Msa1182160:three_prime_UTR | 40.0% | |
| TCTCCTATCTGCATCAAATG+GGG | + | chr8_1:17169466-17169485 | Msa1182160:intron | 40.0% | |
| TCTCCTATCTGCAACAAAAG+GGG | + | chr8_1:17169506-17169525 | Msa1182160:intron | 40.0% | |
| ACAAGTGTTCCTTTCTTCCC+AGG | + | chr8_1:17165775-17165794 | Msa1182160:five_prime_UTR | 45.0% | |
| ! | GGTTTTTGTGACGTTCACCT+GGG | - | chr8_1:17165795-17165814 | None:intergenic | 45.0% |
| CAAAACGGTGAGAGAAGTTG+AGG | - | chr8_1:17165817-17165836 | None:intergenic | 45.0% | |
| GTGAATCATGTCTGGAGAAG+AGG | + | chr8_1:17165966-17165985 | Msa1182160:exon | 45.0% | |
| AACGCCGCTGAACTCAAAAT+CGG | + | chr8_1:17165994-17166013 | Msa1182160:CDS | 45.0% | |
| !!! | GTCTCCGATTTTGAGTTCAG+CGG | - | chr8_1:17166001-17166020 | None:intergenic | 45.0% |
| GCTGAACTCAAAATCGGAGA+CGG | + | chr8_1:17166000-17166019 | Msa1182160:CDS | 45.0% | |
| TTCTTTCCCTGCGTTCTGTT+TGG | + | chr8_1:17166077-17166096 | Msa1182160:intron | 45.0% | |
| TTCAAGCCAAACAGAACGCA+GGG | - | chr8_1:17166086-17166105 | None:intergenic | 45.0% | |
| ATTCAAGCCAAACAGAACGC+AGG | - | chr8_1:17166087-17166106 | None:intergenic | 45.0% | |
| TTAGTTGTGGCCTATCACTG+TGG | + | chr8_1:17166667-17166686 | Msa1182160:intron | 45.0% | |
| CGAACTTGTCTAACAGCATC+AGG | - | chr8_1:17167371-17167390 | None:intergenic | 45.0% | |
| GGGGAAGCAAAAAGTAGTCT+AGG | - | chr8_1:17167732-17167751 | None:intergenic | 45.0% | |
| TTTGCTTCCCCTCAAATTGG+GGG | + | chr8_1:17167741-17167760 | Msa1182160:intron | 45.0% | |
| TCCAAATCCCCCCAATTTGA+GGG | - | chr8_1:17167752-17167771 | None:intergenic | 45.0% | |
| ATCCAAATCCCCCCAATTTG+AGG | - | chr8_1:17167753-17167772 | None:intergenic | 45.0% | |
| TCTCCCTTCGTTGAACCAAA+CGG | + | chr8_1:17167852-17167871 | Msa1182160:intron | 45.0% | |
| ATATTACGTAGGGGTCCGTT+TGG | - | chr8_1:17167870-17167889 | None:intergenic | 45.0% | |
| TTATTGCAGCTGTGTGTCCT+AGG | + | chr8_1:17168114-17168133 | Msa1182160:intron | 45.0% | |
| TAGCTTCCTCTACAGTTTCC+GGG | - | chr8_1:17168149-17168168 | None:intergenic | 45.0% | |
| GAAGAAGGGGAGGGAAATAA+AGG | + | chr8_1:17168331-17168350 | Msa1182160:intron | 45.0% | |
| TGAGGTCGATACTATCTAGC+AGG | + | chr8_1:17168455-17168474 | Msa1182160:intron | 45.0% | |
| GAGGTCGATACTATCTAGCA+GGG | + | chr8_1:17168456-17168475 | Msa1182160:intron | 45.0% | |
| CAATGTAACAGAAGGCTCAC+GGG | - | chr8_1:17168693-17168712 | None:intergenic | 45.0% | |
| ! | GAAGTATTCTTGCACCCTTG+TGG | + | chr8_1:17168898-17168917 | Msa1182160:intron | 45.0% |
| CCACAACCAACATGTGAGAT+AGG | - | chr8_1:17168971-17168990 | None:intergenic | 45.0% | |
| ! | CCTATCTCACATGTTGGTTG+TGG | + | chr8_1:17168968-17168987 | Msa1182160:intron | 45.0% |
| GCAGCTTCACACAACTCAAT+AGG | - | chr8_1:17169039-17169058 | None:intergenic | 45.0% | |
| TTGACATGCAGACAAGAGGA+CGG | + | chr8_1:17169129-17169148 | Msa1182160:intron | 45.0% | |
| CGAGGAGGATTTGATAGAGA+TGG | + | chr8_1:17169367-17169386 | Msa1182160:three_prime_UTR | 45.0% | |
| CTCCTATCTGCATCAAATGG+GGG | + | chr8_1:17169467-17169486 | Msa1182160:intron | 45.0% | |
| TCCTATCTGCATCAAATGGG+GGG | + | chr8_1:17169468-17169487 | Msa1182160:intron | 45.0% | |
| CTCCTATCTGCAACAAAAGG+GGG | + | chr8_1:17169507-17169526 | Msa1182160:intron | 45.0% | |
| TCCTATCTGCAACAAAAGGG+GGG | + | chr8_1:17169508-17169527 | Msa1182160:intron | 45.0% | |
| TGAGATCACAGTACACACAC+CGG | + | chr8_1:17169547-17169566 | Msa1182160:three_prime_UTR | 45.0% | |
| TGACGTTCACCTGGGAAGAA+AGG | - | chr8_1:17165787-17165806 | None:intergenic | 50.0% | |
| ! | GGGTTTTTGTGACGTTCACC+TGG | - | chr8_1:17165796-17165815 | None:intergenic | 50.0% |
| CACTTAGGGTCGGTTAGGTA+AGG | - | chr8_1:17166227-17166246 | None:intergenic | 50.0% | |
| CCTGATAGGACCACAGTGAT+AGG | - | chr8_1:17166680-17166699 | None:intergenic | 50.0% | |
| CCTATCACTGTGGTCCTATC+AGG | + | chr8_1:17166677-17166696 | Msa1182160:intron | 50.0% | |
| CGGACCCTAAAAGCAAACAC+AGG | - | chr8_1:17167613-17167632 | None:intergenic | 50.0% | |
| TTGAGAGTTGCTGAAGGGGA+GGG | + | chr8_1:17167638-17167657 | Msa1182160:intron | 50.0% | |
| !!! | TTTTAAGACAGGGGGATGGG+AGG | + | chr8_1:17167692-17167711 | Msa1182160:intron | 50.0% |
| ! | TTTAAGACAGGGGGATGGGA+GGG | + | chr8_1:17167693-17167712 | Msa1182160:intron | 50.0% |
| TTGCTTCCCCTCAAATTGGG+GGG | + | chr8_1:17167742-17167761 | Msa1182160:intron | 50.0% | |
| CCAAATCCCCCCAATTTGAG+GGG | - | chr8_1:17167751-17167770 | None:intergenic | 50.0% | |
| ATTGGGGGGATTTGGATGTG+AGG | + | chr8_1:17167756-17167775 | Msa1182160:intron | 50.0% | |
| ! | GGTCCGTTTGGTTCAACGAA+GGG | - | chr8_1:17167858-17167877 | None:intergenic | 50.0% |
| TGTCCTAGGCAATCTTTGCC+CGG | + | chr8_1:17168128-17168147 | Msa1182160:CDS | 50.0% | |
| TTTCCGGGCAAAGATTGCCT+AGG | - | chr8_1:17168134-17168153 | None:intergenic | 50.0% | |
| TCTTTGCCCGGAAACTGTAG+AGG | + | chr8_1:17168140-17168159 | Msa1182160:CDS | 50.0% | |
| ! | TGGGAAGGAGTGGTGATGTT+AGG | + | chr8_1:17168263-17168282 | Msa1182160:intron | 50.0% |
| TGACATGCAGACAAGAGGAC+GGG | + | chr8_1:17169130-17169149 | Msa1182160:intron | 50.0% | |
| TGCATGAGACTGTGTGTGGT+AGG | + | chr8_1:17169397-17169416 | Msa1182160:three_prime_UTR | 50.0% | |
| GTTGAGAGTTGCTGAAGGGG+AGG | + | chr8_1:17167637-17167656 | Msa1182160:intron | 55.0% | |
| TGAGAGTTGCTGAAGGGGAG+GGG | + | chr8_1:17167639-17167658 | Msa1182160:intron | 55.0% | |
| CCCCTCAAATTGGGGGGATT+TGG | + | chr8_1:17167748-17167767 | Msa1182160:intron | 55.0% | |
| ! | GGGTCCGTTTGGTTCAACGA+AGG | - | chr8_1:17167859-17167878 | None:intergenic | 55.0% |
| TCTTGCACCCTTGTGGATCG+TGG | + | chr8_1:17168905-17168924 | Msa1182160:intron | 55.0% | |
| GTGGTGCATGAGACTGTGTG+TGG | + | chr8_1:17169393-17169412 | Msa1182160:three_prime_UTR | 55.0% | |
| GCCCCCCATTTGATGCAGAT+AGG | - | chr8_1:17169472-17169491 | None:intergenic | 55.0% | |
| ! | GCCCCCCTTTTGTTGCAGAT+AGG | - | chr8_1:17169512-17169531 | None:intergenic | 55.0% |
| TCTGTTGGGCGGGGATGAGA+AGG | + | chr8_1:17168231-17168250 | Msa1182160:intron | 60.0% | |
| ! | GCAGACAAGAGGACGGGCTC+AGG | + | chr8_1:17169136-17169155 | Msa1182160:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 17165753 | 17169682 | 17165753 | ID=Msa1182160;Name=Msa1182160 |
| chr8_1 | mRNA | 17165753 | 17169682 | 17165753 | ID=Msa1182160-mRNA-1;Parent=Msa1182160;Name=Msa1182160-mRNA-1;_AED=0.14;_eAED=0.14;_QI=87|1|1|1|0.5|0.33|9|425|138 |
| chr8_1 | exon | 17165753 | 17165796 | 17165753 | ID=Msa1182160-mRNA-1:exon:6358;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17165818 | 17165842 | 17165818 | ID=Msa1182160-mRNA-1:exon:6359;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17165955 | 17166021 | 17165955 | ID=Msa1182160-mRNA-1:exon:6360;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17166860 | 17166968 | 17166860 | ID=Msa1182160-mRNA-1:exon:6361;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17167316 | 17167393 | 17167316 | ID=Msa1182160-mRNA-1:exon:6362;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17167963 | 17167996 | 17167963 | ID=Msa1182160-mRNA-1:exon:6363;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17168123 | 17168191 | 17168123 | ID=Msa1182160-mRNA-1:exon:6364;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17169140 | 17169473 | 17169140 | ID=Msa1182160-mRNA-1:exon:6365;Parent=Msa1182160-mRNA-1 |
| chr8_1 | exon | 17169514 | 17169682 | 17169514 | ID=Msa1182160-mRNA-1:exon:6366;Parent=Msa1182160-mRNA-1 |
| chr8_1 | five_prime_UTR | 17165753 | 17165796 | 17165753 | ID=Msa1182160-mRNA-1:five_prime_utr;Parent=Msa1182160-mRNA-1 |
| chr8_1 | five_prime_UTR | 17165818 | 17165842 | 17165818 | ID=Msa1182160-mRNA-1:five_prime_utr;Parent=Msa1182160-mRNA-1 |
| chr8_1 | five_prime_UTR | 17165955 | 17165972 | 17165955 | ID=Msa1182160-mRNA-1:five_prime_utr;Parent=Msa1182160-mRNA-1 |
| chr8_1 | CDS | 17165973 | 17166021 | 17165973 | ID=Msa1182160-mRNA-1:cds;Parent=Msa1182160-mRNA-1 |
| chr8_1 | CDS | 17166860 | 17166968 | 17166860 | ID=Msa1182160-mRNA-1:cds;Parent=Msa1182160-mRNA-1 |
| chr8_1 | CDS | 17167316 | 17167393 | 17167316 | ID=Msa1182160-mRNA-1:cds;Parent=Msa1182160-mRNA-1 |
| chr8_1 | CDS | 17167963 | 17167996 | 17167963 | ID=Msa1182160-mRNA-1:cds;Parent=Msa1182160-mRNA-1 |
| chr8_1 | CDS | 17168123 | 17168191 | 17168123 | ID=Msa1182160-mRNA-1:cds;Parent=Msa1182160-mRNA-1 |
| chr8_1 | CDS | 17169140 | 17169217 | 17169140 | ID=Msa1182160-mRNA-1:cds;Parent=Msa1182160-mRNA-1 |
| chr8_1 | three_prime_UTR | 17169218 | 17169473 | 17169218 | ID=Msa1182160-mRNA-1:three_prime_utr;Parent=Msa1182160-mRNA-1 |
| chr8_1 | three_prime_UTR | 17169514 | 17169682 | 17169514 | ID=Msa1182160-mRNA-1:three_prime_utr;Parent=Msa1182160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
